HHsearch alignment for GI: 254780795 and conserved domain: cd06617
>cd06617 PKc_MKK3_6 Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threon
Probab=96.65 E-value=0.058 Score=32.30 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=67.9
Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 100466812001799943-995-8999821669988999---99999999853267755510010267787522451557
Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316)
Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316)
T Consensus 6 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~e~~~~--~--~~~~hp~iv~~~~-~--~~~~~~~~iv 78 (280)
T cd06617 6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDIS--M--RSSDCPYTVHFYG-A--LFREGDVWIC 78 (280)
T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--H--HHCCCCCEEEEEE-E--EEECCEEEEE
T ss_conf 789722768299999987999799999989113867999999999999--9--8579998756999-9--9889989999
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316)
Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316)
T Consensus 79 mE~~~~~------------l~~~~~~~~~~~~~~~e--------~~~~------------~i~~qil~gl~ylH~----~ 122 (280)
T cd06617 79 MEVMDTS------------LDKFYKKVYKKGLTIPE--------DILG------------KIAVSVVKALEYLHE----K 122 (280)
T ss_pred EECCCCC------------HHHHHHHHHHCCCCCCH--------HHHH------------HHHHHHHHHHHHHHH----C
T ss_conf 9937999------------89999999864899989--------9999------------999999999999975----4
Q ss_pred CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf 7774440223464225627-9604873162135
Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316)
Q Consensus 182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316)
T Consensus 123 --~~IiHRDiKP~NILl~~~g~iK-l~DFGla~ 152 (280)
T cd06617 123 --LSVIHRDVKPSNILINRNGQVK-LCDFGISG 152 (280)
T ss_pred --CCEEECCCCHHHEEECCCCCEE-EEECCCCC
T ss_conf --9988531768985677999999-98276766