HHsearch alignment for GI: 254780795 and conserved domain: cd06623
>cd06623 PKc_MAPKK_plant_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania m
Probab=97.37 E-value=0.011 Score=37.01 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=74.5
Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 100466812001799943-99-5899982166998---899999999999853267755510010267787522451557
Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316)
Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316)
T Consensus 6 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~HpnI-----V~~~~---~~~~~~~~~lv 77 (264)
T cd06623 6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYV-----VKCYG---AFYKEGEISIV 77 (264)
T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEEE---EEEECCEEEEE
T ss_conf 58983178939999999899989999998214697899999999999986799988-----82999---99889999999
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316)
Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316)
T Consensus 78 mEy~~~G~L~~-----------~i---~~---~------~~~~e~~~~------------~~~~qi~~gl~yLH~----- 117 (264)
T cd06623 78 LEYMDGGSLAD-----------LL---KK---V------GKIPEPVLA------------YIARQILKGLDYLHT----- 117 (264)
T ss_pred EECCCCCCHHH-----------HH---HH---C------CCCCHHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf 97899984999-----------99---73---4------898999999------------999999999999987-----
Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 777444022346422562796048731621356
Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 118 -~~~IiHRDlKp~NILl~~~~~iKl~DFG~a~~ 149 (264)
T cd06623 118 -KRHIIHRDIKPSNLLINSKGEVKIADFGISKV 149 (264)
T ss_pred -CCCEECCCCCHHHEEECCCCCEEEECCCCCEE
T ss_conf -08988044788996988999999921878858