HHsearch alignment for GI: 254780795 and conserved domain: cd06637

>cd06637 STKc_TNIK Serine/threonine kinases (STKs),Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytos
Probab=97.71  E-value=0.0012  Score=43.21  Aligned_cols=148  Identities=19%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH----HH
Q ss_conf             8605310046681200179994-3995-89998216-6998899999999999853267755510010267787----52
Q gi|254780795|r   22 GQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG----FL   94 (316)
Q Consensus        22 g~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~----~~   94 (316)
T Consensus         6 g~y~~~~~IG~G~fg~Vy~a~~~~~~~~~AiK~i~~~~~~~~~~~~E~~~l~~~~~h~n-i~~~----~~~~~~~~~~~~   80 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN-IATY----YGAFIKKNPPGM   80 (272)
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-EEEE----EEEEEECCCCCC
T ss_conf             88698779922878299999998999799999986687869999999999985659980-7489----999996578887


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
T Consensus        81 ~~~~~ivmE~~~~G~L~-----------~~l---~~-~~~~------~~~e~~i~------------~i~~qi~~gl~yl  127 (272)
T cd06637          81 DDQLWLVMEFCGAGSVT-----------DLI---KN-TKGN------TLKEEWIA------------YICREILRGLSHL  127 (272)
T ss_pred             CCEEEEEEECCCCCCHH-----------HHH---HH-CCCC------CCCHHHHH------------HHHHHHHHHHHHH
T ss_conf             88899999588999799-----------999---87-1689------99999999------------9999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             8765210777444022346422562796048731621356
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
T Consensus       128 H~-------~~iiHRDlKp~NILl~~~~~vKi~DFGls~~  160 (272)
T cd06637         128 HQ-------HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  160 (272)
T ss_pred             HH-------CCCCCCCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             98-------9915674678998987999899985888658