HHsearch alignment for GI: 254780795 and conserved domain: cd06647

>cd06647 STKc_PAK_I Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include
Probab=97.78  E-value=0.00049  Score=45.76  Aligned_cols=139  Identities=15%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             05310046681200179994-399-589998216--69988999999999998532677555100102677875224515
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
T Consensus        21 Y~~~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~   92 (293)
T cd06647          21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKH-----PNIVNYLD---SYLVGDELW   92 (293)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             0876897048680999999889998999999882007538999999999986799-----89990999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
T Consensus        93 ivmEy~~gg~L~-----------~~i~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~---  133 (293)
T cd06647          93 VVMEYLAGGSLT-----------DVVTE-----TCMD--------EGQI------------AAVCRECLQALEFLHS---  133 (293)
T ss_pred             EEEECCCCCCHH-----------HHHHH-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             999678989289-----------99870-----6999--------9999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       134 ----~~IiHRDiKp~NILl~~~g~vKl~DFGla~  163 (293)
T cd06647         134 ----NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             ----CCCEECCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             ----893546687688789999999998288876