HHsearch alignment for GI: 254780795 and conserved domain: cd06647
>cd06647 STKc_PAK_I Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include
Probab=97.78 E-value=0.00049 Score=45.76 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=76.5
Q ss_pred EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 05310046681200179994-399-589998216--69988999999999998532677555100102677875224515
Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316)
Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316)
T Consensus 21 Y~~~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~ 92 (293)
T cd06647 21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKH-----PNIVNYLD---SYLVGDELW 92 (293)
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf 0876897048680999999889998999999882007538999999999986799-----89990999---999899999
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316)
Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316)
T Consensus 93 ivmEy~~gg~L~-----------~~i~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~--- 133 (293)
T cd06647 93 VVMEYLAGGSLT-----------DVVTE-----TCMD--------EGQI------------AAVCRECLQALEFLHS--- 133 (293)
T ss_pred EEEECCCCCCHH-----------HHHHH-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf 999678989289-----------99870-----6999--------9999------------9999999999999997---
Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 1077744402234642256279604873162135
Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 134 ----~~IiHRDiKp~NILl~~~g~vKl~DFGla~ 163 (293)
T cd06647 134 ----NQVIHRDIKSDNILLGMDGSVKLTDFGFCA 163 (293)
T ss_pred ----CCCEECCCCHHHEEECCCCCEEEECCCCCE
T ss_conf ----893546687688789999999998288876