HHsearch alignment for GI: 254780795 and conserved domain: cd07865

>cd07865 STKc_CDK9 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participa
Probab=98.01  E-value=0.0002  Score=48.23  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             CCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHH--HHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHH
Q ss_conf             98605310046681200179994-399-589998216--69988--99999999999853267-7555100102677875
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEK--DLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGF   93 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~--~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~   93 (316)
T Consensus        11 i~~Y~~~~~IG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H~niv~~~~~~~~~-~~~~~~   89 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTK-ATPYNR   89 (310)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC-CCCCCC
T ss_conf             4787776697337284999999999997999999841004326689999999999974799814068899733-645556


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             22451557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
T Consensus        90 ~~~~~~lv~E~~~~~l------------~~~~~~---~~~~~--------~~~~i------------~~i~~Qil~aL~y  134 (310)
T cd07865          90 FKGSFYLVFEFCEHDL------------AGLLSN---KNVKF--------TLSEI------------KKVMKQLLNGLYY  134 (310)
T ss_pred             CCCEEEEEEECCCCCH------------HHHHHH---CCCCC--------CHHHH------------HHHHHHHHHHHHH
T ss_conf             6875999996689976------------888863---46898--------99999------------9999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       135 LH~-------~gIiHRDlKPeNILl~~~~~vKl~DFGla~  167 (310)
T cd07865         135 IHR-------NKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             HHH-------CCCCCCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             987-------877516787899688788988982166441