HHsearch alignment for GI: 254780795 and conserved domain: cd07868

>cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R
Probab=97.47  E-value=0.00074  Score=44.59  Aligned_cols=143  Identities=17%  Similarity=0.206  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEEEEEC----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             466812001799943----9958999821669988999999999998532677555100102677875224515578647
Q gi|254780795|r   30 IIHGVENSNFVIQTS----KGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        30 i~~G~~Ntny~v~t~----~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
T Consensus         9 iG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~~~~~~~~rEi~iL~~l~h-----pniv~l~~-~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKH-----PNVISLQK-VFLSHADRKVWLLFDYA   82 (317)
T ss_pred             EEECCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEEEEEEECC
T ss_conf             4106181999999842863849999998988785899999999986799-----89984889-99707997799999627


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88707689989999999986436753068754332311245645766752001552278899999998887652107774
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG  185 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g  185 (316)
T Consensus        83 ~~~------L~---~---~~-~~~~~~~~~~--~~~~l~~~~----i--------~~~~~qil~al~ylH~-------~~  128 (317)
T cd07868          83 EHD------LW---H---II-KFHRASKANK--KPVQLPRGM----V--------KSLLYQILDGIHYLHA-------NW  128 (317)
T ss_pred             CCC------HH---H---HH-HHHHCCCCCC--CCCCCCHHH----H--------HHHHHHHHHHHHHHHH-------CC
T ss_conf             997------89---9---99-8722010015--766789999----9--------9999999999999987-------89


Q ss_pred             EEECCCCCCCEEEC-----CCCCEEEECCCCCC
Q ss_conf             44022346422562-----79604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFY-----NNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~-----~~~i~giIDF~~~~  213 (316)
T Consensus       129 IiHRDlKP~NILi~~~~~~~~~vK-i~DFG~a~  160 (317)
T cd07868         129 VLHRDLKPANILVMGEGPERGRVK-IADMGFAR  160 (317)
T ss_pred             EEECCCCCCEEEEECCCCCCCCEE-ECCCCCCE
T ss_conf             660578702078723688778578-73565025