HHsearch alignment for GI: 254780795 and conserved domain: cd07868
>cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R
Probab=97.47 E-value=0.00074 Score=44.59 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCCCEEEEEEEEEC----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 466812001799943----9958999821669988999999999998532677555100102677875224515578647
Q gi|254780795|r 30 IIHGVENSNFVIQTS----KGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316)
Q Consensus 30 i~~G~~Ntny~v~t~----~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316)
T Consensus 9 iG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~~~~~~~~rEi~iL~~l~h-----pniv~l~~-~~~~~~~~~~~lv~e~~ 82 (317)
T cd07868 9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKH-----PNVISLQK-VFLSHADRKVWLLFDYA 82 (317)
T ss_pred EEECCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEEEEEEECC
T ss_conf 4106181999999842863849999998988785899999999986799-----89984889-99707997799999627
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88707689989999999986436753068754332311245645766752001552278899999998887652107774
Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316)
Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316)
T Consensus 83 ~~~------L~---~---~~-~~~~~~~~~~--~~~~l~~~~----i--------~~~~~qil~al~ylH~-------~~ 128 (317)
T cd07868 83 EHD------LW---H---II-KFHRASKANK--KPVQLPRGM----V--------KSLLYQILDGIHYLHA-------NW 128 (317)
T ss_pred CCC------HH---H---HH-HHHHCCCCCC--CCCCCCHHH----H--------HHHHHHHHHHHHHHHH-------CC
T ss_conf 997------89---9---99-8722010015--766789999----9--------9999999999999987-------89
Q ss_pred EEECCCCCCCEEEC-----CCCCEEEECCCCCC
Q ss_conf 44022346422562-----79604873162135
Q gi|254780795|r 186 IIHADLFPDNVLFY-----NNKIMGLIDFYFSC 213 (316)
Q Consensus 186 ~IHgDl~~~NiL~~-----~~~i~giIDF~~~~ 213 (316)
T Consensus 129 IiHRDlKP~NILi~~~~~~~~~vK-i~DFG~a~ 160 (317)
T cd07868 129 VLHRDLKPANILVMGEGPERGRVK-IADMGFAR 160 (317)
T ss_pred EEECCCCCCEEEEECCCCCCCCEE-ECCCCCCE
T ss_conf 660578702078723688778578-73565025