HHsearch alignment for GI: 254780795 and conserved domain: cd07875
>cd07875 STKc_JNK1 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes
Probab=97.47 E-value=0.0025 Score=41.19 Aligned_cols=140 Identities=15% Similarity=0.201 Sum_probs=70.0
Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCE
Q ss_conf 10046681200179994-399-5899982166-998---8999999999998532677-555100102677875224515
Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPA 99 (316)
Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~ 99 (316)
T Consensus 29 ~~~IG~G~fG~V~~a~d~~t~~~vAIK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIV~l~~~~~~--~~~~~~-~~~~y 105 (364)
T cd07875 29 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTP--QKSLEE-FQDVY 105 (364)
T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCCC-CCEEE
T ss_conf 089601638699999988999899999989224296899999999999986799599958899940--675554-78189
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316)
Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316)
T Consensus 106 iV~E~~~~~L--------~~~i-~------~---~l~--------~~~i~------------~i~~Qil~al~ylH~--- 144 (364)
T cd07875 106 IVMELMDANL--------CQVI-Q------M---ELD--------HERMS------------YLLYQMLCGIKHLHS--- 144 (364)
T ss_pred EEEECCCCCH--------HHHH-H------H---CCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf 9995679878--------9998-7------3---399--------99999------------999999999999987---
Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 10777444022346422562796048731621356
Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 145 ----~~IiHRDlKP~NILl~~~~~iKi~DFGlAr~ 175 (364)
T cd07875 145 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLART 175 (364)
T ss_pred ----CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf ----8834446888887888899889832123523