Query         gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs    219 out of 1394
Neff          8.1 
Searched_HMMs 39220
Date          Sun May 29 19:13:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780795.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK05231 homoserine kinase; Pr 100.0       0       0  700.5  30.4  315    1-316     1-319 (319)
  2 TIGR00938 thrB_alt homoserine  100.0       0       0  676.4  20.9  304    1-304     1-312 (312)
  3 cd05153 HomoserineK_II Homoser 100.0       0       0  632.8  27.9  296    9-305     1-296 (296)
  4 COG2334 Putative homoserine ki 100.0       0       0  439.6  28.0  313    1-316     5-328 (331)
  5 PRK06149 hypothetical protein; 100.0       0       0  321.2  26.2  302    6-315    16-342 (972)
  6 PRK06148 hypothetical protein; 100.0       0       0  316.9  25.7  300    6-315    10-334 (1015)
  7 TIGR02906 spore_CotS spore coa 100.0 1.8E-31 4.6E-36  223.3  19.5  256   38-303    12-305 (321)
  8 pfam01636 APH Phosphotransfera 100.0 1.3E-30 3.3E-35  217.8  15.5  216   27-250     2-230 (239)
  9 PRK11768 serine/threonine prot 100.0 1.6E-28 4.2E-33  204.2  23.8  296    3-312     7-320 (326)
 10 cd05154 ACAD10_11_like Acyl-Co  99.9 2.4E-26 6.2E-31  190.1  14.5  200   26-228     2-220 (223)
 11 cd05120 APH_ChoK_like Aminogly  99.9 1.2E-25 3.2E-30  185.5  13.1  147   26-228     2-152 (155)
 12 pfam03881 Fructosamin_kin Fruc  99.9 3.1E-20 7.8E-25  150.6  20.7  222   23-265    17-257 (287)
 13 cd05151 ChoK Choline Kinase (C  99.9 1.8E-21 4.5E-26  158.6  14.1  165   25-253     1-169 (170)
 14 cd05156 ChoK_euk Choline Kinas  99.9 5.6E-20 1.4E-24  148.9  19.5  226   26-264     2-282 (302)
 15 COG3173 Predicted aminoglycosi  99.9 9.4E-20 2.4E-24  147.5  19.8  244    6-256     7-274 (321)
 16 cd05157 ETNK_euk Ethanolamine   99.9 4.3E-20 1.1E-24  149.7  15.8  193   25-229     1-216 (235)
 17 cd05155 APH_ChoK_like_1 Unchar  99.9 6.2E-20 1.6E-24  148.6  16.1  205   27-249     2-221 (235)
 18 TIGR02721 ycfN_thiK thiamine k  99.7   5E-17 1.3E-21  129.8  13.0  202   29-256     3-214 (262)
 19 cd05152 MPH2' Macrolide 2'-Pho  99.7 1.6E-16 4.2E-21  126.5  15.0  217   15-252     3-246 (276)
 20 COG3001 Uncharacterized protei  99.7 7.6E-16 1.9E-20  122.2  17.7  226   15-263     9-256 (286)
 21 TIGR02904 spore_ysxE spore coa  99.7 7.8E-16   2E-20  122.1  16.1  245   12-266     1-277 (313)
 22 cd05150 APH Aminoglycoside 3'-  99.7 1.6E-15 4.1E-20  120.1  17.0  224   29-265     5-239 (244)
 23 pfam01633 Choline_kinase Choli  99.7 5.2E-16 1.3E-20  123.3  13.9  176   45-233     2-191 (208)
 24 PTZ00296 choline kinase; Provi  99.7   7E-14 1.8E-18  109.5  22.4  244   25-282   106-398 (439)
 25 KOG2686 consensus               99.6 2.2E-13 5.5E-18  106.3  19.2  230   23-266    41-312 (366)
 26 KOG4720 consensus               99.6 2.3E-12   6E-17   99.6  19.9  260   15-290    75-367 (391)
 27 PRK01723 3-deoxy-D-manno-octul  99.4 3.9E-12 9.9E-17   98.2  12.1  166   27-252    39-238 (240)
 28 PRK09605 O-sialoglycoprotein e  99.4 7.9E-12   2E-16   96.2  13.0  131   62-254   385-518 (536)
 29 COG3642 Mn2+-dependent serine/  99.4 2.9E-11 7.5E-16   92.5  13.3  166   29-256     3-184 (204)
 30 PRK09550 mtnK methylthioribose  99.3 2.1E-09 5.2E-14   80.6  21.4  212    3-225     1-261 (398)
 31 COG0510 ycfN Thiamine kinase a  99.3 8.2E-11 2.1E-15   89.6  14.0  198   28-256    12-219 (269)
 32 PRK12396 5-methylribose kinase  99.3 3.5E-10   9E-15   85.5  13.9  214    1-225     4-267 (409)
 33 TIGR02172 Fb_sc_TIGR02172 Fibr  99.2 2.7E-10 6.9E-15   86.2  12.6  208   30-266     9-231 (234)
 34 COG3231 Aph Aminoglycoside pho  99.2 3.8E-10 9.6E-15   85.3  13.1  218   37-266    34-262 (266)
 35 COG3178 Predicted phosphotrans  99.2 1.4E-09 3.5E-14   81.7  15.6  216   58-287    63-307 (351)
 36 pfam07914 DUF1679 Protein of u  99.2 9.8E-10 2.5E-14   82.6  13.8  254    5-263    11-358 (413)
 37 PRK10271 thiK thiamine kinase;  99.2 2.8E-10 7.2E-15   86.1  10.5  139  101-259     2-142 (188)
 38 KOG3021 consensus               99.2 9.1E-09 2.3E-13   76.4  17.7  224   15-260     5-276 (313)
 39 TIGR02905 spore_yutH spore coa  99.2 6.4E-10 1.6E-14   83.8  11.6  236   43-288    26-299 (325)
 40 pfam02958 DUF227 Domain of unk  99.1 2.5E-09 6.2E-14   80.1  10.5  150   98-251    91-283 (293)
 41 smart00587 CHK ZnF_C4 abd HLH   99.0 8.6E-10 2.2E-14   83.0   7.6  143  106-251    13-189 (196)
 42 cd05119 RIO RIO kinase family,  99.0 9.2E-09 2.3E-13   76.3  10.3  133   29-214     4-163 (187)
 43 cd05144 RIO2_C RIO kinase fami  98.9 6.7E-08 1.7E-12   70.7  12.7  134   22-214    14-174 (198)
 44 cd05147 RIO1_euk RIO kinase fa  98.8   8E-08   2E-12   70.2  10.7  133   30-214     5-166 (190)
 45 cd05145 RIO1_like RIO kinase f  98.8 6.9E-08 1.8E-12   70.7  10.4  133   30-214     5-166 (190)
 46 pfam06293 Kdo Lipopolysacchari  98.8 1.4E-07 3.5E-12   68.7  11.2  165   37-248    19-206 (206)
 47 smart00090 RIO RIO-like kinase  98.8 1.9E-07 4.8E-12   67.9  11.6  156    3-214    11-197 (237)
 48 cd05146 RIO3_euk RIO kinase fa  98.7 4.2E-07 1.1E-11   65.6  12.3  100   63-214    74-173 (197)
 49 COG1718 RIO1 Serine/threonine   98.7 4.2E-07 1.1E-11   65.6  12.3  157    3-214    31-215 (268)
 50 KOG3087 consensus               98.6 1.4E-06 3.6E-11   62.2  12.8  162   26-251    11-204 (229)
 51 pfam01163 RIO1 RIO1 family. Th  98.6 3.4E-07 8.5E-12   66.2   7.9   97   63-214    54-152 (186)
 52 pfam06176 WaaY Lipopolysacchar  98.5 2.1E-06 5.5E-11   61.0  11.5  163    2-217    11-184 (229)
 53 COG0478 RIO-like serine/threon  98.5 1.7E-06 4.4E-11   61.7  10.8  128   29-214    98-251 (304)
 54 PRK10359 lipopolysaccharide co  98.4   7E-06 1.8E-10   57.7  11.9  161    3-216    12-183 (232)
 55 KOG2270 consensus               98.3 6.3E-06 1.6E-10   58.0   9.9  143   19-213   140-312 (520)
 56 COG2187 Uncharacterized protei  98.3 1.7E-05 4.3E-10   55.2  11.8  155  112-272   123-296 (337)
 57 TIGR01767 MTRK 5-methylthiorib  98.2 5.3E-06 1.3E-10   58.5   6.2  187   29-225     2-234 (386)
 58 cd06614 STKc_PAK Serine/threon  98.2 6.6E-05 1.7E-09   51.4  11.6  154   11-213     7-165 (287)
 59 cd06654 STKc_PAK1 Serine/threo  98.1 0.00023 5.8E-09   47.9  13.6  154    9-214     2-165 (296)
 60 KOG2268 consensus               98.1 8.1E-06 2.1E-10   57.3   5.6  123   33-214   103-251 (465)
 61 cd07836 STKc_Pho85 The catalyt  98.0 0.00017 4.2E-09   48.8  11.8  138   27-213     5-148 (284)
 62 cd06612 STKc_MST1_2 Serine/thr  98.0 0.00017 4.2E-09   48.8  11.7  139   27-214     8-148 (256)
 63 TIGR02457 TreS_Cterm trehalose  98.0 3.2E-05 8.3E-10   53.4   7.9  189   16-211   167-435 (568)
 64 cd07865 STKc_CDK9 The catalyti  98.0  0.0002 5.2E-09   48.2  11.8  150   21-213    11-167 (310)
 65 cd06658 STKc_PAK5 Serine/threo  98.0 0.00037 9.4E-09   46.5  12.7  155    7-213     2-166 (292)
 66 cd07861 STKc_CDK1_euk The cata  98.0 0.00013 3.3E-09   49.5  10.3  139   27-213     5-149 (285)
 67 cd06655 STKc_PAK2 Serine/threo  98.0 0.00029 7.4E-09   47.2  11.9  139   24-214    21-164 (296)
 68 cd06656 STKc_PAK3 Serine/threo  98.0 0.00067 1.7E-08   44.9  13.7  138   24-213    21-163 (297)
 69 cd07846 STKc_CDKL2_3 The catal  98.0 0.00018 4.6E-09   48.5  10.8  137   27-213     6-148 (286)
 70 cd06639 STKc_myosinIIIB Serine  98.0 0.00019 4.7E-09   48.5  10.8  159    7-214    12-177 (291)
 71 cd06657 STKc_PAK4 Serine/threo  98.0 0.00036 9.2E-09   46.6  12.2  137   26-214    24-165 (292)
 72 cd07847 STKc_CDKL1_4 The catal  98.0 0.00021 5.3E-09   48.2  11.0  137   27-213     6-148 (286)
 73 cd06648 STKc_PAK_II Serine/thr  98.0 0.00019 4.7E-09   48.5  10.8  137   25-213    22-163 (285)
 74 cd06636 STKc_MAP4K4_6 Serine/t  97.9 0.00033 8.4E-09   46.9  11.5  149   21-214    15-170 (282)
 75 cd00180 S_TKc Serine/Threonine  97.9 0.00032   8E-09   47.0  11.2  137   28-214     6-148 (256)
 76 cd07860 STKc_CDK2_3 The cataly  97.9 0.00031 7.9E-09   47.0  10.8  137   27-213     5-148 (284)
 77 cd07864 STKc_CDK12 The catalyt  97.9 0.00068 1.7E-08   44.8  12.4  145   27-213    12-164 (302)
 78 cd07839 STKc_CDK5 The catalyti  97.8 0.00084 2.1E-08   44.2  12.4  137   27-213     5-147 (284)
 79 cd06609 STKc_MST3_like Serine/  97.8 0.00056 1.4E-08   45.4  11.4  135   28-213     7-146 (274)
 80 cd06643 STKc_SLK Serine/threon  97.8  0.0008   2E-08   44.4  12.2  136   28-214    11-152 (282)
 81 cd05610 STKc_MASTL STKc_MASTL:  97.8 0.00032 8.2E-09   46.9  10.0  144   21-214     3-153 (669)
 82 cd05613 STKc_MSK1_N STKc_MSK1_  97.8 0.00026 6.6E-09   47.5   9.4  136   28-213     6-153 (290)
 83 cd07829 STKc_CDK_like The cata  97.8 0.00055 1.4E-08   45.4  11.1  137   27-213     4-146 (282)
 84 cd06608 STKc_myosinIII_like Se  97.8  0.0008   2E-08   44.3  11.8  147   24-213     8-161 (275)
 85 pfam04655 APH_6_hur Aminoglyco  97.8   0.002 5.1E-08   41.8  13.7  218   30-262    10-237 (253)
 86 cd07866 STKc_BUR1 The catalyti  97.8 0.00056 1.4E-08   45.4  10.8  148   23-213     9-163 (311)
 87 cd06647 STKc_PAK_I Serine/thre  97.8 0.00049 1.2E-08   45.8  10.5  139   24-213    21-163 (293)
 88 cd06621 PKc_MAPKK_Pek1_like Pr  97.8  0.0012   3E-08   43.3  12.4  146   24-213     3-153 (287)
 89 cd07843 STKc_CDC2L1 The cataly  97.8 0.00076 1.9E-08   44.5  11.3  139   26-213     9-154 (293)
 90 PRK10593 hypothetical protein;  97.8 6.7E-05 1.7E-09   51.3   5.8  234   23-283    15-272 (297)
 91 cd07841 STKc_CDK7 The catalyti  97.8 0.00071 1.8E-08   44.7  11.0  136   28-214     6-151 (298)
 92 cd06641 STKc_MST3 Serine/threo  97.7  0.0006 1.5E-08   45.2  10.5  137   25-213     7-149 (277)
 93 cd07833 STKc_CDKL The catalyti  97.7 0.00059 1.5E-08   45.2  10.4  138   27-214     6-149 (288)
 94 cd06644 STKc_STK10_LOK Serine/  97.7   0.002 5.1E-08   41.8  13.1  136   27-213    17-158 (292)
 95 cd05611 STKc_Rim15_like STKc_R  97.7  0.0011 2.9E-08   43.4  11.8  139   28-215     2-147 (260)
 96 cd07835 STKc_CDK1_like The cat  97.7 0.00073 1.9E-08   44.6  10.8  138   27-213     4-147 (283)
 97 cd07848 STKc_CDKL5 The catalyt  97.7 0.00087 2.2E-08   44.1  11.0  136   28-213     7-148 (287)
 98 cd06620 PKc_MAPKK_Byr1_like Pr  97.7  0.0019 4.9E-08   41.9  12.7  140   25-213     8-152 (284)
 99 cd05572 STKc_cGK_PKG STKc_cGK_  97.7 0.00089 2.3E-08   44.1  10.9  131   32-213     3-141 (262)
100 smart00220 S_TKc Serine/Threon  97.7  0.0016 4.1E-08   42.4  12.3  126   38-214     5-136 (244)
101 cd06606 STKc_MAPKKK Serine/thr  97.7 0.00057 1.5E-08   45.3   9.9  136   29-213     7-148 (259)
102 cd06637 STKc_TNIK Serine/threo  97.7  0.0012 3.1E-08   43.2  11.6  148   22-214     6-160 (272)
103 PTZ00263 protein kinase A cata  97.7 0.00069 1.8E-08   44.8  10.3  145   19-213    15-166 (329)
104 cd07838 STKc_CDK4_6_like The c  97.7  0.0011 2.9E-08   43.4  11.3  144   27-213     4-155 (287)
105 cd06640 STKc_MST4 Serine/threo  97.7  0.0012 3.1E-08   43.2  11.5  138   25-213     7-149 (277)
106 cd07874 STKc_JNK3 The catalyti  97.7 0.00048 1.2E-08   45.8   9.4  146   15-213    15-167 (355)
107 cd07844 STKc_PCTAIRE_like The   97.7  0.0018 4.6E-08   42.1  12.3  138   25-213     8-151 (291)
108 cd06642 STKc_STK25_YSK1 Serine  97.7  0.0011 2.8E-08   43.4  11.3  137   25-213     7-149 (277)
109 cd05578 STKc_Yank1 STKc_Yank1:  97.7  0.0013 3.4E-08   42.9  11.5  136   28-214     6-149 (258)
110 PRK04750 ubiB putative ubiquin  97.7 0.00035   9E-09   46.7   8.6   32  182-214   277-313 (540)
111 cd06607 STKc_TAO Serine/threon  97.7 0.00086 2.2E-08   44.2  10.5  153   11-213     3-163 (307)
112 cd05574 STKc_phototropin_like   97.7  0.0014 3.7E-08   42.7  11.6  134   27-213     6-151 (315)
113 cd05112 PTKc_Itk Catalytic Dom  97.7  0.0027 6.9E-08   40.9  13.0  141   24-213     6-148 (256)
114 cd06917 STKc_NAK1_like Serine/  97.7  0.0016 4.1E-08   42.4  11.7  138   28-214     7-150 (277)
115 cd07831 STKc_MOK The catalytic  97.7  0.0014 3.7E-08   42.7  11.5  138   28-213     5-147 (282)
116 cd05122 PKc_STE Protein Kinase  97.7 0.00062 1.6E-08   45.1   9.6  136   28-213     6-145 (253)
117 cd05118 STKc_CMGC The catalyti  97.7 0.00034 8.7E-09   46.8   8.2  137   27-213     4-146 (283)
118 COG4857 Predicted kinase [Gene  97.7 0.00015 3.8E-09   49.1   6.4   45  184-229   228-273 (408)
119 cd06659 STKc_PAK6 Serine/threo  97.7  0.0021 5.3E-08   41.7  12.2  136   26-213    25-165 (297)
120 cd07832 STKc_CCRK The catalyti  97.7  0.0015 3.8E-08   42.6  11.4  136   28-213     6-147 (286)
121 cd05598 STKc_LATS STKc_LATS: S  97.6  0.0026 6.5E-08   41.1  12.5  136   27-212     6-148 (376)
122 KOG1235 consensus               97.6  0.0003 7.5E-09   47.2   7.5   33  182-214   318-354 (538)
123 cd07853 STKc_NLK The catalytic  97.6 0.00086 2.2E-08   44.2   9.6  140   27-213     5-151 (372)
124 cd06649 PKc_MEK2 MEK2 (MAPKK2   97.6  0.0053 1.3E-07   39.1  13.6  138   26-213     9-152 (331)
125 cd05577 STKc_GRK STKc_GRK: Ser  97.6  0.0011 2.9E-08   43.3  10.2  133   32-213     3-143 (277)
126 cd07840 STKc_CDK9_like The cat  97.6  0.0016 4.1E-08   42.4  10.9  139   27-213     4-148 (287)
127 cd06615 PKc_MEK MEK1/2 (MAPK k  97.6  0.0036 9.2E-08   40.1  12.7  139   26-213     5-148 (308)
128 cd05123 STKc_AGC STKc_AGC: Ser  97.6  0.0014 3.6E-08   42.8  10.6  131   32-213     3-141 (250)
129 cd05082 PTKc_Csk Catalytic Dom  97.6  0.0016   4E-08   42.5  10.9  148   27-221    11-158 (256)
130 pfam00069 Pkinase Protein kina  97.6 0.00087 2.2E-08   44.1   9.6  137   28-214     5-147 (260)
131 cd06638 STKc_myosinIIIA Serine  97.6  0.0025 6.3E-08   41.2  11.8  145   26-214    22-173 (286)
132 cd06626 STKc_MEKK4 Serine/thre  97.6  0.0012 3.1E-08   43.2  10.2  134   30-213     8-147 (264)
133 cd07845 STKc_CDK10 The catalyt  97.6  0.0012 3.1E-08   43.2  10.2  141   25-213    10-156 (309)
134 cd07863 STKc_CDK4 The catalyti  97.6 0.00094 2.4E-08   43.9   9.5  144   27-214     5-157 (288)
135 cd05059 PTKc_Tec_like Catalyti  97.6  0.0027 6.8E-08   41.0  11.8  141   24-213     6-148 (256)
136 cd05571 STKc_PKB STKc_PKB: Ser  97.6  0.0018 4.6E-08   42.1  10.9  134   31-214     4-144 (323)
137 cd07869 STKc_PFTAIRE1 The cata  97.6  0.0034 8.7E-08   40.3  12.3  137   26-213     9-151 (303)
138 COG0661 AarF Predicted unusual  97.6 0.00073 1.9E-08   44.6   8.8   33  182-214   282-314 (517)
139 cd06605 PKc_MAPKK Protein kina  97.6  0.0061 1.6E-07   38.7  13.6  142   25-214     4-150 (265)
140 cd05599 STKc_NDR_like STKc_NDR  97.6  0.0048 1.2E-07   39.3  13.0  137   27-213     6-149 (364)
141 cd05084 PTKc_Fes Catalytic Dom  97.6  0.0041 1.1E-07   39.8  12.6  135   30-213     3-142 (252)
142 cd05617 STKc_aPKC_zeta STKc_aP  97.6   0.001 2.6E-08   43.6   9.5  136   30-214     3-145 (327)
143 cd05629 STKc_NDR_like_fungal S  97.6  0.0054 1.4E-07   39.0  13.1  136   27-212     6-148 (377)
144 cd05614 STKc_MSK2_N STKc_MSK2_  97.5 0.00082 2.1E-08   44.3   8.9  136   28-213     6-153 (332)
145 cd05626 STKc_LATS2 STKc_LATS2:  97.5  0.0033 8.3E-08   40.4  11.9  138   26-213     5-149 (381)
146 cd05618 STKc_aPKC_iota STKc_aP  97.5  0.0021 5.4E-08   41.6  10.9  135   31-214     4-145 (329)
147 cd06650 PKc_MEK1 MEK1 (MAPKK1   97.5   0.005 1.3E-07   39.2  12.7  140   25-213     8-152 (333)
148 cd05113 PTKc_Btk_Bmx Catalytic  97.5  0.0018 4.5E-08   42.1  10.4  139   26-213     8-148 (256)
149 cd06616 PKc_MKK4 Protein kinas  97.5  0.0077   2E-07   38.0  13.7  147   23-214     5-157 (288)
150 cd07867 STKc_CDC2L6 The cataly  97.5 0.00064 1.6E-08   45.0   8.1  143   30-213     9-160 (317)
151 cd06622 PKc_MAPKK_PBS2_like Pr  97.5  0.0028   7E-08   40.9  11.3  141   26-213     5-151 (286)
152 cd07855 STKc_ERK5 The catalyti  97.5   0.003 7.7E-08   40.6  11.5  142   25-212     8-156 (336)
153 cd06619 PKc_MKK5 Protein kinas  97.5  0.0019 4.9E-08   41.9  10.5  130   29-213     8-143 (279)
154 cd07830 STKc_MAK_like The cata  97.5  0.0012 3.1E-08   43.2   9.5  138   28-213     5-147 (283)
155 cd05625 STKc_LATS1 STKc_LATS1:  97.5  0.0039   1E-07   39.9  12.1  137   26-212     5-148 (382)
156 cd06610 STKc_OSR1_SPAK Serine/  97.5  0.0021 5.2E-08   41.7  10.5  138   28-213     7-150 (266)
157 cd06633 STKc_TAO3 Serine/threo  97.5  0.0023 5.9E-08   41.4  10.6  155   10-214     8-170 (313)
158 cd06613 STKc_MAP4K3_like Serin  97.5  0.0029 7.3E-08   40.8  11.1  137   27-213     8-148 (261)
159 cd05601 STKc_CRIK STKc_CRIK: S  97.5  0.0069 1.7E-07   38.3  13.0  136   28-213     7-150 (330)
160 cd07872 STKc_PCTAIRE2 The cata  97.5  0.0074 1.9E-07   38.1  13.0  139   24-213     8-152 (309)
161 cd06645 STKc_MAP4K3 Serine/thr  97.5  0.0039   1E-07   39.9  11.6  137   27-213    14-154 (267)
162 cd06624 STKc_ASK Serine/threon  97.5  0.0062 1.6E-07   38.6  12.6  144   23-213     9-157 (268)
163 cd05041 PTKc_Fes_like Catalyti  97.5  0.0038 9.6E-08   40.0  11.4  136   29-213     2-141 (251)
164 cd05594 STKc_PKB_alpha STKc_PK  97.5  0.0026 6.6E-08   41.1  10.6  134   31-214     4-145 (324)
165 cd07875 STKc_JNK1 The catalyti  97.5  0.0025 6.3E-08   41.2  10.5  140   27-214    29-175 (364)
166 cd05621 STKc_ROCK2 STKc_ROCK2:  97.5  0.0017 4.4E-08   42.2   9.7  142   20-212    41-189 (370)
167 cd07870 STKc_PFTAIRE2 The cata  97.5   0.008   2E-07   37.9  13.1  138   25-213     8-151 (291)
168 cd05589 STKc_PKN STKc_PKN: Ser  97.5  0.0036 9.1E-08   40.1  11.3  140   27-214     4-150 (324)
169 cd07868 STKc_CDK8 The catalyti  97.5 0.00074 1.9E-08   44.6   7.8  143   30-213     9-160 (317)
170 smart00221 STYKc Protein kinas  97.5  0.0066 1.7E-07   38.4  12.6  138   28-214     5-147 (225)
171 cd05612 STKc_PRKX_like STKc_PR  97.5  0.0021 5.4E-08   41.6  10.1  136   27-213     6-149 (291)
172 PTZ00266 NIMA-related protein   97.5  0.0011 2.9E-08   43.4   8.6  156   21-213     8-177 (484)
173 cd07873 STKc_PCTAIRE1 The cata  97.4   0.007 1.8E-07   38.3  12.6  138   25-213     9-152 (301)
174 cd05052 PTKc_Abl Catalytic Dom  97.4  0.0042 1.1E-07   39.7  11.4  139   27-213    11-152 (263)
175 cd06627 STKc_Cdc7_like Serine/  97.4  0.0037 9.5E-08   40.0  11.1  134   30-213     8-147 (254)
176 cd05580 STKc_PKA STKc_PKA: Ser  97.4  0.0033 8.3E-08   40.4  10.8  136   28-213     7-149 (290)
177 cd05582 STKc_RSK_N STKc_RSK_N:  97.4  0.0018 4.5E-08   42.1   9.4  136   28-213     2-146 (318)
178 cd07871 STKc_PCTAIRE3 The cata  97.4  0.0094 2.4E-07   37.4  13.1  138   25-213     8-151 (288)
179 cd05588 STKc_aPKC STKc_aPKC: S  97.4  0.0028 7.3E-08   40.8  10.5  135   30-214     3-145 (329)
180 cd05600 STKc_Sid2p_Dbf2p STKc_  97.4  0.0064 1.6E-07   38.5  12.2  136   27-213     6-149 (333)
181 cd06611 STKc_SLK_like Serine/t  97.4  0.0051 1.3E-07   39.2  11.7  137   27-214    10-152 (280)
182 cd07856 STKc_Sty1_Hog1 The cat  97.4  0.0044 1.1E-07   39.6  11.3  141   23-214    11-157 (328)
183 cd06646 STKc_MAP4K5 Serine/thr  97.4  0.0064 1.6E-07   38.5  12.1  137   28-214    15-155 (267)
184 cd06632 STKc_MEKK1_plant Serin  97.4  0.0021 5.4E-08   41.6   9.7  135   30-214     8-151 (258)
185 cd05622 STKc_ROCK1 STKc_ROCK1:  97.4  0.0035 8.9E-08   40.2  10.7  139   23-213    44-190 (371)
186 cd05583 STKc_MSK_N STKc_MSK_N:  97.4  0.0026 6.6E-08   41.1   9.9  136   28-213     6-153 (288)
187 cd05581 STKc_PDK1 STKc_PDK1: S  97.4  0.0039 9.9E-08   39.9  10.8  137   28-213     7-150 (279)
188 cd05609 STKc_MAST STKc_MAST: S  97.4  0.0037 9.4E-08   40.1  10.6  136   27-213     6-149 (305)
189 cd06625 STKc_MEKK3_like Serine  97.4  0.0061 1.6E-07   38.6  11.7  140   18-213     3-152 (263)
190 cd05605 STKc_GRK4_like STKc_GR  97.4  0.0041 1.1E-07   39.7  10.8  138   28-213     6-150 (285)
191 cd05573 STKc_ROCK_NDR_like STK  97.4  0.0057 1.5E-07   38.8  11.5  137   27-213     6-149 (354)
192 cd05585 STKc_YPK1_like STKc_YP  97.4  0.0054 1.4E-07   39.0  11.4  133   32-214     3-142 (312)
193 cd05072 PTKc_Lyn Catalytic Dom  97.4  0.0092 2.4E-07   37.5  12.5  142   24-213     8-151 (261)
194 cd07849 STKc_ERK1_2_like The c  97.4  0.0036 9.2E-08   40.1  10.4  141   25-213     8-154 (336)
195 cd06634 STKc_TAO2 Serine/threo  97.4  0.0063 1.6E-07   38.6  11.6  139   25-213    18-163 (308)
196 cd05627 STKc_NDR2 STKc_NDR2: S  97.4   0.013 3.4E-07   36.4  13.3  137   27-213     6-149 (360)
197 cd06623 PKc_MAPKK_plant_like P  97.4   0.011 2.8E-07   37.0  12.8  139   27-214     6-149 (264)
198 cd05593 STKc_PKB_gamma STKc_PK  97.4  0.0046 1.2E-07   39.4  10.8  132   32-214     5-144 (325)
199 cd05085 PTKc_Fer Catalytic Dom  97.4  0.0094 2.4E-07   37.4  12.3  133   32-213     5-141 (250)
200 cd06631 STKc_YSK4 Serine/threo  97.4  0.0032 8.2E-08   40.5   9.9  132   32-213    10-150 (265)
201 cd06618 PKc_MKK7 Protein kinas  97.3   0.014 3.7E-07   36.3  13.4  145   21-213    14-163 (296)
202 cd05570 STKc_PKC STKc_PKC: Ser  97.3  0.0082 2.1E-07   37.8  11.8  135   30-213     3-144 (318)
203 PRK13184 pknD serine/threonine  97.3  0.0043 1.1E-07   39.6  10.3  145   28-212     8-160 (933)
204 cd05633 STKc_GRK3 STKc_GRK3: S  97.3  0.0042 1.1E-07   39.7  10.2  135   32-213     4-145 (279)
205 cd07854 STKc_MAPK4_6 The catal  97.3  0.0046 1.2E-07   39.5  10.4  147   23-213     6-163 (342)
206 cd07850 STKc_JNK The catalytic  97.3  0.0059 1.5E-07   38.7  10.9  143   15-213    14-166 (353)
207 cd05595 STKc_PKB_beta STKc_PKB  97.3  0.0079   2E-07   37.9  11.5  133   31-214     4-144 (323)
208 cd05608 STKc_GRK1 STKc_GRK1: S  97.3  0.0081 2.1E-07   37.9  11.6  135   33-213     4-145 (280)
209 KOG0578 consensus               97.3  0.0048 1.2E-07   39.3  10.4  153    7-215   253-419 (550)
210 cd05114 PTKc_Tec_Rlk Catalytic  97.3  0.0049 1.3E-07   39.2  10.4  141   24-213     6-148 (256)
211 cd07878 STKc_p38beta_MAPK11 Th  97.3    0.01 2.6E-07   37.2  12.0  143   25-214    18-167 (343)
212 cd06653 STKc_MEKK3_like_1 Seri  97.3  0.0023 5.8E-08   41.4   8.6  135   30-213    10-154 (264)
213 cd05591 STKc_nPKC_epsilon STKc  97.3  0.0035 8.9E-08   40.2   9.6  134   31-213     4-144 (321)
214 cd05584 STKc_p70S6K STKc_p70S6  97.3  0.0045 1.2E-07   39.5  10.1  135   28-213     2-148 (323)
215 cd07879 STKc_p38delta_MAPK13 T  97.3  0.0055 1.4E-07   38.9  10.6  142   25-214    18-166 (342)
216 cd07880 STKc_p38gamma_MAPK12 T  97.3   0.005 1.3E-07   39.2  10.3  143   25-214    18-167 (343)
217 cd07862 STKc_CDK6 The catalyti  97.3   0.011 2.7E-07   37.1  12.0  143   27-213     6-158 (290)
218 pfam07714 Pkinase_Tyr Protein   97.3  0.0092 2.4E-07   37.5  11.6  136   29-213     6-150 (258)
219 cd07852 STKc_MAPK15 The cataly  97.3   0.002 5.1E-08   41.8   8.2  143   14-212     4-154 (337)
220 cd05592 STKc_nPKC_theta_delta   97.3  0.0033 8.4E-08   40.4   9.3  134   31-213     4-144 (316)
221 cd05587 STKc_cPKC STKc_cPKC:    97.3  0.0061 1.6E-07   38.6  10.6  137   27-213     5-149 (324)
222 cd06635 STKc_TAO1 Serine/threo  97.3  0.0024 6.2E-08   41.2   8.5  157    7-214     9-174 (317)
223 cd07851 STKc_p38 The catalytic  97.3   0.011 2.7E-07   37.1  11.8  142   25-213    18-166 (343)
224 cd05068 PTKc_Frk_like Catalyti  97.3   0.011 2.7E-07   37.1  11.7  141   25-213     9-151 (261)
225 cd05039 PTKc_Csk_like Catalyti  97.3  0.0041 1.1E-07   39.7   9.5  140   28-215    12-152 (256)
226 cd05623 STKc_MRCK_alpha STKc_M  97.2    0.01 2.6E-07   37.2  11.5  136   27-212     6-149 (332)
227 cd05038 PTKc_Jak_rpt2 Catalyti  97.2   0.015 3.8E-07   36.1  12.4  143   24-213     6-157 (279)
228 cd05603 STKc_SGK2 STKc_SGK2: S  97.2  0.0059 1.5E-07   38.7  10.1  135   30-214     3-145 (321)
229 PTZ00284 protein kinase; Provi  97.2   0.015 3.8E-07   36.2  12.1   32  184-216   251-299 (467)
230 cd06628 STKc_MAPKKK_Byr2_like   97.2   0.005 1.3E-07   39.2   9.7  132   32-213    10-154 (267)
231 cd06651 STKc_MEKK3 Serine/thre  97.2  0.0028 7.1E-08   40.9   8.4  142   18-213     3-154 (266)
232 cd05083 PTKc_Chk Catalytic Dom  97.2   0.016 4.2E-07   35.9  12.3  139   30-217    14-152 (254)
233 KOG0592 consensus               97.2 0.00082 2.1E-08   44.3   5.5  134   30-214    81-223 (604)
234 cd05624 STKc_MRCK_beta STKc_MR  97.2   0.016   4E-07   36.0  12.0  137   27-212     6-149 (331)
235 cd05034 PTKc_Src_like Catalyti  97.2   0.014 3.6E-07   36.3  11.8  139   27-213    11-151 (261)
236 cd07858 STKc_TEY_MAPK_plant Th  97.2   0.005 1.3E-07   39.2   9.4  142   25-213     8-156 (337)
237 COG3281 Ble Uncharacterized pr  97.2  0.0015 3.9E-08   42.5   6.7  199   47-252   108-381 (438)
238 cd05586 STKc_Sck1_like STKc_Sc  97.2    0.01 2.6E-07   37.2  10.8  134   32-213     3-144 (330)
239 cd05606 STKc_beta_ARK STKc_bet  97.1   0.012   3E-07   36.8  11.0  134   32-213     4-145 (278)
240 cd07834 STKc_MAPK The catalyti  97.1  0.0075 1.9E-07   38.1   9.9  137   28-212     6-150 (330)
241 cd00192 PTKc Catalytic Domain   97.1    0.02 5.1E-07   35.3  11.8  142   30-213     3-152 (261)
242 cd05615 STKc_cPKC_alpha STKc_c  97.1  0.0061 1.5E-07   38.7   9.1  136   28-213     6-149 (323)
243 cd05604 STKc_SGK3 STKc_SGK3: S  97.1   0.011 2.9E-07   36.9  10.4  134   31-214     4-145 (325)
244 cd05607 STKc_GRK7 STKc_GRK7: S  97.1  0.0092 2.4E-07   37.5   9.9  132   33-213     4-143 (277)
245 smart00219 TyrKc Tyrosine kina  97.1   0.015 3.9E-07   36.1  11.0  136   30-213     7-151 (258)
246 cd06652 STKc_MEKK2 Serine/thre  97.1  0.0064 1.6E-07   38.5   8.9  143   18-213     3-154 (265)
247 cd05628 STKc_NDR1 STKc_NDR1: S  97.0   0.029 7.4E-07   34.3  13.2  135   27-212     6-148 (363)
248 cd07842 STKc_CDK8_like The cat  97.0  0.0092 2.4E-07   37.5   9.6  141   28-213     6-160 (315)
249 cd05619 STKc_nPKC_theta STKc_n  97.0    0.01 2.6E-07   37.2   9.7  135   30-213     3-144 (316)
250 cd07837 STKc_CdkB_plant The ca  97.0  0.0079   2E-07   37.9   9.1  144   27-213     6-159 (295)
251 cd05073 PTKc_Hck Catalytic Dom  97.0   0.026 6.7E-07   34.5  11.8  138   27-213    11-150 (260)
252 cd05631 STKc_GRK4 STKc_GRK4: S  97.0   0.019 4.7E-07   35.5  11.0  137   27-213     5-150 (285)
253 cd05616 STKc_cPKC_beta STKc_cP  97.0  0.0084 2.2E-07   37.7   9.0  136   28-213     6-149 (323)
254 cd05602 STKc_SGK1 STKc_SGK1: S  97.0    0.01 2.7E-07   37.1   9.5  133   31-213     4-144 (325)
255 cd05590 STKc_nPKC_eta STKc_nPK  97.0    0.02   5E-07   35.4  10.9  134   31-213     4-144 (320)
256 cd05632 STKc_GRK5 STKc_GRK5: S  97.0   0.016 4.1E-07   35.9  10.4  138   27-213     5-150 (285)
257 cd07859 STKc_TDY_MAPK_plant Th  97.0   0.018 4.7E-07   35.6  10.7  139   28-213     6-151 (338)
258 cd05046 PTK_CCK4 Catalytic Dom  97.0   0.033 8.3E-07   33.9  12.8  150   23-213     6-165 (275)
259 cd05070 PTKc_Fyn_Yrk Catalytic  97.0   0.033 8.4E-07   33.9  12.3  142   23-213     7-150 (260)
260 cd05575 STKc_SGK STKc_SGK: Ser  97.0   0.014 3.5E-07   36.4   9.9  134   30-213     3-144 (323)
261 cd05630 STKc_GRK6 STKc_GRK6: S  96.9   0.025 6.4E-07   34.7  11.1  138   27-213     5-150 (285)
262 KOG0615 consensus               96.9  0.0047 1.2E-07   39.4   7.3   31  183-213   294-327 (475)
263 cd05579 STKc_MAST_like STKc_MA  96.9    0.02 5.1E-07   35.3  10.3  133   31-213     2-141 (265)
264 cd07877 STKc_p38alpha_MAPK14 T  96.9   0.016 4.1E-07   35.9   9.7  143   25-214    20-169 (345)
265 cd05576 STKc_RPK118_like STKc_  96.9   0.015 3.8E-07   36.1   9.4  124   37-213     8-133 (237)
266 cd05596 STKc_ROCK STKc_ROCK: S  96.9  0.0089 2.3E-07   37.6   8.2  140   22-212    43-189 (370)
267 cd05620 STKc_nPKC_delta STKc_n  96.8    0.02 5.1E-07   35.3   9.8  133   31-213     4-144 (316)
268 PTZ00283 serine/threonine prot  96.8   0.028 7.2E-07   34.3  10.5  137   30-213    40-191 (496)
269 cd05081 PTKc_Jak2_Jak3_rpt2 Ca  96.8   0.046 1.2E-06   32.9  12.5  144   24-214     6-157 (284)
270 cd05067 PTKc_Lck_Blk Catalytic  96.8   0.048 1.2E-06   32.9  12.2  141   24-213     8-150 (260)
271 PRK12274 serine/threonine prot  96.7   0.011 2.9E-07   36.9   8.0   81  184-277    90-173 (198)
272 cd05088 PTKc_Tie2 Catalytic Do  96.7   0.051 1.3E-06   32.7  12.2  149   28-213    13-172 (303)
273 KOG0605 consensus               96.7    0.02 5.1E-07   35.3   9.2   28  184-212   260-288 (550)
274 TIGR01982 UbiB 2-polyprenylphe  96.7  0.0022 5.5E-08   41.6   4.2   47  181-228   284-337 (452)
275 KOG0667 consensus               96.7  0.0024   6E-08   41.3   4.3   31  184-215   308-341 (586)
276 cd05045 PTKc_RET Catalytic Dom  96.7   0.055 1.4E-06   32.5  11.9   30  184-213   141-170 (285)
277 cd05148 PTKc_Srm_Brk Catalytic  96.7   0.056 1.4E-06   32.4  12.7  139   27-213    11-152 (261)
278 cd05060 PTKc_Syk_like Catalyti  96.7   0.057 1.5E-06   32.4  11.9  133   30-213     3-143 (257)
279 cd05057 PTKc_EGFR_like Catalyt  96.7   0.058 1.5E-06   32.3  13.5  139   25-213    10-157 (279)
280 cd06617 PKc_MKK3_6 Protein kin  96.7   0.058 1.5E-06   32.3  13.3  141   27-213     6-152 (280)
281 cd05050 PTKc_Musk Catalytic Do  96.6   0.021 5.3E-07   35.2   8.8  163   23-213     6-178 (288)
282 cd05053 PTKc_FGFR Catalytic Do  96.6   0.049 1.2E-06   32.8  10.6  149   28-213    18-181 (294)
283 cd05049 PTKc_Trk Catalytic Dom  96.6   0.031 7.8E-07   34.1   9.5  151   27-213    10-170 (280)
284 cd05048 PTKc_Ror Catalytic Dom  96.6   0.038 9.7E-07   33.5   9.9  155   23-213     6-172 (283)
285 cd05090 PTKc_Ror1 Catalytic Do  96.6   0.053 1.4E-06   32.6  10.4  153   23-213     6-172 (283)
286 cd05032 PTKc_InsR_like Catalyt  96.5   0.071 1.8E-06   31.7  13.0  149   25-213     9-167 (277)
287 KOG1166 consensus               96.5   0.038 9.8E-07   33.5   9.3   51  160-213   792-849 (974)
288 KOG0603 consensus               96.4  0.0057 1.5E-07   38.8   4.8   34  184-218   434-469 (612)
289 cd05071 PTKc_Src Catalytic Dom  96.4   0.081 2.1E-06   31.4  12.1  138   27-213    11-150 (262)
290 cd05040 PTKc_Ack_like Catalyti  96.4   0.084 2.1E-06   31.3  12.5  135   30-213     3-145 (257)
291 KOG0581 consensus               96.4   0.039   1E-06   33.4   8.8   29  184-213   198-227 (364)
292 cd05109 PTKc_HER2 Catalytic Do  96.3   0.093 2.4E-06   31.0  13.7  140   24-213     9-157 (279)
293 cd05063 PTKc_EphR_A2 Catalytic  96.3   0.096 2.5E-06   30.9  11.9  137   28-213    11-155 (268)
294 cd05055 PTKc_PDGFR Catalytic D  96.2   0.064 1.6E-06   32.0   9.3  139   28-213    41-189 (302)
295 cd05042 PTKc_Aatyk Catalytic D  96.2    0.11 2.8E-06   30.5  12.3   40  166-212   108-147 (269)
296 cd05080 PTKc_Tyk2_rpt2 Catalyt  96.2    0.11 2.8E-06   30.5  12.5  140   24-213     6-155 (283)
297 cd05069 PTKc_Yes Catalytic Dom  96.2    0.11 2.8E-06   30.5  12.9  138   27-213    11-150 (260)
298 KOG0032 consensus               96.1   0.077   2E-06   31.5   9.2  144   16-217    34-191 (382)
299 cd05079 PTKc_Jak1_rpt2 Catalyt  96.0    0.14 3.5E-06   29.9  13.3  142   24-213     6-157 (284)
300 cd07876 STKc_JNK2 The catalyti  96.0   0.017 4.4E-07   35.7   5.3  146   15-213    19-171 (359)
301 KOG2269 consensus               95.9   0.043 1.1E-06   33.2   7.0   76  185-263   404-492 (531)
302 cd05597 STKc_DMPK_like STKc_DM  95.9   0.023 5.8E-07   35.0   5.5  135   28-212     7-149 (331)
303 cd05047 PTKc_Tie Catalytic Dom  95.8    0.16   4E-06   29.5  12.1  145   32-213     5-160 (270)
304 cd05110 PTKc_HER4 Catalytic Do  95.8    0.16 4.1E-06   29.5  12.2  140   24-213     9-157 (303)
305 cd05086 PTKc_Aatyk2 Catalytic   95.8    0.16 4.2E-06   29.4  12.5   29  184-212   118-146 (268)
306 cd05062 PTKc_IGF-1R Catalytic   95.7    0.18 4.5E-06   29.2  12.1   30  184-213   138-167 (277)
307 cd05065 PTKc_EphR_B Catalytic   95.7    0.18 4.5E-06   29.2  11.0  137   28-213    10-154 (269)
308 KOG0595 consensus               95.7    0.12 3.1E-06   30.2   8.8  137   28-214    16-164 (429)
309 cd05051 PTKc_DDR Catalytic Dom  95.6    0.19 4.8E-06   29.0  13.1  127   48-213    49-178 (296)
310 cd05044 PTKc_c-ros Catalytic D  95.6    0.19 4.9E-06   28.9  12.0  124   47-213    28-160 (270)
311 cd06629 STKc_MAPKKK_Bck1_like   95.5   0.032 8.2E-07   34.0   5.3  136   31-216    10-159 (272)
312 KOG0616 consensus               95.5    0.17 4.4E-06   29.2   8.9  146   19-213    41-192 (355)
313 cd05056 PTKc_FAK Catalytic Dom  95.4   0.045 1.2E-06   33.0   5.8  135   29-213    13-155 (270)
314 cd05061 PTKc_InsR Catalytic Do  95.4    0.22 5.7E-06   28.5  13.0  148   26-213    10-167 (288)
315 KOG0610 consensus               95.4    0.19 4.8E-06   29.0   8.8  137   27-214    82-228 (459)
316 cd07857 STKc_MPK1 The catalyti  95.3   0.032 8.3E-07   34.0   4.8   29  184-213   124-153 (332)
317 KOG0593 consensus               95.3    0.03 7.6E-07   34.2   4.5   29  185-213   121-149 (396)
318 cd05095 PTKc_DDR2 Catalytic Do  95.3    0.25 6.4E-06   28.2  12.9   30  184-213   149-178 (296)
319 pfam10009 DUF2252 Uncharacteri  95.2   0.016 4.1E-07   36.0   2.8   73  179-251    36-117 (383)
320 cd05096 PTKc_DDR1 Catalytic Do  95.2    0.27 6.8E-06   28.0  11.0   30  184-213   157-186 (304)
321 cd06630 STKc_MEKK1 Serine/thre  95.1   0.063 1.6E-06   32.1   5.7  134   30-213     8-152 (268)
322 cd05111 PTK_HER3 Pseudokinase   95.1    0.27   7E-06   28.0  13.2  141   23-213     8-157 (279)
323 cd05092 PTKc_TrkA Catalytic Do  95.1    0.28 7.1E-06   27.9  13.1  151   28-213    11-170 (280)
324 KOG4250 consensus               95.0    0.21 5.5E-06   28.6   8.2   29  184-212   139-171 (732)
325 PTZ00024 cyclin-dependent prot  95.0   0.046 1.2E-06   33.0   4.8  133   30-213    16-159 (325)
326 cd05094 PTKc_TrkC Catalytic Do  95.0   0.017 4.2E-07   35.8   2.4  148   28-213    11-171 (291)
327 KOG0608 consensus               94.9   0.053 1.4E-06   32.6   4.7   30  183-213   747-777 (1034)
328 cd05066 PTKc_EphR_A Catalytic   94.8   0.095 2.4E-06   30.9   6.0  136   29-213    11-154 (267)
329 cd05108 PTKc_EGFR Catalytic Do  94.8   0.099 2.5E-06   30.8   6.0  136   28-213    13-157 (316)
330 cd05064 PTKc_EphR_A10 Catalyti  94.7    0.11 2.8E-06   30.5   6.0   30  184-213   126-155 (266)
331 cd05091 PTKc_Ror2 Catalytic Do  94.7    0.36 9.3E-06   27.2  10.8  153   23-213     6-172 (283)
332 cd05097 PTKc_DDR_like Catalyti  94.6    0.37 9.4E-06   27.1  12.6   30  184-213   148-177 (295)
333 COG2112 Predicted Ser/Thr prot  94.6     0.1 2.6E-06   30.7   5.7  134   19-213    19-154 (201)
334 KOG1035 consensus               94.6   0.056 1.4E-06   32.4   4.3   31  183-214   715-746 (1351)
335 cd05087 PTKc_Aatyk1_Aatyk3 Cat  94.6    0.38 9.7E-06   27.0  13.3   30  184-213   119-148 (269)
336 cd05115 PTKc_Zap-70 Catalytic   94.6    0.11 2.7E-06   30.6   5.7  116   48-213    25-143 (257)
337 cd05074 PTKc_Tyro3 Catalytic D  94.6   0.025 6.4E-07   34.7   2.5   30  184-213   132-161 (273)
338 cd05093 PTKc_TrkB Catalytic Do  94.5   0.026 6.7E-07   34.6   2.4  149   28-213    11-168 (288)
339 cd05099 PTKc_FGFR4 Catalytic D  94.5     0.4   1E-05   26.9  12.0   30  184-213   153-182 (314)
340 cd05058 PTKc_Met_Ron Catalytic  94.4    0.41 1.1E-05   26.8  12.4   30  184-213   117-146 (262)
341 cd05075 PTKc_Axl Catalytic Dom  94.2   0.035 8.9E-07   33.7   2.6   29  184-212   131-159 (272)
342 cd05103 PTKc_VEGFR2 Catalytic   94.2    0.45 1.1E-05   26.6  11.6   30  184-213   198-227 (343)
343 KOG0596 consensus               94.2    0.11 2.8E-06   30.5   5.1   29  184-213   479-507 (677)
344 cd05098 PTKc_FGFR1 Catalytic D  94.2   0.027 6.9E-07   34.4   2.0  153   27-213    23-188 (307)
345 cd05116 PTKc_Syk Catalytic Dom  94.2     0.1 2.6E-06   30.7   5.0  131   32-213     5-143 (257)
346 KOG0583 consensus               94.1   0.078   2E-06   31.5   4.1   32  184-216   139-172 (370)
347 cd05089 PTKc_Tie1 Catalytic Do  94.1   0.034 8.6E-07   33.8   2.2  150   29-213     9-167 (297)
348 cd05054 PTKc_VEGFR Catalytic D  94.0   0.033 8.4E-07   33.9   2.1   30  184-213   192-221 (337)
349 cd05035 PTKc_Axl_like Catalyti  93.7   0.045 1.1E-06   33.0   2.3   30  184-213   132-161 (273)
350 cd05033 PTKc_EphR Catalytic Do  93.7    0.58 1.5E-05   25.9  12.7  136   29-213    11-154 (266)
351 KOG0594 consensus               93.6    0.11 2.8E-06   30.5   4.2  146   26-213    15-168 (323)
352 KOG1164 consensus               93.6    0.59 1.5E-05   25.8  11.7  144   24-213    20-175 (322)
353 KOG0198 consensus               93.4    0.63 1.6E-05   25.6  11.8  138   29-213    24-166 (313)
354 cd05043 PTK_Ryk Pseudokinase D  93.4   0.062 1.6E-06   32.1   2.6   30  184-213   136-165 (280)
355 cd05101 PTKc_FGFR2 Catalytic D  93.1   0.048 1.2E-06   32.9   1.7  152   27-213    20-185 (304)
356 cd05100 PTKc_FGFR3 Catalytic D  93.1   0.065 1.7E-06   32.0   2.3   30  184-213   153-182 (334)
357 KOG0599 consensus               93.0    0.17 4.2E-06   29.4   4.4   31  184-214   142-172 (411)
358 KOG1152 consensus               93.0    0.14 3.6E-06   29.8   3.9   36  179-214   683-719 (772)
359 KOG1187 consensus               92.9     0.2 5.2E-06   28.8   4.7  161    7-217    65-229 (361)
360 COG3570 StrB Streptomycin 6-ki  92.9    0.75 1.9E-05   25.1  10.4  178   67-270    57-242 (274)
361 KOG0903 consensus               92.9    0.42 1.1E-05   26.8   6.3   95  188-285   699-842 (847)
362 KOG0192 consensus               92.6    0.42 1.1E-05   26.8   5.9   28  186-213   164-192 (362)
363 cd05102 PTKc_VEGFR3 Catalytic   92.4   0.096 2.4E-06   30.9   2.5   30  184-213   193-222 (338)
364 KOG0983 consensus               92.4     0.4   1E-05   26.9   5.6   30  183-213   210-240 (391)
365 KOG0659 consensus               92.4    0.72 1.8E-05   25.2   6.9   31  184-214   120-150 (318)
366 KOG0612 consensus               92.2    0.38 9.7E-06   27.0   5.3   28  184-212   194-222 (1317)
367 cd05078 PTK_Jak2_Jak3_rpt1 Pse  92.0     0.4   1E-05   26.9   5.2   30  184-213   119-156 (258)
368 KOG1989 consensus               91.9    0.99 2.5E-05   24.3  12.1  147   29-219    44-200 (738)
369 cd05036 PTKc_ALK_LTK Catalytic  91.9     0.1 2.6E-06   30.7   2.1   30  184-213   135-167 (277)
370 COG4320 Uncharacterized protei  91.8     0.5 1.3E-05   26.2   5.5   16  207-222    85-100 (410)
371 KOG0585 consensus               91.6    0.12 3.1E-06   30.3   2.2   30  184-213   229-258 (576)
372 TIGR02569 TIGR02569_actnb cons  91.4   0.075 1.9E-06   31.6   1.0  201   60-287    43-264 (279)
373 KOG0984 consensus               91.3    0.57 1.4E-05   25.9   5.4   80  184-273   168-250 (282)
374 cd05037 PTK_Jak_rpt1 Pseudokin  91.3    0.57 1.5E-05   25.9   5.4   30  184-213   120-156 (259)
375 KOG0670 consensus               91.1    0.53 1.3E-05   26.1   5.1   31  184-214   555-586 (752)
376 cd05167 PI4Kc_III_alpha Phosph  90.9     1.2 3.2E-05   23.7   7.4   74  187-264   163-250 (311)
377 KOG0660 consensus               90.7    0.13 3.3E-06   30.1   1.7   32  184-215   144-175 (359)
378 KOG0575 consensus               90.7    0.57 1.5E-05   25.9   4.9   30  184-214   137-167 (592)
379 cd05106 PTKc_CSF-1R Catalytic   90.4    0.21 5.4E-06   28.7   2.5   30  184-213   231-260 (374)
380 PRK09902 hypothetical protein;  90.2     1.4 3.7E-05   23.3   8.6  201    1-250     1-215 (216)
381 KOG0598 consensus               90.2    0.44 1.1E-05   26.6   4.0  136   26-213    29-173 (357)
382 cd05169 PIKKc_TOR TOR (Target   90.2     1.1 2.7E-05   24.1   6.0   26  186-212   183-210 (280)
383 cd00893 PI4Kc_III Phosphoinosi  90.1     1.5 3.7E-05   23.2   6.9   26  187-213   142-168 (289)
384 KOG1167 consensus               90.1    0.36 9.2E-06   27.2   3.5   42   59-107    78-119 (418)
385 cd05107 PTKc_PDGFR_beta Cataly  90.1    0.19 4.9E-06   28.9   2.1   30  184-213   258-287 (401)
386 cd05105 PTKc_PDGFR_alpha Catal  89.9     0.2 5.2E-06   28.8   2.1   30  184-213   256-285 (400)
387 KOG1151 consensus               89.2    0.57 1.4E-05   25.9   4.0   29  185-213   590-621 (775)
388 PRK09188 serine/threonine prot  89.2     1.7 4.4E-05   22.8   6.9   37   96-132    91-131 (365)
389 KOG0665 consensus               89.1    0.21 5.4E-06   28.7   1.7   31  184-214   137-167 (369)
390 cd05076 PTK_Tyk2_rpt1 Pseudoki  89.1    0.85 2.2E-05   24.8   4.8   41  166-213   125-172 (274)
391 cd05077 PTK_Jak1_rpt1 Pseudoki  88.9     1.1 2.8E-05   24.0   5.3   41  165-212   112-159 (262)
392 cd07925 LigA_like_1 The A subu  88.6       1 2.7E-05   24.2   4.9   66  215-280     1-76  (106)
393 cd07921 PCA_45_Doxase_A_like S  88.6       1 2.6E-05   24.2   4.9   66  215-280     1-76  (106)
394 KOG2345 consensus               88.3    0.58 1.5E-05   25.9   3.5   33  185-217   149-181 (302)
395 KOG0658 consensus               88.2    0.31   8E-06   27.6   2.0   29  184-212   144-173 (364)
396 PRK13377 protocatechuate 4,5-d  88.0     1.1 2.8E-05   24.0   4.8   67  214-280    11-87  (129)
397 KOG0663 consensus               87.9     1.6 4.2E-05   22.9   5.6   33  185-217   197-230 (419)
398 cd07924 PCA_45_Doxase_A The A   87.6     1.1 2.9E-05   23.9   4.6   67  214-280     8-84  (121)
399 KOG0600 consensus               87.4       1 2.6E-05   24.2   4.3   31  183-213   236-266 (560)
400 PRK09897 hypothetical protein;  87.3     2.2 5.7E-05   22.1   6.0   16  299-314   351-366 (535)
401 PRK13378 protocatechuate 4,5-d  87.2     1.3 3.2E-05   23.7   4.7   66  215-280    12-87  (117)
402 KOG0584 consensus               87.2    0.57 1.5E-05   25.9   2.9   42  165-212   150-193 (632)
403 KOG1236 consensus               87.1    0.49 1.3E-05   26.3   2.5   75  185-268   365-452 (565)
404 cd05104 PTKc_Kit Catalytic Dom  86.6    0.46 1.2E-05   26.5   2.2   30  184-213   233-262 (375)
405 KOG0193 consensus               86.4    0.92 2.3E-05   24.6   3.6   31  184-215   507-538 (678)
406 PTZ00267 NIMA-related protein   86.3    0.39   1E-05   26.9   1.7   30  184-213   188-217 (478)
407 KOG3653 consensus               86.3     1.2 3.1E-05   23.8   4.1   88  183-282   334-425 (534)
408 KOG0668 consensus               85.4    0.86 2.2E-05   24.7   3.1   30  183-213   150-181 (338)
409 KOG0671 consensus               85.4     2.5 6.4E-05   21.7   5.4   32  185-217   212-264 (415)
410 KOG1163 consensus               84.8       3 7.7E-05   21.2  11.0  143   21-213    14-162 (341)
411 KOG1006 consensus               84.5    0.76 1.9E-05   25.1   2.5   42  185-229   188-230 (361)
412 KOG1027 consensus               84.5    0.67 1.7E-05   25.5   2.1   30  184-213   625-659 (903)
413 PRK00029 hypothetical protein;  84.4     3.1   8E-05   21.1   6.7   28  182-213   241-268 (487)
414 KOG0666 consensus               84.3     1.5 3.9E-05   23.2   3.9  146   14-213    21-184 (438)
415 COG5072 ALK1 Serine/threonine   83.8    0.58 1.5E-05   25.9   1.6   67  186-256   343-418 (488)
416 KOG0197 consensus               83.5     1.5 3.9E-05   23.1   3.7   78  184-261   322-435 (468)
417 KOG0586 consensus               83.4     1.5 3.8E-05   23.2   3.6   30  184-213   174-203 (596)
418 cd05124 AFK Actin-Fragmin Kina  82.3     3.3 8.5E-05   20.9   5.0   45   38-89     15-62  (238)
419 KOG0661 consensus               82.3     2.4 6.1E-05   21.9   4.3   99  162-266   111-223 (538)
420 KOG0664 consensus               82.0     0.8   2E-05   25.0   1.7   31  184-214   175-205 (449)
421 KOG0694 consensus               82.0     3.1 7.8E-05   21.2   4.7   38  184-222   487-525 (694)
422 PRK13379 protocatechuate 4,5-d  81.6     3.6 9.2E-05   20.7   5.0   66  214-279    12-87  (119)
423 KOG0577 consensus               80.9     4.2 0.00011   20.2   5.6  155    7-215    10-176 (948)
424 pfam07387 Seadorna_VP7 Seadorn  77.6     3.8 9.8E-05   20.5   4.1   85  116-209   103-187 (308)
425 KOG0588 consensus               76.6     2.8 7.2E-05   21.4   3.2   29  184-213   131-160 (786)
426 pfam02696 UPF0061 Uncharacteri  76.4     5.5 0.00014   19.5   4.6  121   70-210   142-270 (487)
427 cd05175 PI3Kc_IA_alpha Phospho  76.3     4.9 0.00013   19.8   4.3   78  187-265   214-307 (366)
428 pfam07746 LigA Aromatic-ring-o  76.0     2.9 7.5E-05   21.3   3.1   56  226-281     2-62  (88)
429 KOG4236 consensus               75.7       6 0.00015   19.3   5.2   29  184-213   683-715 (888)
430 KOG0669 consensus               75.2       3 7.6E-05   21.2   3.0   28  185-212   144-171 (376)
431 KOG0590 consensus               74.9     1.9 4.7E-05   22.6   1.9   36  184-219   439-474 (601)
432 KOG4717 consensus               74.6     6.1 0.00015   19.2   4.4   28  185-212   138-166 (864)
433 KOG4530 consensus               73.7     6.8 0.00017   18.9   5.1   55   75-132    97-151 (199)
434 cd05165 PI3Kc_I Phosphoinositi  73.2       7 0.00018   18.9   5.0   74  187-265   215-307 (366)
435 cd00891 PI3Kc Phosphoinositide  73.0       7 0.00018   18.8   4.7   76  187-264   206-293 (352)
436 KOG0582 consensus               72.3     7.3 0.00019   18.7   5.8  135   30-212    34-173 (516)
437 pfam09192 Act-Frag_cataly Acti  70.7     3.5 8.8E-05   20.8   2.4   54   22-82     25-87  (274)
438 cd00896 PI3Kc_III Phosphoinosi  70.6     7.9  0.0002   18.5   4.6   77  187-265   205-288 (350)
439 cd05170 PIKKc_SMG1 Suppressor   70.4     2.7 6.9E-05   21.5   1.8   26  186-212   211-238 (307)
440 cd00142 PI3Kc_like Phosphoinos  70.0     2.7 6.8E-05   21.5   1.7   29  186-215   130-160 (219)
441 KOG0591 consensus               69.1     8.6 0.00022   18.3   6.1   29  184-212   147-175 (375)
442 KOG0611 consensus               68.4     7.4 0.00019   18.7   3.7   27  185-211   173-199 (668)
443 cd00892 PIKKc_ATR ATR (Ataxia   67.2     3.6 9.1E-05   20.7   1.9   27  186-213   141-169 (237)
444 cd05171 PIKKc_ATM Ataxia telan  67.2     3.1 7.9E-05   21.2   1.6   25  187-212   184-210 (279)
445 KOG4278 consensus               66.9     8.1 0.00021   18.4   3.7   30  184-213   384-413 (1157)
446 KOG0579 consensus               66.7     9.5 0.00024   18.0   5.0  153    3-214    24-179 (1187)
447 KOG2653 consensus               65.9       2 5.2E-05   22.3   0.4   21    7-27    214-234 (487)
448 cd05163 TRRAP TRansformation/t  65.7     3.3 8.3E-05   21.0   1.4   26  187-213   157-184 (253)
449 cd05172 PIKKc_DNA-PK DNA-depen  65.7     3.8 9.7E-05   20.6   1.8   27  186-213   138-166 (235)
450 cd05168 PI4Kc_III_beta Phospho  65.0      10 0.00026   17.8   4.3   79  187-267   144-232 (293)
451 COG0515 SPS1 Serine/threonine   64.1     3.5 8.9E-05   20.8   1.3   30  184-213   120-150 (384)
452 cd05164 PIKKc Phosphoinositide  63.8     3.9 9.9E-05   20.5   1.5   27  186-213   133-161 (222)
453 KOG0902 consensus               63.6      11 0.00028   17.6   6.8   75  188-266  1656-1743(1803)
454 cd07923 Gallate_dioxygenase_C   63.2      11 0.00028   17.6   4.5   58  222-279     5-67  (94)
455 KOG0200 consensus               62.0     5.6 0.00014   19.5   2.1   29  185-213   438-466 (609)
456 KOG0614 consensus               61.8     4.6 0.00012   20.0   1.6   30  183-212   538-567 (732)
457 pfam00454 PI3_PI4_kinase Phosp  61.6     4.6 0.00012   20.0   1.6   28  186-214   134-163 (233)
458 TIGR00654 PhzF_family phenazin  61.3      12  0.0003   17.3   4.8  115    5-136    32-163 (314)
459 KOG0905 consensus               61.3      12 0.00031   17.3   4.6   71  188-265  1200-1289(1639)
460 KOG1025 consensus               60.3      12 0.00032   17.2   4.9   32  183-214   816-847 (1177)
461 KOG0580 consensus               60.1     7.6 0.00019   18.6   2.5  145   15-216    20-175 (281)
462 cd05174 PI3Kc_IA_delta Phospho  59.7      13 0.00033   17.2   5.4   73  187-265   211-302 (361)
463 TIGR02090 LEU1_arch isopropylm  59.4     8.1 0.00021   18.4   2.5   35  164-198   171-208 (371)
464 KOG0607 consensus               59.1      13 0.00033   17.1   4.0   31  183-213   194-227 (463)
465 smart00146 PI3Kc Phosphoinosit  58.1       5 0.00013   19.8   1.3   27  187-214   104-131 (202)
466 KOG1033 consensus               58.0     2.1 5.3E-05   22.2  -0.7   31  184-214   375-405 (516)
467 KOG0597 consensus               58.0      14 0.00035   17.0   5.9   29  185-213   120-148 (808)
468 KOG4158 consensus               56.5      14 0.00037   16.8   4.5   30  183-213   359-393 (598)
469 KOG0696 consensus               56.1     9.4 0.00024   18.0   2.4   30  183-213   468-498 (683)
470 cd05177 PI3Kc_C2_gamma Phospho  55.6      15 0.00038   16.7   5.7   73  187-266   206-297 (354)
471 pfam08909 DUF1854 Domain of un  53.9      16  0.0004   16.5   4.9   42   10-51     46-90  (133)
472 pfam04767 Pox_F17 DNA-binding   53.6     9.8 0.00025   17.9   2.2   20   33-52      1-21  (98)
473 KOG4721 consensus               53.0     6.7 0.00017   19.0   1.2   28  186-213   233-260 (904)
474 KOG1290 consensus               52.9     9.1 0.00023   18.1   1.9   48   28-76     84-135 (590)
475 KOG0604 consensus               52.6      17 0.00042   16.4   4.0   54  163-223   166-222 (400)
476 cd05176 PI3Kc_C2_alpha Phospho  51.8      10 0.00026   17.8   2.0   72  187-260   205-290 (353)
477 KOG0589 consensus               51.4      17 0.00044   16.3   7.3  131   39-214    21-155 (426)
478 KOG1240 consensus               51.1      11 0.00028   17.5   2.1   18   40-57     41-58  (1431)
479 cd05166 PI3Kc_II Phosphoinosit  50.9     9.3 0.00024   18.0   1.7   77  187-265   205-295 (353)
480 cd05173 PI3Kc_IA_beta Phosphoi  50.5     9.6 0.00024   18.0   1.7   74  187-266   211-303 (362)
481 KOG4645 consensus               47.7      14 0.00035   17.0   2.1   31  183-213  1352-1382(1509)
482 KOG1094 consensus               47.4      11 0.00027   17.7   1.6   29  185-213   657-685 (807)
483 KOG0574 consensus               46.9      10 0.00026   17.8   1.4   13   76-88    154-166 (502)
484 cd00894 PI3Kc_IB_gamma Phospho  46.8      12 0.00029   17.4   1.7   77  187-265   215-306 (365)
485 cd00895 PI3Kc_C2_beta Phosphoi  46.7      12 0.00031   17.3   1.8   73  187-265   206-296 (354)
486 TIGR02144 LysX_arch Lysine bio  46.0      21 0.00053   15.8   3.2   37   71-108    95-134 (289)
487 pfam05445 Pox_ser-thr_kin Poxv  45.6      15 0.00039   16.7   2.1   20  181-200   293-314 (434)
488 COG0397 Uncharacterized conser  44.1      22 0.00057   15.6   9.8  121   70-211   142-275 (488)
489 KOG1095 consensus               43.1      13 0.00033   17.1   1.5   30  184-213   821-850 (1025)
490 TIGR01743 purR_Bsub pur operon  41.2      20 0.00051   15.9   2.1   88   12-137    45-142 (269)
491 KOG0194 consensus               41.1      25 0.00064   15.3   4.5   33  184-216   281-313 (474)
492 KOG4279 consensus               41.0      25 0.00064   15.3   3.4   77  185-261   695-806 (1226)
493 PRK13277 5-formaminoimidazole-  39.9      20 0.00051   15.9   2.0   42   39-87    105-146 (363)
494 KOG0662 consensus               39.7      26 0.00067   15.1   4.3   29  184-212   120-148 (292)
495 COG1693 Repressor of nif and g  39.6      14 0.00037   16.8   1.2   84    4-91     66-149 (325)
496 pfam11080 DUF2622 Protein of u  38.8      27 0.00069   15.0   4.9   71   45-129     6-76  (96)
497 TIGR02944 suf_reg_Xantho FeS a  37.9      13 0.00034   17.0   0.8   48    2-53     32-80  (130)
498 COG1554 ATH1 Trehalose and mal  37.7      28 0.00072   14.9   6.4   34  262-299   461-496 (772)
499 TIGR01990 bPGM beta-phosphoglu  37.2      29 0.00073   14.9   3.9   82   47-129    78-163 (190)
500 KOG0906 consensus               36.6      12 0.00029   17.4   0.4   67  188-255   698-770 (843)

No 1  
>PRK05231 homoserine kinase; Provisional
Probab=100.00  E-value=0  Score=700.54  Aligned_cols=315  Identities=42%  Similarity=0.787  Sum_probs=303.9

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             96577089999999998489986053100466812001799943995899982166998899999999999853267755
Q gi|254780795|r    1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCP   80 (316)
Q Consensus         1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP   80 (316)
                      |||||+||.+|++.+|++|+||++++++||++|++||||+|+|++|+||||||| +.+.++|||++++|+||+++|+|||
T Consensus         1 MaVyT~ls~~el~~~l~~Y~lG~l~~~~gI~~GieNTNY~v~T~~g~yILTifE-r~~~~~lpff~~Lm~~L~~~gipcP   79 (319)
T PRK05231          1 MAVYTPVSDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQGEYVLTLFE-RLTAEDLPFFLELMQHLAARGLPVP   79 (319)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEEEE-CCCHHHCCHHHHHHHHHHHCCCCCC
T ss_conf             971114899999999996699975021064666347428999459718999961-2883655299999999987899788


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             51001026778752245155786478870768998999999998643675306875433231124564576675200155
Q gi|254780795|r   81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD  160 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~  160 (316)
                      .||++++|+.+.+++|||++|++|++|+++..+++++|+++|++||+||+++++|+..|+|.+++.||...+.++.+.++
T Consensus        80 ~Pi~~~~G~~i~~l~gKpa~L~~fL~G~~~~~~~~~~c~~iG~~LA~lH~a~~~f~~~r~n~~~~~~~~~~~~~~~~~~~  159 (319)
T PRK05231         80 APLARRDGELLGTLAGKPAAIVTFLEGKHPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRSLAWWRELAPRLLPFLD  159 (319)
T ss_pred             CEEECCCCCCHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             36788998755785690489998258988799999999999999999665216798668888986899999999872178


Q ss_pred             HHHHH----HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCC
Q ss_conf             22788----99999998887652107774440223464225627960487316213568000198999986431168887
Q gi|254780795|r  161 EDLKK----EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTY  236 (316)
Q Consensus       161 ~~~~~----~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~  236 (316)
                      +....    ++......+++.+|++||+|+||||+|+|||||++++++|||||++||.|+++||||||+|+||++.+|.+
T Consensus       160 ~~~~~ll~~~i~~~~~~l~~~~~~~LP~GiIHaDLF~DNvlF~~~~lsGiIDFyfac~d~~~yDLAI~iN~WC~~~~g~~  239 (319)
T PRK05231        160 EDQAALLEDELAAQLAFLASAWPAALPRGVIHADLFRDNVLFEGDRLSGFIDFYFACNDKLLYDVAITLNDWCFELDGAL  239 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCEEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             76799999999999999853151028865320322433433508951689750230461689999999999982788983


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             87889999988764188998999999999999999999999998760885123112687999999999975211785179
Q gi|254780795|r  237 NPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFHKQISSISEYGF  316 (316)
Q Consensus       237 d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~~~~~~~~~~~~  316 (316)
                      |.+++++||+||+++||||++|+++||.|+|+||||||+|||+|++++|+++.|++|||+||.++|+||+++++..+||+
T Consensus       240 ~~~~~~all~gY~~~R~L~~~E~~~lp~llr~AAlRF~ltRL~d~~~~~~~~~v~~KdP~ef~~~L~~~~~~~~~~~~~~  319 (319)
T PRK05231        240 DVTKARALLAAYQSVRPLTAAERAALPVMLRGAALRFWLSRLYDFLLPRAGALVKPKDPLEFERKLRFRQAVVSALPYGL  319 (319)
T ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             89999999999985489999999999999999999999999999765999756615698999999999860498402489


No 2  
>TIGR00938 thrB_alt homoserine kinase; InterPro: IPR005280    Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. .
Probab=100.00  E-value=0  Score=676.42  Aligned_cols=304  Identities=43%  Similarity=0.806  Sum_probs=294.8

Q ss_pred             CCCCCCCCHHHHHHHHHHC-CCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9657708999999999848-998605310046681200179994399589998216699889999999999985326775
Q gi|254780795|r    1 MAVYTHPPQKEIQSFVQEY-AIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPC   79 (316)
Q Consensus         1 MaVyt~ls~~el~~il~~y-~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipv   79 (316)
                      |||||.||.+|++.+|+-| |+|++.+++||++||+||||+|+|++|+||||+||+|.+.++||||++|+.||+.+|+||
T Consensus         1 MaVYT~vsD~e~~~FL~GYPDlG~ll~lkGIA~Gv~NSNYl~tT~~GrYiLTlyE~~~~~EeLPfFL~L~~hLA~~g~p~   80 (312)
T TIGR00938         1 MAVYTSVSDEEMEAFLEGYPDLGELLSLKGIAEGVENSNYLLTTDKGRYILTLYEKRVKAEELPFFLELLTHLAERGLPV   80 (312)
T ss_pred             CCEEECCCHHHHHHHHCCCCCCCCHHHCCCCCCCCCEECCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             93440241899999853377555310001322362100315660587368876520168657710889999998638998


Q ss_pred             CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf             55100102677875224515578647887076899899999999864367530--68754332311245645766752--
Q gi|254780795|r   80 PIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT--KNFHLYRKNTLSPLNLKFLWAKC--  155 (316)
Q Consensus        80 P~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~--~~f~~~r~~~~~~~~~~~~~~~~--  155 (316)
                      |+|+++++|+.+.++.|||+||++|++|.++..|+..+|+.+|+.+|+||.+.  .+|+..+.|.+....|.....+.  
T Consensus        81 a~p~~~~~G~~~~~L~GkPAaLv~fL~G~s~~~P~~~~c~~~G~~lA~~hla~sl~~F~~~~~N~L~~~~W~~~~~~~G~  160 (312)
T TIGR00938        81 AKPVKSRDGRALSSLAGKPAALVEFLKGLSVAKPTAEHCREVGEVLAWMHLAGSLADFPEERKNDLRLEAWRILASKKGF  160 (312)
T ss_pred             CCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCH
T ss_conf             87500025430222067715666312688778880775367647887898775541563102678552231599873324


Q ss_pred             --HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEECCCCCCCCHHHCCHHHHHHHHHHCC
Q ss_conf             --00155227889999999888765210777444022346422562796-048731621356800019899998643116
Q gi|254780795|r  156 --FDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNK-IMGLIDFYFSCNDFLMYDLSICINAWCFDE  232 (316)
Q Consensus       156 --~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~-i~giIDF~~~~~~~~i~DLAi~i~~~c~~~  232 (316)
                        .+.++++..+.|.++++.+...+|++||+|+||+|||+|||||++|+ +.|+||||+||.+-++||||||+|+||++.
T Consensus       161 ~~~~~L~~~~~~~~~~~L~~l~~~~~~~LP~gvIHADlF~DNVL~~g~~k~~g~IDFYfAC~~~~~YD~Ait~n~Wc~~a  240 (312)
T TIGR00938       161 KAAPQLEEELSALLDKELDYLKKFWPRDLPRGVIHADLFPDNVLFDGDKKVAGVIDFYFACDDAYAYDLAITVNAWCFEA  240 (312)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEECCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             54332271038899999999974366557862364224777456507874455651131335025789999996898621


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
Q ss_conf             888787889999988764188998999999999999999999999998760885123112687999999999
Q gi|254780795|r  233 NNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRF  304 (316)
Q Consensus       233 ~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~  304 (316)
                      ++.+|....+|||+||+++||||++|+++||+|+|+||||||+|||.||+++|.|++|.+|||.+|.++|++
T Consensus       241 d~~l~~~~~kAll~GY~~~rpLs~eEkaafp~l~R~AA~RF~ltRl~D~~~t~Ag~Lv~~KDP~~F~~~L~~  312 (312)
T TIGR00938       241 DDKLDAAAAKALLDGYERVRPLSEEEKAAFPVLLRGAAMRFLLTRLLDWVFTPAGALVVPKDPREFERKLKV  312 (312)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             131479999998731211478888789899999999999999999985478778863345880899987259


No 3  
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=100.00  E-value=0  Score=632.80  Aligned_cols=296  Identities=39%  Similarity=0.742  Sum_probs=288.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             99999999848998605310046681200179994399589998216699889999999999985326775551001026
Q gi|254780795|r    9 QKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDG   88 (316)
Q Consensus         9 ~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G   88 (316)
                      ++||+.+|++|+||++++++||++|++||||+|+|++|+|||||||+ .+.+++||++++|+||+++|+|||.||++++|
T Consensus         1 ~~el~~~l~~Y~lG~l~~~~gI~~GieNtNy~l~T~~g~yILtifE~-~~~~dlpff~~Lm~~L~~~g~p~P~pi~~~~G   79 (296)
T cd05153           1 QEELASFLADYDLGELLSFEGISAGIENTNYFVTTDSGRYVLTLFEK-VSAEELPFFLALLDHLAERGLPVPRPIADRDG   79 (296)
T ss_pred             CHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf             96899999857998750202725564564589995598389997268-99466539999999998679869978448999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             77875224515578647887076899899999999864367530687543323112456457667520015522788999
Q gi|254780795|r   89 KLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEID  168 (316)
Q Consensus        89 ~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (316)
                      +.+..++|||++|++|++|+++..+++.+|+++|++||+||+++++|+..++|.++..||........+.+.++....+.
T Consensus        80 ~~~~~l~gKpa~l~~fL~G~~~~~~~~~~c~~iG~~LAklH~~~~~f~~~r~n~~~~~w~~~~~~~~~~~~~~~~~~~l~  159 (296)
T cd05153          80 EYLSELAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLA  159 (296)
T ss_pred             CCHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             87335269459999856888989999999999999999987510679876888876668999998753006988999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99998887652107774440223464225627960487316213568000198999986431168887878899999887
Q gi|254780795|r  169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGY  248 (316)
Q Consensus       169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY  248 (316)
                      +++..++..++++||+|+||||+|+|||||++++|+|||||++||+|+++||||||+|+||++.+|.+|++++++||+||
T Consensus       160 ~el~~l~~~~~~~LP~GiIHgDLF~DNVlF~~d~vsGiIDFy~ac~d~~~yDLAI~iN~WC~~~~~~~~~~~~~all~gY  239 (296)
T cd05153         160 DELARQDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFACTDAFLYDLAITLNDWCFDEDGALDPERAQALLAGY  239 (296)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99999986180008865532433423344506874023134541431899999999999991567885899999999999


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHH
Q ss_conf             641889989999999999999999999999987608851231126879999999999
Q gi|254780795|r  249 NKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFH  305 (316)
Q Consensus       249 ~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~  305 (316)
                      +++||||++|+++||.++|+||||||+|||+|++++++++++++|||+||.++|++|
T Consensus       240 ~~~R~L~~~E~~~l~~~~r~AAlRF~ltRl~d~~~~~~~~~~~~KdP~e~~~~l~~~  296 (296)
T cd05153         240 QAVRPLTEAERAALPIMLRGAALRFWLSRLYDFHFPPAGELVTIKDPLEYRRRLRFR  296 (296)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             863999999999999999999999999999996659996316665989999998459


No 4  
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=100.00  E-value=0  Score=439.61  Aligned_cols=313  Identities=33%  Similarity=0.516  Sum_probs=285.8

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             96577089999999998489986053100466812001799943995899982166998899999999999853267755
Q gi|254780795|r    1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCP   80 (316)
Q Consensus         1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP   80 (316)
                      |+|||.++..++...+..|++|-..++.++.+ .+|+||+|.|++|+||||+|+...+..++++|+.+|+||+++|+|||
T Consensus         5 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~l~s-~eN~~f~~~~~~g~~iLki~~~~~~~~~i~~el~~l~~La~~~i~v~   83 (331)
T COG2334           5 MAVFTPLTSDEAAAALEAYHYGLDGSLRGLNS-EENSNFRVQTEDGRYILKIYRPGWTRAEIPFELALLQHLAERGIPVP   83 (331)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             22456758099999998457487544232333-46751788717997699982688887777999999999997599887


Q ss_pred             CCCCCCHHHHHHHHCC--CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHH
Q ss_conf             5100102677875224--515578647887076-899899999999864367530687543323112456457---6675
Q gi|254780795|r   81 IPIPRNDGKLYGFLCK--KPANIFSFIKGSPLN-HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF---LWAK  154 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~--k~~~L~~~i~G~~~~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~---~~~~  154 (316)
                      .|++++||+.+..+.+  ++++|++|++|++.. .+|.++|+.+|++||+||.++++|+..+++......|..   ....
T Consensus        84 ~Pl~~~dG~~l~~~~~~~r~a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~  163 (331)
T COG2334          84 APLPSLDGELLEALSGGPRPAALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALL  163 (331)
T ss_pred             CCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             77616785611101478657999886699676778878999999999999999747797658873343220111115566


Q ss_pred             HHHC-CCHHHHHHHHHHHHHHHHHHHHCCCCC---EEECCCCCCCEEECCCC-CEEEECCCCCCCCHHHCCHHHHHHHHH
Q ss_conf             2001-552278899999998887652107774---44022346422562796-048731621356800019899998643
Q gi|254780795|r  155 CFDK-VDEDLKKEIDHEFCFLKESWPKNLPTG---IIHADLFPDNVLFYNNK-IMGLIDFYFSCNDFLMYDLSICINAWC  229 (316)
Q Consensus       155 ~~~~-~~~~~~~~l~~~l~~~~~~~~~~Lp~g---~IHgDl~~~NiL~~~~~-i~giIDF~~~~~~~~i~DLAi~i~~~c  229 (316)
                      .... .+......+...++.+.+.+++.+|.+   +||||+|++||+|+++. ++|+|||||||++|++|||||++|+| 
T Consensus       164 ~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~~~~i~DlAi~l~~~-  242 (331)
T COG2334         164 RLDLVEPEDLRAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGYGWFIYDLAIALNAW-  242 (331)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHH-
T ss_conf             5314787767799999999999745332676555457667760347776898700078761124435999999999876-


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             11688878788999998876418899899999999999999999999999876088512311268799999999997521
Q gi|254780795|r  230 FDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFHKQIS  309 (316)
Q Consensus       230 ~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~~~~~  309 (316)
                       ..+...+..+..+|++||+++|||+++|+++||.++|++|+|||.+|++++..+|.+.....++|..+.+.++++++..
T Consensus       243 -~~d~~~~~~~~~a~l~GY~~v~pl~~~El~~Lp~l~r~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~  321 (331)
T COG2334         243 -NGDEADPRAAIAAFLEGYEEVRPLTAAELELLPDLRRLRALRLWAWRLIRWLLPPAGRLWLKLDPAWLRRLLEFLEQIK  321 (331)
T ss_pred             -HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf             -2578764899999999865338899999987799999999999998877603687665102057205999999997400


Q ss_pred             HHHHCCC
Q ss_conf             1785179
Q gi|254780795|r  310 SISEYGF  316 (316)
Q Consensus       310 ~~~~~~~  316 (316)
                      +..++.+
T Consensus       322 ~~~~~~~  328 (331)
T COG2334         322 ALDEPPL  328 (331)
T ss_pred             CCCCCCC
T ss_conf             3354444


No 5  
>PRK06149 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=321.20  Aligned_cols=302  Identities=19%  Similarity=0.282  Sum_probs=240.5

Q ss_pred             CCCHHHHHHHHH-HCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf             089999999998-4899860531004668120017999439958999821669988999999999998532--6775551
Q gi|254780795|r    6 HPPQKEIQSFVQ-EYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN--KLPCPIP   82 (316)
Q Consensus         6 ~ls~~el~~il~-~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~--gipvP~p   82 (316)
                      .+|.+|.+.+++ +|||.  -+++++ .|-...||+|++++|+|||||.+...+...++++..+|.||+++  ++|||++
T Consensus        16 ~~S~~eA~~ll~~~yGi~--g~l~~L-~sErD~NF~v~~~~g~yVLKI~n~~e~~~~ld~Q~~aL~HLa~~~~~l~vP~v   92 (972)
T PRK06149         16 DVSEAQAQEILAQHYGLS--GTLASL-GSQQDRNFRVDTDRGRFVLKICHGAYTTVELEAQHAALRHLAEAEPALRVPVV   92 (972)
T ss_pred             CCCHHHHHHHHHHHCCCE--EEEEEC-CCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             999999999999867987--998517-86015125798189878999627889878999999999999836999989977


Q ss_pred             CCCCHHHHHHHHC--C--CCEEEEECCCCCCC---CCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHH
Q ss_conf             0010267787522--4--51557864788707---689989999999986436753068754---332311245645766
Q gi|254780795|r   83 IPRNDGKLYGFLC--K--KPANIFSFIKGSPL---NHISDIHCEEIGSMLASMHQKTKNFHL---YRKNTLSPLNLKFLW  152 (316)
Q Consensus        83 i~~~~G~~~~~~~--~--k~~~L~~~i~G~~~---~~~~~~~~~~lG~~La~lH~~~~~f~~---~r~~~~~~~~~~~~~  152 (316)
                      +++++|+.+..++  |  ..++|++|+||+..   ...++...+++|+++|++.+++++|..   .|...|++.......
T Consensus        93 i~t~~G~~~~~~~~~g~~~~vRLlsyl~G~~l~~~~~~s~~l~~~LG~~lg~l~~AL~~F~HP~~~R~~~WDl~~a~~~~  172 (972)
T PRK06149         93 IPANDGEELLTLDVRGQGLHVRLLEYLEGQPLTRLGHLAPASVAGLGALCARVDRALADFDHPGLDRTLQWDLRHAGAVI  172 (972)
T ss_pred             EECCCCCEEEEEECCCCEEEEEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             53699985799964897799999980098743448889989999999999999998657988776787560701118999


Q ss_pred             HHHHHCC-CHHHHHHHHHHHHHHHHH-H--HHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHHHCCHHH
Q ss_conf             7520015-522788999999988876-5--21077744402234642256279-----6048731621356800019899
Q gi|254780795|r  153 AKCFDKV-DEDLKKEIDHEFCFLKES-W--PKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFLMYDLSI  223 (316)
Q Consensus       153 ~~~~~~~-~~~~~~~l~~~l~~~~~~-~--~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~i~DLAi  223 (316)
                      ..+...+ +...++.+...+..+.+. .  .+.||+++||||++.+|||++++     +++|||||+|+|+.|++.||||
T Consensus       173 ~~ll~~I~D~~~R~~i~~~l~~f~~~v~P~l~~Lr~qvIHND~ND~NIlV~~d~~~~~~vsGIIDFGD~~~~~~i~dlAi  252 (972)
T PRK06149        173 DHLLPHVADPAQRDRIAEATRDAVRRLQPLADALPLQAVHLDITDDNVVWSRDAGGQWQPDGVIDFGDLTRTWRVADLAV  252 (972)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHHHHHCCHHHHHHH
T ss_conf             99988639999999999999999997415455386232547886455785068888730455765355451124569999


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHCCCCCHHHHHH
Q ss_conf             99864311688878788999998876418899899999999999999999999999---876088512311268799999
Q gi|254780795|r  224 CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLY---DSQNMPCNALTITKDPMEYIL  300 (316)
Q Consensus       224 ~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~---d~~~~~~~~~~~~kdp~~~~~  300 (316)
                      ||.|...+.++  ++..+.++++||++++||+++|+++|+.|+   ++|.-+|..-   .....|+|.|+++....+|..
T Consensus       253 a~ay~l~~~~~--~p~~~~~~v~gyh~~~pL~~~Ei~~l~~li---~~Rl~vsv~~s~~~~~~~Pdn~Yl~is~~~aw~~  327 (972)
T PRK06149        253 TCASLLHHAGG--DPFSILPAVRAYHAINPLSDAELKALWPLV---VARAAVLVLSSEQQASVDPGNAYVRDNLDHEWEI  327 (972)
T ss_pred             HHHHHHHCCCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf             99999835799--999999999998516999999999999999---9999999999999986189996523124448899


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999997521178517
Q gi|254780795|r  301 KTRFHKQISSISEYG  315 (316)
Q Consensus       301 ~~~~~~~~~~~~~~~  315 (316)
                      +.+++.....+..+.
T Consensus       328 l~~~~~~~~~l~~a~  342 (972)
T PRK06149        328 FDTATSVPFDLMEAA  342 (972)
T ss_pred             HHHHHHCCHHHHHHH
T ss_conf             999874799999999


No 6  
>PRK06148 hypothetical protein; Provisional
Probab=100.00  E-value=0  Score=316.94  Aligned_cols=300  Identities=19%  Similarity=0.264  Sum_probs=240.5

Q ss_pred             CCCHHHHHHHHH-HCCC-CCEEEEEECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCCCC
Q ss_conf             089999999998-4899-8605310046681200179994399-58999821669988999999999998532--67755
Q gi|254780795|r    6 HPPQKEIQSFVQ-EYAI-GQLNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKDLPVFIELLHYISRN--KLPCP   80 (316)
Q Consensus         6 ~ls~~el~~il~-~y~l-g~~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~--gipvP   80 (316)
                      .+|.+|.+++|+ +||| |++   +++ .|-...||+|++++| +|||||++...+...++++..+|+||+++  ++|||
T Consensus        10 ~~s~~ea~~ll~~~yGi~g~l---~~L-~sE~D~NF~v~~~~g~~yVLKI~n~~e~~~~le~Q~~aL~hL~~~~~~l~vP   85 (1015)
T PRK06148         10 EFTTKDAEALLAQHFGVSASL---TPL-DGERDLNFRLKTGNGAGYILKIVNASEPRVESEFQTALLDHLAATAPALPVP   85 (1015)
T ss_pred             CCCHHHHHHHHHHHCCCEEEE---EEC-CCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             999999999999867986999---767-8635521589718998799996588798779999999999998459999888


Q ss_pred             CCCCCCHHHHHHHHC---CC--CEEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHH
Q ss_conf             510010267787522---45--15578647887076--89989999999986436753068754---3323112456457
Q gi|254780795|r   81 IPIPRNDGKLYGFLC---KK--PANIFSFIKGSPLN--HISDIHCEEIGSMLASMHQKTKNFHL---YRKNTLSPLNLKF  150 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~---~k--~~~L~~~i~G~~~~--~~~~~~~~~lG~~La~lH~~~~~f~~---~r~~~~~~~~~~~  150 (316)
                      ++++|.+|+.+..+.   |+  .++|++|+||+...  ..++...+++|+++|++.+++++|..   .|...|++.....
T Consensus        86 ~vi~t~~G~~~~~~~~~~g~~~~vRLlt~l~G~~l~~~~~s~~l~~~LG~~lg~l~~AL~~F~HP~~~R~~~WDl~~a~~  165 (1015)
T PRK06148         86 HLKPSLSGASLASAEDPDGKPHALRLVSWLPGTPLAEAKRTKALLKNLGRALGELDRALQGFMHPGALRDFDWDLRHAGR  165 (1015)
T ss_pred             EEEECCCCCEEEEEECCCCCEEEEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf             25525999856899868998899998982288771348999899999999999999986489886667877738566499


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHH-H--HHCCCCCEEECCCCCCCEEECC---CCCEEEECCCCCCCCHHHCCHHHH
Q ss_conf             667520015522788999999988876-5--2107774440223464225627---960487316213568000198999
Q gi|254780795|r  151 LWAKCFDKVDEDLKKEIDHEFCFLKES-W--PKNLPTGIIHADLFPDNVLFYN---NKIMGLIDFYFSCNDFLMYDLSIC  224 (316)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~-~--~~~Lp~g~IHgDl~~~NiL~~~---~~i~giIDF~~~~~~~~i~DLAi~  224 (316)
                      ....+....+++.++.+.+.+..+++. .  .+.||+++||||++.+||++++   ++|+|||||+|+|++|++.|||||
T Consensus       166 ~~~~L~~i~d~~~r~ii~~~~~~f~~~v~P~l~~L~~qvIHnD~Nd~NIlV~~~~~~~v~GiIDFGD~~~~~~i~dlAi~  245 (1015)
T PRK06148        166 ARDRLHCIDDPERRALIERFLARFERTVAPRLPALRAQVIHNDANDWNVLVDADDGERISGLIDFGDAVHTPRIAEVAIA  245 (1015)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             99998754999999999999999999740545538612177888755477658888760489974200123234499999


Q ss_pred             HHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHCCCCCHHHHHH
Q ss_conf             9864311688878788-999998876418899899999999999999999999999---876088512311268799999
Q gi|254780795|r  225 INAWCFDENNTYNPSR-GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLY---DSQNMPCNALTITKDPMEYIL  300 (316)
Q Consensus       225 i~~~c~~~~~~~d~~~-~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~---d~~~~~~~~~~~~kdp~~~~~  300 (316)
                      +.|..++..   |+.. ..++++||++++||+++|+++|+.|+   ++|.-+|..-   .....|+|.|+++....+|..
T Consensus       246 ~ay~~l~~~---dp~~~~~~~v~gyh~~~pL~~~Ei~~l~~li---~~Rl~vsv~~s~~~~~~~Pdn~Y~~is~~~aw~l  319 (1015)
T PRK06148        246 AAYAILDMP---DPIGAAAALAAGYHAKYPLQAQELDLLFDLI---AMRLVVSVTNSASRREQTPDNPYLAISEAPAWRL  319 (1015)
T ss_pred             HHHHHHCCC---CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf             999972589---8789999999998745899999999999999---9999999999999987389996235303438999


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999997521178517
Q gi|254780795|r  301 KTRFHKQISSISEYG  315 (316)
Q Consensus       301 ~~~~~~~~~~~~~~~  315 (316)
                      +-++......+..+.
T Consensus       320 L~~~~~i~~~~~~a~  334 (1015)
T PRK06148        320 LERLDALNPRLATAI  334 (1015)
T ss_pred             HHHHHHCCHHHHHHH
T ss_conf             999873699999999


No 7  
>TIGR02906 spore_CotS spore coat protein, CotS family; InterPro: IPR014255   Members of this entry include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologues that are more closely related to these two than to the spore coat proteins YutH (IPR014254 from INTERPRO) and YsxE (IPR014253 from INTERPRO). The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers..
Probab=100.00  E-value=1.8e-31  Score=223.34  Aligned_cols=256  Identities=19%  Similarity=0.236  Sum_probs=200.2

Q ss_pred             EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-CCCH
Q ss_conf             179994399589998216699889999999999985326-77555100102677875224515578647887076-8998
Q gi|254780795|r   38 NFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLN-HISD  115 (316)
Q Consensus        38 ny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~-~~~~  115 (316)
                      .|.|.|++|+++||...  .+.+.+-|-+.+++||.++| .+||..++|++|+.+..++|..++|++||+|+.++ ..|+
T Consensus        12 v~~~~T~~g~~cLK~i~--~~~~~~lFi~~A~ehL~~~gF~~i~~i~~tk~g~~y~~~n~~ly~l~ew~eGrec~P~~n~   89 (321)
T TIGR02906        12 VYKVETDSGEKCLKKIN--YSPERLLFILGAQEHLKKNGFNNIPKILKTKDGELYVKLNGDLYVLTEWIEGRECDPFNNP   89 (321)
T ss_pred             EEEEECCCCCEEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCH
T ss_conf             78898489752455511--7864002579999999981776564233588887446547818998433026469888898


Q ss_pred             HHHHHHHHHHHHHHHHCCCC-CCCCC--CCCC--HHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH--
Q ss_conf             99999999864367530687-54332--3112--45645766752001----------------55227889999999--
Q gi|254780795|r  116 IHCEEIGSMLASMHQKTKNF-HLYRK--NTLS--PLNLKFLWAKCFDK----------------VDEDLKKEIDHEFC--  172 (316)
Q Consensus       116 ~~~~~lG~~La~lH~~~~~f-~~~r~--~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~l~~~l~--  172 (316)
                      .++..+.+.||.||.++.|| .+++.  ....  +..|...+.+..+.                .+......++..++  
T Consensus        90 ~dl~~~~~~La~~H~aS~Gy~~~p~~~~~~~~~~Lgkw~~~f~~~~~~l~~~k~~~~~~~~~~~Fd~~yl~~~D~~l~~~  169 (321)
T TIGR02906        90 IDLKKAAKALALLHEASKGYRVPPDGSKIRSKNELGKWPKQFEKRLEELEKFKKIAKEKKYKDEFDKLYLKEVDYFLERA  169 (321)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999998556506675107776641034430201679999999999999998621225700368998878999999


Q ss_pred             -----HHHHHHHHCC------CCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf             -----8887652107------774440223464225627-9604873162135680001989999864311688878788
Q gi|254780795|r  173 -----FLKESWPKNL------PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR  240 (316)
Q Consensus       173 -----~~~~~~~~~L------p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~  240 (316)
                           .+....+.+|      .+|+||.|+-.+|+|+.+ +++. |||||.|..|.++.||+-.|+-..+.+.+.||.+.
T Consensus       170 ~~~~~~l~~S~Y~~l~~~~~~~~~fCH~Dy~~~Nil~~~~~~~~-~IDfD~~~~Dl~~~Dl~~~i~k~~~~k~~~WD~~~  248 (321)
T TIGR02906       170 KKALELLNKSKYYDLCKEEKKKRGFCHQDYAYHNILLKDNNEVY-VIDFDYCTIDLRVRDLRKLIIKLMFKKNGKWDLEK  248 (321)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHCCCCCEECHHHHCCCCCCCCCEE-EEECCEEEECCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99999863277226888753235630320144251223798756-87516056655365599997667753022146789


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHCCCCCHHHHHHHHH
Q ss_conf             999998876418899899999999999999999999999876088-512311268799999999
Q gi|254780795|r  241 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMP-CNALTITKDPMEYILKTR  303 (316)
Q Consensus       241 ~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~-~~~~~~~kdp~~~~~~~~  303 (316)
                      +..+|++|+++.||+.+|.+.|..+|.. =-+||-... +++..+ ...     .+..|..+|.
T Consensus       249 ~~~iI~~Y~~~~pL~~~e~e~~~i~l~F-P~~Fw~~~~-~yY~~~~k~w-----~~e~f~~~l~  305 (321)
T TIGR02906       249 AKEIIEAYSSINPLSKEEYEVLYIDLAF-PHKFWKIGK-QYYYKRDKSW-----SEEKFLKKLE  305 (321)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHC-HHHHHHHHH-HHHHCCCCCC-----CHHHHHHHHH
T ss_conf             9999861100368887569999999846-799999999-8640256665-----4448999999


No 8  
>pfam01636 APH Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.
Probab=99.97  E-value=1.3e-30  Score=217.83  Aligned_cols=216  Identities=20%  Similarity=0.268  Sum_probs=155.9

Q ss_pred             EEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             10046681200179994399589998216699889999999999985326775551001026778752245155786478
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK  106 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~  106 (316)
                      ++++++|.+|+||++.+++++||||++++......+..|..++++|++.|+|||+|+....+..   ..+.++.+++|++
T Consensus         2 ~~~~~~G~~n~~~~~~~~~~~~vlr~~~~~~~~~~~~~e~~~l~~L~~~~~~vP~~~~~~~~~~---~~~~~~~~~~~i~   78 (239)
T pfam01636         2 LRPLSGGASNRTYLVGTGDGRYVLKLAPPAEAAEELRRELALLRHLAAAGIPVPRVLAGGTDGG---GLGLPFLLMEGLP   78 (239)
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC---CCCCCEEEEEEEC
T ss_conf             6766897553549999499318999899886755578999999998733999982533366754---4687679998646


Q ss_pred             CCCCCCCC-------HHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH
Q ss_conf             87076899-------8999999998643675306875-43323112456457667520----015522788999999988
Q gi|254780795|r  107 GSPLNHIS-------DIHCEEIGSMLASMHQKTKNFH-LYRKNTLSPLNLKFLWAKCF----DKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus       107 G~~~~~~~-------~~~~~~lG~~La~lH~~~~~f~-~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~  174 (316)
                      |+......       ...+.++|+.|++||....... ...........+........    ...............+.+
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (239)
T pfam01636        79 GEDLTRDDLLDLAERGALLEALARLLARLHSVPPEALPLARRLARRLKLLRQLAAALARLVAAELLDSLAELWERLLAAL  158 (239)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             71346776313589999999999999999659975578432231327899999999987522223443899999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8765210777444022346422562-796048731621356800019899998643116888787889999988764
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNK  250 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~  250 (316)
                      ....+ ..|.++||||++++|+|++ +++++||||||+||+++++||||.+++.||..    +..+....++.+|..
T Consensus       159 ~~~~~-~~~~~l~HgD~~~~Nil~~~~~~v~giID~e~a~~g~~~~Dla~~l~~~~~~----~~~~~~~~~~~~~~~  230 (239)
T pfam01636       159 LALLP-ALPPVLVHGDLHPGNLLVDPGGRVSGVIDFEDAGLGDPAYDLASLLRSLGEE----LGAELLAAYLAAYGA  230 (239)
T ss_pred             HHCCC-CCCCEEEECCCCCCEEEECCCCCEEEEEECHHCCCCCHHHHHHHHHHHCCCC----CCHHHHHHHHHHHCC
T ss_conf             85398-6895588478998818985999589998103237589999999999876668----999999999997689


No 9  
>PRK11768 serine/threonine protein kinase; Provisional
Probab=99.97  E-value=1.6e-28  Score=204.17  Aligned_cols=296  Identities=15%  Similarity=0.220  Sum_probs=208.0

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCC-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             57708999999999848998605310046681200179994399-589998216-6998899999999999853267755
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKG-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCP   80 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP   80 (316)
                      -|..||++-+-.-+..-|+-.--.+-++ .-+||+.|.|..+++ +||.|.|+. |-+.++|..|+..+..|++.+|||.
T Consensus         7 ~f~~LtPd~ilDAves~G~~~d~rllaL-NSYENRVYQvg~Ed~~~~VaKFYRP~RWS~~QIlEEH~F~~eL~~~EIPVV   85 (326)
T PRK11768          7 PFQTLTPDLILDALESVGLRPDGRLLAL-NSYENRVYQFGDEDGRRVVAKFYRPERWSDAQILEEHQFALELAEAEIPVV   85 (326)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCEEEC-CCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8343897999999998387777776422-562422168642489847998518887888999999999999997699813


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHH--H
Q ss_conf             51001026778752245155786478870768998999999998643675306875433231124564576-67520--0
Q gi|254780795|r   81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFL-WAKCF--D  157 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~-~~~~~--~  157 (316)
                      .|+.. +|+++++.+|-.++|++...|+.++..+.++++.+|+.||++|.+++.-+...++.+++...... ...+.  .
T Consensus        86 aPl~~-~G~TL~~~~Gf~fAlfpr~gGrapEldn~d~L~~lGr~lgRiH~vG~~~~f~hRp~l~~~~~~~~~~~~L~~~~  164 (326)
T PRK11768         86 APLAF-NGETLHEHQGFRFALFPRRGGRAPELDNLDQLEWVGRFLGRIHQVGATRPFEHRPTLDLQEYGHEPRQWLLDSD  164 (326)
T ss_pred             CCEEE-CCCCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             87523-87201000898999851436879898987999999999999998601478854766788888888999998669


Q ss_pred             CCCHHHH----HHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCC
Q ss_conf             1552278----8999999988876521-0777444022346422562796048731621356800019899998643116
Q gi|254780795|r  158 KVDEDLK----KEIDHEFCFLKESWPK-NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDE  232 (316)
Q Consensus       158 ~~~~~~~----~~l~~~l~~~~~~~~~-~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~  232 (316)
                      .+..++.    +.....+..+...+.. +.+.--+|||+|++||||.++... ++|||||..||.+.||      |.+-.
T Consensus       165 ~iP~~l~~~y~~~~~~ll~~v~~~~~~~~~~~iRlHGDCH~GNILwrdd~p~-fVDfDD~r~GPAIQDL------WMlLs  237 (326)
T PRK11768        165 LIPSSLRPAYLSAADQLLAAVEAHWARAPFRLLRLHGDCHPGNILWTDDGPH-FVDLDDARMGPAVQDL------WMLLS  237 (326)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCE-EEECCCCCCCCHHHHH------HHHCC
T ss_conf             8898999999999999999999985218852244106767554113289864-8744003456178888------87537


Q ss_pred             CCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHCCCHHHCCCCCHHHH-HHHHHH
Q ss_conf             888787-88999998876418899899999999999999999-----9999998-760885123112687999-999999
Q gi|254780795|r  233 NNTYNP-SRGFSILNGYNKVRKISENELQSLPTLLRGAALRF-----FLTRLYD-SQNMPCNALTITKDPMEY-ILKTRF  304 (316)
Q Consensus       233 ~~~~d~-~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf-----~lsrl~d-~~~~~~~~~~~~kdp~~~-~~~~~~  304 (316)
                      ...-+. .+...+++||+..++....|+..+..|-   +||.     ||.|-|+ .-+ |.+ .---..+.-| ..++.+
T Consensus       238 G~r~~~~~QL~~lleGYeeF~~Fd~reL~LIEpLR---tlRmihy~AWlarRW~DPAF-p~a-FPWF~t~~YW~~~il~L  312 (326)
T PRK11768        238 GDRAEQLMQLETLLEGYEEFCEFDTRELALIEPLR---ALRLIHYSAWLARRWDDPAF-PRA-FPWFGTEDYWEQQILEL  312 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCC-CCC-CCCCCCCHHHHHHHHHH
T ss_conf             98279999999999999988369999998889999---99999999999875358653-222-88778614799999999


Q ss_pred             HHHHHHHH
Q ss_conf             97521178
Q gi|254780795|r  305 HKQISSIS  312 (316)
Q Consensus       305 ~~~~~~~~  312 (316)
                      +++....+
T Consensus       313 rEQ~~~l~  320 (326)
T PRK11768        313 REQLAALQ  320 (326)
T ss_pred             HHHHHHHC
T ss_conf             99999743


No 10 
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=99.94  E-value=2.4e-26  Score=190.14  Aligned_cols=200  Identities=17%  Similarity=0.281  Sum_probs=137.1

Q ss_pred             EEEECCCCCEEEEEEEEECCC-CEEEEEECC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             310046681200179994399-589998216---6998899999999999853267755510010267787522451557
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSKG-TFILTIYEK---RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~---~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +++.+++|..|+||+|+++++ +||||+.-.   .....++..|..+|+.|++.|+|||+|+..-.+.   ..-|.+|.|
T Consensus         2 ~~~~l~gG~sn~t~~v~~~~~~~~VlR~~p~~~~~~~~~~~~rE~~vl~~L~~~~vPvP~v~~~~~~~---~~~G~pf~v   78 (223)
T cd05154           2 EVRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDP---SVLGTPFYV   78 (223)
T ss_pred             EEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC---CCCCCCEEE
T ss_conf             25876997655569999799968999718988888663037999999998656699976189982688---747875699


Q ss_pred             EECCCCCCCCC------CCHH----HHHHHHHHHHHHHHHC-CCCCC--CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             86478870768------9989----9999999864367530-68754--3323112456457667520015522788999
Q gi|254780795|r  102 FSFIKGSPLNH------ISDI----HCEEIGSMLASMHQKT-KNFHL--YRKNTLSPLNLKFLWAKCFDKVDEDLKKEID  168 (316)
Q Consensus       102 ~~~i~G~~~~~------~~~~----~~~~lG~~La~lH~~~-~~f~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (316)
                      |+|++|+....      .+++    .+.++|+.||+||... ..+..  .....-........+.+............+.
T Consensus        79 m~~i~G~~~~~~~~~~~~~~~~r~~l~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (223)
T cd05154          79 MERVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAME  158 (223)
T ss_pred             EEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             97326552487666667999999999999999999984689767685325789857999999999999874267873799


Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHH
Q ss_conf             99998887652107774440223464225627--9604873162135680001989999864
Q gi|254780795|r  169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAW  228 (316)
Q Consensus       169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~  228 (316)
                      ..+.++.++.|..-|-.+||||++++|+||++  ++|+||||||+|..|...+|||..+..|
T Consensus       159 ~~~~~L~~~~p~~~~~~L~HgD~~~~Nilv~~~~~~i~gVlDWE~a~~GdP~~Dla~~l~~~  220 (223)
T cd05154         159 RLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLADLGWLLMYW  220 (223)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf             99999885577768850562788887089938999489998231256288499999998662


No 11 
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves 
Probab=99.94  E-value=1.2e-25  Score=185.55  Aligned_cols=147  Identities=24%  Similarity=0.421  Sum_probs=124.2

Q ss_pred             EEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             31004668120017999439958999821669988999999999998532677555100102677875224515578647
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
                      +++++.+|..|.+|+|++++++||||+........+...|..++++|+++++|||+|+....+      .+..+.+++|+
T Consensus         2 ~i~~l~~G~~N~~y~~~~~~~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~~~P~~~~~~~~------~~~~~~i~~~i   75 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGES------DGWSYLLMEWI   75 (155)
T ss_pred             CCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC------CCCEEEEEEEE
T ss_conf             721879987127699998996799997999855655999999999997569897879999626------99449999721


Q ss_pred             CCCCCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             887076899----8999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  106 KGSPLNHIS----DIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       106 ~G~~~~~~~----~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      +|+++...+    +..++++|+.|++||+...                                                
T Consensus        76 ~G~~l~~~~~~~~~~~~~~l~~~l~~lh~~~~------------------------------------------------  107 (155)
T cd05120          76 EGETLDEVSEEEKEDIAEQLAELLAKLHQLPL------------------------------------------------  107 (155)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC------------------------------------------------
T ss_conf             58633447988999999999999999864588------------------------------------------------


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHH
Q ss_conf             77744402234642256279604873162135680001989999864
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAW  228 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~  228 (316)
                        .++||||++++|+|++++++.+|||||+|+++++.||||.++..+
T Consensus       108 --~~l~H~Dl~~~Nil~~~~~~~~lIDwe~a~~~d~~~Dla~~~~~~  152 (155)
T cd05120         108 --LVLCHGDLHPGNILVDDGKILGIIDWEYAGYGPPAFDLAAALLFN  152 (155)
T ss_pred             --CEEECCCCCCCCEEEECCCEEEEECCHHCCCCCHHHHHHHHHHHH
T ss_conf             --326917678670899189979998174316388999999999761


No 12 
>pfam03881 Fructosamin_kin Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.
Probab=99.88  E-value=3.1e-20  Score=150.65  Aligned_cols=222  Identities=16%  Similarity=0.173  Sum_probs=149.0

Q ss_pred             CEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             605310046681200179994399589998216699889999999999985326-7755510010267787522451557
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      ++++.+++++|..|..|+|+|+.++|++|+-.+ ........|..-|+.|++.+ ++||+|+..-      ...+..+.|
T Consensus        17 ~i~~~~~v~GGdIn~a~~l~~~~~~~FvK~~~~-~~~~~F~~Ea~gL~~L~~~~~~~vP~vi~~g------~~~~~~~Lv   89 (287)
T pfam03881        17 TITEREKVGGGDINQAYRISDGEQRYFVKLNER-EALAMFEAEAEGLELLARTQTIRVPRVIAWG------STRDHSFLV   89 (287)
T ss_pred             CCCEEEECCCCCHHHEEEEEECCCCEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEC------CCCCCEEEE
T ss_conf             310334428841733688980897689996795-4278999999999989866998899568863------459964899


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCC---------CCCCCCCCHHHHHHHHHH-HHHCCC----H-HHH
Q ss_conf             8647887076899899999999864367530--6875---------433231124564576675-200155----2-278
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKT--KNFH---------LYRKNTLSPLNLKFLWAK-CFDKVD----E-DLK  164 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~--~~f~---------~~r~~~~~~~~~~~~~~~-~~~~~~----~-~~~  164 (316)
                      ++||+-.   ..++..-.++|+.||+||+..  ..|-         ....|.+...|.....+. +.+.++    . ...
T Consensus        90 le~i~~~---~~~~~~~~~LG~~LA~LH~~~~~~~FGf~~d~~iG~~~Q~N~w~~~W~~Ff~~~RL~~ql~~~~~~~~~~  166 (287)
T pfam03881        90 LEYLPLG---PDNTGSAYQLGQQLAKLHQWGEQKQFGFDFDNTIGSTPQPNRWQSSWADFFAEQRIGWQLQLAKEKGLSF  166 (287)
T ss_pred             EEECCCC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             8610358---9980789999999999871489889889888987760468987688999999982999999999749976


Q ss_pred             HHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             89999999888765210777-44402234642256279604873162135680001989999864311688878788999
Q gi|254780795|r  165 KEIDHEFCFLKESWPKNLPT-GIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFS  243 (316)
Q Consensus       165 ~~l~~~l~~~~~~~~~~Lp~-g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~  243 (316)
                      ..+...++.+.+..+...|. +++||||+.+|++++.+....+|| =-|.++.+-+|||++-      -.|.++.    .
T Consensus       167 ~~~~~l~~~l~~~l~~~~~~PsLlHGDLW~GN~~~~~~G~p~liD-PA~yyG~rE~DLAm~~------lFggf~~----~  235 (287)
T pfam03881       167 GDIDRLVERVADLLSGHQPQPSLLHGDLWSGNAAFTADGEPVIFD-PACYYGDRECDLAMTE------LFGGFPP----D  235 (287)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEEC-CHHCCCCCHHHHHHHH------HCCCCCH----H
T ss_conf             779999999999842589983002255356525584799878975-4311577077678777------3278759----9


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9988764188998999999999
Q gi|254780795|r  244 ILNGYNKVRKISENELQSLPTL  265 (316)
Q Consensus       244 ~l~gY~~vrpLs~~E~~~l~~l  265 (316)
                      |.++|+++.||.+.-.+..+++
T Consensus       236 Fy~~Y~~~~Pl~~g~~~R~~lY  257 (287)
T pfam03881       236 FYDGYQSVYPLDEGYEERKPLY  257 (287)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHH
T ss_conf             9999997279982889999999


No 13 
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=99.88  E-value=1.8e-21  Score=158.65  Aligned_cols=165  Identities=18%  Similarity=0.256  Sum_probs=128.7

Q ss_pred             EEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             53100466812001799943995899982166998-89999999999985326775551001026778752245155786
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ++++++++|.+|.||+|++.+++||+|++.+.... .+-..|...++.+++.|+. |+++..-.        ..-+.|++
T Consensus         1 ~~i~~l~gGlTN~~y~v~~~~~~yvlRi~~~~~~~~idR~~E~~~~~~~~~~gl~-P~~~~~d~--------~~g~~i~e   71 (170)
T cd05151           1 IHISPLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIG-PKLYYFDP--------ETGVLITE   71 (170)
T ss_pred             CEEEECCCCCCCCEEEEEECCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHCCCC-CEEEEEEC--------CCCEEEEE
T ss_conf             9468848852288799998996899981898741010899999999999974999-82799966--------89969999


Q ss_pred             CCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             478870768---99899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  104 FIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       104 ~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      |++|.....   .+++.+.++++.++++|....                                               
T Consensus        72 ~i~g~~~~~~~~~~~~~~~~la~~l~~lH~~~~-----------------------------------------------  104 (170)
T cd05151          72 FIEGSELLTEDFSDPENLEKIAKLLKKLHSSPL-----------------------------------------------  104 (170)
T ss_pred             EECCCCCCCHHHCCHHHHHHHHHHHHHHHCCCC-----------------------------------------------
T ss_conf             766850582120899999999999999857999-----------------------------------------------


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             0777444022346422562796048731621356800019899998643116888787889999988764188
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRK  253 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrp  253 (316)
                       .|..+||||++++|+|++++++. +||||+|+.+.+.||||..++.      ..++.+....|++.|...-|
T Consensus       105 -~~~v~cHnDl~~~Nil~~~~~~~-lIDwEYa~~~dp~fDlA~~~~~------~~l~~~~~~~ll~~Y~~~~~  169 (170)
T cd05151         105 -PDLVPCHNDLLPGNFLLDDGRLW-LIDWEYAGMNDPLFDLANFFSE------AKLSEDQEEELLEAYFGREP  169 (170)
T ss_pred             -CCCEECCCCCCCCCEEEECCEEE-EEEHHHCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHHHHCCCC
T ss_conf             -99660268898021998899089-9840125678879999999988------48999999999999818999


No 14 
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=99.87  E-value=5.6e-20  Score=148.92  Aligned_cols=226  Identities=21%  Similarity=0.285  Sum_probs=139.2

Q ss_pred             EEEECCCCCEEEEEEEEECC--------CCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             31004668120017999439--------95899982166998-8999999999998532677555100102677875224
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSK--------GTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~--------~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +++.|+||++|.+|+|+..+        .++++|||-+.+.. .+-..|...+..|+++|+. |+.+-.-        .|
T Consensus         2 ~v~~l~GGiTN~ly~v~~~~~~~~~~~~~~vlvRIyG~~te~~IdR~~E~~~~~~Ls~~gig-pkl~~~F--------~n   72 (302)
T cd05156           2 EVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERNLG-PKLYGIF--------PN   72 (302)
T ss_pred             EEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEE--------CC
T ss_conf             69990774146118998378776678888699994889866327769999999999975999-7189992--------89


Q ss_pred             CCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH------HHHHHHHHHHHHCCCHHHH---
Q ss_conf             5155786478870768---998999999998643675306875433231124------5645766752001552278---
Q gi|254780795|r   97 KPANIFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSP------LNLKFLWAKCFDKVDEDLK---  164 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~---  164 (316)
                        ..+.+|++|+++..   .++.....+++.||++|..-.... ..+....+      ..|................   
T Consensus        73 --Grieefi~g~~L~~~dl~~p~~~~~IA~~l~~lH~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  149 (302)
T cd05156          73 --GRIEEFIPSRTLTTEELRDPDISAEIARRMAKLHSIVVPLS-PEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLL  149 (302)
T ss_pred             --CEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             --65999878701896781496899999999998844667788-863334444999999999860100133204666665


Q ss_pred             ----HHHHHHH----HHHHHHH--HHCCCCCEEECCCCCCCEEECC-----CCCEEEECCCCCCCCHHHCCHHHHHHHHH
Q ss_conf             ----8999999----9888765--2107774440223464225627-----96048731621356800019899998643
Q gi|254780795|r  165 ----KEIDHEF----CFLKESW--PKNLPTGIIHADLFPDNVLFYN-----NKIMGLIDFYFSCNDFLMYDLSICINAWC  229 (316)
Q Consensus       165 ----~~l~~~l----~~~~~~~--~~~Lp~g~IHgDl~~~NiL~~~-----~~i~giIDF~~~~~~~~i~DLAi~i~~~c  229 (316)
                          .......    ..+.+..  ....|-.+||+|+.++|+|.++     +++. +||||+|++.+++||||--.+-||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVfcHNDLl~gNil~~~~~~~~~~l~-~IDfEYag~N~r~fDiaNhF~E~~  228 (302)
T cd05156         150 EVELSLFLEDEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLV-LIDFEYASYNYRGFDIANHFCEWM  228 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCEE-EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4578889999999999999750203689768765477755078616767777269-998503666702677888889886


Q ss_pred             HCCCC------------CCCHHHHHHHHHHHHHC-------CCCCHHHHHHHHH
Q ss_conf             11688------------87878899999887641-------8899899999999
Q gi|254780795|r  230 FDENN------------TYNPSRGFSILNGYNKV-------RKISENELQSLPT  264 (316)
Q Consensus       230 ~~~~~------------~~d~~~~~~~l~gY~~v-------rpLs~~E~~~l~~  264 (316)
                      .+.+.            -.+.+....|++.|-+.       ..-++.|.+.|..
T Consensus       229 ~dY~~~~~p~~~~d~~~yPs~e~q~~Fi~~Yl~~~~~~~~~~~~~~~~v~~l~~  282 (302)
T cd05156         229 YDYHDPEPPFFKIHEDKYPTEEQRLNFISAYLSESLKGKNSVEEREKEVKDLLE  282 (302)
T ss_pred             HCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             104778788630476669099999999999999852456787725999999999


No 15 
>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]
Probab=99.87  E-value=9.4e-20  Score=147.48  Aligned_cols=244  Identities=14%  Similarity=0.184  Sum_probs=162.3

Q ss_pred             CCCHHHHHHHHH-HCC-CCCEEEEEECCCCCEEEEEEEEECCCCEEEEEE---CCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             089999999998-489-986053100466812001799943995899982---166998899999999999853267755
Q gi|254780795|r    6 HPPQKEIQSFVQ-EYA-IGQLNSVQPIIHGVENSNFVIQTSKGTFILTIY---EKRMNEKDLPVFIELLHYISRNKLPCP   80 (316)
Q Consensus         6 ~ls~~el~~il~-~y~-lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~---e~~~~~~~l~~~~~ll~~L~~~gipvP   80 (316)
                      .+....+...+. +.. .-....+..+++|..|.+|++..+..+||||.-   ...........+..+|..|....+|||
T Consensus         7 ~~~~~~l~~~l~~~ip~~~~~~~v~~~~~G~sn~t~~~~~~~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p   86 (321)
T COG3173           7 ALDIAALAAYLRSQIPGYAGLLIVEEISGGWSNDTFRLGDTGQKYVLRKPPRGDPVESAHDEKREYRVIAALLDVDVPVP   86 (321)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             67999999999966767678762100368754305897358845787668765540246677758999997467899986


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC-----CCH-HHHH-HHHHHHHHHHHHC-CCCCCCCC----CCCCHHHH
Q ss_conf             51001026778752245155786478870768-----998-9999-9999864367530-68754332----31124564
Q gi|254780795|r   81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNH-----ISD-IHCE-EIGSMLASMHQKT-KNFHLYRK----NTLSPLNL  148 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~-----~~~-~~~~-~lG~~La~lH~~~-~~f~~~r~----~~~~~~~~  148 (316)
                      .++---...+    .|.||.|++|++|+....     ... .... .+|+.||.||++- .+++....    .......|
T Consensus        87 ~~~~~~~~~~----~g~pf~v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~  162 (321)
T COG3173          87 RAFGLCGEGY----LGTPFYVMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARW  162 (321)
T ss_pred             CCCCCCCCCC----CCCCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             2122466677----788559998744645267677544358899999999999985799767898786675233304678


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHH
Q ss_conf             5766752001552278899999998887652-107774440223464225627960487316213568000198999986
Q gi|254780795|r  149 KFLWAKCFDKVDEDLKKEIDHEFCFLKESWP-KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINA  227 (316)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~  227 (316)
                      ...+....... ............++....| .+-+.+++|||++++|+|+++++.+|||||+-+..|.+..||++.|  
T Consensus       163 ~~~~~~~~~~~-~~~~p~~~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~Dl~~~~--  239 (321)
T COG3173         163 DDEYRRAKKEL-GGRIPLADRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLEDLAIIC--  239 (321)
T ss_pred             HHHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHH--
T ss_conf             89999998741-677826899999998558876789656647755687887289725899655666688389988988--


Q ss_pred             HHHCCCC----CCC--HHHHHHHHHHHHHCCCCCH
Q ss_conf             4311688----878--7889999988764188998
Q gi|254780795|r  228 WCFDENN----TYN--PSRGFSILNGYNKVRKISE  256 (316)
Q Consensus       228 ~c~~~~~----~~d--~~~~~~~l~gY~~vrpLs~  256 (316)
                      |+....-    .+.  ..-...+++.|...+-+..
T Consensus       240 W~~~~~~~~~~~~~~~~~~~~~l~a~y~~~~G~~~  274 (321)
T COG3173         240 WTIFDEPAARAIFRLGVPALDELLATYARARGLAL  274 (321)
T ss_pred             HCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             40454433331026676518999999998349464


No 16 
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=99.86  E-value=4.3e-20  Score=149.69  Aligned_cols=193  Identities=19%  Similarity=0.303  Sum_probs=124.4

Q ss_pred             EEEEECCCCCEEEEEEEEECC---CCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             531004668120017999439---95899982166998-89999999999985326775551001026778752245155
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTSK---GTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~~---~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +++++|+||++|.||+|+...   .+||+|||-+.++. -+=..|...+..|++.|+ .|+.+..-+        |  ..
T Consensus         1 i~v~~l~GGlTN~~y~v~~~~~~~~~~v~Ri~G~~te~~IdR~~E~~~~~~l~~~gl-~p~l~~~f~--------~--gr   69 (235)
T cd05157           1 ITFKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL-APKLYATFQ--------N--GL   69 (235)
T ss_pred             CEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHCCC-CCCEEEECC--------C--CE
T ss_conf             969982785367428998658998789999388986734778999999999998599-971899759--------9--77


Q ss_pred             EEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCC----CCC-C-CHHHHHHHHHHHH-------HCCCHHHH
Q ss_conf             786478870768---998999999998643675306875433----231-1-2456457667520-------01552278
Q gi|254780795|r  101 IFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYR----KNT-L-SPLNLKFLWAKCF-------DKVDEDLK  164 (316)
Q Consensus       101 L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r----~~~-~-~~~~~~~~~~~~~-------~~~~~~~~  164 (316)
                      |.+|++|+++..   .++..+..+++.|++||+.-.......    ... + .+..|.....+..       ........
T Consensus        70 ieefi~g~~l~~~d~~~~~~~~~IA~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (235)
T cd05157          70 IYEFIPGRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISF  149 (235)
T ss_pred             EEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             99977785599678009489999999999986476756643345664528999999999857653005655120012219


Q ss_pred             HHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEEC--CCCCEEEECCCCCCCCHHHCCHHHHHHHHH
Q ss_conf             89999999888765-210777444022346422562--796048731621356800019899998643
Q gi|254780795|r  165 KEIDHEFCFLKESW-PKNLPTGIIHADLFPDNVLFY--NNKIMGLIDFYFSCNDFLMYDLSICINAWC  229 (316)
Q Consensus       165 ~~l~~~l~~~~~~~-~~~Lp~g~IHgDl~~~NiL~~--~~~i~giIDF~~~~~~~~i~DLAi~i~~~c  229 (316)
                      ..+.+.+..+.+.. ....|..+||+|+.++|+|++  ++++. +||||+|+++++.||||-..+-||
T Consensus       150 ~~l~~~~~~l~~~l~~~~~~~v~CHNDL~~~Nil~~~~~~~l~-lIDfEYag~N~~~fDiAN~F~E~~  216 (235)
T cd05157         150 EQLRDEISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVK-FIDYEYAGYNYRAFDIANHFNEWA  216 (235)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCEE-EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             9999999999999734699802444668745467617999589-997788888831888999998864


No 17 
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=99.85  E-value=6.2e-20  Score=148.65  Aligned_cols=205  Identities=17%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             EEEC-CCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             1004-668120017999439958999821669988999999999998532-67755510010267787522451557864
Q gi|254780795|r   27 VQPI-IHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        27 ~~~i-~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      ++++ ++|..|.+|+|   ..++|+|+=........+..|..++..|+.+ .+|||.|+..-...   ..-..++.+++|
T Consensus         2 i~~~~~~G~dN~~~rl---G~~~v~R~Prr~~~a~~l~~E~~~L~~La~~lpv~VP~pv~~g~p~---~~yp~pw~v~~~   75 (235)
T cd05155           2 IEPVDSGGTDNATFRL---GDDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPG---EGYPWPWSVYRW   75 (235)
T ss_pred             CCCCCCCCCEEEEEEE---CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCC---CCCCCCCEEEEC
T ss_conf             7655789840148996---8887997579701599999999999987243887889843328985---568976344521


Q ss_pred             CCCCCCCCC---C-HHHHHHHHHHHHHHHHHCC-CCCC-CCCCC---CCHHHHHHHHHHH----HHCCCHHHHHHHHHHH
Q ss_conf             788707689---9-8999999998643675306-8754-33231---1245645766752----0015522788999999
Q gi|254780795|r  105 IKGSPLNHI---S-DIHCEEIGSMLASMHQKTK-NFHL-YRKNT---LSPLNLKFLWAKC----FDKVDEDLKKEIDHEF  171 (316)
Q Consensus       105 i~G~~~~~~---~-~~~~~~lG~~La~lH~~~~-~f~~-~r~~~---~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l  171 (316)
                      ++|+.....   + .....++|+.|+.||.+.. +.+. ...+.   .....+.......    ....+......+-   
T Consensus        76 l~G~~~~~~~~~~~~~~a~~La~~L~aLH~id~~~~~~~g~~~~~r~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~w---  152 (235)
T cd05155          76 LEGETATAAALSDPSEFAEDLADFLAALRQIDPSGGPPAGRHNFLRGGDLAVRDAETREAIEALEGVIDVDAARALW---  152 (235)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH---
T ss_conf             68877874676787999999999999973789656886676664445678999899999998733664779999999---


Q ss_pred             HHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             988876521077744402234642256279604873162135680001989999864311688878788999998876
Q gi|254780795|r  172 CFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYN  249 (316)
Q Consensus       172 ~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~  249 (316)
                      +.... .+..-+..+||||++++|||+++++++|||||++++.|..++|||++   |.+     ++.+--+.|.+.|.
T Consensus       153 ~~al~-~p~~~~~v~vHGDl~p~NvLv~dgrlsgVIDwg~~~vGDPA~DLa~a---w~~-----~~~~~r~~f~~~~~  221 (235)
T cd05155         153 EAALR-APWWGPPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVGDPACDLAIA---WTL-----LDEDSRAAFRAALG  221 (235)
T ss_pred             HHHHH-CCCCCCCEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCHHHHHHH---HHH-----CCHHHHHHHHHHHC
T ss_conf             99974-75768988770798887189889928999877777658818999999---984-----79889999999858


No 18 
>TIGR02721 ycfN_thiK thiamine kinase; InterPro: IPR014093   Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (ThiK), and additional proteobacterial homologues taken to be orthologs with equivalent function..
Probab=99.74  E-value=5e-17  Score=129.84  Aligned_cols=202  Identities=18%  Similarity=0.287  Sum_probs=142.3

Q ss_pred             ECCCCCEEEEEEEEECCC-CEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             046681200179994399-589998216699--88999999999998532677555100102677875224515578647
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKG-TFILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
                      ...+|.+|.+|+|+...| .||.|--.+...  ..+=..|.++|++|+..++. |+|+.-..          -+.|++|+
T Consensus         3 ~~~gGLtn~sw~i~~~~G~~~V~R~~s~~~~~~g~~R~rEy~~L~~l~~~~la-P~~~~~~~----------~wllVEWL   71 (262)
T TIGR02721         3 TLSGGLTNESWRIEAHQGISFVWRRQSPVDKQLGVDRQREYAILQALSAVKLA-PKPILVNE----------HWLLVEWL   71 (262)
T ss_pred             ECCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEECC----------CCEEEEEC
T ss_conf             21545505426764189725883268874121460258899999741305788-84477638----------71688604


Q ss_pred             CCCCCCC-----CCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HH
Q ss_conf             8870768-----9989999999986436753068-754332311245645766752001552278899999998887-65
Q gi|254780795|r  106 KGSPLNH-----ISDIHCEEIGSMLASMHQKTKN-FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE-SW  178 (316)
Q Consensus       106 ~G~~~~~-----~~~~~~~~lG~~La~lH~~~~~-f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~  178 (316)
                      ||+....     ...+...+++..|+++|..... .++.     -.......|..+.+.   .........++.+.+ ..
T Consensus        72 ~G~v~~~dka~~~~l~~~~~~A~~l~~lh~~p~~g~p~~-----l~~~~~~YW~~~dp~---r~tp~~lr~~~~f~~~~~  143 (262)
T TIGR02721        72 EGEVITKDKAEFVALDLLGELAALLAQLHSQPRFGYPLS-----LKARIAQYWLQIDPA---RRTPEWLRLYKQFRSAPE  143 (262)
T ss_pred             CCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHCCC
T ss_conf             875413543235562001368999999710578888724-----488999864650787---256999999999964577


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             210777444022346422562796048731621356800019899998643116888787889999988764188998
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE  256 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~  256 (316)
                      |.-|+-.+||-|.|.+|++.....+. +||||+|+.|...+|||..+.      .+.+|....+.|++.|++.|.+.+
T Consensus       144 p~~l~laplH~Dvh~~Nlv~~~~G~k-LIDWEYA~dgDialeLa~~~~------~n~~d~~~~~~~~~~Yc~~~~~~~  214 (262)
T TIGR02721       144 PAPLKLAPLHMDVHAYNLVVTPQGLK-LIDWEYASDGDIALELAAIIR------ANHWDEEQQQDFVQRYCQRRRIYS  214 (262)
T ss_pred             CCHHHHHHHHCCCCCCCCEECCCCCE-EEHHHCCCCCCHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHCCCH
T ss_conf             44044300330346431244588753-531111034677899999999------713781689999999987621542


No 19 
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported 
Probab=99.74  E-value=1.6e-16  Score=126.51  Aligned_cols=217  Identities=14%  Similarity=0.246  Sum_probs=127.3

Q ss_pred             HHHHCCCCC-EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             998489986-05310046681200179994399-5899982166998899999999999853267755510010267787
Q gi|254780795|r   15 FVQEYAIGQ-LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        15 il~~y~lg~-~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
                      +....||.- ..+++---.|..|..-++...+| +||+|+-+...-...++.|..++..|+.+ +|++.|-....     
T Consensus         3 ~a~~~gl~~~~~~~~~ne~G~Df~v~~~~d~~G~~WV~R~PRr~e~~~~l~~E~~~L~~l~~~-Lp~~VP~~~i~-----   76 (276)
T cd05152           3 LARKHGLTLKPETLSLNESGLDFQVVFAKDTDGVPWVLRIPRRPDVSERAAAEKRVLALVRKH-LPVQVPDWRVH-----   76 (276)
T ss_pred             HHHHCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEC-----
T ss_conf             357519986767414446666405999984789776895589778999999999999986105-87688980513-----


Q ss_pred             HHCCCCEEEEECCCCCCC----------------CCCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCHHHHHH
Q ss_conf             522451557864788707----------------68998999999998643675306------87543323112456457
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPL----------------NHISDIHCEEIGSMLASMHQKTK------NFHLYRKNTLSPLNLKF  150 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~----------------~~~~~~~~~~lG~~La~lH~~~~------~f~~~r~~~~~~~~~~~  150 (316)
                         +...+.|++++|++.                ...++....++|+.|+.||....      +++....... -..+..
T Consensus        77 ---~~eliaYp~L~G~P~~~~d~~~~~~~w~~d~~~~~~~~a~~Lg~~LaaLHsip~~~~~~~G~p~~~~~~~-r~~~~~  152 (276)
T cd05152          77 ---TPELIAYPKLPGVPAATIDPEIGEYVWNFDHKNPPEVFIESLAKALAELHSIPQDEAEAAGIPVETPEEV-RQTMAD  152 (276)
T ss_pred             ---CCCCEEECCCCCEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHH-HHHHHH
T ss_conf             ---7742120453884221103332552112566665679999999999998678988898679987899999-999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH--HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHH
Q ss_conf             66752001552278899999998887--652107774440223464225627-960487316213568000198999986
Q gi|254780795|r  151 LWAKCFDKVDEDLKKEIDHEFCFLKE--SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINA  227 (316)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~  227 (316)
                      .++......... ...+......+..  .|+  ...++||||++++|||+++ ++|+|||||++++.|.+++|+|--.. 
T Consensus       153 ~~~~~~~~~~v~-~~L~~Rwe~~L~d~~~w~--~~~~lvHGDL~~~hiLvd~~~rvtGVIDW~da~VGDPA~Dfa~l~~-  228 (276)
T cd05152         153 RMDRVKEEFGVS-EALWNRWQAWLDDDSYWP--RHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPARDFVLHYR-  228 (276)
T ss_pred             HHHHHHHCCCCC-HHHHHHHHHHHCCCCCCC--CCCEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHH-
T ss_conf             999998603778-799999999845412367--8863463575577079848985899844301477884899999998-


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             4311688878788999998876418
Q gi|254780795|r  228 WCFDENNTYNPSRGFSILNGYNKVR  252 (316)
Q Consensus       228 ~c~~~~~~~d~~~~~~~l~gY~~vr  252 (316)
                             .+.++-...+|+.|.+..
T Consensus       229 -------~~g~~~l~~~l~~Y~~ag  246 (276)
T cd05152         229 -------IFGEAGLERLIDAYEAAG  246 (276)
T ss_pred             -------HCCHHHHHHHHHHHHHCC
T ss_conf             -------728899999999999758


No 20 
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73  E-value=7.6e-16  Score=122.19  Aligned_cols=226  Identities=15%  Similarity=0.209  Sum_probs=142.1

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHH
Q ss_conf             99848998605310046681200179994399589998216699889999999999985326-77555100102677875
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~   93 (316)
                      +..+.+.+++++.+.+++|-.|.-|.|.+...+|++|.-.. ........|..=|+.|++.+ +.||+||..      ..
T Consensus         9 lse~lg~~~i~er~~v~gG~inea~~v~dg~~~~FvK~n~~-~~~~~f~AEa~gL~~la~s~ti~VP~vi~~------G~   81 (286)
T COG3001           9 LSEQLGEGEIKEREEVSGGDINEAWRLRDGTDPFFVKCNQR-EQLSMFTAEADGLELLARSNTITVPKVIAV------GA   81 (286)
T ss_pred             HHHHHCCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECCH-HHHHHHHHHHHHHHHHHHCCCCCCCCEEEE------CC
T ss_conf             99870814444005568864020357513885247870625-678789998877999987187346615884------47


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CC---------CCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             22451557864788707689989999999986436753068--75---------43323112456457667520015522
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN--FH---------LYRKNTLSPLNLKFLWAKCFDKVDED  162 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~--f~---------~~r~~~~~~~~~~~~~~~~~~~~~~~  162 (316)
                      .++..+.|++|+|=.   ..+....+++|+.||+||+++..  |-         ...+|.|...|.....++.....-+.
T Consensus        82 ~~~~sylVle~L~~~---~~d~~s~~~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlql  158 (286)
T COG3001          82 SRDHSYLVLEYLPTG---PLDAHSAFILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQL  158 (286)
T ss_pred             CCCEEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             787068998623679---99823689999999999861376566765666457878898772349999898652499999


Q ss_pred             HH------HHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCEEECCCCCEEEECCCCCC-CCHHHCCHHHHHHHHHHCCCC
Q ss_conf             78------89999999888765210777-44402234642256279604873162135-680001989999864311688
Q gi|254780795|r  163 LK------KEIDHEFCFLKESWPKNLPT-GIIHADLFPDNVLFYNNKIMGLIDFYFSC-NDFLMYDLSICINAWCFDENN  234 (316)
Q Consensus       163 ~~------~~l~~~l~~~~~~~~~~Lp~-g~IHgDl~~~NiL~~~~~i~giIDF~~~~-~~~~i~DLAi~i~~~c~~~~~  234 (316)
                      .+      ..++.....+.+...+.-|+ +++|||++.+|+.+-.+... ++  |=|| +|.+-.|||++=      -.|
T Consensus       159 ar~rg~~f~did~~~~~i~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv-~f--DPA~y~GDrE~Dlam~e------lFg  229 (286)
T COG3001         159 ARERGLTFGDIDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPV-IF--DPACYWGDRECDLAMLE------LFG  229 (286)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCE-EE--CCCCCCCCCCCCEEHHH------HHC
T ss_conf             9980898567999999999987227999530114522243223578973-54--65012688431310675------516


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHH--HHHHHH
Q ss_conf             87878899999887641889989--999999
Q gi|254780795|r  235 TYNPSRGFSILNGYNKVRKISEN--ELQSLP  263 (316)
Q Consensus       235 ~~d~~~~~~~l~gY~~vrpLs~~--E~~~l~  263 (316)
                      .+-    ..|-+||+|+.||.+.  |++.++
T Consensus       230 gfp----~efy~gY~sv~PL~~G~~eRk~iY  256 (286)
T COG3001         230 GFP----PEFYDGYQSVSPLPAGYLERKPIY  256 (286)
T ss_pred             CCC----HHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             776----999976640688987647776899


No 21 
>TIGR02904 spore_ysxE spore coat protein YsxE; InterPro: IPR014253   Members of this entry, which includes the Bacillus subtilis protein YsxE, are found only in the family Bacillaceae, part of the the endospore-forming group within the Firmicutes. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat and is a homologue of CotS (IPR014255 from INTERPRO)..
Probab=99.72  E-value=7.8e-16  Score=122.13  Aligned_cols=245  Identities=15%  Similarity=0.188  Sum_probs=162.0

Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHH
Q ss_conf             99999848998605310046681200179994399589998216699889999999999985326775551-00102677
Q gi|254780795|r   12 IQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIP-IPRNDGKL   90 (316)
Q Consensus        12 l~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~p-i~~~~G~~   90 (316)
                      ++.||.+|+| ....++.+    .+..++|.|++|-|-||-..  .+...++.++..+..|.++|++==.| .+|++|++
T Consensus         1 ~~~vL~~Y~l-~P~~~E~V----~~k~~kvytd~G~fALK~~~--~~~~~~~~f~~~~~~L~~kg~~~~vPvY~t~~G~y   73 (313)
T TIGR02904         1 YEAVLEQYGL-QPEEMEQV----TGKLVKVYTDQGVFALKKLE--ADRNTVEEFVSQIQVLKEKGFSRIVPVYPTKDGEY   73 (313)
T ss_pred             CCHHHHHCCC-CCCCEEEE----CCCEEEEECCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCH
T ss_conf             9112523278-83101454----16389987689864255437--77878999999999998768984200000376203


Q ss_pred             HHHHCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------CCCHHHHHHHHHHHH
Q ss_conf             8752245155786478-87076899899999999864367530687543323-------------112456457667520
Q gi|254780795|r   91 YGFLCKKPANIFSFIK-GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKN-------------TLSPLNLKFLWAKCF  156 (316)
Q Consensus        91 ~~~~~~k~~~L~~~i~-G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~-------------~~~~~~~~~~~~~~~  156 (316)
                      +..-+++.+.|+||++ ++.... ...+...+-+.||.||+.+..=..-...             ......+...+.++.
T Consensus        74 ~~~~g~~~YYLmPW~~r~e~~~~-~~~~~~~~f~~La~lH~~T~kt~~~~~E~~~~~ye~~~~~W~~~~~~~e~fi~~~E  152 (313)
T TIGR02904        74 LLFAGEKLYYLMPWLDREERKEE-RNEQHEKMFRELALLHRKTVKTEEVTEEELKKHYERTKSRWEREKEVLEEFIVEAE  152 (313)
T ss_pred             HHHCCCCCCCCCHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22224522344302311555465-67899999999999866643110112888888888778875101779999999998


Q ss_pred             H--CCCHHH-------------HHHHHHHHHHHHHHH--HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC
Q ss_conf             0--155227-------------889999999888765--21077744402234642256279604873162135680001
Q gi|254780795|r  157 D--KVDEDL-------------KKEIDHEFCFLKESW--PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY  219 (316)
Q Consensus       157 ~--~~~~~~-------------~~~l~~~l~~~~~~~--~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~  219 (316)
                      .  .+++=.             .+...+.++...+..  ...-+..+|||=+-+.-.|+++.+-.=+|-||-|..++++.
T Consensus       153 ~~~YMSPFeL~~c~yY~~v~~A~~fa~~~L~~W~E~~~e~~~~R~~l~HGkls~~H~l~~~~~~gYf~nfE~A~~~~P~~  232 (313)
T TIGR02904       153 AKWYMSPFELQACTYYHEVMRAAEFAKNKLEDWHEATKEKESARTVLVHGKLSLSHFLYDETREGYFINFEKASFASPLT  232 (313)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHEEEECCCCCCEEHHHHHCCCCCHH
T ss_conf             52288858999999877899999999988889987522003131000326535212003138896410044323699677


Q ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             98999986431168887878899999887641889989999999999
Q gi|254780795|r  220 DLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLL  266 (316)
Q Consensus       220 DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll  266 (316)
                      ||+..+.- .+ ...+...+-+-.-+.-|++..||+++|+.+|...|
T Consensus       233 Dl~~f~~r-~~-~~~p~~~~E~~~w~~~Y~k~~PL~~~E~~Ll~syL  277 (313)
T TIGR02904       233 DLIAFFRR-SL-KTYPVEEDEVVEWLYTYEKELPLTDEEILLLLSYL  277 (313)
T ss_pred             HHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             89999998-75-01785057899998887732796377899999985


No 22 
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=99.71  E-value=1.6e-15  Score=120.06  Aligned_cols=224  Identities=16%  Similarity=0.170  Sum_probs=139.2

Q ss_pred             ECCCCCE-EEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf             0466812-001799943995899982166998899999999999853267755510010267787522451557864788
Q gi|254780795|r   29 PIIHGVE-NSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG  107 (316)
Q Consensus        29 ~i~~G~~-Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G  107 (316)
                      +++.|.. -+.|++....+.|.||+-- .....++.-|...|.+|+.+ +|||+++..      ..-++..+.|++.++|
T Consensus         5 ~~~~G~SgA~V~r~~~~~~~~ylK~~~-~~~~~~l~~Ea~rl~WL~~~-~pvP~Vl~~------~~~~~~~~Llt~av~G   76 (244)
T cd05150           5 RVTEGQSGATVYRLDGKNPGLYLKIAP-SGPTYELEREAERLRWLAGK-LPVPEVIDY------GSDDGRAWLLTSAVPG   76 (244)
T ss_pred             CCCCCCCCCEEEEECCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCC-CCCCEEEEE------ECCCCCCEEEEECCCC
T ss_conf             167887778799970799857999665-88733369999999998505-999759996------0258874688943389


Q ss_pred             CCCCCC----C-HHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHHC--CCHHH-HHHHHHHHHHHHHH
Q ss_conf             707689----9-899999999864367530-6875433231124564576675-2001--55227-88999999988876
Q gi|254780795|r  108 SPLNHI----S-DIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFDK--VDEDL-KKEIDHEFCFLKES  177 (316)
Q Consensus       108 ~~~~~~----~-~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~l~~~l~~~~~~  177 (316)
                      ++....    + ...+..+|+.|.+||... .+.|..+.-...+.......+. ..+.  ++... -.--.+.++.+...
T Consensus        77 ~~a~~~~~~~~~~~~~~~lA~~Lr~LH~lp~~~CPf~~~l~~~l~~A~~~~~~g~vd~~d~~~~~~g~~~~el~~~l~~~  156 (244)
T cd05150          77 VPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEAT  156 (244)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHC
T ss_conf             75444455439999999999999985389921189866289999999999970688945676100499999999999843


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             52107774440223464225627960487316213568000198999986431168887878899999887641889989
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISEN  257 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~  257 (316)
                      .|..-...+||||+.+.|+|+++++++|+|||+-++.+.+.+|||.++.  +...+. ..+.....|++.|-..  --+.
T Consensus       157 ~p~~~~~v~~HGD~~~~N~l~~~~~~~g~iD~~~~g~aDr~~DLa~~~~--sl~~n~-~~~~~~~~Fl~~YG~~--~~D~  231 (244)
T cd05150         157 RPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVADRYQDLALAVR--SLRENL-GGEEYAARFLDRYGID--APDP  231 (244)
T ss_pred             CCCCCCCEEECCCCCCCCEEEECCEEEEEEECCCCCCCCHHHHHHHHHH--HHHHCC-CCHHHHHHHHHHCCCC--CCCH
T ss_conf             9975684787788888888985891899997666677777999999996--775306-9838999999980999--8998


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780795|r  258 ELQSLPTL  265 (316)
Q Consensus       258 E~~~l~~l  265 (316)
                      |+-..+.+
T Consensus       232 ~rl~~y~l  239 (244)
T cd05150         232 EKLAYYRL  239 (244)
T ss_pred             HHHHHHHH
T ss_conf             99999998


No 23 
>pfam01633 Choline_kinase Choline/ethanolamine kinase. Choline kinase catalyses the committed step in the synthesis of phosphatidylcholine by the CDP-choline pathway. This alignment covers the protein kinase portion of the protein. The divergence of this family makes it very difficult to create a model that specifically predicts choline/ethanolamine kinases only. However if Choline_kinase_C is also present then it is definitely a member of this family.
Probab=99.71  E-value=5.2e-16  Score=123.28  Aligned_cols=176  Identities=18%  Similarity=0.196  Sum_probs=111.5

Q ss_pred             CCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC---CCHHHHHH
Q ss_conf             995899982166998-89999999999985326775551001026778752245155786478870768---99899999
Q gi|254780795|r   45 KGTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNH---ISDIHCEE  120 (316)
Q Consensus        45 ~~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~---~~~~~~~~  120 (316)
                      .++||+|||-+.++. .+-..|...+..|++.|+. |+++..-.|          ..|.+|++|+++..   .++.....
T Consensus         2 ~~~vl~Ri~G~~te~~IdR~~E~~~~~~l~~~gl~-p~~~~~f~~----------~~i~efi~g~~l~~~dl~~~~~~~~   70 (208)
T pfam01633         2 PRKVLVRIYGAGTELFIDRETEIVIFALLSERGLG-PKLYGFFPN----------GRVEEFIPSRTLSAEDLRDPEISKK   70 (208)
T ss_pred             CCEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEECC----------CCEEEEECCCCCCHHHCCCHHHHHH
T ss_conf             98899985889857507789999999999985999-827999289----------8679978775389568259999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH-HHCCCCCEEECCCC
Q ss_conf             99986436753068754332311-2456457667520015------5227889999999888765-21077744402234
Q gi|254780795|r  121 IGSMLASMHQKTKNFHLYRKNTL-SPLNLKFLWAKCFDKV------DEDLKKEIDHEFCFLKESW-PKNLPTGIIHADLF  192 (316)
Q Consensus       121 lG~~La~lH~~~~~f~~~r~~~~-~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~-~~~Lp~g~IHgDl~  192 (316)
                      +++.|++||......... +..+ ....|...........      .......+.+.+..+.+.. ....|..+||+|++
T Consensus        71 ia~~L~~lH~~~~~~~~~-~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~v~cHNDL~  149 (208)
T pfam01633        71 IAKRLREFHDIEPPGKKS-PSLWDTIRKWLKQAKELGESVNKSKGLKLIDLEDLEKEINELEKLLENLESPIVFCHNDLQ  149 (208)
T ss_pred             HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             999999996687888899-8789999999999876123200102312014999999999999999616998166540588


Q ss_pred             CCCEEEC--CCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCC
Q ss_conf             6422562--7960487316213568000198999986431168
Q gi|254780795|r  193 PDNVLFY--NNKIMGLIDFYFSCNDFLMYDLSICINAWCFDEN  233 (316)
Q Consensus       193 ~~NiL~~--~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~  233 (316)
                      ++|+|+.  ++++. +||||+|++++++||||--.+-||.+.+
T Consensus       150 ~~Nil~~~~~~~l~-lID~EYag~n~~~fDiAn~F~E~~~~y~  191 (208)
T pfam01633       150 PGNILLLESTNRLV-LIDFEYASYNYRAFDIANHFCEWAGDYH  191 (208)
T ss_pred             CCCEEEECCCCEEE-EEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             66665628998499-9988405668516749999999864558


No 24 
>PTZ00296 choline kinase; Provisional
Probab=99.68  E-value=7e-14  Score=109.47  Aligned_cols=244  Identities=18%  Similarity=0.219  Sum_probs=141.9

Q ss_pred             EEEEECCCCCEEEEEEEEECC----------CCEEEEEECCCCCHH-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             531004668120017999439----------958999821669988-999999999998532677555100102677875
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTSK----------GTFILTIYEKRMNEK-DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~~----------~~yiLri~e~~~~~~-~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~   93 (316)
                      +.++.|.+|.+|.-|.|....          .++.+|||-+.++.- +=..|..+-..|+++|+- |+..-        .
T Consensus       106 ~~v~qi~~gltnqlf~v~~~~~~~~~~~~~~~kVLvRIYG~~td~fiDR~~E~~vF~lLSe~glG-PKLyG--------~  176 (439)
T PTZ00296        106 LCVKQILSGLTNQLFEVGIKEDTAIEYHIIRRHVLFRIYGKDVDALYNPISEFEVYKTMSKYKIA-PLLLN--------T  176 (439)
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCC-CEEEE--------E
T ss_conf             33999874213522899863144545654015489997369955476728999999999867999-80799--------8


Q ss_pred             HCCCCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHHHHHHC--CCHH
Q ss_conf             2245155786478870768---99899999999864367530687543323112------45645766752001--5522
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLS------PLNLKFLWAKCFDK--VDED  162 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~------~~~~~~~~~~~~~~--~~~~  162 (316)
                      +.|  .++-+|++|+.+..   -+++....+|+.||++|..-.....+..-...      ...|.....+..+.  ....
T Consensus       177 Fpn--GRIEEFI~grtLtt~dLrdP~IS~~IA~kLaefH~l~~p~~~p~~wdr~p~l~~~m~kW~~~l~~~~~~~~~~~d  254 (439)
T PTZ00296        177 FDG--GRIEEWLYGDPLRIDDLKNKSILIGIANVLGKFHTLSRKRHLPEHWDKTPCIFKMMDKWKLALSKYKNIDKVKLD  254 (439)
T ss_pred             CCC--CEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf             389--567874078427967856988999999999997387665678987654235999999999984214544320021


Q ss_pred             HHHHH---HHHHHHHH--HH-HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCC-
Q ss_conf             78899---99999888--76-5210777444022346422562796048731621356800019899998643116888-
Q gi|254780795|r  163 LKKEI---DHEFCFLK--ES-WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNT-  235 (316)
Q Consensus       163 ~~~~l---~~~l~~~~--~~-~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~-  235 (316)
                      +...+   ........  .. ..-..|-.+||+|+..+||+-.++.++ +||||+|++.++.||+|--.+-|+++.+.. 
T Consensus       255 l~~~~~e~e~~~~~l~l~s~l~~~~~~vvFCHNDL~~~NIl~~~~~l~-~IDfEY~~yNy~~fDIaNHFcE~~~dY~~~~  333 (439)
T PTZ00296        255 IHKYIKESEKFIKFIKIYSKIDNIANAIVFCHNDLQENNIINTNKCLR-LIDFEYSGFNFLAADIANFFIETSIDYSVNA  333 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEE-EEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             877777899999999998641255687355413253023535888479-9985035667214568888776511468889


Q ss_pred             -----------CCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf             -----------7878899999887641------889989999999999---9999999999999876
Q gi|254780795|r  236 -----------YNPSRGFSILNGYNKV------RKISENELQSLPTLL---RGAALRFFLTRLYDSQ  282 (316)
Q Consensus       236 -----------~d~~~~~~~l~gY~~v------rpLs~~E~~~l~~ll---~~aalRf~lsrl~d~~  282 (316)
                                 ...+.-..|+..|-+.      ..-++++.+.+-..+   ..|+-=||-  +|...
T Consensus       334 ~P~f~~d~~~YPs~e~q~~Fi~~YL~~~~~~~~~~~~~~~ve~ll~eVe~faLaSHLfWg--lWsII  398 (439)
T PTZ00296        334 YPFFIIDKKKYISYENRILFITAYLSKYLDDSLAAPDPDIIDQFLEAIEVQALGAHLIWA--FWSII  398 (439)
T ss_pred             CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf             985202701196989999999999987506678899889999999999998898899999--99998


No 25 
>KOG2686 consensus
Probab=99.62  E-value=2.2e-13  Score=106.32  Aligned_cols=230  Identities=19%  Similarity=0.211  Sum_probs=143.5

Q ss_pred             CEEEEEECCCCCEEEEEEEEECCC---------CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             605310046681200179994399---------58999821669988999999999998532677555100102677875
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTSKG---------TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~~~---------~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~   93 (316)
                      ...+++.|.+|..|++|.++....         ++.||||....+..+...+.....+|+.+|+- |+.        +..
T Consensus        41 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~LlRiyg~~~~~~~~~~Esv~fa~lSer~lG-PkL--------~G~  111 (366)
T KOG2686          41 EEQRLEVIPGGGSNLLFVVTSSASTTPIKDEPRKVLLRIYGQGVDFSQRETESVMFAILSERGLG-PKL--------YGF  111 (366)
T ss_pred             HHHEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CCE--------EEE
T ss_conf             35325533577765479994576667865665206888725873377765478999997532778-600--------200


Q ss_pred             HCCCCEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----------
Q ss_conf             224515578647887076---8998999999998643675306875433231124564576675200155----------
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLN---HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD----------  160 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~---~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~----------  160 (316)
                      +.|  ..+=+|+|-+.+.   -..++....+|..++++|..  ..+..+.....+...+.+.........          
T Consensus       112 F~~--GR~EefipSRtL~~~~i~~p~~S~~Ia~~~~~~H~~--~~p~~ke~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~  187 (366)
T KOG2686         112 FSG--GRFEEFIPSRTLTLADIRDPEISKRIAAKLAEYHGI--EVPGPKEPRSLWERYKKWLKGAKKIKPTEVSYSCGPD  187 (366)
T ss_pred             CCC--CCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
T ss_conf             278--607661355334167542524789999999871677--6888854799999999998655404787552001542


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCC---
Q ss_conf             227889999999888765-2107774440223464225627--9604873162135680001989999864311688---
Q gi|254780795|r  161 EDLKKEIDHEFCFLKESW-PKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENN---  234 (316)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~-~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~---  234 (316)
                      .-....+..++..+.+.. ..+-|.++||+|+-.+|+|..+  +.++ +|||++|+++|+.||||--.+-|..+...   
T Consensus       188 ~~~~~~l~~e~~~~~~~~e~~~~~vvFcHNDlq~gNiL~~~~t~~Lv-~IDfEYasyN~r~fDlanHf~E~~~DY~~~~~  266 (366)
T KOG2686         188 KLEIEDLLLELSLFRKWSELTKSPVVFCHNDLQYGNILLLNSTKELV-LIDFEYASYNPRGFDLANHFCEWAADYHTPTP  266 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCEE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             34698899999999999854788756553656545321323778536-88642466782035378888875242367999


Q ss_pred             ---------CCCHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHH
Q ss_conf             ---------878788999998876418-----89989999999999
Q gi|254780795|r  235 ---------TYNPSRGFSILNGYNKVR-----KISENELQSLPTLL  266 (316)
Q Consensus       235 ---------~~d~~~~~~~l~gY~~vr-----pLs~~E~~~l~~ll  266 (316)
                               .-+++..+.|+.+|-+..     .-.+.|...|+.-+
T Consensus       267 P~~~~~~~~~p~~e~~~~F~~sYl~~~~~~~~~~~~~ev~~L~~e~  312 (366)
T KOG2686         267 PGLKINPDLYPGEEQRQRFIESYLDSAAVKRKEPREKEVEKLLKEI  312 (366)
T ss_pred             CEEECCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             7050264118881999999999999862011273579999999998


No 26 
>KOG4720 consensus
Probab=99.56  E-value=2.3e-12  Score=99.60  Aligned_cols=260  Identities=15%  Similarity=0.224  Sum_probs=154.5

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEE--E-CCCCEEEEEECCCCCHHHHH--HHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf             9984899860531004668120017999--4-39958999821669988999--99999999853267755510010267
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQ--T-SKGTFILTIYEKRMNEKDLP--VFIELLHYISRNKLPCPIPIPRNDGK   89 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~--t-~~~~yiLri~e~~~~~~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~   89 (316)
                      +-.+|+..++ ++++.++|++|.-+-+.  + -...-..|+|-.+++. -++  .++..-..|+..|+. |+        
T Consensus        75 Lrp~W~~~~v-~~~~fs~gitNkL~~~~vg~~~e~~v~vrvyg~~te~-vIdre~Ev~afk~L~a~G~a-p~--------  143 (391)
T KOG4720          75 LRPHWKPPEV-TFKRFSDGITNKLFSCYVGENMEDHVLVRVYGHNTEL-VIDRENEVIAFKLLAAYGFA-PK--------  143 (391)
T ss_pred             HCCCCCCCCE-EEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCE-EECCHHHHHHHHHHHHCCCC-HH--------
T ss_conf             5435896101-5554234136777775325666406999841687750-12428889999999971767-12--------


Q ss_pred             HHHHHCCCCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH----CCC--
Q ss_conf             78752245155786478870768---998999999998643675306875433231124564576675200----155--
Q gi|254780795|r   90 LYGFLCKKPANIFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD----KVD--  160 (316)
Q Consensus        90 ~~~~~~~k~~~L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~----~~~--  160 (316)
                      .+..++|  ..+++|++|+.++.   -++.....+++.||+||..-..=..+.++  -+......++.+..    ..+  
T Consensus       144 Ly~tF~N--GLvyefi~g~tL~p~~mr~pki~~lIAr~mak~H~~~~~g~~pkp~--lw~km~~f~~lv~~~f~de~~kq  219 (391)
T KOG4720         144 LYGTFNN--GLVYEFIQGKTLEPEHMREPKIFRLIARRMAKIHSIVATGGNPKPP--LWEKMRKFLQLVPTSFEDEINKQ  219 (391)
T ss_pred             HHHEECC--CEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCC--HHHHHHHHHHHCCCHHHCCCCHH
T ss_conf             3410158--5677630674258665028378999999998761104578999982--89999999986683111032533


Q ss_pred             ----HHHHHHHHHHHHHHHHHHH-HCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCC-
Q ss_conf             ----2278899999998887652-107774440223464225627--96048731621356800019899998643116-
Q gi|254780795|r  161 ----EDLKKEIDHEFCFLKESWP-KNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAWCFDE-  232 (316)
Q Consensus       161 ----~~~~~~l~~~l~~~~~~~~-~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~-  232 (316)
                          ......+.+++.++++... -+-|--+||+|+-.+|++.+.  +.|. +|||+++++.+.+||++--.|-+|--. 
T Consensus       220 ~~~~~~~~~~L~~Ei~~l~E~l~~L~sPVVFcHNDLL~~Niiy~~~~~~v~-fIDYEYa~yNY~afDIgNHFnE~aGv~e  298 (391)
T KOG4720         220 NLFDEPSPEDLGEEISKLKEMLSMLKSPVVFCHNDLLCGNIIYDSEKGSVE-FIDYEYAGYNYQAFDIGNHFNEYAGVEE  298 (391)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCEEECCCCCCEE-EEEECCCCCCHHHEEHHHHHHHHCCCCC
T ss_conf             402489888999999999999985079869860442212353305668378-8861146665111005666786538876


Q ss_pred             -CCCC--CHHHHHHHHHHHHHCC---CCCHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHCCCHHHC
Q ss_conf             -8887--8788999998876418---89989999999999---9999999999--99987608851231
Q gi|254780795|r  233 -NNTY--NPSRGFSILNGYNKVR---KISENELQSLPTLL---RGAALRFFLT--RLYDSQNMPCNALT  290 (316)
Q Consensus       233 -~~~~--d~~~~~~~l~gY~~vr---pLs~~E~~~l~~ll---~~aalRf~ls--rl~d~~~~~~~~~~  290 (316)
                       +-..  ..+---++|+.|-+..   ..|+.|.+.|.+=.   ..|+-=||..  -++..+.+-+..++
T Consensus       299 vDYSlyp~rE~Q~qwl~~YLq~~kg~evs~~eVe~lfvqvn~FalAsHlfWavWAllQA~~StIdFdyl  367 (391)
T KOG4720         299 VDYSLYPTREEQLQWLRDYLQAYKGKEVSDTEVETLFVQVNQFALASHLFWAVWALLQAQNSTIDFDYL  367 (391)
T ss_pred             CCHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             641018788899999999975406755788999999999888988878999999999864075023320


No 27 
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=99.42  E-value=3.9e-12  Score=98.19  Aligned_cols=166  Identities=24%  Similarity=0.408  Sum_probs=101.8

Q ss_pred             EEECCCCCEEEEEEEEECCCCEEEEEECCC-----CCH----------HHHHHHHHHHHHHHHCCCCCCCCCCCC---HH
Q ss_conf             100466812001799943995899982166-----998----------899999999999853267755510010---26
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKGTFILTIYEKR-----MNE----------KDLPVFIELLHYISRNKLPCPIPIPRN---DG   88 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~~yiLri~e~~-----~~~----------~~l~~~~~ll~~L~~~gipvP~pi~~~---~G   88 (316)
                      +.|-++| .-|+|+|.+++.++|||.|...     ...          ..--.|..+|+.|.+.|+|||+||..+   .|
T Consensus        39 i~g~a~G-RGttwFv~~~~~~~vLRHY~RGGl~~k~~~D~Y~f~g~~~TRs~~Ef~LL~~L~~~glpVP~PvAa~v~r~g  117 (240)
T PRK01723         39 VVGSAKG-RGTTWFVQTEDGNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHG  117 (240)
T ss_pred             CCCCCCC-CEEEEEEECCCCCEEEECCCCCCCHHHCCCCCEECCCHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHEECC
T ss_conf             1103787-605899982897777540324660100134343317756554899999999999879999817777703236


Q ss_pred             HHHHHHCCCCEEEEECCCCCC-C------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             778752245155786478870-7------689989999999986436753068754332311245645766752001552
Q gi|254780795|r   89 KLYGFLCKKPANIFSFIKGSP-L------NHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE  161 (316)
Q Consensus        89 ~~~~~~~~k~~~L~~~i~G~~-~------~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~  161 (316)
                      -.+     +.-.|.+.|||.. +      ...+.+.-.++|+++++||.                               
T Consensus       118 ~~Y-----~Adiite~I~~a~~L~~~L~~~~l~~~~w~~iG~~I~~fH~-------------------------------  161 (240)
T PRK01723        118 LFY-----RADILIERIEGARDLVALLQEGPLSEEQWQAIGRLIARFHD-------------------------------  161 (240)
T ss_pred             EEE-----EHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH-------------------------------
T ss_conf             278-----83565635689704899985089988999999999999997-------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHC-----CHHHHHHHHHH---CC
Q ss_conf             278899999998887652107774440223464225627-9604873162135680001-----98999986431---16
Q gi|254780795|r  162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMY-----DLSICINAWCF---DE  232 (316)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~-----DLAi~i~~~c~---~~  232 (316)
                                            .|+.|.||+..|||+++ +++. +||||-|......-     -|+-..-++--   ..
T Consensus       162 ----------------------~gV~H~DLN~~NILid~~~~vw-lIDFDk~~~~~~~~~Wk~~NL~RL~RSl~Ke~~~~  218 (240)
T PRK01723        162 ----------------------AGVYHADLNAHNILLDAGGKFW-LIDFDRGELRTPATRWKQANLARLLRSFNKEQGKR  218 (240)
T ss_pred             ----------------------CCCCCCCCCHHHEEECCCCCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ----------------------4897666674416787999889-99886303368864488999999999899875225


Q ss_pred             CCCCCHHHHHHHHHHHHHCC
Q ss_conf             88878788999998876418
Q gi|254780795|r  233 NNTYNPSRGFSILNGYNKVR  252 (316)
Q Consensus       233 ~~~~d~~~~~~~l~gY~~vr  252 (316)
                      .-.+...-++.+++||++..
T Consensus       219 ~~~~~e~~W~~Ll~gY~~a~  238 (240)
T PRK01723        219 PIHFSEQNWQALLAGYQAAW  238 (240)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
T ss_conf             78878889999999999975


No 28 
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=99.41  E-value=7.9e-12  Score=96.18  Aligned_cols=131  Identities=24%  Similarity=0.351  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999999998532677555100102677875224515578647887076-89989999999986436753068754332
Q gi|254780795|r   62 LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLN-HISDIHCEEIGSMLASMHQKTKNFHLYRK  140 (316)
Q Consensus        62 l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~  140 (316)
                      .-.|.++|..+.+.|+|||.+..--        .++...+|+|++|..+. ..+.+.++++|+.+|+||.          
T Consensus       385 t~~EaR~l~r~~~~GV~~P~vy~vD--------~~~~~I~ME~I~G~~lkd~l~~~~~~~iG~~i~~lH~----------  446 (536)
T PRK09605        385 TRAEARLLSEARRAGVPTPIIYDID--------PENKTITMEYIGGKDLKDVISEELCEKVGEMVGKLHS----------  446 (536)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEE--------CCCCEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHH----------
T ss_conf             9999999999997699998489997--------7899899999789479999749999999999999973----------


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCC
Q ss_conf             31124564576675200155227889999999888765210777444022346422562796048731621356800019
Q gi|254780795|r  141 NTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYD  220 (316)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~D  220 (316)
                                                                 .++||||+..+|+++.++++. +|||+-+..+..+=|
T Consensus       447 -------------------------------------------~gIiHGDLTTsNiil~~~~i~-lIDFGLs~~s~~~Ed  482 (536)
T PRK09605        447 -------------------------------------------AGIVHGDLTTSNIIVRSDRTY-LIDFGLGKYSDLIED  482 (536)
T ss_pred             -------------------------------------------CCCCCCCCCHHHEEEECCCEE-EEECCCCCCCCCHHH
T ss_conf             -------------------------------------------997056773240788798899-997998778797576


Q ss_pred             HHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             89999864--31168887878899999887641889
Q gi|254780795|r  221 LSICINAW--CFDENNTYNPSRGFSILNGYNKVRKI  254 (316)
Q Consensus       221 LAi~i~~~--c~~~~~~~d~~~~~~~l~gY~~vrpL  254 (316)
                      -|+=+.=+  |+....+--.+.+..|++||.+..+-
T Consensus       483 kAVDL~VLeral~StH~~~e~l~~~~l~gY~~~~~~  518 (536)
T PRK09605        483 KAVDLHVLKQSLESTYDDFEELIKAFEEGYRKTFPD  518 (536)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             320099999999844998899999999999986247


No 29 
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.36  E-value=2.9e-11  Score=92.50  Aligned_cols=166  Identities=19%  Similarity=0.268  Sum_probs=115.4

Q ss_pred             ECCCCCEEEEEEEEECCCCEEEEEE-CCCCCHHHHH---------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             0466812001799943995899982-1669988999---------99999999853267755510010267787522451
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKGTFILTIY-EKRMNEKDLP---------VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~~yiLri~-e~~~~~~~l~---------~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      .|..|.+...|...--..+.|+|.= .++.--.+|+         .|..++..+...|+|||.+.-- +       .+..
T Consensus         3 ~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dv-D-------~~~~   74 (204)
T COG3642           3 LIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDV-D-------PDNG   74 (204)
T ss_pred             HHHCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-C-------CCCC
T ss_conf             3437861168863105852589850675557867899999888899999999999769998769997-3-------9987


Q ss_pred             EEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             5578647887076----899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   99 ANIFSFIKGSPLN----HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        99 ~~L~~~i~G~~~~----~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      ..+|+|++|..++    ...++.++++|+.+|+||.+                                           
T Consensus        75 ~I~me~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~-------------------------------------------  111 (204)
T COG3642          75 LIVMEYIEGELLKDALEEARPDLLREVGRLVGKLHKA-------------------------------------------  111 (204)
T ss_pred             EEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHC-------------------------------------------
T ss_conf             7999985881689998721668999999999988756-------------------------------------------


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             876521077744402234642256279604873162135680001989999864--311688878788999998876418
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAW--CFDENNTYNPSRGFSILNGYNKVR  252 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~--c~~~~~~~d~~~~~~~l~gY~~vr  252 (316)
                                |+||||+..+|+++.++++. +|||+-+-.+--+-|.|+=+.-+  |++....--.+.+.+|++||.+..
T Consensus       112 ----------givHGDLTtsNiIl~~~~i~-~IDfGLg~~s~~~Ed~aVDl~Vleral~sth~~~e~l~~~f~~gY~~~~  180 (204)
T COG3642         112 ----------GIVHGDLTTSNIILSGGRIY-FIDFGLGEFSDEVEDKAVDLHVLERALESTHEKAEELFAAFLEGYREEF  180 (204)
T ss_pred             ----------CEECCCCCCCEEEEECCCEE-EEECCCCCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             ----------80057886132898389689-9977843245617764011999999987405038999999999999875


Q ss_pred             CCCH
Q ss_conf             8998
Q gi|254780795|r  253 KISE  256 (316)
Q Consensus       253 pLs~  256 (316)
                      .-.+
T Consensus       181 ~~~~  184 (204)
T COG3642         181 GEAK  184 (204)
T ss_pred             CCHH
T ss_conf             0289


No 30 
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=99.33  E-value=2.1e-09  Score=80.56  Aligned_cols=212  Identities=17%  Similarity=0.239  Sum_probs=123.5

Q ss_pred             CCCCCCHHHHHHHHHHCCC----CCEEEEEECCCCCEEEEEEEEEC--CCCEEEEE-------E-CCC-CCHHHHHHHHH
Q ss_conf             5770899999999984899----86053100466812001799943--99589998-------2-166-99889999999
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAI----GQLNSVQPIIHGVENSNFVIQTS--KGTFILTI-------Y-EKR-MNEKDLPVFIE   67 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~l----g~~~~~~~i~~G~~Ntny~v~t~--~~~yiLri-------~-e~~-~~~~~l~~~~~   67 (316)
                      .|-+++.+++...+++.+.    ....+++.|..|-.|-.|+|+..  .+..|+|-       + |.. .+.+...+|.+
T Consensus         1 ~y~~L~~~~~~~y~~~~~~~~~~~~~~~~~EiGDGNlN~Vf~V~~~~~~~svIvKQAlpyvR~~geswpl~l~R~~~E~~   80 (398)
T PRK09550          1 GYEPLTEETAIEYAKELGLFASKAALWSAEEIGDGNLNLVFRVDDTNTKKSVIVKQALPYVRVVGESWPLTLDRARIEAE   80 (398)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHH
T ss_conf             97437777899999854776687656046896488548999996089983699982660102048878898669999999


Q ss_pred             HHHHHHHCCCC--CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99998532677--55510010267787522451557864788707-------6899899999999864367530687543
Q gi|254780795|r   68 LLHYISRNKLP--CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL-------NHISDIHCEEIGSMLASMHQKTKNFHLY  138 (316)
Q Consensus        68 ll~~L~~~gip--vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~-------~~~~~~~~~~lG~~La~lH~~~~~f~~~  138 (316)
                      .|..-++ -.|  ||++..--        ....+.+|+.+....+       ...-|.....+|+.+|+.+-.+.++.+.
T Consensus        81 ~L~~~~~-~~p~~vP~vy~~D--------~~~~~~vMEdLs~~~ilR~~Li~g~~~p~la~~ig~flA~tlf~tSd~~l~  151 (398)
T PRK09550         81 ALQAQAK-YVPGLVPKVYHHD--------PELAVTVMEDLSDHKILRKGLIAGKKYPKLAEHIGEFLARTLFYTSDLGLS  151 (398)
T ss_pred             HHHHHHH-HCCCCCCEEEEEC--------CHHHEEHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999986-6888688488886--------168410021075227799898668856438999999999986425533468


Q ss_pred             CCCCCCH------HHHHHHHHH------HH----HCCCHHHHH---------HHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf             3231124------564576675------20----015522788---------9999999888765210777444022346
Q gi|254780795|r  139 RKNTLSP------LNLKFLWAK------CF----DKVDEDLKK---------EIDHEFCFLKESWPKNLPTGIIHADLFP  193 (316)
Q Consensus       139 r~~~~~~------~~~~~~~~~------~~----~~~~~~~~~---------~l~~~l~~~~~~~~~~Lp~g~IHgDl~~  193 (316)
                      .......      ..+-.+-+.      ..    +...+.+..         .+..+...++.... +-+.++||||+|+
T Consensus       152 ~~~kk~~~~~f~N~eLc~ItEdlVFtdPy~d~~~N~~~~~l~~~v~~l~~D~~Lk~~v~~Lk~~F~-t~~eaLlHGDLHt  230 (398)
T PRK09550        152 SEEKKALVAQFTNPELCKITEDLVFTDPYFDHERNNIEPELDPDVAELWADKELKLEVARLKHKFL-TKAEALLHGDLHT  230 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH-CCCHHHHCCCCCC
T ss_conf             598999887227877887776445256643356677786469999998549999999999999873-3021543577767


Q ss_pred             CCEEECCCCCEEEECCCCCCCCHHHCCHHHHH
Q ss_conf             42256279604873162135680001989999
Q gi|254780795|r  194 DNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI  225 (316)
Q Consensus       194 ~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i  225 (316)
                      ++|+..++++. |||-|++-+||.-|||+..+
T Consensus       231 GSImv~~~~tk-VIDpEFaFyGP~GFDiG~~i  261 (398)
T PRK09550        231 GSIFVTEDETK-VIDPEFAFYGPIGFDIGQLI  261 (398)
T ss_pred             CCEEEECCCEE-EECCCCCCCCCCHHHHHHHH
T ss_conf             85787078417-96520103587412099999


No 31 
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=99.33  E-value=8.2e-11  Score=89.61  Aligned_cols=198  Identities=15%  Similarity=0.190  Sum_probs=104.4

Q ss_pred             EECCCCCEEEEEEEEECCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE-EEEECC
Q ss_conf             00466812001799943995-8999821669988999999999998532677555100102677875224515-578647
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSKGT-FILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA-NIFSFI  105 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~~~-yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~-~L~~~i  105 (316)
                      .++. |.+|..|++.-+..+ ++.|.+++...  .          +...++- |..+.++.+      .+... +-..|.
T Consensus        12 ~~~~-g~t~~~~~~~~~g~~~~~~r~~~p~~~--~----------~~~~~~~-~~l~~~~~~------~~~~~~~~q~~~   71 (269)
T COG0510          12 TPLN-GLTGYAFRIEGEGTRVFLKRNFEPFLP--A----------LIFRLIV-PKLLWLKRI------ANGGVLVAQYWE   71 (269)
T ss_pred             EECC-CCCCEEEEEECCCCEEEEECCCCCCCH--H----------HHHHHHH-HHHHHHHCC------CCCCCEEEEEEC
T ss_conf             1134-666704886369974444446687528--9----------9998634-777631012------667624653102


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf             8870768998999999998643675---3068754332311245645766752001552--2788999999988876521
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQ---KTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE--DLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~---~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~  180 (316)
                      .|+..... ......+...|+++|.   ....++.....   ...+..+.+.+......  .....+...+..+....++
T Consensus        72 ~~~~l~~~-~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  147 (269)
T COG0510          72 NGRTLTPE-DMNLKKIAHILKKLHNSVPLLHQLPRSGSS---FIEPKDYLELLWQQNSRAYRDNHLLRKKLKELRRALEE  147 (269)
T ss_pred             CCCCCCCC-CCCCHHHHHHHHHHHCCCCCHHHHHHCCCH---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             56114801-002188999999984554208888760646---65099999999961768775049999999999973410


Q ss_pred             -CCC-CCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf             -077-74440223464225627-96048731621356800019899998643116888787889999988764188998
Q gi|254780795|r  181 -NLP-TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE  256 (316)
Q Consensus       181 -~Lp-~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~  256 (316)
                       ..+ ..+||+|++++|.|..+ +++. +||||+||.+..++|||-.+.-+.++..      ........|-+..+...
T Consensus       148 ~~~~~~v~cH~Dl~~~N~l~t~~~~l~-LIDWEyAg~~D~~~DLA~~~~e~~~~~~------~~~~~~~~~~~~~~~~~  219 (269)
T COG0510         148 VPKDDLVPCHNDLNPGNLLLTDKGGLF-LIDWEYAGLNDPAFDLAALLSEYIFNHN------ELEDLYSAYLEKYGFEA  219 (269)
T ss_pred             CCCCCEEEECCCCCCCCEEECCCCCEE-EEECCCCCCCCHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHCCCHH
T ss_conf             276751444578984505785899689-9961457776589999999998564646------79999999986278428


No 32 
>PRK12396 5-methylribose kinase; Reviewed
Probab=99.26  E-value=3.5e-10  Score=85.52  Aligned_cols=214  Identities=15%  Similarity=0.188  Sum_probs=125.1

Q ss_pred             CCCCCCCCHHHHHHHHHHC----CCCCEEEEEECCCCCEEEEEEEEECCC--CEEEE-------EECC-CCCHHHHHHHH
Q ss_conf             9657708999999999848----998605310046681200179994399--58999-------8216-69988999999
Q gi|254780795|r    1 MAVYTHPPQKEIQSFVQEY----AIGQLNSVQPIIHGVENSNFVIQTSKG--TFILT-------IYEK-RMNEKDLPVFI   66 (316)
Q Consensus         1 MaVyt~ls~~el~~il~~y----~lg~~~~~~~i~~G~~Ntny~v~t~~~--~yiLr-------i~e~-~~~~~~l~~~~   66 (316)
                      |+-|-.++.+++-..+++.    +.....+++.|..|-.|-.|+|...++  ..|+|       +.+. ..+.+...+|.
T Consensus         4 ~~~y~~l~~~~~i~Y~k~~~~~f~~~~~l~~~EIGDGNLN~Vf~V~~~~~~~svivKQAlpyvRv~~~wpL~~~R~~~E~   83 (409)
T PRK12396          4 FTKYFLMEANDVIVYVKEKLCKFEHAKGLQCKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIES   83 (409)
T ss_pred             HHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCEEECCCCCCCHHHHHHHH
T ss_conf             35411076736999999826879998885368974785689999970898717999816760366689888866899999


Q ss_pred             HHHHHHHHCCCC--CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999998532677--55510010267787522451557864788707-------689989999999986436753068754
Q gi|254780795|r   67 ELLHYISRNKLP--CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL-------NHISDIHCEEIGSMLASMHQKTKNFHL  137 (316)
Q Consensus        67 ~ll~~L~~~gip--vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~-------~~~~~~~~~~lG~~La~lH~~~~~f~~  137 (316)
                      +.|...++. .|  ||++..--.        ...+.+|+.+....+       ...-|.....+|+.||+-+-.+.++.+
T Consensus        84 ~aL~~~~~~-~P~~vP~vy~~D~--------~~~~~vMEdLs~~~ilR~~Li~g~~~p~la~~ig~flA~Tlf~tSd~~l  154 (409)
T PRK12396         84 DVLQLEEEL-APGLVPKVYLFDS--------VMNCCVMEDLSDHTILRTALINHEIFPRLADDLTTFLVNTLLLTSDVVM  154 (409)
T ss_pred             HHHHHHHHH-CCCCCCEEEEECH--------HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999998856-8876774887661--------7866757754402559999877886730899999999998851253336


Q ss_pred             CCCCCCCHH--HHHHHHHHH----------HHC-----CCHH----HHH------HHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf             332311245--645766752----------001-----5522----788------9999999888765210777444022
Q gi|254780795|r  138 YRKNTLSPL--NLKFLWAKC----------FDK-----VDED----LKK------EIDHEFCFLKESWPKNLPTGIIHAD  190 (316)
Q Consensus       138 ~r~~~~~~~--~~~~~~~~~----------~~~-----~~~~----~~~------~l~~~l~~~~~~~~~~Lp~g~IHgD  190 (316)
                      .........  .....+.++          .+.     ..+.    ..+      .+..+...++...- +-+.++||||
T Consensus       155 ~~~~kK~~v~~f~N~eLc~ITEdlVFTdPy~~~~~~n~~~~~~~~~v~~~l~~D~~Lk~eva~LK~~Fm-t~aeaLlHGD  233 (409)
T PRK12396        155 NHKEKKELVKNYINPELCEITEDLVYAEPFTNHNKRNELFPLNEGWIREHIYSDKELRIEVAKLKFSFM-TNAQALIHGD  233 (409)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH-HCCHHHHCCC
T ss_conf             879999998853996776545653637776454447788854649999998509999999999999875-2002443267


Q ss_pred             CCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH
Q ss_conf             34642256279604873162135680001989999
Q gi|254780795|r  191 LFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI  225 (316)
Q Consensus       191 l~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i  225 (316)
                      ||.++|++.+++.. |||-|++-|||.-|||+..+
T Consensus       234 LHTGSImv~~~~tk-VIDpEFAFYGPmGFDiG~~i  267 (409)
T PRK12396        234 LHTGSVFVKNDSTK-VIDPEFAFYGPMGYDIGNVM  267 (409)
T ss_pred             CCCCCEEEECCCCE-EECCHHHCCCCCHHHHHHHH
T ss_conf             55675686078415-87620321687410099999


No 33 
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172.
Probab=99.24  E-value=2.7e-10  Score=86.24  Aligned_cols=208  Identities=18%  Similarity=0.245  Sum_probs=133.7

Q ss_pred             CCCCCEEEEEEEEECCCC-EEEEEECC-CC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC--CCEEEEEC
Q ss_conf             466812001799943995-89998216-69-988999999999998532677555100102677875224--51557864
Q gi|254780795|r   30 IIHGVENSNFVIQTSKGT-FILTIYEK-RM-NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK--KPANIFSF  104 (316)
Q Consensus        30 i~~G~~Ntny~v~t~~~~-yiLri~e~-~~-~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~--k~~~L~~~  104 (316)
                      ..+|-.-.||.  ..+++ ++||++.. +. +.+++-.+...-++..+=|||+|.|+.      +.+.++  |...++|.
T Consensus         9 ~GEG~~~~~Y~--hk~~~~~~lKL~~P~~~s~~~~~~~E~~~sr~~~~LGipTP~~~~------lV~~g~sGR~G~~YE~   80 (234)
T TIGR02172         9 TGEGANGESYT--HKTGKDILLKLYNPGECSDKETIKREFDASRKVFSLGIPTPKPID------LVEDGDSGRLGLIYEL   80 (234)
T ss_pred             HCCCCCCCCCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCEE------EEEECCCCCCCEEEEE
T ss_conf             14773214531--788863254417689988889999998862104531688885347------7876687641117888


Q ss_pred             CCCC-CCC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH
Q ss_conf             7887-076---8998999999998643675306875433231124564576675200---15522788999999988876
Q gi|254780795|r  105 IKGS-PLN---HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD---KVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus       105 i~G~-~~~---~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~  177 (316)
                      |.|+ ++.   .-+|+++.++.+.+|++-+.+-+.+-   +.-.....++.+.+..+   ......++.+.+.++    .
T Consensus        81 I~gKrSfSRiis~~P~~L~E~~k~fAe~akkLH~~~c---dt~~f~s~ke~~~~~i~ek~fvp~~~k~~~~a~i~----~  153 (234)
T TIGR02172        81 IKGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKC---DTSKFQSYKEKIRKFIEEKDFVPDDYKEKARAFIE----E  153 (234)
T ss_pred             EECCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH----H
T ss_conf             7175444233158832278999999987687468668---98766457899875103321573368999999986----2


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCC--CEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             5210777444022346422562796--04873162135680001989999864311688878788999998876418899
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNK--IMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKIS  255 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~--i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs  255 (316)
                      .|+.  .+=+|||+.++|++.++++  -. .||.++=++|.+.||||..   |.+-  ..++.++      +=+.+..++
T Consensus       154 vPd~--~tCLHGD~Q~GN~I~~g~~G~~y-WIDlG~FgyG~P~fDlg~~---f~~~--~~~~~~k------~~~~~FHM~  219 (234)
T TIGR02172       154 VPDT--KTCLHGDLQIGNLITSGKGGKTY-WIDLGDFGYGSPLFDLGLL---FMFC--NVLDDDK------ALQAIFHMN  219 (234)
T ss_pred             CCCC--CCCEECCCCCCCEEEECCCCCCC-EEECCCCCCCCHHHHHHHH---HHHH--CCCCCCH------HHHHHHCCC
T ss_conf             6898--88310123544168828988411-4565775779766899999---9985--5687223------579985167


Q ss_pred             HHHHHH-HHHHH
Q ss_conf             899999-99999
Q gi|254780795|r  256 ENELQS-LPTLL  266 (316)
Q Consensus       256 ~~E~~~-l~~ll  266 (316)
                      .+.++. |..+.
T Consensus       220 ~~~l~~~Wn~F~  231 (234)
T TIGR02172       220 EEQLKAHWNIFA  231 (234)
T ss_pred             HHHHHHHHHHHH
T ss_conf             889888877763


No 34 
>COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=99.23  E-value=3.8e-10  Score=85.31  Aligned_cols=218  Identities=15%  Similarity=0.101  Sum_probs=135.3

Q ss_pred             EEEEEEECCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC--
Q ss_conf             01799943995-899982166998899999999999853267755510010267787522451557864788707689--
Q gi|254780795|r   37 SNFVIQTSKGT-FILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHI--  113 (316)
Q Consensus        37 tny~v~t~~~~-yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~--  113 (316)
                      +.|++..+++. +.+|+- ......+|+-|.+-+.+|+.++++||.++.-.      ..++..+.+++-++|.....+  
T Consensus        34 ~v~rl~a~~r~g~~~k~~-~~~~~a~L~~Ea~RlrWla~~~l~~P~V~~~~------~~~~~~wLl~salpG~~~s~~~~  106 (266)
T COG3231          34 GVFRLFADSRPGLYLKIA-SSGPAAELEGEAARLRWLAGQGLGCPRVLGLE------DDADQAWLLMSALPGEDASHPRY  106 (266)
T ss_pred             EEEEEECCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEC------CCCCHHHHHHHHCCCCCCCCHHH
T ss_conf             578975067871699972-37624445648999877511379997257631------57646577664058976436131


Q ss_pred             --CH-HHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHH---CCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             --98-99999999864367530-6875433231124564576675-200---1552278899999998887652107774
Q gi|254780795|r  114 --SD-IHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFD---KVDEDLKKEIDHEFCFLKESWPKNLPTG  185 (316)
Q Consensus       114 --~~-~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~l~~~~~~~~~~Lp~g  185 (316)
                        ++ ..+..+++.|-.||... ..-|..+.-...+.......+. ..+   ..++..-....+.+..+....|..-.-.
T Consensus       107 ~~~p~r~v~~la~aLR~LH~l~~~aCPFd~rl~~rl~~a~~r~~a~~vdesdfd~e~qgr~~~El~d~L~~~rp~~edLV  186 (266)
T COG3231         107 ALDPKRAVPLLAEALRRLHELPVEACPFDRRLARRLAKARARVRAGLVDESDFDEERQGRTAEELFDELEARRPAVEDLV  186 (266)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHCCCCHHHCE
T ss_conf             07999999999999999842982008951489999999999875157884442744328877999999985188412115


Q ss_pred             EEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             44022346422562796048731621356800019899998643116888787889999988764188998999999999
Q gi|254780795|r  186 IIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTL  265 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~l  265 (316)
                      +||||.=.-|++.++++.+|+||++-.+.+.+-.|||.+.-+  ...+-. -......|++.|..  ...+.++..++.+
T Consensus       187 v~HGDACLPN~i~d~~rf~GfIDlGrlGVaDRh~DLala~~s--~~~nl~-g~~~~~~fl~~Yg~--~~~d~~rl~~yr~  261 (266)
T COG3231         187 VTHGDACLPNFILDGWRFSGFIDLGRLGVADRHQDLALATWS--LRFNLG-GDVWDDPFLDAYGR--GAIDPARLAYYRL  261 (266)
T ss_pred             EECCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHHCCC-CCHHHHHHHHHHCC--CCCCHHHHHHHHH
T ss_conf             631764576567528715776651765514777868999999--875058-20666799997386--7898788999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780795|r  266 L  266 (316)
Q Consensus       266 l  266 (316)
                      |
T Consensus       262 l  262 (266)
T COG3231         262 L  262 (266)
T ss_pred             H
T ss_conf             8


No 35 
>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]
Probab=99.22  E-value=1.4e-09  Score=81.69  Aligned_cols=216  Identities=15%  Similarity=0.190  Sum_probs=128.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98899999999999853267755510010--2677875224515578647887076899899999999864367530687
Q gi|254780795|r   58 NEKDLPVFIELLHYISRNKLPCPIPIPRN--DGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNF  135 (316)
Q Consensus        58 ~~~~l~~~~~ll~~L~~~gipvP~pi~~~--~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f  135 (316)
                      ..+++.-++.+-..|...|+.||+++..-  .|-.+.+-=|....+..      ...+-.+.....+..++.+|..+-.+
T Consensus        63 ~ae~v~~Fvai~~lL~~~Gv~vPqIla~Dld~GfllLedLG~e~~l~~------~g~~~~ery~~a~~ll~~~h~~~~~~  136 (351)
T COG3178          63 LAEDVRPFVAIAGLLAGQGVRVPQILAADLDQGFLLLEDLGRETFLQA------LGEPIAERYAAADALLAAAHGALVPL  136 (351)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHCCCHHHHHCCCHHHHHH------CCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf             176564899999998617867517764064227316864371777876------08970467887999999985684244


Q ss_pred             CCC-CCC-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEE
Q ss_conf             543-323-----------------11245645766752001552278899999998887652107774440223464225
Q gi|254780795|r  136 HLY-RKN-----------------TLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVL  197 (316)
Q Consensus       136 ~~~-r~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL  197 (316)
                      +.. ++.                 ++-+.|...  .+.--.++....+........+.... ..-|+.++|-|+|+-|++
T Consensus       137 q~~~~~g~~~~lp~fDr~am~~E~sLf~dWylp--r~~g~~l~~~~r~~~~aiwd~Lid~~-~~~~~vlvhRDfh~~NLm  213 (351)
T COG3178         137 QKAVREGSTHVLPPFDRAAMRREASLFVDWYLP--RHLGRPLTDAERQAWEAIWDGLIDSL-LAQPKVLVHRDFHSRNLM  213 (351)
T ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEEECCCCCCCCE
T ss_conf             404678987768862689999998765775339--87189888799999999999998887-428705644134675423


Q ss_pred             ECCC-----CCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHH
Q ss_conf             6279-----6048731621356800019899998643116888787889999988764188998---9999999999999
Q gi|254780795|r  198 FYNN-----KIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE---NELQSLPTLLRGA  269 (316)
Q Consensus       198 ~~~~-----~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~---~E~~~l~~ll~~a  269 (316)
                      |..+     ++ |||||-||.+||..||+|-.    ..+..-++.+++....+..|.+.|+...   +|-+-+-.+--|+
T Consensus       214 w~~~~~g~~rv-GvlDFQDA~iGP~aYDvasL----~~DArvt~~pe~~~~~l~rY~~~r~~~g~p~d~~~Flra~~~Mg  288 (351)
T COG3178         214 WTADRAGADRV-GVLDFQDALIGPIAYDVASL----LRDARVTWSPERELALLDRYWAARRAAGLPFDEAAFLRAYAWMG  288 (351)
T ss_pred             ECCCCCCCCCC-CEEEHHHHHCCCCHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             34776678887-65532444238511339999----76240147989999999999986041289967899999999988


Q ss_pred             HHHHH-HHHHHHHHHCCCH
Q ss_conf             99999-9999987608851
Q gi|254780795|r  270 ALRFF-LTRLYDSQNMPCN  287 (316)
Q Consensus       270 alRf~-lsrl~d~~~~~~~  287 (316)
                      |.|-. +.-++.....++|
T Consensus       289 aQR~~KvlGIFaRL~~RDG  307 (351)
T COG3178         289 AQRHLKVLGIFARLYYRDG  307 (351)
T ss_pred             HHHHHHHHHHHHHHHHCCC
T ss_conf             8887678777555232168


No 36 
>pfam07914 DUF1679 Protein of unknown function (DUF1679). The region featured in this family is found in a number of C. elegans proteins, in one case as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in ZnF_C4 and HLH domain-containing kinases. In fact, one member of this family is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (Interpro:IPR000536, Interpro:IPR008946, and Interpro:IPR001628).
Probab=99.20  E-value=9.8e-10  Score=82.62  Aligned_cols=254  Identities=15%  Similarity=0.182  Sum_probs=138.4

Q ss_pred             CCCCHHHHHHHHHH-CC----CCCEEEEEECCCC--CEEEEEEEEE-----CC-----CCEEEEEEC-------------
Q ss_conf             70899999999984-89----9860531004668--1200179994-----39-----958999821-------------
Q gi|254780795|r    5 THPPQKEIQSFVQE-YA----IGQLNSVQPIIHG--VENSNFVIQT-----SK-----GTFILTIYE-------------   54 (316)
Q Consensus         5 t~ls~~el~~il~~-y~----lg~~~~~~~i~~G--~~Ntny~v~t-----~~-----~~yiLri~e-------------   54 (316)
                      |+|+-++++..++. .|    +|+-..+..|+.|  ..-..-+|+.     ..     .||+|||.-             
T Consensus        11 THVtweDVe~~iq~~~~T~ak~G~n~k~~nI~D~~GFmSrI~lVe~dW~~~~~~~~LP~kf~lKIsS~l~~~~l~~~~~~   90 (413)
T pfam07914        11 THVTWEDVEKAIQEQLGTEAKFGENKKATNIGDGKGFMSRIALVEPDWTNVEPSKNLPKKFALKISSQLALVALSKKMKF   90 (413)
T ss_pred             CEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHC
T ss_conf             50459999999999848876216884366653673544503686048603787766874179985035779999999741


Q ss_pred             ---CCCCHHH-HHHHHH--------------HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC----CC
Q ss_conf             ---6699889-999999--------------9999853267755510010267787522451557864788707----68
Q gi|254780795|r   55 ---KRMNEKD-LPVFIE--------------LLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL----NH  112 (316)
Q Consensus        55 ---~~~~~~~-l~~~~~--------------ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~----~~  112 (316)
                         .....+. +..+..              ++.......+|.|++...+.=.  ..-.-|.+.+++|+|+-+.    ..
T Consensus        91 ~~~~~~~~e~~~~~f~~~~~~~HNrEVn~Ykil~k~n~~~i~~pKVY~~kkfd--~en~~KG~IimE~v~ni~~~~~y~n  168 (413)
T pfam07914        91 EGGNGFTEEKELKHFESSTRELHNREVNFYKILEKFNHPDIPYTKVYFLKKFD--DENDLKGYIIMEYVPNIHTRHMYEN  168 (413)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC--CCCCCCCEEEEEECCCCEEEECCCC
T ss_conf             37788876899999999878765479999999997068789874012302456--5677777788882488468725489


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHH-------------HHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             998999999998643675306875433231-12456457667-------------5200155227889999999888765
Q gi|254780795|r  113 ISDIHCEEIGSMLASMHQKTKNFHLYRKNT-LSPLNLKFLWA-------------KCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus       113 ~~~~~~~~lG~~La~lH~~~~~f~~~r~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      .+++++..+=+.+|+++..+...+-..... .+.......+.             ...........+.+.+....+....
T Consensus       169 i~~deL~~vv~~iA~fqA~~~~LseEE~k~i~g~df~~~~~~~~~~~~~~~~~f~~lr~~~g~~~~ekv~e~~~~~~~y~  248 (413)
T pfam07914       169 IPADELIPVLRAIATFQALGESLSEEEKKSANGADFLEQMFETFMSEEGLKGIFDQLRNIFGAEYPEKVEELVDIFEHYG  248 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_conf             89899999999999999864349989975356757999999987236779999999975411123899987789998737


Q ss_pred             ------------HH--CCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHH
Q ss_conf             ------------21--077744402234642256279-----60487316213568000198999986431168887878
Q gi|254780795|r  179 ------------PK--NLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPS  239 (316)
Q Consensus       179 ------------~~--~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~  239 (316)
                                  .+  ..+.-+||||++..|+||+.+     ++.+||||--+..+++..||+-.+.. |....+  -.+
T Consensus       249 ~~~~~~~k~~ni~~~lG~k~Vl~HgDlw~~NiL~~~~~~g~~~~~aiID~Q~~~~g~p~~Dl~rl~~~-~ls~~d--R~~  325 (413)
T pfam07914       249 PEILIFKKYTNLSKVLGIKPVLVHGDLWQSNILWSLDNDGKLKLKAIIDYQTVHMGNPAEDLVRLLLS-CLSGAD--RRA  325 (413)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCEEHHEEEHHHHCCCCHHHHHHHHHHH-CCCHHH--HHH
T ss_conf             23445898874787518754410475157650121377876000111110120568848889999983-598888--998


Q ss_pred             HHHHHHHHHHH---------CCCCCHHHHHHHH
Q ss_conf             89999988764---------1889989999999
Q gi|254780795|r  240 RGFSILNGYNK---------VRKISENELQSLP  263 (316)
Q Consensus       240 ~~~~~l~gY~~---------vrpLs~~E~~~l~  263 (316)
                      +...+|+-|..         .-|.|-+|++-=+
T Consensus       326 ~~~~lL~~y~~~f~~~l~~~~~p~t~eqL~~sY  358 (413)
T pfam07914       326 RWEELLEQYYETFTKVLGDNEEPYTLEQLKDSY  358 (413)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             799999999999998748888986899999999


No 37 
>PRK10271 thiK thiamine kinase; Provisional
Probab=99.19  E-value=2.8e-10  Score=86.14  Aligned_cols=139  Identities=17%  Similarity=0.311  Sum_probs=90.5

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             786478870768998999999998643675306-8754332311245645766752001-55227889999999888765
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTK-NFHLYRKNTLSPLNLKFLWAKCFDK-VDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~-~f~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +++|++|+......+.  -+++..++++|+... ++++.-+     ......+..+.++ .++...+....   +.....
T Consensus         2 ~Vewl~Gev~~~~~~~--~~La~Lla~LHq~P~~g~rL~L~-----~~l~~YWq~id~~r~sp~wlrl~~~---f~~~~~   71 (188)
T PRK10271          2 AVDYLPGEVKSALPDT--NELAGLLYHLHQQPRFGWRITLL-----PLLELYWQQSDPARRTPFWLRMLKR---LRKAGE   71 (188)
T ss_pred             CEEECCCHHHCCCCCH--HHHHHHHHHHHCCCCCCCCCCCH-----HHHHHHHHHCCHHHCCHHHHHHHHH---HHHCCC
T ss_conf             4020366243158972--68999999983589988876619-----9999999858964259999999999---985889


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             21077744402234642256279604873162135680001989999864311688878788999998876418899899
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENE  258 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E  258 (316)
                      |..++-++||-|+|++|++..++.+ .+||||+|+.+...+|||..+   ..      +......++.-|...+.+....
T Consensus        72 p~~lkla~~H~D~~~~Nli~~~~g~-~liDWEYAa~~d~~l~la~~~---~~------n~~~~~~~v~~Yc~~~~~d~~~  141 (188)
T PRK10271         72 PRPLRLAPLHMDVHAGNLVHSASGL-RLIDWEYAGDGDIALELAAVW---VE------NEEQHRQLVNDYATRAKIDPAQ  141 (188)
T ss_pred             CCCCCCCCCCCCCCCCCEEECCCCC-EEEEECCCCCCCHHHHHHHHH---HH------CCHHHHHHHHHHHHHCCCCHHH
T ss_conf             9852322000025654145517874-687541124567688999999---72------7478999999999870598789


Q ss_pred             H
Q ss_conf             9
Q gi|254780795|r  259 L  259 (316)
Q Consensus       259 ~  259 (316)
                      .
T Consensus       142 l  142 (188)
T PRK10271        142 L  142 (188)
T ss_pred             H
T ss_conf             9


No 38 
>KOG3021 consensus
Probab=99.17  E-value=9.1e-09  Score=76.38  Aligned_cols=224  Identities=20%  Similarity=0.203  Sum_probs=127.3

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHH
Q ss_conf             9984899860531004668120017999439958999821669988999999999998532-677555100102677875
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~pi~~~~G~~~~~   93 (316)
                      +.++-++..+..+....+|..+..-.-.|+.|++++|+-++ ..++...=++.-|+.+.++ -+.||+|++-.+     .
T Consensus         5 l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr~-~~~~mfeGE~~sLeAi~sT~tv~vprpikvid-----~   78 (313)
T KOG3021           5 LRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNRS-IARDMFEGELASLEAIQSTETVLVPRPIKVID-----L   78 (313)
T ss_pred             HHHHCCCCEEEEECCCCCCEECCCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHHCCCEECCCCEEEEE-----C
T ss_conf             98760833056504788753214544556776279986630-12688765788899998548430577514576-----5


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH---------------CCC-----------CC---------CC
Q ss_conf             22451557864788707689989999999986436753---------------068-----------75---------43
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQK---------------TKN-----------FH---------LY  138 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~---------------~~~-----------f~---------~~  138 (316)
                      -.|-.+.++++++=.+    ...+...+|..||+||.-               .++           |-         .+
T Consensus        79 p~Ggs~lime~idf~~----lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge~~e~~~v~~FGF~v~tccG~lp  154 (313)
T KOG3021          79 PGGGSSLIMEHIDFQG----LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGEEGEQIGVENFGFHVVTCCGRLP  154 (313)
T ss_pred             CCCCEEEEEEHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEECCCCC
T ss_conf             8996143011100145----104799998999998654688999988751554568655665420015526652015676


Q ss_pred             CCCCCCHHHHHHHHHHH-HHCCCHHHH----HHHHHHHHHHHHHHH---HC---CCCCEEECCCCCCCEEECCCCCEEEE
Q ss_conf             32311245645766752-001552278----899999998887652---10---77744402234642256279604873
Q gi|254780795|r  139 RKNTLSPLNLKFLWAKC-FDKVDEDLK----KEIDHEFCFLKESWP---KN---LPTGIIHADLFPDNVLFYNNKIMGLI  207 (316)
Q Consensus       139 r~~~~~~~~~~~~~~~~-~~~~~~~~~----~~l~~~l~~~~~~~~---~~---Lp~g~IHgDl~~~NiL~~~~~i~giI  207 (316)
                      ..|.|.-.|.....++. .+.++-...    +++.+.-..+..+.+   ++   +|. +.|||++.+||--++..-.-|.
T Consensus       155 QvNdW~edW~eFf~rhRlq~Qldl~~~~~~Dre~~el~~~L~~kia~Lf~~~eI~Pa-LlHGDLW~GNva~D~~~ePiIf  233 (313)
T KOG3021         155 QVNDWQEDWEEFFARHRLQPQLDLLEKTYGDREAFELWSILQTKIADLFKCLEILPA-LLHGDLWSGNVAEDGAGEPIIF  233 (313)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEHH-HHCCCCCCCCCCCCCCCCCEEE
T ss_conf             546404569999998753278889988625399999999999863787546444232-4316633675344679996576


Q ss_pred             CCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH-HHHH
Q ss_conf             1621356800019899998643116888787889999988764188998-9999
Q gi|254780795|r  208 DFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE-NELQ  260 (316)
Q Consensus       208 DF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~-~E~~  260 (316)
                      |= -+.|+..-||+||+   ||+   |.|    .+.|..+|+++-|-.+ .|..
T Consensus       234 DP-asfYgh~Efefgia---~mf---Ggf----~~sF~naY~k~ipka~G~eqR  276 (313)
T KOG3021         234 DP-ASFYGHSEFEFGIA---KMF---GGF----TQSFYNAYHKKIPKAPGFEQR  276 (313)
T ss_pred             CC-HHHCCCCHHHHHHH---HHH---CCC----CHHHHHHHHHHCCCCCCHHHH
T ss_conf             75-33038737888999---986---777----387899886316788867888


No 39 
>TIGR02905 spore_yutH spore coat protein YutH; InterPro: IPR014254    This entry, represented by the Bacillus subtilis protein YutH, is found only in the family Bacillaceae, part of the endospore-forming group within the Firmicutes. YutH has been shown to be involved in spore coat assmebly . Proteins in this entry are homologous to CotS (IPR014255 from INTERPRO)..
Probab=99.17  E-value=6.4e-10  Score=83.81  Aligned_cols=236  Identities=14%  Similarity=0.192  Sum_probs=153.6

Q ss_pred             ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             439958999821669988999999999998532677-5551001026778752245155786478870768998999999
Q gi|254780795|r   43 TSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEI  121 (316)
Q Consensus        43 t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~l  121 (316)
                      +++..|++ +=.+....+++.....+-+||.++|.+ |...|+|++|+....++|++++|+.--+-..-.......-.++
T Consensus        26 ~~nq~yl~-vP~~~~~~~E~aE~~~m~~yLq~~GD~~V~~l~~t~~G~~~a~~~G~~~~l~~~P~~~~r~g~r~Q~~~~~  104 (325)
T TIGR02905        26 AQNQLYLL-VPVDGLEEEELAELLEMSEYLQQAGDETVSELVKTKEGKLSAKIDGQSYYLLKAPEEAERRGVRLQSDEDL  104 (325)
T ss_pred             CCCCCEEE-CCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCEEECCHHH
T ss_conf             48872410-46331898899999999999985257402520025788447877381179987886111361143050766


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH-----------------------HHHHHHHHHHHHH
Q ss_conf             99864367530687543323112456457667520015522788-----------------------9999999888765
Q gi|254780795|r  122 GSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKK-----------------------EIDHEFCFLKESW  178 (316)
Q Consensus       122 G~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~l~~~~~~~  178 (316)
                      |+.||++|..++.++........+..|+.+|.|-.+.+..-..+                       +-+|.+..+....
T Consensus       105 Gr~LA~fH~~Gr~~~~~~~~~~riGqW~eLW~KRLdQlE~~w~~~l~qgP~~~~D~~FletFPYYlGltENAIQy~aDte  184 (325)
T TIGR02905       105 GRELATFHKRGRQYPSPIVKKSRIGQWKELWEKRLDQLEEFWQSLLAQGPETLFDRQFLETFPYYLGLTENAIQYLADTE  184 (325)
T ss_pred             HHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             68999998601678623312158887776798889999999999962477443567775226602124788999998633


Q ss_pred             HHCCCC-----CEEECCCCCCCEEE---CCCCCEEEECCCCCCCCHHHCCHHHHHHH-HHHCCCCCCCHH--HHHHHHHH
Q ss_conf             210777-----44402234642256---27960487316213568000198999986-431168887878--89999988
Q gi|254780795|r  179 PKNLPT-----GIIHADLFPDNVLF---YNNKIMGLIDFYFSCNDFLMYDLSICINA-WCFDENNTYNPS--RGFSILNG  247 (316)
Q Consensus       179 ~~~Lp~-----g~IHgDl~~~NiL~---~~~~i~giIDF~~~~~~~~i~DLAi~i~~-~c~~~~~~~d~~--~~~~~l~g  247 (316)
                      .++-|.     ++||-=|..+.-+.   +++.|.-=.||   .+|..+=|||==+-. .-+. ...-+..  ....|+.+
T Consensus       185 lD~~p~~~D~gTiCH~Rf~~~~W~~ms~~~~~~K~P~~w---VyDH~aRDLAEW~R~n~~~~-~~r~~~~al~i~~Fl~~  260 (325)
T TIGR02905       185 LDEEPGEADSGTICHERFTEETWLRMSERGGLIKVPTEW---VYDHAARDLAEWVRENRYLK-EIRKNQRALAIASFLQE  260 (325)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHEEECCCCCEECCCHHH---HCCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHC
T ss_conf             146887656764244435421002210478751267032---23673045799874002344-41143048899999840


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHH
Q ss_conf             76418899899999999999999999---999999876088512
Q gi|254780795|r  248 YNKVRKISENELQSLPTLLRGAALRF---FLTRLYDSQNMPCNA  288 (316)
Q Consensus       248 Y~~vrpLs~~E~~~l~~ll~~aalRf---~lsrl~d~~~~~~~~  288 (316)
                      |+++.|||+-=...++.=|     =|   ..-.+.+||..+...
T Consensus       261 Ye~~~PLt~f~wRl~YARL-----LFPLHYFE~iE~YY~~~~E~  299 (325)
T TIGR02905       261 YEQAAPLTSFSWRLMYARL-----LFPLHYFETIENYYIAQLES  299 (325)
T ss_pred             CCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHHHCCCCCHH
T ss_conf             1223766457899999885-----03111567665211688706


No 40 
>pfam02958 DUF227 Domain of unknown function (DUF227). This family includes a large number of drosophila proteins of unknown function. The family also includes several C. elegans proteins. The alignment contains many histidines and aspartates that are conserved, suggesting a metal binding and possibly a phosphoesterase function (A Bateman pers. obs.).
Probab=99.06  E-value=2.5e-09  Score=80.06  Aligned_cols=150  Identities=16%  Similarity=0.195  Sum_probs=80.2

Q ss_pred             CEEEEECC------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-------------CC--CCCHHHHHHHHHHHH
Q ss_conf             15578647------8870768998999999998643675306875433-------------23--112456457667520
Q gi|254780795|r   98 PANIFSFI------KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYR-------------KN--TLSPLNLKFLWAKCF  156 (316)
Q Consensus        98 ~~~L~~~i------~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r-------------~~--~~~~~~~~~~~~~~~  156 (316)
                      .+.|++=+      .|......+.+++..+-+.||+||.++-.+....             ..  .....++...+....
T Consensus        91 ~vlVLEDL~~~Gf~~~d~~~gl~~~~~~~~l~~LA~lHA~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (293)
T pfam02958        91 QVIILEDLSEKGYKNADRLKGLDLEHTKLVLKKLAQFHAASAALKELQPEFFKQLKKGPFEEDYVNGAKEEFEPLMETGL  170 (293)
T ss_pred             CEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             48998141642984354467999999999999999998999999986851166741242342110010489999999999


Q ss_pred             --------HCCC--HHHHHHHHH----HHHHHHHHH-HH-CCCCCEEECCCCCCCEEECC---C---CCEEEECCCCCCC
Q ss_conf             --------0155--227889999----999888765-21-07774440223464225627---9---6048731621356
Q gi|254780795|r  157 --------DKVD--EDLKKEIDH----EFCFLKESW-PK-NLPTGIIHADLFPDNVLFYN---N---KIMGLIDFYFSCN  214 (316)
Q Consensus       157 --------~~~~--~~~~~~l~~----~l~~~~~~~-~~-~Lp~g~IHgDl~~~NiL~~~---~---~i~giIDF~~~~~  214 (316)
                              ....  ....+.+..    ....+.... +. .-...+||||++.+|+||..   +   .+ .+|||-.+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~HGD~w~nN~mf~~d~~g~~~~~-~lvDfQ~~~~  249 (293)
T pfam02958       171 DAAAEALREQIPEYEKYAEKLEKLIDNYFDRLLRLVDPNPDEFNVLNHGDLWVNNIMFKYDEEGEPEDV-ILVDFQLSRY  249 (293)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHEEEEECCCCCEEEE-EEEECCCCCC
T ss_conf             999999986473517899999999999999999983778778659884654643064642799986318-9993785781


Q ss_pred             CHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8000198999986431168887878899999887641
Q gi|254780795|r  215 DFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKV  251 (316)
Q Consensus       215 ~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~v  251 (316)
                      ++.+.||+..+.. |...+  .-......+|+-|++.
T Consensus       250 g~p~~Dl~yfL~~-s~~~e--~R~~~~~~ll~~Y~~~  283 (293)
T pfam02958       250 GSPALDLLYFLYT-STSPE--LRLEHFDELLRYYHES  283 (293)
T ss_pred             CCHHHHHHHHHHH-CCCHH--HHHHHHHHHHHHHHHH
T ss_conf             8809999999997-89999--9999999999999999


No 41 
>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases
Probab=99.04  E-value=8.6e-10  Score=82.99  Aligned_cols=143  Identities=17%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------------CCHHHHHHHHHH----HHHCC----CHH
Q ss_conf             8870768998999999998643675306875433231---------------124564576675----20015----522
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNT---------------LSPLNLKFLWAK----CFDKV----DED  162 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~---------------~~~~~~~~~~~~----~~~~~----~~~  162 (316)
                      .|......+.+++..+-+.||+||.++-.+....+..               .....+......    .....    ...
T Consensus        13 ~~~~~~~~~~~~~~~~l~~LA~~HA~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (196)
T smart00587       13 NADRLKGLDLEHTSLVLKKLAKLHAASAVLIEEEKGSYLEEFDEGLFERFKRMFSEEFIGGLENFLRELLSQPELLKVEE   92 (196)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             37757898999999999999999656899987547666888532211246366899999999999999985412255699


Q ss_pred             HHHHHHHHHHHHHHH-----HHH-CCCCCEEECCCCCCCEEECCC---C--CEEEECCCCCCCCHHHCCHHHHHHHHHHC
Q ss_conf             788999999988876-----521-077744402234642256279---6--04873162135680001989999864311
Q gi|254780795|r  163 LKKEIDHEFCFLKES-----WPK-NLPTGIIHADLFPDNVLFYNN---K--IMGLIDFYFSCNDFLMYDLSICINAWCFD  231 (316)
Q Consensus       163 ~~~~l~~~l~~~~~~-----~~~-~Lp~g~IHgDl~~~NiL~~~~---~--i~giIDF~~~~~~~~i~DLAi~i~~~c~~  231 (316)
                      ..+.+......+...     .+. .-|..+||||++.+|++|+.+   +  ..++|||-.+.+++.++||+..+. .|.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~HGD~w~nN~lf~~d~~g~~~~~~liDfQ~~~~g~p~~Dl~~fl~-~s~~  171 (196)
T smart00587       93 YIEKLDKLLDNLEDLKKEDKEPDEGEFNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAEDLHYFLL-TSLS  171 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHCEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHH-HCCC
T ss_conf             999999988999999998426676785377715434311535107999833036642203045882999999999-8899


Q ss_pred             CCCCCCHHHHHHHHHHHHHC
Q ss_conf             68887878899999887641
Q gi|254780795|r  232 ENNTYNPSRGFSILNGYNKV  251 (316)
Q Consensus       232 ~~~~~d~~~~~~~l~gY~~v  251 (316)
                      .+  .-.+....+|+.|++.
T Consensus       172 ~~--~R~~~~~~lL~~Y~~~  189 (196)
T smart00587      172 VE--IRREHFDELLKFYYET  189 (196)
T ss_pred             HH--HHHHHHHHHHHHHHHH
T ss_conf             99--9999999999999999


No 42 
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=98.96  E-value=9.2e-09  Score=76.34  Aligned_cols=133  Identities=23%  Similarity=0.347  Sum_probs=80.9

Q ss_pred             ECCCCCEEEEEEEEECCCC-EEEEEECCC---------------------CCHH-----HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             0466812001799943995-899982166---------------------9988-----999999999998532677555
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKGT-FILTIYEKR---------------------MNEK-----DLPVFIELLHYISRNKLPCPI   81 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~~-yiLri~e~~---------------------~~~~-----~l~~~~~ll~~L~~~gipvP~   81 (316)
                      .|+.|=|-..|...+.+|. .++|+|.-.                     .+..     ....|...|..|.+.|+|||+
T Consensus         4 ~I~~GKEa~Vy~a~~~~g~~~avKi~r~~~~~Fk~~~~y~~~d~~~~~~~~~~~~~~~~wA~kEf~~L~rl~~~Gv~VP~   83 (187)
T cd05119           4 PIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVPK   83 (187)
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             75125571189999899999999997667343152777313204315788899999999999999999999985999980


Q ss_pred             CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             10010267787522451557864788707689989999999986436753068754332311245645766752001552
Q gi|254780795|r   82 PIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE  161 (316)
Q Consensus        82 pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~  161 (316)
                      |+.-.          +.+.+|+|+.|.....+.          |.+..       .                      ..
T Consensus        84 Pi~~~----------~~vlvMe~Ig~~~~~ap~----------L~~~~-------~----------------------~~  114 (187)
T cd05119          84 PIDLN----------RHVLVMEFIGGDGIPAPR----------LKDVR-------L----------------------LE  114 (187)
T ss_pred             EEEEE----------CCEEEEEEECCCCCCCCC----------HHHCC-------C----------------------CH
T ss_conf             79970----------987999981688977846----------53387-------5----------------------25


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             27889999999888765210777444022346422562796048731621356
Q gi|254780795|r  162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +......+.+..+.+. ..  ..|++||||...|||+.++++. ||||..+..
T Consensus       115 ~~~~~~~~il~~~~~~-~~--~~glVHgDLSeyNilv~~~~~~-iID~pQaV~  163 (187)
T cd05119         115 DPEELYDQILELMRKL-YR--EAGLVHGDLSEYNILVDDGKVY-IIDVPQAVE  163 (187)
T ss_pred             HHHHHHHHHHHHHHHH-HH--HCCCCCCCCCHHHEEEECCEEE-EEECCCEEC
T ss_conf             3999999999999999-99--7493103655554589899089-995572104


No 43 
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=98.89  E-value=6.7e-08  Score=70.74  Aligned_cols=134  Identities=23%  Similarity=0.306  Sum_probs=83.5

Q ss_pred             CCEEEEE-ECCCCCEEEEEEEEECCCC-EEEEEECCC-------------------CCHH-----HHHHHHHHHHHHHHC
Q ss_conf             8605310-0466812001799943995-899982166-------------------9988-----999999999998532
Q gi|254780795|r   22 GQLNSVQ-PIIHGVENSNFVIQTSKGT-FILTIYEKR-------------------MNEK-----DLPVFIELLHYISRN   75 (316)
Q Consensus        22 g~~~~~~-~i~~G~~Ntny~v~t~~~~-yiLri~e~~-------------------~~~~-----~l~~~~~ll~~L~~~   75 (316)
                      |-+.++. .|+.|=|-..|...+.+|. .++|+|+-.                   .+..     ....|...|..|.+.
T Consensus        14 g~i~~v~~~I~tGKEa~Vy~a~~~~g~~~avKi~r~~~~sFk~~k~~r~y~~~~~~~~~~~~~r~~A~kE~~nL~rl~~~   93 (198)
T cd05144          14 GVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE   93 (198)
T ss_pred             CCCHHHCCEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             87754097562262612899998999899999999585304131210022125553128999999999999999999984


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             67755510010267787522451557864788707689989999999986436753068754332311245645766752
Q gi|254780795|r   76 KLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKC  155 (316)
Q Consensus        76 gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~  155 (316)
                      |+|||+|+.-+.          -+.+|+|++|.+......                             ...        
T Consensus        94 Gv~VP~Pi~~~~----------~vlvMefI~g~~l~~~~~-----------------------------~~~--------  126 (198)
T cd05144          94 GFPVPKPIDWNR----------HAVVMEYIDGVELYRVRV-----------------------------LED--------  126 (198)
T ss_pred             CCCCCCEEEECC----------CEEEEEECCCCCCCCCCC-----------------------------CHH--------
T ss_conf             999998588518----------989997337811311544-----------------------------151--------


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCC
Q ss_conf             00155227889999999888765210777444022346422562-796048731621356
Q gi|254780795|r  156 FDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCN  214 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~  214 (316)
                             ......+.+..+.... +   .|++||||..-|||++ ++++. ||||..+..
T Consensus       127 -------~~~~y~~ii~~~~~l~-~---~glVHgDLSEyNIL~~~~~~~~-iID~~QaV~  174 (198)
T cd05144         127 -------PEEVLDEILEEIVKAY-K---HGIIHGDLSEFNILVDDDEKIY-IIDWPQMVS  174 (198)
T ss_pred             -------HHHHHHHHHHHHHHHH-H---CCCCCCCCCHHHEEECCCCCEE-EEECCCCCC
T ss_conf             -------9999999999999998-6---6943257436652554799899-996665015


No 44 
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=98.81  E-value=8e-08  Score=70.25  Aligned_cols=133  Identities=21%  Similarity=0.312  Sum_probs=77.7

Q ss_pred             CCCCCEEEEEEEEECCCC-EEEEEECCCC---------------------C--H-----HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             466812001799943995-8999821669---------------------9--8-----899999999999853267755
Q gi|254780795|r   30 IIHGVENSNFVIQTSKGT-FILTIYEKRM---------------------N--E-----KDLPVFIELLHYISRNKLPCP   80 (316)
Q Consensus        30 i~~G~~Ntny~v~t~~~~-yiLri~e~~~---------------------~--~-----~~l~~~~~ll~~L~~~gipvP   80 (316)
                      |+.|=|-..|...+.+|. .+||+|+-..                     .  .     .....|...|..|.+.|+|||
T Consensus         5 Ig~GKEa~Vy~a~~~~g~~~alKi~r~~~~sFk~~~~Y~~gd~r~~~~~~~~~~r~~~~~wA~kEf~~L~rl~~~Gv~VP   84 (190)
T cd05147           5 ISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIPCP   84 (190)
T ss_pred             CCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             30462604899998999899999957670110466776437665642555669889999999999999999998599999


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             51001026778752245155786478870768998999999998643675306875433231124564576675200155
Q gi|254780795|r   81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD  160 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~  160 (316)
                      +|+.-          ++.+.+|+|+.+.....+.             |.    +...      ..               
T Consensus        85 ~Pi~~----------~rhvlvMe~Ig~~g~pap~-------------L~----d~~~------~~---------------  116 (190)
T cd05147          85 EPILL----------KSHVLVMEFIGDDGWAAPR-------------LK----DAPL------SE---------------  116 (190)
T ss_pred             CEEEE----------CCCEEEEEEECCCCCCCCC-------------CC----CCCC------CH---------------
T ss_conf             84685----------2989999985589951320-------------14----5889------87---------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             227889999999888765210777444022346422562796048731621356
Q gi|254780795|r  161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +...+...+.+..+.....+   .++|||||..-|||+.+++++ ||||..+..
T Consensus       117 ~~~~~~~~~il~~~~~ly~~---~~lVHGDLSEyNIl~~~~~~~-iID~pQaV~  166 (190)
T cd05147         117 SKARELYLQVIQIMRILYQD---CRLVHADLSEYNLLYHDGKLY-IIDVSQSVE  166 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEECCCCEE-EEECCCCCC
T ss_conf             99999999999999999997---493224531542052489989-996664114


No 45 
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=98.81  E-value=6.9e-08  Score=70.65  Aligned_cols=133  Identities=22%  Similarity=0.337  Sum_probs=77.8

Q ss_pred             CCCCCEEEEEEEEECCCC-EEEEEECC--------------------C---CCHHH-----HHHHHHHHHHHHHCCCCCC
Q ss_conf             466812001799943995-89998216--------------------6---99889-----9999999999853267755
Q gi|254780795|r   30 IIHGVENSNFVIQTSKGT-FILTIYEK--------------------R---MNEKD-----LPVFIELLHYISRNKLPCP   80 (316)
Q Consensus        30 i~~G~~Ntny~v~t~~~~-yiLri~e~--------------------~---~~~~~-----l~~~~~ll~~L~~~gipvP   80 (316)
                      |+.|=|-..|...+.+|. .++|+|.-                    +   .+...     ...|...|..|.+.|+|||
T Consensus         5 I~~GKEs~Vy~a~~~~g~~~alKi~r~~~~sFk~~~~Y~~gd~r~~~~~~~~~~r~~~~~wA~kEf~~L~~l~~~Gv~VP   84 (190)
T cd05145           5 ISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVPVP   84 (190)
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             10351502899998999889999977264333144451057722405647669889999999999999999998599999


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             51001026778752245155786478870768998999999998643675306875433231124564576675200155
Q gi|254780795|r   81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD  160 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~  160 (316)
                      +|+.-.          +.+.+|+|+.+.....|.          |...       .+.      .               
T Consensus        85 ~Pi~~~----------rhvlvMefIg~~g~pap~----------L~d~-------~~~------~---------------  116 (190)
T cd05145          85 EPILLK----------KNVLVMEFIGDDGSPAPR----------LKDV-------PLE------E---------------  116 (190)
T ss_pred             CEEEEC----------CCEEEEEEECCCCCCCCC----------HHHC-------CCC------H---------------
T ss_conf             568862----------989999986589842430----------3205-------677------3---------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             227889999999888765210777444022346422562796048731621356
Q gi|254780795|r  161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .+......+.+..+.+.. .  ..|++||||...|||+++++++ ||||..+..
T Consensus       117 ~~~~~~~~~il~~~~~l~-~--~~glVHgDLSEyNILv~~~~~~-iID~pQaV~  166 (190)
T cd05145         117 EEAEELYEQVVEQMRRLY-Q--EAGLVHGDLSEYNILYHDGKPY-IIDVSQAVE  166 (190)
T ss_pred             HHHHHHHHHHHHHHHHHH-H--HCCEEECCCCHHHEEEECCCEE-EEECCCCCC
T ss_conf             509999999999999999-9--7492103641553389789479-995576125


No 46 
>pfam06293 Kdo Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica.
Probab=98.78  E-value=1.4e-07  Score=68.71  Aligned_cols=165  Identities=18%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             EEEEEEECCCCEEEEEEC-C----C---------CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             017999439958999821-6----6---------9988999999999998532677555100102677875224515578
Q gi|254780795|r   37 SNFVIQTSKGTFILTIYE-K----R---------MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        37 tny~v~t~~~~yiLri~e-~----~---------~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|++......++++.|. +    +         ....-.-.|..++..|.+.|||||+|+.-..-.. . ..-+.+.|.
T Consensus        19 ~~~f~~~~~~~~~lr~y~rgg~~~~i~k~~~~~~~~~~ra~rE~~~L~~L~~~Gipvp~pva~~~~~~-~-~~~~a~LIT   96 (206)
T pfam06293        19 TTWFVVARKDNGALRHYYRGGMWGKLNRDRYRFPLGRTRSFREFRLLRRLREAGVPVPKPVAAGAVKV-G-GEYQADLLT   96 (206)
T ss_pred             EEEEEEECCCCEEEEEEEECCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECC-C-CCEEEEEEH
T ss_conf             18999966865244468877706466000134748886999999999999985999887668999836-8-717998864


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +.|+|..          .+...+++.....                        +.....+...+...+..+.       
T Consensus        97 e~l~~~~----------~L~~~l~~~~~~~------------------------~~~~~~l~~~vg~~i~~~H-------  135 (206)
T pfam06293        97 ERLEGAQ----------DLVTWLAQWADPA------------------------EELRRALWRAVGRLIARMH-------  135 (206)
T ss_pred             HHCCCCH----------HHHHHHHHCCCCC------------------------HHHHHHHHHHHHHHHHHHH-------
T ss_conf             1356842----------0999986134445------------------------3678999999999999999-------


Q ss_pred             CCCEEECCCCCCCEEECCC----CCEEEECCCCCCCC-----HHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             7744402234642256279----60487316213568-----000198999986431168887878899999887
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNN----KIMGLIDFYFSCND-----FLMYDLSICINAWCFDENNTYNPSRGFSILNGY  248 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~----~i~giIDF~~~~~~-----~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY  248 (316)
                      ..|+.|+||++.||+++.+    ++ .+||||-|..-     +..-||+-..-+.   .+-.+...-+..|++||
T Consensus       136 ~~gi~H~DL~~~nIll~~~~~~~~~-~LIDldr~~~r~~~~~~~~~dL~rL~rS~---~~~~~~~~dw~~~l~~Y  206 (206)
T pfam06293       136 RAGVNHTDLNAHNILLDTGEGGFKV-WLIDFDKCRRRLRGDRWREKDLARLKRSF---LSIGLTEADWARLLSAY  206 (206)
T ss_pred             HCCCCCCCCCCEEEEEECCCCCCEE-EEEECCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHC
T ss_conf             8768458999000898179987539-99987667056887138898799999765---00899999999999639


No 47 
>smart00090 RIO RIO-like kinase.
Probab=98.77  E-value=1.9e-07  Score=67.86  Aligned_cols=156  Identities=21%  Similarity=0.279  Sum_probs=90.6

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEE-ECCCCCEEEEEEEE--ECCC-CEEEEEECC----------------C-----C
Q ss_conf             57708999999999848998605310-04668120017999--4399-589998216----------------6-----9
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAIGQLNSVQ-PIIHGVENSNFVIQ--TSKG-TFILTIYEK----------------R-----M   57 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~lg~~~~~~-~i~~G~~Ntny~v~--t~~~-~yiLri~e~----------------~-----~   57 (316)
                      ||...+.-.|..+.++-   -+.++. .|+.|=|-..|...  +.+| ..++|+|.-                |     .
T Consensus        11 v~d~~t~laL~~L~~rg---~i~~l~~~I~~GKEa~Vy~a~~~~~~g~~vavKi~r~~~~~Fk~~~~y~~gd~Rf~~~~~   87 (237)
T smart00090       11 VLDGRTRLALYSLLNRG---ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKI   87 (237)
T ss_pred             HCCHHHHHHHHHHHHCC---CCHHHCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             35886899999999779---765539754024170379998447999889999977475230537663365410256888


Q ss_pred             CHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             988-----999999999998532677555100102677875224515578647887076899899999999864367530
Q gi|254780795|r   58 NEK-----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT  132 (316)
Q Consensus        58 ~~~-----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~  132 (316)
                      +.-     ....|...|..|.+.|+|||+|+.-.          +.+.+|+|+.|.....+...                
T Consensus        88 ~~~~~~~~wA~kEf~nL~rl~~aGv~VP~Pi~~~----------~nvlvMefIg~~~~pap~L~----------------  141 (237)
T smart00090       88 NPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAWR----------RNVLVMEFIGGDGLPAPRLK----------------  141 (237)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE----------CCEEEEEEECCCCCCCCCHH----------------
T ss_conf             9889999999999999999998599999848964----------89899997468897454321----------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEECCCCCCCEEECCCCCEEEECCCC
Q ss_conf             68754332311245645766752001552278899999998887652107774-44022346422562796048731621
Q gi|254780795|r  133 KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG-IIHADLFPDNVLFYNNKIMGLIDFYF  211 (316)
Q Consensus       133 ~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g-~IHgDl~~~NiL~~~~~i~giIDF~~  211 (316)
                       +.+.      ..               .+......+.+..+.+..    ..| ++||||..-|||+.++++. ||||..
T Consensus       142 -d~~~------~~---------------~~~~~~~~~il~~~~~~y----~~g~lVHgDLSEyNIL~~~~~~~-iID~~Q  194 (237)
T smart00090      142 -DVEP------EE---------------EEEFELYDDILEEMRKLY----KEGELVHGDLSEYNILVHDGKVV-IIDVSQ  194 (237)
T ss_pred             -CCCC------CH---------------HHHHHHHHHHHHHHHHHH----HHCCEEECCHHHHHHEEECCCEE-EEECCC
T ss_conf             -1688------85---------------779999999999999999----82795203604655142089679-994675


Q ss_pred             CCC
Q ss_conf             356
Q gi|254780795|r  212 SCN  214 (316)
Q Consensus       212 ~~~  214 (316)
                      +..
T Consensus       195 aV~  197 (237)
T smart00090      195 SVE  197 (237)
T ss_pred             CCC
T ss_conf             236


No 48 
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=98.73  E-value=4.2e-07  Score=65.57  Aligned_cols=100  Identities=22%  Similarity=0.346  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99999999985326775551001026778752245155786478870768998999999998643675306875433231
Q gi|254780795|r   63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNT  142 (316)
Q Consensus        63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~  142 (316)
                      ..|...|..|.+.|+|||+|+.-.          +.+.+|+|+.+.....+..          .       +..+     
T Consensus        74 ~kEf~nL~rl~~~Gv~vP~Pi~~~----------~~vlvMe~ig~~g~pap~L----------~-------d~~~-----  121 (197)
T cd05146          74 EKEMHNLKRMQKAGIPCPEVVVLK----------KHVLVMSFIGDDQVPAPKL----------K-------DAKL-----  121 (197)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEC----------CCEEEEEEECCCCCCCCCH----------H-------CCCC-----
T ss_conf             999999999998599999846752----------9889999836999707431----------0-------1678-----


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             124564576675200155227889999999888765210777444022346422562796048731621356
Q gi|254780795|r  143 LSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                       ...               +......+.+..+.... .  ..|++||||..-|+|+.+++++ ||||..+..
T Consensus       122 -~~~---------------~~~~~~~~~i~~i~~l~-~--~~gLVHgDlSEyNil~~~~~~~-iID~~QaV~  173 (197)
T cd05146         122 -NDE---------------EMKNAYYQVLSMMKQLY-K--ECNLVHADLSEYNMLWHDGKVW-FIDVSQSVE  173 (197)
T ss_pred             -CHH---------------HHHHHHHHHHHHHHHHH-H--HCCCEECCCCHHHEEECCCCEE-EEECCCCCC
T ss_conf             -848---------------89999999999999999-9--8395012410330164279879-996774015


No 49 
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=98.73  E-value=4.2e-07  Score=65.61  Aligned_cols=157  Identities=18%  Similarity=0.292  Sum_probs=92.3

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEEE-CCCCCEEEEEEEEECCCC-EEEEEECCC---------------------CCH
Q ss_conf             577089999999998489986053100-466812001799943995-899982166---------------------998
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAIGQLNSVQP-IIHGVENSNFVIQTSKGT-FILTIYEKR---------------------MNE   59 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~lg~~~~~~~-i~~G~~Ntny~v~t~~~~-yiLri~e~~---------------------~~~   59 (316)
                      |+...|.+.|..+.+.   |.+..+.| |+.|=+-..|+-.+.++. +.+|||...                     .+.
T Consensus        31 v~D~~t~~~l~~L~~r---g~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~r  107 (268)
T COG1718          31 VFDKRTLETLRRLLSR---GVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNR  107 (268)
T ss_pred             HHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHCCHHHHCCCCCH
T ss_conf             5116899999998628---8601367620377414778731578753799997500355646888773264653478889


Q ss_pred             HHH-----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             899-----999999999853267755510010267787522451557864788707689989999999986436753068
Q gi|254780795|r   60 KDL-----PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN  134 (316)
Q Consensus        60 ~~l-----~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~  134 (316)
                      ..+     ..|..-|..+.+.|++||+|+.-.+|          +.+|+||...-...|.                 +++
T Consensus       108 r~lv~~W~~kEf~NL~R~~eAGVrvP~Pi~~~~n----------VLvMEfIg~~g~pAP~-----------------LkD  160 (268)
T COG1718         108 RKLVFAWARKEFRNLKRAYEAGVRVPEPIAFRNN----------VLVMEFIGDDGLPAPR-----------------LKD  160 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC----------EEEEEECCCCCCCCCC-----------------CCC
T ss_conf             9999999999999999999759999986100377----------5899831677887987-----------------334


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             75433231124564576675200155227889999999888765210777444022346422562796048731621356
Q gi|254780795|r  135 FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       135 f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .+..      ..               +........++.+... .+  ..+++||||-..|||+.++... ||||..|..
T Consensus       161 v~~e------~~---------------e~~~~~~~~v~~~~~l-~~--~a~LVHgDLSEyNiL~~~~~p~-iID~~QaV~  215 (268)
T COG1718         161 VPLE------LE---------------EAEGLYEDVVEYMRRL-YK--EAGLVHGDLSEYNILVHDGEPY-IIDVSQAVT  215 (268)
T ss_pred             CCCC------CH---------------HHHHHHHHHHHHHHHH-HH--HCCCCCCCCHHHEEEEECCEEE-EEECCCCCC
T ss_conf             7877------15---------------5899999999999999-98--6294113532350677799079-998832214


No 50 
>KOG3087 consensus
Probab=98.64  E-value=1.4e-06  Score=62.19  Aligned_cols=162  Identities=25%  Similarity=0.257  Sum_probs=94.1

Q ss_pred             EEEECCCCCEEEEEEEEECCCCEEEEE-ECCCCCHHHHH---------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             310046681200179994399589998-21669988999---------99999999853267755510010267787522
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSKGTFILTI-YEKRMNEKDLP---------VFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~~~yiLri-~e~~~~~~~l~---------~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
                      ++..+..|.|-+.+...-+...+|+|- |.++..-..|+         .|..++..+..-||+||..+..-        .
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D--------~   82 (229)
T KOG3087          11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFID--------T   82 (229)
T ss_pred             CCEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--------C
T ss_conf             50466436534675300377346775046423466688889988888999999888998288875489872--------6


Q ss_pred             CCCEEEEECCCCCCCC---------CC-----CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             4515578647887076---------89-----989999999986436753068754332311245645766752001552
Q gi|254780795|r   96 KKPANIFSFIKGSPLN---------HI-----SDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE  161 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~---------~~-----~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~  161 (316)
                      ++-...|+|++|.+..         ..     ..+.++.+|+.+|+||.                               
T Consensus        83 ~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~-------------------------------  131 (229)
T KOG3087          83 YGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD-------------------------------  131 (229)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_conf             7986899951540479999999706754226689999999999987632-------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC--CCCCE-EEECCCCCCCCHHHCCHHHHH----HH-HHHCCC
Q ss_conf             27889999999888765210777444022346422562--79604-873162135680001989999----86-431168
Q gi|254780795|r  162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY--NNKIM-GLIDFYFSCNDFLMYDLSICI----NA-WCFDEN  233 (316)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~--~~~i~-giIDF~~~~~~~~i~DLAi~i----~~-~c~~~~  233 (316)
                                            .++||||+..+|++..  ++++. =+|||+-+..+-..-|=||-+    -+ .|..+.
T Consensus       132 ----------------------ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~~~EDKgVDLYVlErA~lsTh~~  189 (229)
T KOG3087         132 ----------------------NDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSRLPEDKGVDLYVLERAVLSTHDK  189 (229)
T ss_pred             ----------------------CCEECCCCCCCCEEEECCCCCCCEEEEEECCHHCCCCCCCCCCEEEEEHHHHHCCCCC
T ss_conf             ----------------------7811255451316883698867548886041002357523563123246767315765


Q ss_pred             CCCCHHHHHHHHHHHHHC
Q ss_conf             887878899999887641
Q gi|254780795|r  234 NTYNPSRGFSILNGYNKV  251 (316)
Q Consensus       234 ~~~d~~~~~~~l~gY~~v  251 (316)
                         -+..+..|++||.+-
T Consensus       190 ---~~~~fe~~~~~Y~~~  204 (229)
T KOG3087         190 ---KALLFEGFLEGYRAS  204 (229)
T ss_pred             ---CHHHHHHHHHHHHHC
T ss_conf             ---088999999999850


No 51 
>pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined.
Probab=98.56  E-value=3.4e-07  Score=66.23  Aligned_cols=97  Identities=24%  Similarity=0.399  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999999985326775551001026778752245155786478--8707689989999999986436753068754332
Q gi|254780795|r   63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK--GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRK  140 (316)
Q Consensus        63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~--G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~  140 (316)
                      ..|...|..|.+.|+|||+|+.-.          +-+.+|+|+.  |.+.               -+|.    +.+.   
T Consensus        54 ~kEf~nL~rl~~~Gv~VP~Pi~~~----------r~vlvMe~Ig~~g~pa---------------p~Lk----d~~~---  101 (186)
T pfam01163        54 EKEFRNLKRLYEAGVPVPKPIAVN----------RHVLVMEFIGDDGVPA---------------PRLK----DVEL---  101 (186)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEE----------CCEEEEEEECCCCCCC---------------CCCC----CCCC---
T ss_conf             999999999998499999858962----------9899999856899335---------------5010----0786---


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             31124564576675200155227889999999888765210777444022346422562796048731621356
Q gi|254780795|r  141 NTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                                         +.+......+.+..+.....   ..|++||||...|||+.++++. ||||..+..
T Consensus       102 -------------------~~~~~~~~~~ii~~~~~~y~---~~glVHgDLSEyNIL~~~~~~~-iID~~QaV~  152 (186)
T pfam01163       102 -------------------EEEAEEIYDEIIREMRRLYQ---EAGLVHGDLSEYNVLVDDDKPV-IIDVPQAVE  152 (186)
T ss_pred             -------------------CHHHHHHHHHHHHHHHHHHH---HCCCEECCCHHHHEEEECCCEE-EEECCCCCC
T ss_conf             -------------------45399999999999999999---6693213620655064389679-995675225


No 52 
>pfam06176 WaaY Lipopolysaccharide core biosynthesis protein (WaaY). This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system.
Probab=98.54  E-value=2.1e-06  Score=61.02  Aligned_cols=163  Identities=14%  Similarity=0.274  Sum_probs=89.6

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHH--HH------HHHHHHHH--
Q ss_conf             657708999999999848998605310046681200179994399589998216699889--99------99999999--
Q gi|254780795|r    2 AVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKD--LP------VFIELLHY--   71 (316)
Q Consensus         2 aVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~--l~------~~~~ll~~--   71 (316)
                      .||+.=+..+...++..|==+++..++-.++-..|..-+|+|+.++||++.+.+.....+  +.      ++.+++..  
T Consensus        11 ~vy~ke~~~~y~~l~~~~l~~~~k~~kv~~~~~~~~V~lIe~~~~kyIlK~~~~~~~~~eR~~~s~ikg~~y~~li~~~~   90 (229)
T pfam06176        11 SVFYKDNDNKYKEIFNDFLSYNFKTIKVFRNIDDTKVSLIDTDYGKYVLKVFAPKVKRNERFLKSLVKGDYYENLIVQTD   90 (229)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             79965865039999999972650366742278752699999759558996675211128999999861489999999999


Q ss_pred             -HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             -8532677555100102677875224515578647887076899899999999864367530687543323112456457
Q gi|254780795|r   72 -ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF  150 (316)
Q Consensus        72 -L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~  150 (316)
                       +...|+.+..-..-.--..........+.|++|++|..+....                                    
T Consensus        91 ~~~~eG~~~~nd~yl~aekk~~r~~~~~i~l~EYIEG~~l~~~~------------------------------------  134 (229)
T pfam06176        91 RVRSEGLTSLNDFYLLAERKTLNYAHTYIMLIEYIEGVELNDMP------------------------------------  134 (229)
T ss_pred             HHHHCCCCCCCCEEEEEEHHHCCEEEEEEEEEEEECCCCCCCCC------------------------------------
T ss_conf             88761330003200131214256014566665322573246644------------------------------------


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHH
Q ss_conf             6675200155227889999999888765210777444022346422562796048731621356800
Q gi|254780795|r  151 LWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL  217 (316)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~  217 (316)
                             .++++....+.+.+..+.+       .|+.|||+|++|.+..++.+- |||-  +|.+..
T Consensus       135 -------dI~e~~~~~Ik~~I~~LH~-------~g~~sgD~h~gNFI~s~~~ir-IIDl--sgK~~~  184 (229)
T pfam06176       135 -------EISEDVKAKIKQSIESLHQ-------HGMVSGDPHRGNFIVSKDGVR-IIDL--SGKRCT  184 (229)
T ss_pred             -------CCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCHH
T ss_conf             -------4566679999999999997-------166358998765475089779-9988--885167


No 53 
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=98.53  E-value=1.7e-06  Score=61.65  Aligned_cols=128  Identities=21%  Similarity=0.293  Sum_probs=81.5

Q ss_pred             ECCCCCEEEEEEEEECCC-CEEEEEECC-------------------CCC-----HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             046681200179994399-589998216-------------------699-----8899999999999853267755510
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKG-TFILTIYEK-------------------RMN-----EKDLPVFIELLHYISRNKLPCPIPI   83 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~-------------------~~~-----~~~l~~~~~ll~~L~~~gipvP~pi   83 (316)
                      .|.-|=+-..|.+.+.+| +.++|+.+-                   +.+     ......|.+.|+.|...|++||+|+
T Consensus        98 ~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP~P~  177 (304)
T COG0478          98 KIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVPKPI  177 (304)
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             12567543179998899988899862057235654220065651356762224678989999999998403389899853


Q ss_pred             CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             01026778752245155786478870768998999999998643675306875433231124564576675200155227
Q gi|254780795|r   84 PRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL  163 (316)
Q Consensus        84 ~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~  163 (316)
                      .-          ++-+++|++++|..+.....                      .      .               .+.
T Consensus       178 ~~----------nRHaVvMe~ieG~eL~~~r~----------------------~------~---------------en~  204 (304)
T COG0478         178 AW----------NRHAVVMEYIEGVELYRLRL----------------------D------V---------------ENP  204 (304)
T ss_pred             CC----------CCCEEEEEHCCCCEEECCCC----------------------C------C---------------CCH
T ss_conf             44----------45243020105614002667----------------------6------3---------------178


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             88999999988876521077744402234642256279-6048731621356
Q gi|254780795|r  164 KKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       164 ~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                      ...+...+..+....    ..|++|||+..-||+++++ .+. +|||=.|..
T Consensus       205 ~~il~~il~~~~~~~----~~GiVHGDlSefNIlV~~dg~~~-vIDwPQ~v~  251 (304)
T COG0478         205 DEILDKILEEVRKAY----RRGIVHGDLSEFNILVTEDGDIV-VIDWPQAVP  251 (304)
T ss_pred             HHHHHHHHHHHHHHH----HCCCCCCCCCHHEEEEECCCCEE-EEECCCCCC
T ss_conf             999999999999999----72911147735418981699889-986766645


No 54 
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.44  E-value=7e-06  Score=57.70  Aligned_cols=161  Identities=15%  Similarity=0.256  Sum_probs=84.2

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHH--HHH------HHHHH---HHH
Q ss_conf             5770899999999984899860531004668120017999439958999821669988--999------99999---999
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK--DLP------VFIEL---LHY   71 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~--~l~------~~~~l---l~~   71 (316)
                      ||..=...+...+...|==++...++-.++--.|..-+|+++.++|||+.+.+.....  .+.      +...+   ++.
T Consensus        12 iy~~e~~~~y~el~~~~l~~~~k~~~v~k~~~~~~ValIei~~kkyIlK~~r~~~~~~eR~~~sf~kg~~~~~ll~~~~~   91 (232)
T PRK10359         12 VFYKDNDNKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDR   91 (232)
T ss_pred             EEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99627652499999999627615888523787526999997693799956740113589999999615799999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             85326775551001026778752245155786478870768998999999998643675306875433231124564576
Q gi|254780795|r   72 ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFL  151 (316)
Q Consensus        72 L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~  151 (316)
                      +.+.|+.+.....-.--..........+.|++|++|+.+....                                     
T Consensus        92 ~~~~g~~~~~d~yl~aekk~~~~i~~s~~l~EYIEG~~l~~~~-------------------------------------  134 (232)
T PRK10359         92 VRSEGLAFLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP-------------------------------------  134 (232)
T ss_pred             HHHCCCCCCCCHHEEEEHHHCCEEEEEEEEEEEECCCCCCCHH-------------------------------------
T ss_conf             8871523123411243413155222365564322584456444-------------------------------------


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCH
Q ss_conf             67520015522788999999988876521077744402234642256279604873162135680
Q gi|254780795|r  152 WAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF  216 (316)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~  216 (316)
                            .+++...+.+.+.+..+.+       .|..|||+|++|.+..++++. +||-  +|.+.
T Consensus       135 ------dI~~~~k~~I~~~I~kLH~-------~G~~sGD~h~gNFi~t~~glr-IIDl--sgKk~  183 (232)
T PRK10359        135 ------EISEDVKAKIKASIESLHQ-------HGMVSGDPHKGNFIVSKDGLR-IIDL--SGKRC  183 (232)
T ss_pred             ------HCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCH
T ss_conf             ------3266689999999999987-------476258988664798589579-9988--77305


No 55 
>KOG2270 consensus
Probab=98.35  E-value=6.3e-06  Score=57.97  Aligned_cols=143  Identities=20%  Similarity=0.309  Sum_probs=89.1

Q ss_pred             CCCCCEEEEEE-CCCCCEEEEEEEEECCCC-EEEEEEC-------C-----------------CCCHH----HHHHHHHH
Q ss_conf             89986053100-466812001799943995-8999821-------6-----------------69988----99999999
Q gi|254780795|r   19 YAIGQLNSVQP-IIHGVENSNFVIQTSKGT-FILTIYE-------K-----------------RMNEK----DLPVFIEL   68 (316)
Q Consensus        19 y~lg~~~~~~~-i~~G~~Ntny~v~t~~~~-yiLri~e-------~-----------------~~~~~----~l~~~~~l   68 (316)
                      -+-|.+.++.| |+.|-+--.|.++.++|+ |.++||.       .                 +....    ...-++.-
T Consensus       140 l~RG~i~~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RN  219 (520)
T KOG2270         140 LNRGVIVEINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRN  219 (520)
T ss_pred             HHCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             84570440254230475330576306798667899876447887131120255023323543578188999999999988


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             99985326775551001026778752245155786478870768998999999998643675306875433231124564
Q gi|254780795|r   69 LHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNL  148 (316)
Q Consensus        69 l~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~  148 (316)
                      |..|++.|||||.||.-++.          +.||+||.+.....|-                 +++.++.      ....
T Consensus       220 LkRl~~aGIP~PePIlLk~h----------VLVM~FlGrdgw~aPk-----------------LKd~~ls------~~ka  266 (520)
T KOG2270         220 LKRLNNAGIPCPEPILLKNH----------VLVMEFLGRDGWAAPK-----------------LKDASLS------TSKA  266 (520)
T ss_pred             HHHHHHCCCCCCCCEEEECC----------EEEEEECCCCCCCCCC-----------------CCCCCCC------HHHH
T ss_conf             99998369999984345153----------6766301578876733-----------------0256678------5778


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             57667520015522788999999988876521077744402234642256279604873162135
Q gi|254780795|r  149 KFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .                .+-..+-......++.  ..++|+||---|+|+.++++. |||-..+.
T Consensus       267 ~----------------~~Y~~~v~~MR~lY~~--c~LVHADLSEfN~LyhdG~ly-iIDVSQSV  312 (520)
T KOG2270         267 R----------------ELYQQCVRIMRRLYQK--CRLVHADLSEFNLLYHDGKLY-IIDVSQSV  312 (520)
T ss_pred             H----------------HHHHHHHHHHHHHHHH--HCEECCCHHHHHHEEECCEEE-EEECCCCC
T ss_conf             9----------------9999999999999987--550015565531137778799-99764334


No 56 
>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.33  E-value=1.7e-05  Score=55.23  Aligned_cols=155  Identities=16%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH-HH---HHHH
Q ss_conf             8998999999998643675306875433---23112456457667520----015522788999999988-87---6521
Q gi|254780795|r  112 HISDIHCEEIGSMLASMHQKTKNFHLYR---KNTLSPLNLKFLWAKCF----DKVDEDLKKEIDHEFCFL-KE---SWPK  180 (316)
Q Consensus       112 ~~~~~~~~~lG~~La~lH~~~~~f~~~r---~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~-~~---~~~~  180 (316)
                      .+++.++.++|+.+|++|+.+..-+...   ...--...+...+....    ...+....+.+....+.+ ++   ..-.
T Consensus       123 ~lt~~~l~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~~s~~~~d~i~~~t~~f~e~~~~lf~~  202 (337)
T COG2187         123 KLTESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIVQSKQQIDRIEHMTEEFLERHGPLFDR  202 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99879999999999999604887852002687777875787559987410375468899999999999999862089998


Q ss_pred             CCCCC---EEECCCCCCCEEECCCCCEEEE---CCCCC-CCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             07774---4402234642256279604873---16213-56800019899998643116888787889999988764188
Q gi|254780795|r  181 NLPTG---IIHADLFPDNVLFYNNKIMGLI---DFYFS-CNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRK  253 (316)
Q Consensus       181 ~Lp~g---~IHgDl~~~NiL~~~~~i~giI---DF~~~-~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrp  253 (316)
                      ....|   =||||+|.+||.+-++++. ++   -|.+- .+...+||+|-.+-++  +..|  -++.+..|+++|.....
T Consensus       203 R~~~g~IRecHGDLhl~ni~l~dg~~~-LFDCIEFNd~fr~iDv~~D~AFl~MDL--e~~g--r~dla~~~ln~Yl~~tg  277 (337)
T COG2187         203 RIAEGFIRECHGDLHLRNICLWDGEPA-LFDCIEFNDPFRFIDVLYDLAFLAMDL--EFRG--RKDLARRFLNTYLEETG  277 (337)
T ss_pred             HHHCCCCEECCCCHHHCCEEEECCCCE-EEEEEECCCCCHHHHHHHHHHHHHHHH--HHCC--CHHHHHHHHHHHHHHHC
T ss_conf             886597121544010055556548615-887752178512788999999997107--6438--86799999999998708


Q ss_pred             CCHHHHHHHHHHH-HHHHHH
Q ss_conf             9989999999999-999999
Q gi|254780795|r  254 ISENELQSLPTLL-RGAALR  272 (316)
Q Consensus       254 Ls~~E~~~l~~ll-~~aalR  272 (316)
                       ...-..+||.++ +.|++|
T Consensus       278 -D~~gl~lLpfyla~rA~VR  296 (337)
T COG2187         278 -DWDGLELLPFYLAYRAYVR  296 (337)
T ss_pred             -CCCHHHHHHHHHHHHHHHH
T ss_conf             -9307777289999999998


No 57 
>TIGR01767 MTRK 5-methylthioribose kinase; InterPro: IPR009212   Members of this family are 5-methylthioribose kinases (2.7.1.100 from EC) that catalyse phosphorylation of 5-methylthioribose (MTR), a step in the recycling of methionine from 5'-methylthioadenosine, a co-product of polyamine biosynthesis. The preceding step of methylthioadenosine (MTA) hydrolysis to MTR is catalysed by 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/AdoHcy) nucleosidase (PIRSF006618 from PIRSF).   Bacillus subtilis MtnK (formerly YkrT) and Klebsiella pneumoniae MtrK  have been experimentally characterised. Klebsiella pneumoniae MtrK expression is regulated by methionine .   As this enzyme is absent in mammals, it has been considered a target for rational drug design.; GO: 0046522 S-methyl-5-thioribose kinase activity, 0009086 methionine biosynthetic process.
Probab=98.17  E-value=5.3e-06  Score=58.49  Aligned_cols=187  Identities=17%  Similarity=0.208  Sum_probs=100.8

Q ss_pred             ECCCCCEEEEEEEEECCCC--EEEEE-------E-CCCCCHHHHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CC
Q ss_conf             0466812001799943995--89998-------2-1669988999-9999999985326775551001026778752-24
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKGT--FILTI-------Y-EKRMNEKDLP-VFIELLHYISRNKLPCPIPIPRNDGKLYGFL-CK   96 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~~--yiLri-------~-e~~~~~~~l~-~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~-~~   96 (316)
                      .|..|--|-.|.|.-.+|.  -|+|=       . |+-.  --|+ ..++. +-|-.++=.+|.-++.     +..+ .+
T Consensus         2 EvGDGNLNlVF~v~d~~g~~~aivKQAlPYvr~VGeSWP--LtldRar~E~-~aL~rq~~h~P~~vp~-----i~hfD~e   73 (386)
T TIGR01767         2 EVGDGNLNLVFKVYDREGARAAIVKQALPYVRVVGESWP--LTLDRARLEA-SALVRQEEHAPQLVPK-----IYHFDEE   73 (386)
T ss_pred             CCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEECCCCC--CHHHHHHHHH-HHHHHHHHCCCCCCCE-----EEEECCC
T ss_conf             546445321678875788602001114770477527688--6267899989-9988643037887333-----7861686


Q ss_pred             CCEEEEECCCC-CCC------C-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH--------HHHH---------HH
Q ss_conf             51557864788-707------6-8998999999998643675306875433231124--------5645---------76
Q gi|254780795|r   97 KPANIFSFIKG-SPL------N-HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSP--------LNLK---------FL  151 (316)
Q Consensus        97 k~~~L~~~i~G-~~~------~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~--------~~~~---------~~  151 (316)
                      ..+.||+++.- ..+      . ..-|...+++|..||+.==-+.+|.+..+.....        .-+.         ++
T Consensus        74 ~Av~vMEdLs~Ph~I~R~~LI~g~~yP~~ar~iG~fla~tLF~~SD~~l~pk~kKa~va~F~nnpelCdITE~LvF~DPy  153 (386)
T TIGR01767        74 LAVIVMEDLSDPHKILRKELIEGEQYPQLARDIGEFLAKTLFRSSDYALEPKEKKADVAQFINNPELCDITEDLVFSDPY  153 (386)
T ss_pred             CEEEHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             30102023161578998776324311389999989988886202553217547788998631783344454530048851


Q ss_pred             HHHHHHCCCHHHHHHH---------HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHH
Q ss_conf             6752001552278899---------9999988876521077744402234642256279604873162135680001989
Q gi|254780795|r  152 WAKCFDKVDEDLKKEI---------DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLS  222 (316)
Q Consensus       152 ~~~~~~~~~~~~~~~l---------~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLA  222 (316)
                      +..-.+...+++...+         +-+.+.+++....+ -..++|||+|.+-|++.+.+.. +||=|++-|||..||++
T Consensus       154 fdh~~N~~~~eL~~~Va~Lr~d~~lK~eaa~LK~~F~a~-AEtLlHGDlHsGSIfv~e~etk-~IDpEFafyGPigFDiG  231 (386)
T TIGR01767       154 FDHERNDYEEELEAVVAELRDDADLKVEAAKLKHSFLAS-AETLLHGDLHSGSIFVAETETK-VIDPEFAFYGPIGFDIG  231 (386)
T ss_pred             CCHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHCCCEEEECCCEE-EECCCCCCCCCCHHHHH
T ss_conf             001126881434389998605951229999975787741-2577404210252435347301-11453113176077899


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780795|r  223 ICI  225 (316)
Q Consensus       223 i~i  225 (316)
                      .+|
T Consensus       232 ~~i  234 (386)
T TIGR01767       232 TLI  234 (386)
T ss_pred             HHH
T ss_conf             999


No 58 
>cd06614 STKc_PAK Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I 
Probab=98.15  E-value=6.6e-05  Score=51.37  Aligned_cols=154  Identities=16%  Similarity=0.256  Sum_probs=82.3

Q ss_pred             HHHHHHHHCCCC-CEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999999848998-605310046681200179994-399-5899982166--99889999999999985326775551001
Q gi|254780795|r   11 EIQSFVQEYAIG-QLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPR   85 (316)
Q Consensus        11 el~~il~~y~lg-~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~   85 (316)
                      +++.++.+=|.. ...-++.|..|.--+.|+..- .+| .|.+|+....  ...+.+..|+.+|..|..     |.+++-
T Consensus         7 ~~~~~~~~~d~~~~Y~i~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~l   81 (287)
T cd06614           7 ALKDIVSEGDPRELYDNLEKIGEGASGEVYTATDRATGKEVAIKKMRLRKQPKKELIINEILIMKECKH-----PNIVNY   81 (287)
T ss_pred             HHHHHCCCCCHHHCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCC-----CCCCCE
T ss_conf             999874799941565974798038685999999999998999999870674579999999999987799-----999919


Q ss_pred             CHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             02677875224515578647887076899899999999864367530687543323112456457667520015522788
Q gi|254780795|r   86 NDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKK  165 (316)
Q Consensus        86 ~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (316)
                      .+   .....+..+.+++|++|..+..           .+   .+....+        .....            .....
T Consensus        82 ~~---~~~~~~~~~ivmEy~~gG~L~~-----------~i---~~~~~~l--------~e~~~------------~~i~~  124 (287)
T cd06614          82 YD---SYLVGDELWVVMEYMDGGSLTD-----------II---TQTFVRM--------NESQI------------AYVCR  124 (287)
T ss_pred             EE---EEEECCEEEEEEECCCCCCHHH-----------HH---HHCCCCC--------CHHHH------------HHHHH
T ss_conf             99---9998999999996888992899-----------99---8668998--------99999------------99999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             999999988876521077744402234642256279604873162135
Q gi|254780795|r  166 EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       166 ~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+...+..+.+       +++||.|+.|.|||++.+...-|+||+.|.
T Consensus       125 qil~aL~ylH~-------~~IiHRDiKp~NILl~~~g~vKl~DFGla~  165 (287)
T cd06614         125 EVLQGLEYLHS-------QNVIHRDIKSDNILLSKDGSVKLADFGFAA  165 (287)
T ss_pred             HHHHHHHHHHH-------CCEECCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             99999999998-------894402176798789899999996177755


No 59 
>cd06654 STKc_PAK1 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulati
Probab=98.11  E-value=0.00023  Score=47.90  Aligned_cols=154  Identities=16%  Similarity=0.249  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHC-CCCCE----EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999848-99860----5310046681200179994-399-5899982166--99889999999999985326775
Q gi|254780795|r    9 QKEIQSFVQEY-AIGQL----NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPC   79 (316)
Q Consensus         9 ~~el~~il~~y-~lg~~----~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipv   79 (316)
                      .+|+-.=|+.| .+|.+    .-++.|..|.--+.|+... .+| .+.+|.....  ...+.+..|+.+|..+..     
T Consensus         2 ~~~~~~~~~~~~~~gdp~~~Y~~~~~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----   76 (296)
T cd06654           2 DEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN-----   76 (296)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCC-----
T ss_conf             589999998434999977041888897038683999999889998999999843227538999999999987799-----


Q ss_pred             CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             55100102677875224515578647887076899899999999864367530687543323112456457667520015
Q gi|254780795|r   80 PIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKV  159 (316)
Q Consensus        80 P~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~  159 (316)
                      |.+++-.+   ....+++.+.+++|++|..+..           .+.+     ..++        ....           
T Consensus        77 pnIv~l~~---~~~~~~~~~ivmE~~~gg~L~~-----------~l~~-----~~l~--------e~~~-----------  118 (296)
T cd06654          77 PNIVNYLD---SYLVGDELWVVMEYLAGGSLTD-----------VVTE-----TCMD--------EGQI-----------  118 (296)
T ss_pred             CCCCEEEE---EEEECCEEEEEEECCCCCCHHH-----------HHHH-----CCCC--------HHHH-----------
T ss_conf             99890999---9998999999996289994799-----------9871-----6999--------9999-----------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             522788999999988876521077744402234642256279-6048731621356
Q gi|254780795|r  160 DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       160 ~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                       ......+...+..+.+       +++||.|+.|.|||++.+ .+. ++||+.|..
T Consensus       119 -~~i~~qil~aL~ylH~-------~~IiHRDiKp~NILl~~~g~vK-l~DFGla~~  165 (296)
T cd06654         119 -AAVCRECLQALEFLHS-------NQVIHRDIKSDNILLGMDGSVK-LTDFGFCAQ  165 (296)
T ss_pred             -HHHHHHHHHHHHHHHH-------CCCEECCCCCHHEEECCCCCEE-EEECCCCEE
T ss_conf             -9999999999999987-------8965021780545898999999-995788856


No 60 
>KOG2268 consensus
Probab=98.07  E-value=8.1e-06  Score=57.26  Aligned_cols=123  Identities=20%  Similarity=0.383  Sum_probs=72.7

Q ss_pred             CCEEEEEEEEECCC-CEEEEEEC-------C----------CCCHH-------HHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             81200179994399-58999821-------6----------69988-------999999999998532677555100102
Q gi|254780795|r   33 GVENSNFVIQTSKG-TFILTIYE-------K----------RMNEK-------DLPVFIELLHYISRNKLPCPIPIPRND   87 (316)
Q Consensus        33 G~~Ntny~v~t~~~-~yiLri~e-------~----------~~~~~-------~l~~~~~ll~~L~~~gipvP~pi~~~~   87 (316)
                      |-+-.-|.|.-.+| .++||+.+       +          |-+..       ....+...|..|.++|+|||+||-.  
T Consensus       103 GKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfpVPkpiD~--  180 (465)
T KOG2268         103 GKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFPVPKPIDH--  180 (465)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--
T ss_conf             554524897667778056778764214677765402667617862013467777778999999998759999975456--


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             67787522451557864788707689989999999986436753068754332311245645766752001552278899
Q gi|254780795|r   88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI  167 (316)
Q Consensus        88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  167 (316)
                              +|-++||+.++|-++...               |..              ..               .....
T Consensus       181 --------~RH~Vvmelv~g~Pl~~v---------------~~v--------------~d---------------~~~ly  208 (465)
T KOG2268         181 --------NRHCVVMELVDGYPLRQV---------------RHV--------------ED---------------PPTLY  208 (465)
T ss_pred             --------CCEEEHHHHHCCCCEEEE---------------EEC--------------CC---------------HHHHH
T ss_conf             --------531218876445530001---------------114--------------78---------------68999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             999998887652107774440223464225627-96048731621356
Q gi|254780795|r  168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      ...+..+.+.+    ..|+||||++--|+++.+ ++++ +|||-.|..
T Consensus       209 ~~lm~~Iv~la----~~GlIHgDFNEFNimv~dd~~i~-vIDFPQmvS  251 (465)
T KOG2268         209 DDLMGLIVRLA----NHGLIHGDFNEFNIMVKDDDKIV-VIDFPQMVS  251 (465)
T ss_pred             HHHHHHHHHHH----HCCCEECCCCHHEEEEECCCCEE-EEECHHHHC
T ss_conf             99999999998----75933225305416871489779-963457504


No 61 
>cd07836 STKc_Pho85 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 subfamily. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the
Probab=98.04  E-value=0.00017  Score=48.79  Aligned_cols=138  Identities=16%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             10046681200179994-3995-899982166---998899999999999853267755510010267787522451557
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKR---MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~---~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      ++.|..|.--+.|.+.. .+|+ +.+|+....   ........|+++|..|..     |.+++-.+   +...++..+.+
T Consensus         5 i~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~l~~---~~~~~~~~~iv   76 (284)
T cd07836           5 LEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKH-----ENIVRLHD---VIHTESKLMLV   76 (284)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEE
T ss_conf             25961285839999998899989999998620023318999999999997799-----89892978---99569989999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.            +.+.+.+ +..-..+        ......            .....+...+..+.+     
T Consensus        77 ~E~~~~~------------L~~~l~~-~~~~~~l--------~~~~i~------------~~~~Qil~aL~ylH~-----  118 (284)
T cd07836          77 FEYMEKD------------LKKYMDT-HGNRGAL--------DPNTVK------------SFTYQLLKGIAFCHE-----  118 (284)
T ss_pred             EECCCCC------------HHHHHHH-HCCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf             9858998------------8999997-2657899--------999999------------999999999999997-----


Q ss_pred             CCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             77744402234642256279-604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                        .|+||.|+.|.|||++.+ ++. ++||+.|.
T Consensus       119 --~gIiHRDlKP~NILl~~~~~vK-L~DFG~a~  148 (284)
T cd07836         119 --NRVLHRDLKPQNLLINKRGELK-LADFGLAR  148 (284)
T ss_pred             --CCEEEEECCCCEEEECCCCCEE-EEECCCHH
T ss_conf             --8915421561106998999889-97637313


No 62 
>cd06612 STKc_MST1_2 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activ
Probab=98.03  E-value=0.00017  Score=48.79  Aligned_cols=139  Identities=13%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             10046681200179994-399-5899982166998899999999999853267755510010267787522451557864
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      ++.|..|.--+.|++.. .+| .|.+|+........++..|+++|..+..     |.+++-.+   ...-++..+.+++|
T Consensus         8 ~~~IG~G~fg~V~~~~~~~~~~~~AiK~i~~~~~~~~~~~E~~il~~~~H-----pnIv~~~~---~~~~~~~~~lvmEy   79 (256)
T cd06612           8 LEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDS-----PYIVKYYG---SYFKNTDLWIVMEY   79 (256)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEEC
T ss_conf             15982076919999999899989999998654589999999999986799-----99980999---99989999999978


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..           .+   +...+.++        .....            .....+...+..+.+       +
T Consensus        80 ~~~g~L~~-----------~l---~~~~~~~~--------e~~v~------------~~~~qi~~al~ylH~-------~  118 (256)
T cd06612          80 CGAGSVSD-----------IM---KITNKTLT--------EEEIA------------AILYQTLKGLEYLHS-------N  118 (256)
T ss_pred             CCCCCHHH-----------HH---HHHCCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------C
T ss_conf             99993999-----------99---98489999--------99999------------999999999999998-------9


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             444022346422562796048731621356
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      ++||.|+.|+|||++++...-|.||+-|..
T Consensus       119 ~iiHRDlKp~NILl~~~~~~Ki~DFGls~~  148 (256)
T cd06612         119 KKIHRDIKAGNILLNEEGQAKLADFGVSGQ  148 (256)
T ss_pred             CEEEEECCHHHEEECCCCCEEEEECCCCEE
T ss_conf             936613588995588999999942768618


No 63 
>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase; InterPro: IPR012811   Three pathways exist for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium favours trehalose, physiological concentrations of trehalose may be much greater than that of maltose, and TreS may act largely in its degradation. This entry describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose..
Probab=98.02  E-value=3.2e-05  Score=53.37  Aligned_cols=189  Identities=21%  Similarity=0.250  Sum_probs=100.3

Q ss_pred             HHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CC-CCCCCCCC-----HH
Q ss_conf             9848998605310046681200179994399589998216699889999999999985326-77-55510010-----26
Q gi|254780795|r   16 VQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LP-CPIPIPRN-----DG   88 (316)
Q Consensus        16 l~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ip-vP~pi~~~-----~G   88 (316)
                      |..+.+++--.++-++.=-+||+-.|   ..++|||++++ +. ..+.-|+++-.||.+.| ++ ||..+=.-     ++
T Consensus       167 lA~~~~~~~~~~r~~~AEQSNSs~~~---g~~~VlKL~R~-~~-~G~~PE~Em~r~LT~~g~YaN~~pLLGsv~r~~~~~  241 (568)
T TIGR02457       167 LASLALKEDPEVRLLSAEQSNSSLVV---GDRVVLKLYRK-VE-PGINPEIEMGRYLTEAGEYANVAPLLGSVERVGGDQ  241 (568)
T ss_pred             HHCCCCCCCCCCCCHHCCCCCHHHHH---HHHHHHHHHHH-CC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
T ss_conf             00446678865311001444125665---54666645311-06-788805689999876116899760001677745887


Q ss_pred             H--HHHHHC------------------------------C-C---CEEEEECCCCCCCCCCCHH----------HHHHHH
Q ss_conf             7--787522------------------------------4-5---1557864788707689989----------999999
Q gi|254780795|r   89 K--LYGFLC------------------------------K-K---PANIFSFIKGSPLNHISDI----------HCEEIG  122 (316)
Q Consensus        89 ~--~~~~~~------------------------------~-k---~~~L~~~i~G~~~~~~~~~----------~~~~lG  122 (316)
                      .  .+..++                              | .   |-.+-+-++|..++-|.+.          ..-.+|
T Consensus       242 ~p~tl~~LQ~YV~NqGDaW~~t~~~L~R~~~~~~~~~~~~a~~~~ps~~sslmdG~~~~~PE~~~E~~~~~Y~~fag~~G  321 (568)
T TIGR02457       242 APHTLGILQGYVENQGDAWRWTLDYLKRYIEEQLSPSANEADAETPSELSSLMDGSASKLPELIAEQILAGYLEFAGLLG  321 (568)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             35789888754058761678899999999999987403667766777454323675556853455775122899999999


Q ss_pred             HHHHHHHHHCCC------CCCCCCCCCCHHHHH-----------HHHHHHHHCCCHHHHHH----------HHHHHHHHH
Q ss_conf             986436753068------754332311245645-----------76675200155227889----------999999888
Q gi|254780795|r  123 SMLASMHQKTKN------FHLYRKNTLSPLNLK-----------FLWAKCFDKVDEDLKKE----------IDHEFCFLK  175 (316)
Q Consensus       123 ~~La~lH~~~~~------f~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------l~~~l~~~~  175 (316)
                      +=||.||.++..      |.+.+-.......|-           ..+....+.+....+..          |.+.+..+.
T Consensus       322 ~RLAelH~aLA~~~~DaaF~P~p~~~~~~~~~~~~~~~q~~r~~~~La~~~~~l~~~~r~~a~~L~~~r~~L~~~l~~l~  401 (568)
T TIGR02457       322 RRLAELHLALAAATEDAAFAPEPISTADARSWVQDMKAQLERALELLAESRDGLEEAARALADKLLAQRKELAAHLRALV  401 (568)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999855899874568898888889999999999999999999987605826669999999999899999985531


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCC
Q ss_conf             765210777444022346422562796048731621
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYF  211 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~  211 (316)
                      +.....|.. =||||||-+-||+-++.+. |||||=
T Consensus       402 ~~~~d~l~i-R~HGDFhLGQvL~~~~D~~-lIDFEG  435 (568)
T TIGR02457       402 KREIDGLKI-RIHGDFHLGQVLVVQDDAV-LIDFEG  435 (568)
T ss_pred             HHHHCCCEE-EECCCCCCCEEEEECCCEE-EEECCC
T ss_conf             676195111-0003431441566608478-961488


No 64 
>cd07865 STKc_CDK9 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participa
Probab=98.01  E-value=0.0002  Score=48.23  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             CCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHH--HHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHH
Q ss_conf             98605310046681200179994-399-589998216--69988--99999999999853267-7555100102677875
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEK--DLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGF   93 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~--~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~   93 (316)
                      +++-.-++.|..|.--+.|++.. ..| .+.+|+...  .....  ..-.|+.+|+.|...++ +.-.++.+. ......
T Consensus        11 i~~Y~~~~~IG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H~niv~~~~~~~~~-~~~~~~   89 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTK-ATPYNR   89 (310)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC-CCCCCC
T ss_conf             4787776697337284999999999997999999841004326689999999999974799814068899733-645556


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             22451557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      ..+..+.+++|++|.-            +..+..   ....+        .....            ......+...+..
T Consensus        90 ~~~~~~lv~E~~~~~l------------~~~~~~---~~~~~--------~~~~i------------~~i~~Qil~aL~y  134 (310)
T cd07865          90 FKGSFYLVFEFCEHDL------------AGLLSN---KNVKF--------TLSEI------------KKVMKQLLNGLYY  134 (310)
T ss_pred             CCCEEEEEEECCCCCH------------HHHHHH---CCCCC--------CHHHH------------HHHHHHHHHHHHH
T ss_conf             6875999996689976------------888863---46898--------99999------------9999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+       .|+||.|+.|.|||++.+...-|+||+.|.
T Consensus       135 LH~-------~gIiHRDlKPeNILl~~~~~vKl~DFGla~  167 (310)
T cd07865         135 IHR-------NKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             HHH-------CCCCCCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             987-------877516787899688788988982166441


No 65 
>cd06658 STKc_PAK5 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is 
Probab=97.98  E-value=0.00037  Score=46.54  Aligned_cols=155  Identities=16%  Similarity=0.258  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHH-CCCCCE----EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             899999999984-899860----5310046681200179994-399-5899982166--998899999999999853267
Q gi|254780795|r    7 PPQKEIQSFVQE-YAIGQL----NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKL   77 (316)
Q Consensus         7 ls~~el~~il~~-y~lg~~----~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gi   77 (316)
                      +|.++..+.|+- -..|..    ..++.|..|.--+.|+..- .+| .|.+|+...+  ...+.+..|+.+|..|..   
T Consensus         2 ~~~~~~~~~~~~~~~~gd~~~~~~~l~~IG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H---   78 (292)
T cd06658           2 VSHEQFRAALQLVVSPGDPREYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHH---   78 (292)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC---
T ss_conf             87799999998354999948967407796227781999999899998999999851663239999999999986799---


Q ss_pred             CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             75551001026778752245155786478870768998999999998643675306875433231124564576675200
Q gi|254780795|r   78 PCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD  157 (316)
Q Consensus        78 pvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~  157 (316)
                        |.+++-.+   ....++..+.+++|++|..+..        +   +.  +   ..++        ....         
T Consensus        79 --pnIV~l~~---~~~~~~~~yiVmE~~~gG~L~~--------~---i~--~---~~l~--------e~~~---------  120 (292)
T cd06658          79 --ENVVDMYN---SYLVGDELWVVMEFLEGGALTD--------I---VT--H---TRMN--------EEQI---------  120 (292)
T ss_pred             --CCCCEEEE---EEEECCEEEEEEECCCCCCHHH--------H---HH--C---CCCC--------HHHH---------
T ss_conf             --89891999---9998999999998989991778--------9---87--2---8999--------9999---------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             1552278899999998887652107774440223464225627-9604873162135
Q gi|254780795|r  158 KVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       158 ~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                         ......+...++.+.+       +|+||.|+.|.|||++. +++. ++||+.|.
T Consensus       121 ---~~i~~qil~aL~yLH~-------~~IiHRDlKpeNILl~~~g~iK-L~DFGla~  166 (292)
T cd06658         121 ---ATVCLSVLRALSYLHN-------QGVIHRDIKSDSILLTSDGRIK-LSDFGFCA  166 (292)
T ss_pred             ---HHHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCEE-EEECCCCE
T ss_conf             ---9999999999999997-------8935363771536786899899-97262755


No 66 
>cd07861 STKc_CDK1_euk The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 
Probab=97.98  E-value=0.00013  Score=49.51  Aligned_cols=139  Identities=18%  Similarity=0.235  Sum_probs=75.8

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             10046681200179994-399-589998216699----889999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|+... .+| .+.+|+......    ...+..|+.+|..|..     |.+++..+   ...-.++.+.
T Consensus         5 l~~lG~G~fg~V~~~~~~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~l   76 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQH-----PNIVCLQD---VLMQESRLYL   76 (285)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE
T ss_conf             079012879199999988999899999980012344679999999999987799-----99804724---5701997999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.            +++.+..+.+   .      .........            .....+...+..+.+    
T Consensus        77 V~Ey~~~~------------l~~~l~~~~~---~------~~l~~~~i~------------~~~~ql~~aL~ylH~----  119 (285)
T cd07861          77 VFEFLSMD------------LKKYLDSLPK---G------QYMDSMLVK------------SYLYQILQGILFCHS----  119 (285)
T ss_pred             EEECCCCC------------HHHHHHHHCC---C------CCCCHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             99726887------------7999987425---8------989999999------------999999999999997----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .|+||.|+.|+|||++.+...-++||+.|.
T Consensus       120 ---~~IiHRDiKP~NIlld~~~~vKl~DFG~a~  149 (285)
T cd07861         120 ---RRVLHRDLKPQNLLIDNKGVIKLADFGLAR  149 (285)
T ss_pred             ---CCCEECCCCCHHEEECCCCCEEEEECCHHH
T ss_conf             ---993647278211688899988980075277


No 67 
>cd06655 STKc_PAK2 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptoti
Probab=97.96  E-value=0.00029  Score=47.22  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=78.0

Q ss_pred             EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             05310046681200179994-399-589998216--69988999999999998532677555100102677875224515
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ..-++.|..|.--+.|+... ..| .|.+|+...  ....+.+..|+.+|..|..     |.+++-.+   ....++..+
T Consensus        21 Y~~~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~   92 (296)
T cd06655          21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKN-----PNIVNFLD---SFLVGDELF   92 (296)
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEE
T ss_conf             3962798038680999999889998999999862008538999999999996799-----89991999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++..           .+.+     ..++        ....            ......+...+..+.+   
T Consensus        93 ivmEy~~gg~L~~-----------~i~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~---  133 (296)
T cd06655          93 VVMEYLAGGSLTD-----------VVTE-----TCMD--------EAQI------------AAVCRECLQALEFLHA---  133 (296)
T ss_pred             EEEECCCCCCHHH-----------HHHH-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9996589992899-----------9870-----6999--------9999------------9999999999999998---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             107774440223464225627-96048731621356
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                          +|+||.|+.|.|||++. +.+. ++||+.|..
T Consensus       134 ----~~IiHRDlKp~NILl~~~g~vK-l~DFGla~~  164 (296)
T cd06655         134 ----NQVIHRDIKSDNVLLGMDGSVK-LTDFGFCAQ  164 (296)
T ss_pred             ----CCCCCCCCCHHHEEECCCCCEE-EECCCCCEE
T ss_conf             ----8874477976877888999999-981888777


No 68 
>cd06656 STKc_PAK3 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the b
Probab=97.96  E-value=0.00067  Score=44.87  Aligned_cols=138  Identities=15%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             05310046681200179994-399-589998216--69988999999999998532677555100102677875224515
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ..-++.|..|.--+.|+... .+| .+.+|+...  ....+.+..|+.+|..+..     |.+++-.+   ....++..+
T Consensus        21 Y~~~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~---~~~~~~~~~   92 (297)
T cd06656          21 YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKN-----PNIVNYLD---SYLVGDELW   92 (297)
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             1887897048581999999889998999999873327628999999999986799-----99890999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..           .+.+     ..++        ....            ......+...+..+.+   
T Consensus        93 iVmEy~~gg~L~~-----------~l~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~---  133 (297)
T cd06656          93 VVMEYLAGGSLTD-----------VVTE-----TCMD--------EGQI------------AAVCRECLQALDFLHS---  133 (297)
T ss_pred             EEEECCCCCCHHH-----------HHHC-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9995589992899-----------8751-----6999--------9999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             1077744402234642256279-604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||++.+ .+. ++||+.|.
T Consensus       134 ----~~IiHRDlKP~NILl~~~g~vK-L~DFGla~  163 (297)
T cd06656         134 ----NQVIHRDIKSDNILLGMDGSVK-LTDFGFCA  163 (297)
T ss_pred             ----CCCCCCCCCHHHEEECCCCCEE-EECCCCCE
T ss_conf             ----8955041881646898999999-98588885


No 69 
>cd07846 STKc_CDKL2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, a
Probab=97.96  E-value=0.00018  Score=48.53  Aligned_cols=137  Identities=15%  Similarity=0.202  Sum_probs=74.6

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             100466812001799943-995-89998216699889----999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEKD----LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~~----l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|+..-. +|+ +.+|++.+......    .-.|+.+|..|..     |.+++..+   +....+..+.
T Consensus         6 ~~~iG~G~fg~Vy~~~~~~t~~~vAiK~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~i   77 (286)
T cd07846           6 LGLVGEGSYGMVMKCRHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRH-----ENLVNLIE---VFRRKKRLYL   77 (286)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEE
T ss_conf             318833708799999988999899999982101567889999999999986799-----79991999---9998998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|...               ..+.+...+++        .....            .....+...+..+.+    
T Consensus        78 v~E~~~~~~l---------------~~l~~~~~~l~--------~~~i~------------~i~~qil~al~ylH~----  118 (286)
T cd07846          78 VFEFVDHTVL---------------DDLEKYPNGLD--------ESRVR------------KYLFQVLRGIEFCHS----  118 (286)
T ss_pred             EEECCCCCCH---------------HHHHHCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             9958998829---------------99986269989--------99999------------999999999999997----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .|+||.|+.|.|||++.+...-++||+.|.
T Consensus       119 ---~~iiHRDlKpeNILl~~~~~iKl~DFGla~  148 (286)
T cd07846         119 ---HNIIHRDIKPENILVSQSGVVKLCDFGFAR  148 (286)
T ss_pred             ---CCCEECCCCHHHEEECCCCCEEEEECCCHH
T ss_conf             ---893526587899678889989983323034


No 70 
>cd06639 STKc_myosinIIIB Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a reg
Probab=97.95  E-value=0.00019  Score=48.47  Aligned_cols=159  Identities=13%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             89999999998489986053100466812001799943-99-5899982166-998899999999999853267755510
Q gi|254780795|r    7 PPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPI   83 (316)
Q Consensus         7 ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi   83 (316)
                      ++.+++.....+|.+     ++.|..|.--+.|++... +| .+.+|+..+. ...+++..|+++|+.|.++    |.++
T Consensus        12 ~~~~~~g~p~d~Y~i-----~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~~H----pnIv   82 (291)
T cd06639          12 LGLESLGDPTDTWEI-----IETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNH----PNVV   82 (291)
T ss_pred             EEHHHCCCCCCCEEE-----EEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC----CCEE
T ss_conf             649984997534799-----8898237582999999889998999999884005289999999999973179----9988


Q ss_pred             CCCHHHHH---HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             01026778---752245155786478870768998999999998643675306875433231124564576675200155
Q gi|254780795|r   84 PRNDGKLY---GFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD  160 (316)
Q Consensus        84 ~~~~G~~~---~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~  160 (316)
                      +-.+ -..   ....+..+.+++|++|.++..           .+..+......++        .....           
T Consensus        83 ~~~~-~~~~~~~~~~~~l~ivmE~~~gg~L~~-----------~i~~~~~~~~~l~--------e~~~~-----------  131 (291)
T cd06639          83 KFYG-MFYKADKLVGGQLWLVLELCNGGSVTE-----------LVKGLLICGQRLD--------EAMIS-----------  131 (291)
T ss_pred             EEEE-EEEECCCCCCCEEEEEEECCCCCCHHH-----------HHHHHHHCCCCCC--------HHHHH-----------
T ss_conf             9999-999547567871899997689996999-----------9998776079999--------99999-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             22788999999988876521077744402234642256279-6048731621356
Q gi|254780795|r  161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                       .....+...+..+.+       +++||.|+.|.|||++.+ .+ -++||+.|..
T Consensus       132 -~i~~qi~~aL~ylH~-------~~IiHRDlKP~NILl~~~g~v-Kl~DFGls~~  177 (291)
T cd06639         132 -YILYGALLGLQHLHN-------NRIIHRDVKGNNILLTTEGGV-KLVDFGVSAQ  177 (291)
T ss_pred             -HHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCE-EEECCCEEEE
T ss_conf             -999999999999987-------893402377477788689988-9822612257


No 71 
>cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a
Probab=97.95  E-value=0.00036  Score=46.61  Aligned_cols=137  Identities=15%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             EEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             310046681200179994-3995-899982166--998899999999999853267755510010267787522451557
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      .+..|..|.--+.|+... .+|+ |.+|+...+  ...+.+..|+++|..|...+     +++-.+   .....+..+.+
T Consensus        24 ~~~kIG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-----Iv~l~~---~~~~~~~~ylv   95 (292)
T cd06657          24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-----VVEMYN---SYLVGDELWVV   95 (292)
T ss_pred             CCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCCEEE---EEEECCEEEEE
T ss_conf             2869622888199999988999899999983056403899999999998679989-----982989---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|..+..           .+.  +   ..++        .....            .....+...++.+.+     
T Consensus        96 mEy~~gG~L~~-----------~~~--~---~~l~--------e~~i~------------~i~~qil~aL~yLH~-----  134 (292)
T cd06657          96 MEFLEGGALTD-----------IVT--H---TRMN--------EEQIA------------AVCLAVLKALSVLHA-----  134 (292)
T ss_pred             EECCCCCCHHH-----------HHH--H---CCCC--------HHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf             96769787999-----------998--1---8999--------99999------------999999999999997-----


Q ss_pred             CCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             77744402234642256279-6048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                        +|+||.|+.|.|||++.+ ++. ++||+.|..
T Consensus       135 --~~IiHRDiKpeNILl~~~g~iK-L~DFGla~~  165 (292)
T cd06657         135 --QGVIHRDIKSDSILLTHDGRVK-LSDFGFCAQ  165 (292)
T ss_pred             --CCCEEEECCCHHEEECCCCCEE-EEEEEEEEE
T ss_conf             --8945322671306785899889-996021366


No 72 
>cd07847 STKc_CDKL1_4 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformatio
Probab=97.95  E-value=0.00021  Score=48.18  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=73.7

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCC-HH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             100466812001799943-995-89998216699-88---9999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMN-EK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~-~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|.+.-. +|+ +.+|.+..+.. ..   ....|+.+|..|..     |.+++-.+   ....++..+.
T Consensus         6 ~~~lG~G~fg~V~~~~~~~t~~~vAiK~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~---~~~~~~~~~l   77 (286)
T cd07847           6 LGKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKH-----PNLVNLIE---VFRRKRRLHL   77 (286)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE
T ss_conf             428413608599999988999899999974002487899999999999987799-----79893999---9956998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|....        .+   ..  +  ..+++        ...    .        ......+...+..+.+    
T Consensus        78 VmE~~~~~~l~--------~l---~~--~--~~~l~--------e~~----~--------~~i~~qll~al~ylH~----  118 (286)
T cd07847          78 VFEYCDHTVLN--------EL---EK--N--PRGVP--------EHQ----I--------KKIIWQTLQAVNFCHK----  118 (286)
T ss_pred             EEECCCCCCHH--------HH---HH--C--CCCCC--------HHH----H--------HHHHHHHHHHHHHHHH----
T ss_conf             99658998499--------99---97--3--79989--------999----9--------9999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       119 ---~~iiHRDlKpeNILl~~~~~iKl~DFG~a~  148 (286)
T cd07847         119 ---HNCIHRDVKPENILITKQGQIKLCDFGFAR  148 (286)
T ss_pred             ---CCCCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             ---887426455111038789949996412530


No 73 
>cd06648 STKc_PAK_II Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since g
Probab=97.95  E-value=0.00019  Score=48.47  Aligned_cols=137  Identities=16%  Similarity=0.277  Sum_probs=77.1

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             5310046681200179994-399-5899982166--99889999999999985326775551001026778752245155
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ..++.|..|.--+.|+..- .+| .|.+|+...+  ...+.+..|+.+|..|..     |.+++-.+   ....++..+.
T Consensus        22 ~~l~~IG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~~~~---~~~~~~~~~i   93 (285)
T cd06648          22 DNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQH-----PNIVEMYS---SYLVGDELWV   93 (285)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE
T ss_conf             788996237691999999889998999999841110139999999999986899-----99982999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++..           .+.+     ..++        ....            ......+...+..+.+    
T Consensus        94 vmE~~~gg~L~~-----------~i~~-----~~l~--------e~~~------------~~i~~qil~aL~yLH~----  133 (285)
T cd06648          94 VMEFLEGGALTD-----------IVTH-----TRMN--------EEQI------------ATVCLAVLKALSFLHA----  133 (285)
T ss_pred             EEECCCCCCHHH-----------HHHC-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             996899991799-----------9873-----8999--------9999------------9999999999999997----


Q ss_pred             CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             077744402234642256279-604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++.+ .+ -++||+.|.
T Consensus       134 ---~~IiHRDlKpeNILl~~~g~v-Kl~DFGla~  163 (285)
T cd06648         134 ---QGVIHRDIKSDSILLTSDGRV-KLSDFGFCA  163 (285)
T ss_pred             ---CCCEECCCCCHHEEECCCCCE-EEEECCCCE
T ss_conf             ---893525477132688799988-999543203


No 74 
>cd06636 STKc_MAP4K4_6 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal e
Probab=97.92  E-value=0.00033  Score=46.85  Aligned_cols=149  Identities=18%  Similarity=0.219  Sum_probs=79.1

Q ss_pred             CCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH----HH
Q ss_conf             98605310046681200179994-399-5899982166-99889999999999985326775551001026778----75
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY----GF   93 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~----~~   93 (316)
                      .|...-++.|..|.--+.|+..- .+| .+.+|+.+.. ...+++..++++|..+..+.    .++.- -+..+    ..
T Consensus        15 ~~~Y~~~~~IG~G~fg~Vy~a~~~~tg~~~AiK~i~~~~~~~~~~~~E~~~l~~~~~h~----niv~~-~~~~~~~~~~~   89 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHR----NIATY-YGAFIKKSPPG   89 (282)
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC----CEEEE-EEEEEEECCCC
T ss_conf             88848888983285829999999899979999998144061999999999999634898----18889-66899704678


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             22451557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      .++..+.+++|++|..+..     +      +   +.. ++      +........            .....+...+..
T Consensus        90 ~~~~l~lvmE~~~~g~L~~-----~------l---~~~-~~------~~~~e~~i~------------~~~~qi~~aL~y  136 (282)
T cd06636          90 HDDQLWLVMEFCGAGSVTD-----L------V---KNT-KG------NALKEDWIA------------YICREILRGLAH  136 (282)
T ss_pred             CCCEEEEEEECCCCCCHHH-----H------H---HHH-CC------CCCCHHHHH------------HHHHHHHHHHHH
T ss_conf             7888999996899997999-----9------9---872-48------999999999------------999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             88765210777444022346422562796048731621356
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +..       .++||.|+.|.|||++++...-|+||+.|..
T Consensus       137 lH~-------~~IiHRDlKp~NILl~~~~~iKi~DFGls~~  170 (282)
T cd06636         137 LHA-------HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  170 (282)
T ss_pred             HHH-------CCCEEEECCHHHEEECCCCCEEEEECCCCEE
T ss_conf             997-------8916623565777887999899975778747


No 75 
>cd00180 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail.
Probab=97.90  E-value=0.00032  Score=46.98  Aligned_cols=137  Identities=19%  Similarity=0.279  Sum_probs=74.9

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             0046681200179994-399-5899982166-9988---99999999999853267755510010267787522451557
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.|..|.--+.|+..- .+| .+.+|+.... .+..   .+..|+++|..|..     |.+++-.+   ...-.+..+.+
T Consensus         6 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~iv   77 (256)
T cd00180           6 EKLGKGAFGKVYLARDKKTGELVAIKIIKKKKEKKKQVERILREIKILKRLNH-----PNIVKLYD---VFEDEDKLYLV   77 (256)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE
T ss_conf             89841878499999998999899999983344898999999999999997799-----69995999---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++...           +   +.. ..++        ....            ......+...+..+.+     
T Consensus        78 mEy~~gg~L~~~-----------i---~~~-~~l~--------~~~~------------~~i~~qi~~aL~ylH~-----  117 (256)
T cd00180          78 MEYMSGGDLFDL-----------L---KKR-GRLS--------EDEA------------RFYFRQILSGLEYLHS-----  117 (256)
T ss_pred             EECCCCCCHHHH-----------H---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-----
T ss_conf             978899868999-----------9---876-9999--------9999------------9999999999999998-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             777444022346422562796048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                        +|+||.|+.|.|||++++...-++||+.|..
T Consensus       118 --~~iiHRDiKp~NILl~~~~~vKL~DFGla~~  148 (256)
T cd00180         118 --KGIIHRDLKPENILLDEDGHVKIADFGLAKQ  148 (256)
T ss_pred             --CCCEEEECCHHHEEECCCCCEEEEECCCCEE
T ss_conf             --9967744577987998999899997888657


No 76 
>cd07860 STKc_CDK2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A comp
Probab=97.87  E-value=0.00031  Score=47.03  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             100466812001799943-99-5899982166998----89999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|++... +| .|.+|+.......    ..+..|+.+|..|..     |.+++-.+   +..-.++.+.
T Consensus         5 l~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~yi   76 (284)
T cd07860           5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-----PNIVKLLD---VIHTENKLYL   76 (284)
T ss_pred             EEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EECCCCEEEE
T ss_conf             178523658499999988999899999981221333669999999999986799-----99814610---0444998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.      ..      +.+-...  ..+++        ....            ......+...++.+.+    
T Consensus        77 v~E~~~~~------L~------~~~~~~~--~~~~~--------~~~i------------~~~~~Qil~al~yLH~----  118 (284)
T cd07860          77 VFEFLHQD------LK------KFMDASP--LSGIP--------LPLI------------KSYLFQLLQGLAFCHS----  118 (284)
T ss_pred             EEECCCCC------HH------HHHHHCC--CCCCC--------HHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             99648987------89------9987525--68999--------9999------------9999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             07774440223464225627-9604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       119 ---~~IiHRDiKPeNILl~~~~~iK-l~DFGla~  148 (284)
T cd07860         119 ---HRVLHRDLKPQNLLINTEGAIK-LADFGLAR  148 (284)
T ss_pred             ---CCCEEEECCHHHEEECCCCCEE-EEECCCCC
T ss_conf             ---8936732675664688999899-94357522


No 77 
>cd07864 STKc_CDK12 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. C
Probab=97.86  E-value=0.00068  Score=44.83  Aligned_cols=145  Identities=12%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCC-CCCCCCCCHHHH-HHHHCCCC
Q ss_conf             100466812001799943-995-8999821669988----999999999998532677-555100102677-87522451
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLP-CPIPIPRNDGKL-YGFLCKKP   98 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~-~~~~~~k~   98 (316)
                      ++.|..|.--+.|+.... .|+ |.+|+.......+    ..-.|+++|..|...++- +=..+.+.+... +..-.+..
T Consensus        12 ~~~lG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~~~~   91 (302)
T cd07864          12 IGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAVREIKILRQLNHRSIVNLKEIVTDKQDALDFKKDKGAF   91 (302)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf             78985263819999998899979999999501022244899999999999706888330467883055432200368759


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|...               +.+......++        ....            ......+...+..+.+  
T Consensus        92 ~iv~E~~~~~l~---------------~~l~~~~~~~~--------e~~~------------~~~~~Qil~gL~yLH~--  134 (302)
T cd07864          92 YLVFEYMDHDLM---------------GLLESGLVHFS--------EDHI------------KSFMKQLLEGLNYCHK--  134 (302)
T ss_pred             EEEEECCCCCHH---------------HHHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             999979999669---------------99984678989--------9999------------9999999999999986--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +|+||.|+.|.|||++.+...-|+||+.|.
T Consensus       135 -----~giiHRDlKPeNILi~~~~~vKl~DFG~a~  164 (302)
T cd07864         135 -----KNFLHRDIKCSNILLNNKGQIKLADFGLAR  164 (302)
T ss_pred             -----CCCEECCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             -----994604587698699899988997568751


No 78 
>cd07839 STKc_CDK5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiatio
Probab=97.83  E-value=0.00084  Score=44.22  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=73.3

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             10046681200179994-3995-899982166998----89999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|++.- ++|+ +.+|+.......    .....|+.+|..|..     |.+++..+   .....+..+.
T Consensus         5 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~i   76 (284)
T cd07839           5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-----KNIVRLYD---VLHSDKKLTL   76 (284)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EECCCCEEEE
T ss_conf             048204728399999988999799999983034646779999999999986799-----99720211---2500997999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.-      ..      .+.+.    .+       ........            .....+...+..+.+    
T Consensus        77 vmE~~~~~l------~~------~~~~~----~~-------~~~~~~~~------------~~~~qil~gl~ylH~----  117 (284)
T cd07839          77 VFEYCDQDL------KK------YFDSC----NG-------DIDPEIVK------------SFMFQLLKGLAFCHS----  117 (284)
T ss_pred             EEECCCCCH------HH------HHHHH----CC-------CCCHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             996079778------99------99972----79-------99999999------------999999999999986----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++++...-++||+.|.
T Consensus       118 ---~~IiHRDiKpeNILl~~~~~vKL~DFGla~  147 (284)
T cd07839         118 ---HNVLHRDLKPQNLLINKNGELKLADFGLAR  147 (284)
T ss_pred             ---CCCCCCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf             ---985712177302688899999995517663


No 79 
>cd06609 STKc_MST3_like Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins req
Probab=97.83  E-value=0.00056  Score=45.38  Aligned_cols=135  Identities=18%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             0046681200179994-399-58999821669988---999999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|..|.--+.|+... .+| .|.+|+.......+   .+..|+.+|..|..     |.+++-.+   ...-++..+.++
T Consensus         7 ~~iG~G~fg~Vy~a~~~~t~~~vAvK~i~~~~~~~~~~~~~~Ei~~l~~l~h-----pnIv~~~~---~~~~~~~~~ivm   78 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRS-----PYITKYYG---SFLKGSKLWIIM   78 (274)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEE
T ss_conf             7982176849999999899989999998167694899999999999986799-----89990999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+..           .+    +. ..++        ....            ......+...+..+.+      
T Consensus        79 Ey~~gg~L~~-----------~l----~~-~~~~--------e~~~------------~~~~~qi~~aL~ylH~------  116 (274)
T cd06609          79 EYCGGGSCLD-----------LL----KP-GKLD--------ETYI------------AFILREVLLGLEYLHE------  116 (274)
T ss_pred             ECCCCCCHHH-----------HH----HC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             7889797999-----------99----70-8999--------9999------------9999999999999986------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +|+||.|+.|.|||++++...-+.||+.|.
T Consensus       117 -~~iiHRDlKp~NILl~~~g~vKl~DFG~a~  146 (274)
T cd06609         117 -EGKIHRDIKAANILLSEEGDVKLADFGVSG  146 (274)
T ss_pred             -CCEEEEECCHHHEEECCCCCEEEEECCCCE
T ss_conf             -997887746688367789998994578864


No 80 
>cd06643 STKc_SLK Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=97.82  E-value=0.0008  Score=44.35  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             00466812001799943-99-58999821669988999---999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|..|.--+.|+.... .| .+.+|+...+ ..+++.   .|+++|..|..     |.+++-.+   ....++..+.++
T Consensus        11 ~~iG~G~fg~Vy~a~~~~~~~~~AvK~~~~~-~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~lvm   81 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTK-SEEELEDYMVEIDILASCDH-----PNIVKLLD---AFYYENNLWILI   81 (282)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEE
T ss_conf             5980276839999998899949999997724-88999999999999986799-----89992999---999899899999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+..              .+++....++        .....            .....+...+..+.+      
T Consensus        82 E~~~gg~L~~--------------~l~~~~~~l~--------e~~~~------------~i~~qi~~gl~ylH~------  121 (282)
T cd06643          82 EFCAGGAVDA--------------VMLELERPLT--------EPQIR------------VVCKQTLEALNYLHE------  121 (282)
T ss_pred             EECCCCCHHH--------------HHHHCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH------
T ss_conf             9379994899--------------9987079999--------99999------------999999999999997------


Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             774440223464225627-96048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                       +++||.|+.|+|||++. +.+. +.||+.|..
T Consensus       122 -~~iiHRDIKp~NILl~~~g~vK-l~DFGls~~  152 (282)
T cd06643         122 -NKIIHRDLKAGNILFTLDGDIK-LADFGVSAK  152 (282)
T ss_pred             -CCEEEEECCHHHEEECCCCCEE-EEECCCCEE
T ss_conf             -8976633666877887999999-960747730


No 81 
>cd05610 STKc_MASTL STKc_MASTL: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknow
Probab=97.82  E-value=0.00032  Score=46.92  Aligned_cols=144  Identities=21%  Similarity=0.294  Sum_probs=77.2

Q ss_pred             CCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             98605310046681200179994-3995-899982166--9988---999999999998532677555100102677875
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~   93 (316)
                      |++..-++.|..|.--+.|++.- ..|+ |.+|+..+.  .+..   .+..|.++|..+.     .|.+++-.+   ..+
T Consensus         3 I~df~ilk~IG~G~fG~Vyla~~~~~g~~~AiK~l~~~~~~~~~~~~~~~~E~~~l~~~~-----hp~Iv~l~~---~~~   74 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSK-----SPFIVHLYY---SLQ   74 (669)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEE
T ss_conf             012799889641758199999989999899999982788249899999999999998669-----986795999---999


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             22451557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      -.+..+.+|+|++|..+..           .+   +.. ..++        .....            .....+...+..
T Consensus        75 ~~~~~ylvmEy~~gg~L~~-----------~l---~~~-~~~~--------e~~~~------------~~~~qi~~aL~~  119 (669)
T cd05610          75 SANNVYLVMEYLIGGDVKS-----------LL---HIY-GYFD--------EEMAV------------KYISEVALALDY  119 (669)
T ss_pred             ECCEEEEEEECCCCCCHHH-----------HH---HHH-CCCC--------HHHHH------------HHHHHHHHHHHH
T ss_conf             8999999982789982999-----------99---984-8999--------99999------------999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             88765210777444022346422562796048731621356
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +.+       .|+||.|+.|.|||++.+...-|.||+-+-.
T Consensus       120 lH~-------~gIiHRDiKp~NiLl~~~g~vKl~DFGlSk~  153 (669)
T cd05610         120 LHR-------HGIIHRDLKPDNMLISNEGHIKLTDFGLSKV  153 (669)
T ss_pred             HHH-------CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             997-------8876225780030077899789930474303


No 82 
>cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the 
Probab=97.81  E-value=0.00026  Score=47.53  Aligned_cols=136  Identities=21%  Similarity=0.296  Sum_probs=71.6

Q ss_pred             EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             0046681200179994----399-58999821669---9---88999999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +.|..|.--+.|++..    +.| .|.+|+..+..   .   .+.+..+.++|.+|..+    |.+++-.+   ..+-++
T Consensus         6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~~E~~il~~l~~~----p~Iv~l~~---~~~~~~   78 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS----PFLVTLHY---AFQTDT   78 (290)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC
T ss_conf             79513888399999985327889499999980788401067899999999999854899----96789999---999899


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      +.+.+++|++|..+..              .+.+. ..++        ....            ......+...+..+.+
T Consensus        79 ~~ylvmEy~~gg~L~~--------------~l~~~-~~l~--------e~~~------------~~~~~qil~al~ylH~  123 (290)
T cd05613          79 KLHLILDYINGGELFT--------------HLSQR-ERFK--------EQEV------------QIYSGEIVLALEHLHK  123 (290)
T ss_pred             EEEEEEECCCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH
T ss_conf             9999996779988899--------------99874-9999--------9999------------9999999999999998


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             6521077744402234642256279-604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                             +|+||.|+.|.|||++.+ .+. ++||+.|.
T Consensus       124 -------~~IiHRDiKpeNILl~~~g~ik-l~DFGls~  153 (290)
T cd05613         124 -------LGIIYRDIKLENILLDSNGHVV-LTDFGLSK  153 (290)
T ss_pred             -------CCCEECCCCHHHCCCCCCCCEE-ECCCCCCE
T ss_conf             -------8945323663654466899889-83276011


No 83 
>cd07829 STKc_CDK_like The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of 
Probab=97.80  E-value=0.00055  Score=45.41  Aligned_cols=137  Identities=19%  Similarity=0.262  Sum_probs=74.0

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             10046681200179994-399-58999821669988----9999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|++.- .+| .|.+|+.......+    ..-.|+++|..|+.     |.+++..+   .....+..+.
T Consensus         4 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~h-----~nIv~~~~---~~~~~~~~~i   75 (282)
T cd07829           4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKH-----PNIVKLLD---VIYTENKLYL   75 (282)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE
T ss_conf             899512769199999998999799999983211403668999999999997799-----99990888---9814998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++| .+        .   +.+.+   ....+        ......            .....+...+..+.+    
T Consensus        76 vmE~~~~-dL--------~---~~l~~---~~~~l--------~~~~~~------------~~~~Qi~~al~~LH~----  116 (282)
T cd07829          76 VFEYCEM-DL--------K---KYLDK---RPGPL--------SPNLIK------------SIMYQLLRGLAYCHS----  116 (282)
T ss_pred             EEECCHH-HH--------H---HHHHH---CCCCC--------CHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             9957135-78--------9---99983---48999--------999999------------999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +++||.|+.|.|||++++...-++||+.|.
T Consensus       117 ---~~IiHRDIKpeNILl~~~~~iKl~DFGla~  146 (282)
T cd07829         117 ---HRILHRDLKPQNLLINRDGVLKLADFGLAR  146 (282)
T ss_pred             ---CCEEEEECCHHHEEECCCCCEEECCCCCCE
T ss_conf             ---995663256676247799998986675533


No 84 
>cd06608 STKc_myosinIII_like Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of pho
Probab=97.79  E-value=0.0008  Score=44.35  Aligned_cols=147  Identities=17%  Similarity=0.230  Sum_probs=77.8

Q ss_pred             EEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH----HHHCC
Q ss_conf             053100466812001799943-99-5899982166-99889999999999985326775551001026778----75224
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY----GFLCK   96 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~----~~~~~   96 (316)
                      ..-.+-|..|.--+.|+..-. +| .+.+|+.... ....++..|+++|..|.++    |.+++-. |.++    ....+
T Consensus         8 Y~i~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~E~~il~~l~~H----pnIv~~~-~~~~~~~~~~~~~   82 (275)
T cd06608           8 FELVEVIGTGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIEEEYNILRKYSNH----PNIATFY-GAFIKKGPPGSDD   82 (275)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCCCEEE-EEEEECCCCCCCC
T ss_conf             2886897227383999999989998999998776611399999999999971289----9878598-9997358777688


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      +.+.+++|++|.++.           ..+.......+.++        .....            .....+...+..+.+
T Consensus        83 ~~yivmE~~~~G~L~-----------dl~~~~~~~~~~~~--------e~~i~------------~i~~qi~~al~yLH~  131 (275)
T cd06608          83 QLWLVMELCGGGSVT-----------DLVKGLRKKGKRLK--------EEWIA------------YILRETLRGLAYLHE  131 (275)
T ss_pred             EEEEEEECCCCCCHH-----------HHHHHHHHCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH
T ss_conf             799999658999299-----------99999987289999--------99999------------999999999999997


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             6521077744402234642256279604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                             +++||.|+.|.|||++++...-++||+.|.
T Consensus       132 -------~~IiHRDlKp~NILl~~~~~vKl~DFGls~  161 (275)
T cd06608         132 -------NKVIHRDIKGQNILLTKEGEVKLVDFGVSA  161 (275)
T ss_pred             -------CCEECCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             -------997605477799788799989998578874


No 85 
>pfam04655 APH_6_hur Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.
Probab=97.78  E-value=0.002  Score=41.77  Aligned_cols=218  Identities=14%  Similarity=0.046  Sum_probs=109.8

Q ss_pred             CCCCCEEEEEEEEECCC-CEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf             46681200179994399-58999821669-98899999999999853267755510010267787522451557864788
Q gi|254780795|r   30 IIHGVENSNFVIQTSKG-TFILTIYEKRM-NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG  107 (316)
Q Consensus        30 i~~G~~Ntny~v~t~~~-~yiLri~e~~~-~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G  107 (316)
                      ...|...-.+.|.+.+| .-|||+.-.+. ...+. .-..+|.+-...|.  .+.+... .       +.-+.|++++.|
T Consensus        10 ~~~g~~s~V~pV~~~dG~pAvLKl~~p~~~~~~E~-~g~~~L~~w~G~Ga--vrll~~d-~-------~~~AlLLErl~~   78 (253)
T pfam04655        10 VAATHSSLVLPVLRADGTPAVLKLAKPREEIEDER-RGALLLVWWDGRGA--VRLLARD-E-------EGGALLLERADG   78 (253)
T ss_pred             CCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHH-HHHHHHHHCCCCCE--EEEEEEC-C-------CCCHHHHHHCCC
T ss_conf             77776258999986899955888358976443568-88999875079871--7885147-8-------523699976069


Q ss_pred             -CCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -70768-----998999999998643675306875433231124-56457667520015522788999999988876521
Q gi|254780795|r  108 -SPLNH-----ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSP-LNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       108 -~~~~~-----~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                       .++..     ...+-+..++..+++||.....-.+  ...... .++..++........+.....+........+....
T Consensus        79 ~~~L~~~~~~~~d~eA~~i~~~l~~rL~~p~~~~~p--~~l~~l~~~~~~l~~~~~~~~~~~~~~l~~~aa~~~~~Ll~~  156 (253)
T pfam04655        79 ERSLASLVAEGDDDEATRILAGLLARLHSPRPGPLP--PELRPLEEWAASLFRRAAEAAGAGRARLYVDAAAAAAELLAE  156 (253)
T ss_pred             CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             997667303477589999999999997378887899--666479999999987525433763318999999999997258


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             077744402234642256279604873162135680001989999-8643116888787889999988764188998999
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI-NAWCFDENNTYNPSRGFSILNGYNKVRKISENEL  259 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i-~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~  259 (316)
                      .-...++|||+|.+|||-.+.+=-=.||= .-..|.+.||+|-.+ |-|.- ....-++.++..-++-....--+..+-.
T Consensus       157 ~~~~~lLHGDLHh~NVL~~~~~~WlAIDP-Kgl~Ge~~fd~a~~l~N~~~~-~~~~~~~~~~~~R~~~~~~~~gld~~Rl  234 (253)
T pfam04655       157 PGEQRPLHGDLHHENVLAGGRRGWLAIDP-KGLVGEPGFDLANLFYNPDDR-DDLALRPGRVRRRLDLLAEALGLDPERL  234 (253)
T ss_pred             CCCCEEECCCCCHHHHCCCCCCCCEEECC-CCCCCCHHHCHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             77433332556578660589997257788-766775102569987196522-2445658999999999999969899999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780795|r  260 QSL  262 (316)
Q Consensus       260 ~~l  262 (316)
                      -.|
T Consensus       235 ~~W  237 (253)
T pfam04655       235 LGW  237 (253)
T ss_pred             HHH
T ss_conf             999


No 86 
>cd07866 STKc_BUR1 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 subfamily. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen 
Probab=97.78  E-value=0.00056  Score=45.37  Aligned_cols=148  Identities=11%  Similarity=0.130  Sum_probs=73.9

Q ss_pred             CEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHC
Q ss_conf             605310046681200179994-399-58999821669988----99999999999853267-755510010267787522
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~~~   95 (316)
                      +..-++.|..|.--+.|++.. .++ .|.+|+...+...+    ....|+++|..|+..++ +.-...... +.......
T Consensus         9 ~Y~i~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H~nIi~~~~~~~~~-~~~~~~~~   87 (311)
T cd07866           9 DYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVER-PDKSKRKR   87 (311)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC-CCCCCCCC
T ss_conf             98975698417090999999999998999999860113316689999999999972799822035799973-66544547


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
                      +..+.+++|++|.            +..   .++.....++        ....            ......+...+..+.
T Consensus        88 ~~~~~v~ey~~~d------------l~~---~l~~~~~~l~--------~~~~------------~~i~~qll~al~ylH  132 (311)
T cd07866          88 GSVYMVTPYMDHD------------LSG---LLENPSVKLT--------ESQI------------KCYMLQLLEGINYLH  132 (311)
T ss_pred             CEEEEEECCCCCC------------HHH---HHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHH
T ss_conf             6699998156876------------788---9985478999--------9999------------999999999999999


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             76521077744402234642256279604873162135
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +       +|+||.|+.|.|||++++...-++||+.|.
T Consensus       133 ~-------~~IiHRDlKPeNILl~~~~~~Kl~DFG~a~  163 (311)
T cd07866         133 E-------NHILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             H-------CCCEECCCCHHHEEECCCCCEEECCCCCCE
T ss_conf             7-------896011176899568899988985589873


No 87 
>cd06647 STKc_PAK_I Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include
Probab=97.78  E-value=0.00049  Score=45.76  Aligned_cols=139  Identities=15%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             05310046681200179994-399-589998216--69988999999999998532677555100102677875224515
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ..-++.|..|.--+.|+... .+| .|.+|+...  ....+.+..|+.+|..|..     |.+++-.+   .....+..+
T Consensus        21 Y~~~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~   92 (293)
T cd06647          21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKH-----PNIVNYLD---SYLVGDELW   92 (293)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             0876897048680999999889998999999882007538999999999986799-----89990999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+.+     ..++        ....            ......+...+..+.+   
T Consensus        93 ivmEy~~gg~L~-----------~~i~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~---  133 (293)
T cd06647          93 VVMEYLAGGSLT-----------DVVTE-----TCMD--------EGQI------------AAVCRECLQALEFLHS---  133 (293)
T ss_pred             EEEECCCCCCHH-----------HHHHH-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             999678989289-----------99870-----6999--------9999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       134 ----~~IiHRDiKp~NILl~~~g~vKl~DFGla~  163 (293)
T cd06647         134 ----NQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             ----CCCEECCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             ----893546687688789999999998288876


No 88 
>cd06621 PKc_MAPKK_Pek1_like Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharo
Probab=97.77  E-value=0.0012  Score=43.30  Aligned_cols=146  Identities=15%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             EEEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             053100466812001799943-995-8999821669988---99999999999853267755510010267787522451
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      ...++.|..|.--+.|++.-. +|+ |.+|+.......+   .+..|+.+|..|..     |.+++-.+ ..+..-.+..
T Consensus         3 y~~l~~lG~G~fg~V~~a~~~~~~~~~AiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~-~~~~~~~~~~   76 (287)
T cd06621           3 IVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKS-----PYIVKYYG-AFLDESSSSI   76 (287)
T ss_pred             CEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-EEECCCCCEE
T ss_conf             68985730488909999998999919999998303595899999999999985799-----99990978-9970889989


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.++..           .+.++......++        ..    ..        ......+...+..+.+  
T Consensus        77 ~ivmEy~~gg~L~~-----------~~~~~~~~~~~~~--------e~----~~--------~~i~~qil~gL~ylH~--  123 (287)
T cd06621          77 GIAMEYCEGGSLDS-----------IYKKVKKRGGRIG--------EK----VL--------GKIAESVLKGLSYLHS--  123 (287)
T ss_pred             EEEEECCCCCCHHH-----------HHHHHHHCCCCCC--------HH----HH--------HHHHHHHHHHHHHHHH--
T ss_conf             99995469993999-----------9999987179999--------99----99--------9999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +++||.|+.|.|||++.+...-+.||+.|.
T Consensus       124 -----~~iiHRDlKp~NILl~~~g~vKl~DFG~s~  153 (287)
T cd06621         124 -----RKIIHRDIKPSNILLTRKGQVKLCDFGVSG  153 (287)
T ss_pred             -----CCCEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             -----990422167455006799989999785575


No 89 
>cd07843 STKc_CDC2L1 The catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 subfamily. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CD
Probab=97.77  E-value=0.00076  Score=44.50  Aligned_cols=139  Identities=16%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             EEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             310046681200179994-399-58999821669988----999999999998532677555100102677875224515
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      -++.|..|.--+.|.+.. .+| .|.+|+.......+    ..-.|+.+|..|..     |.+++-.+ -......++.+
T Consensus         9 il~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~h-----pnIv~~~~-~~~~~~~~~~~   82 (293)
T cd07843           9 KLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQH-----PNIVTVKE-VVVGSNLDKIY   82 (293)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-EEECCCCCEEE
T ss_conf             2478313628099999988999899999980004220417889999999997689-----99415888-76058898799


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.-      ...         +......++        ....            ......+...+..+.+   
T Consensus        83 lvmE~~~~dl------~~~---------~~~~~~~~~--------~~~i------------~~i~~qil~aL~yLH~---  124 (293)
T cd07843          83 MVMEYVEHDL------KSL---------METMKQPFL--------QSEV------------KTLMLQLLSGVAHLHD---  124 (293)
T ss_pred             EEEECCCCCH------HHH---------HHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9993788878------999---------997489999--------9999------------9999999999999998---


Q ss_pred             HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             1077744402234642256279-604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                          +|+||.|+.|+|||++++ ++. ++||+.|.
T Consensus       125 ----~~IiHRDiKPeNILl~~~~~vK-i~DFG~a~  154 (293)
T cd07843         125 ----NWILHRDLKTSNLLLNNRGILK-ICDFGLAR  154 (293)
T ss_pred             ----CCEEEEECCHHHEEECCCCCEE-EECCCCHH
T ss_conf             ----8935725675665787899889-92247533


No 90 
>PRK10593 hypothetical protein; Provisional
Probab=97.76  E-value=6.7e-05  Score=51.33  Aligned_cols=234  Identities=12%  Similarity=0.066  Sum_probs=130.6

Q ss_pred             CEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHH-HHCCCCEE
Q ss_conf             605310046681200179994399589998216699889999999999985326-7755510010267787-52245155
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYG-FLCKKPAN  100 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~-~~~~k~~~  100 (316)
                      ++..++-|++-.--.-|.+..++|+-+-.+-+.-+.......+.-=+.-|++.| +++|.+-    |-.++ ...+.-+.
T Consensus        15 ~~srve~IsEq~y~~l~~Lyd~~G~~~pl~Arsf~~~G~a~qea~klsmLaR~gtvr~P~VY----g~~~~~q~p~~dvl   90 (297)
T PRK10593         15 KLSRVECISEKAYAALWALYDSQGNPMPLMARSFSTPGRAQQEAWKLSMLARSGTVRMPTVY----GVVTHEEHPGPDVL   90 (297)
T ss_pred             CCHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEECCEEE----EEEEECCCCCCCCH
T ss_conf             62022100234377899997059982305676624751889999998887506843213456----87741247764010


Q ss_pred             EEECCCCCCCCCC--CHHH----HHHHHHHHHHHHHH-CCCCCCC----CCCCCCHHHHHHHHHHHHHC---CC-H----
Q ss_conf             7864788707689--9899----99999986436753-0687543----32311245645766752001---55-2----
Q gi|254780795|r  101 IFSFIKGSPLNHI--SDIH----CEEIGSMLASMHQK-TKNFHLY----RKNTLSPLNLKFLWAKCFDK---VD-E----  161 (316)
Q Consensus       101 L~~~i~G~~~~~~--~~~~----~~~lG~~La~lH~~-~~~f~~~----r~~~~~~~~~~~~~~~~~~~---~~-~----  161 (316)
                      |++++.|.+.+.+  |++-    +.++-+.|=..|.. +.|+...    .+|.+ +.|.+...+-+...   .+ .    
T Consensus        91 LmErL~Gvsveap~rtp~rwe~l~eqiveglLawHr~DS~Gcvg~vdstqen~w-~~wyqqrveVLw~tL~~~~~~~ltm  169 (297)
T PRK10593         91 LLERLRGVSVEAPARTPERWEQLKDQIVEGLLAWHRQDSRGCVGAVDSTQENLW-PSWYQQRVEVLWTTLNQFNNTGLTM  169 (297)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             446751886557766878999999999999988773235575056631200456-8999999999999987217878761


Q ss_pred             HHHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCH
Q ss_conf             2788999999988876-52107774440223464225627--96048731621356800019899998643116888787
Q gi|254780795|r  162 DLKKEIDHEFCFLKES-WPKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNP  238 (316)
Q Consensus       162 ~~~~~l~~~l~~~~~~-~~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~  238 (316)
                      ..+..+-..-+-+... .+-+-+..+||||++..|+|++.  +++.|.+|=+.+.+.|+-|||=-    +|  + ...  
T Consensus       170 ~Dr~~L~r~r~~l~~lf~~fnd~~vlVHgn~~LrsmLkD~rSdqllaml~Pg~mlwapREyeLfr----L~--d-~~~--  240 (297)
T PRK10593        170 QDRRILFRTRECLPALFEGFNDNCVLVHGNFCLRSMLKDPRSDQLLAMVGPGLMLWAPREYELFR----LM--D-NGL--  240 (297)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCHHEEEE----CC--C-CCC--
T ss_conf             57899999898999996367998189867601998855830455888548754345632000121----13--5-787--


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999988764188998999999999999999999999998760
Q gi|254780795|r  239 SRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQN  283 (316)
Q Consensus       239 ~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~  283 (316)
                        ...++.-|.+..|+++.=           ..|-|+-.|||-..
T Consensus       241 --~~~Ll~~YlqkAPv~E~F-----------~~RRwly~LWd~v~  272 (297)
T PRK10593        241 --AEQLLWRYLQKAPVAESF-----------IWRRWLYVLWDEVA  272 (297)
T ss_pred             --CHHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHH
T ss_conf             --537899998619317889-----------99999999999999


No 91 
>cd07841 STKc_CDK7 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates 
Probab=97.75  E-value=0.00071  Score=44.70  Aligned_cols=136  Identities=18%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CC--HHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             0046681200179994-399-5899982166-99--889----9999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MN--EKD----LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~--~~~----l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +-|..|.--+.|++.. .+| .|.+|+.... ..  .+.    .-.|+++|..|..     |.+++..+   +...++..
T Consensus         6 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~rEi~~l~~l~h-----pnIv~~~~---~~~~~~~~   77 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKH-----PNIIGLLD---VFGHKSNI   77 (298)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEE
T ss_conf             49532728399999989999899999997314345667767899999999997599-----99664999---99889999


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.      ....      +.  +   ...      ........            .....+...++.+.+  
T Consensus        78 ~iVmEy~~g~------L~~~------l~--~---~~~------~l~e~~~~------------~~~~Qil~al~ylH~--  120 (298)
T cd07841          78 NLVFEFMETD------LEKV------IK--D---KSI------VLTPADIK------------SYMLMTLRGLEYLHS--  120 (298)
T ss_pred             EEEEECCCCC------HHHH------HH--H---CCC------CCCHHHHH------------HHHHHHHHHHHHHHH--
T ss_conf             9999578998------8999------87--2---388------99999999------------999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             21077744402234642256279-6048731621356
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                           +++||.|+.|.|||++.+ ++ -++||+.|+.
T Consensus       121 -----~~iiHRDIKPeNILl~~~g~v-Kl~DFG~a~~  151 (298)
T cd07841         121 -----NWILHRDLKPNNLLIASDGVL-KLADFGLARS  151 (298)
T ss_pred             -----CCEEECCCCHHHEEECCCCCE-EEEECCEEEE
T ss_conf             -----892403157788568789998-9836332356


No 92 
>cd06641 STKc_MST3 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation.
Probab=97.75  E-value=0.0006  Score=45.16  Aligned_cols=137  Identities=19%  Similarity=0.216  Sum_probs=75.8

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +.++.|..|.--+.|+... ..|+ +.+|+.......   ..+..|+.+|..|..     |.+++-.+   ...-+++.+
T Consensus         7 ~~l~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~   78 (277)
T cd06641           7 TKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-----PYVTKYYG---SYLKDTKLW   78 (277)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             9858960387809999998999979999998379784799999999999986799-----88993999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++.        .+   +   ..   + +      ......            ......+...+..+.+   
T Consensus        79 ivmEy~~gg~l~--------~~---~---~~---~-~------l~e~~~------------~~~~~qi~~aL~ylH~---  119 (277)
T cd06641          79 IIMEYLGGGSAL--------DL---L---EP---G-P------LDETQI------------ATILREILKGLDYLHS---  119 (277)
T ss_pred             EEEECCCCCCHH--------HH---H---HC---C-C------CCHHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             999799979699--------99---8---54---9-9------899999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||+++ +.+. ++||+.|.
T Consensus       120 ----~~iiHRDlKp~NILl~~~~~vK-l~DFGla~  149 (277)
T cd06641         120 ----EKKIHRDIKAANVLLSEHGEVK-LADFGVAG  149 (277)
T ss_pred             ----CCCCCEECCHHHEEECCCCCEE-EEECCCCE
T ss_conf             ----7981002453556887999999-94367840


No 93 
>cd07833 STKc_CDKL The catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learn
Probab=97.74  E-value=0.00059  Score=45.21  Aligned_cols=138  Identities=12%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             100466812001799943-995-8999821669988----9999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|++.-. +|+ +.+|++.......    .+..|+.+|..|..     |.+++-.+   ....++..+.
T Consensus         6 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~f~~~~~~~l   77 (288)
T cd07833           6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRH-----ENIVNLKE---AFRRKGRLYL   77 (288)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE
T ss_conf             239741608699999988999899999987233788999999999999986799-----99855989---9838999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      ++++++|....               .+.+...++        ......            .....+...+..+.+    
T Consensus        78 VmE~~~~~l~~---------------~~~~~~~~l--------~~~~i~------------~i~~qll~aL~yLH~----  118 (288)
T cd07833          78 VFEYVERTLLE---------------LLEASPGGL--------PPDAVR------------SYIWQLLQAIAYCHS----  118 (288)
T ss_pred             EEECCCCCHHH---------------HHHHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             99377997599---------------999767998--------999999------------999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             0777444022346422562796048731621356
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                         .|+||.|+.|.|+|++.+...-++||+.|..
T Consensus       119 ---~~iiHRDiKpeNILl~~~~~iKl~DFG~a~~  149 (288)
T cd07833         119 ---HNIIHRDIKPENILVSESGVLKLCDFGFARA  149 (288)
T ss_pred             ---CCCCCCCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             ---8846166778887888899889800555400


No 94 
>cd06644 STKc_STK10_LOK Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=97.74  E-value=0.002  Score=41.78  Aligned_cols=136  Identities=20%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             100466812001799943-99-5899982166998899---999999999853267755510010267787522451557
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      ++.|..|.--+.|++... +| .+.+|+.+.+ +..++   ..|+++|..|..     |.+++-.+   ....+++.+.+
T Consensus        17 ~~~lG~G~fg~Vy~a~~~~t~~~~A~K~i~~~-~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~iv   87 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYMVEIEILATCNH-----PYIVKLLG---AFYWDGKLWIM   87 (292)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE
T ss_conf             36981188919999998899969999998717-99999999999999987799-----99990989---99989989999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|..+..           .+   .....+++        ....            ......+...+..+.+     
T Consensus        88 mE~~~gg~L~~-----------~~---~~~~~~l~--------e~~~------------~~i~~qil~al~ylH~-----  128 (292)
T cd06644          88 IEFCPGGAVDA-----------IM---LELDRGLT--------EPQI------------QVICRQMLEALQYLHS-----  128 (292)
T ss_pred             EECCCCCCHHH-----------HH---HHHCCCCC--------HHHH------------HHHHHHHHHHHHHHHH-----
T ss_conf             98179983999-----------99---97179989--------9999------------9999999999999997-----


Q ss_pred             CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             7774440223464225627-9604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                        +++||.|+.|.|||++. +.+. ++||+.|+
T Consensus       129 --~~IiHRDlKp~NILl~~~g~vK-l~DFGls~  158 (292)
T cd06644         129 --MKIIHRDLKAGNVLLTLDGDIK-LADFGVSA  158 (292)
T ss_pred             --CCCEECCCCHHHEEECCCCCEE-EEECCCCE
T ss_conf             --9916444876758887999899-96688864


No 95 
>cd05611 STKc_Rim15_like STKc_Rim15_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stati
Probab=97.73  E-value=0.0011  Score=43.36  Aligned_cols=139  Identities=19%  Similarity=0.251  Sum_probs=70.4

Q ss_pred             EECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             0046681200179994-3995-899982166--9988999---9999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|+... .+|+ |.+|++.+.  .....+.   .+...|..    ...-|.+++-.+   ...-++..+.
T Consensus         2 ~~iG~G~fg~V~~a~~~~t~~~~AiK~i~~~~~~~~~~~~~~~~e~~~~~~----~~~hpnIv~~~~---~~~~~~~~~l   74 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMI----QGESPYVAKLYY---SFQSKDYLYL   74 (260)
T ss_pred             CCCCCCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCEEEE
T ss_conf             643558481999999889998999999825775466799999999999997----379995756999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.           +.+.+.    ..++        .....            .....+...+..+.+    
T Consensus        75 vmEy~~gg~L~-----------~~i~~~----~~l~--------e~~~~------------~~~~qil~al~ylH~----  115 (260)
T cd05611          75 VMEYLNGGDCA-----------SLIKTL----GGLP--------EDWAK------------QYIAEVVLGVEDLHQ----  115 (260)
T ss_pred             EEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             98388998799-----------999874----9999--------99999------------999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf             07774440223464225627960487316213568
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCND  215 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~  215 (316)
                         +|+||.|+.|+|||++.+...-++||+.|...
T Consensus       116 ---~~IiHRDiKpeNILl~~~~~~Kl~DFGls~~~  147 (260)
T cd05611         116 ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNG  147 (260)
T ss_pred             ---CCEECCCCCHHHEEECCCCCEEEEECCCCCCC
T ss_conf             ---89050666653466879998999517878517


No 96 
>cd07835 STKc_CDK1_like The catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1
Probab=97.73  E-value=0.00073  Score=44.61  Aligned_cols=138  Identities=18%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             10046681200179994-3995-899982166998----89999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|+... .+|+ +.+|+.......    ..+-.|+.+|..|..     |.+++-.+   +..-+++.+.
T Consensus         4 ~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~i   75 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNH-----PNIVRLLD---VVHSENKLYL   75 (283)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE
T ss_conf             579413718299999988999799999981001345679999999999987799-----99830635---4600998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.      .   .   +.+-+.    ....      ......            ......+...+..+.+    
T Consensus        76 v~E~~~~~------L---~---~~~~~~----~~~~------~~~~~~------------~~~~~qil~al~ylH~----  117 (283)
T cd07835          76 VFEFLDLD------L---K---KYMDSS----PLTG------LDPPLI------------KSYLYQLLQGIAYCHS----  117 (283)
T ss_pred             EEECCCCC------H---H---HHHHHC----CCCC------CCHHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             99768987------8---9---999863----5789------899999------------9999999999999997----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +++||.|+.|.|||++.+...-++||+.|.
T Consensus       118 ---~~IiHRDiKp~NILl~~~~~iKl~DFGla~  147 (283)
T cd07835         118 ---HRVLHRDLKPQNLLIDREGALKLADFGLAR  147 (283)
T ss_pred             ---CCCEECCCCCCCEEECCCCCEEEEECCCHH
T ss_conf             ---893664077200688899988998767322


No 97 
>cd07848 STKc_CDKL5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations a
Probab=97.72  E-value=0.00087  Score=44.13  Aligned_cols=136  Identities=13%  Similarity=0.207  Sum_probs=73.5

Q ss_pred             EECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             0046681200179994-3995-8999821669988----99999999999853267755510010267787522451557
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +-|..|.--+.|++.- .+|+ |.+|++.......    .+-.|+.+|..|...     .+++-.+   .....+..+.+
T Consensus         7 ~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~h~-----nIv~l~~---~f~~~~~~~lV   78 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE-----NIVELKE---AFRRRGKLYLV   78 (287)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEEE---EEEECCEEEEE
T ss_conf             796417486999999889998999999874005979999999999999867998-----9873989---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|....     .          +.....+++        .       +.+.     .....+...+..+.+     
T Consensus        79 mE~~~~~ll~-----~----------~~~~~~~~~--------~-------~~i~-----~~~~qil~al~ylH~-----  118 (287)
T cd07848          79 FEYVEKNMLE-----L----------LEEMPNGVP--------P-------EKVR-----SYIYQLIKAIHWCHK-----  118 (287)
T ss_pred             EECCCCCHHH-----H----------HHHCCCCCC--------H-------HHHH-----HHHHHHHHHHHHHHH-----
T ss_conf             9758998199-----9----------986448999--------9-------9999-----999999999999998-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        .++||.|+.|.|||++.+...-++||+.|.
T Consensus       119 --~~IiHRDiKPeNILl~~~~~iKl~DFG~a~  148 (287)
T cd07848         119 --NDIVHRDIKPENLLISHNDVLKLCDFGFAR  148 (287)
T ss_pred             --CCCCCCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             --892405677899788889988981376444


No 98 
>cd06620 PKc_MAPKK_Byr1_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis
Probab=97.71  E-value=0.0019  Score=41.92  Aligned_cols=140  Identities=15%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             53100466812001799943-995-899982166998---8999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +-++.|..|.--+.|++... +|+ +++|+.......   ..+..|+.+|..|..     |.+++-.+   .....+..+
T Consensus         8 ~il~~iG~G~fG~V~~a~~~~~~~~~A~K~~~~~~~~~~~~~~~~Ei~il~~l~h-----p~IV~l~~---~~~~~~~~~   79 (284)
T cd06620           8 ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRS-----PYIVSFYG---AFLNENNIC   79 (284)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             8988851289919999998799969999998530598999999999999986799-----99993999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..     +      +.+-+    .+        ......            .....+...+..+...  
T Consensus        80 ivmEy~~~g~L~~-----~------~~~~~----~l--------~e~~~~------------~~~~qi~~~l~ylH~~--  122 (284)
T cd06620          80 MCMEFMDCGSLDR-----I------YKKGG----PI--------PVEILG------------KIAVAVVEGLTYLYNV--  122 (284)
T ss_pred             EEEECCCCCCHHH-----H------HHHCC----CC--------CHHHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             9996579997999-----9------98659----99--------999999------------9999999999999871--


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          .++||.|+.|.|||++++...-++||+.+.
T Consensus       123 ----~~IvHRDlKp~NILl~~~~~vKl~DFG~s~  152 (284)
T cd06620         123 ----HRIMHRDIKPSNILVNSRGQIKLCDFGVSG  152 (284)
T ss_pred             ----CCEEECCCCCCCCEECCCCCEEEEECCCCC
T ss_conf             ----898632268766107799999996387774


No 99 
>cd05572 STKc_cGK_PKG STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a  soluble pr
Probab=97.71  E-value=0.00089  Score=44.07  Aligned_cols=131  Identities=23%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             CCCEEEEEEEEE-CCC-CEEEEEECCC-C-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             681200179994-399-5899982166-9-9---8899999999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQT-SKG-TFILTIYEKR-M-N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t-~~~-~yiLri~e~~-~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|++.. .+| .|.+|+..+. . +   ...+..|+++|..|..     |.+++-.+   ..+-.+..+.+++|
T Consensus         3 ~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~l~~---~~~~~~~~yivmE~   74 (262)
T cd05572           3 VGGFGRVELVQYKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNS-----PFIVRLYR---TFKDKKYIYFLMEY   74 (262)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEEC
T ss_conf             78366999999889998999999857886686799999999999987799-----89997899---99989999999927


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+..              .+... ..++        ....            ......+...++.+.+       +
T Consensus        75 ~~gg~L~~--------------~i~~~-~~l~--------e~~~------------~~~~~qil~al~ylH~-------~  112 (262)
T cd05572          75 CLGGELWT--------------ILRDR-GLLD--------EYTA------------RFYTACVVEAFEYLHN-------R  112 (262)
T ss_pred             CCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-------C
T ss_conf             99989899--------------99984-9999--------9999------------9999999999999997-------8


Q ss_pred             CEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             44402234642256279-604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                      |+||.|+.|.|+|++.+ .+. ++||+.|.
T Consensus       113 ~IiHRDiKpeNILi~~~g~vK-l~DFG~a~  141 (262)
T cd05572         113 GIIYRDLKPENLLLDSNGYVK-LVDFGFAK  141 (262)
T ss_pred             CCEEEECCCCCCCCCCCCCEE-ECCCCEEE
T ss_conf             947605687541325799988-64046006


No 100
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=97.71  E-value=0.0016  Score=42.37  Aligned_cols=126  Identities=20%  Similarity=0.293  Sum_probs=66.9

Q ss_pred             EEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf             1799943-99-5899982166998---89999999999985326775551001026778752245155786478870768
Q gi|254780795|r   38 NFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNH  112 (316)
Q Consensus        38 ny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~  112 (316)
                      .|++... +| .|.+|+.......   +.+..|+++|..|..     |.+++..+   ....++..+.+++|++|.++..
T Consensus         5 Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~h-----~niv~~~~---~~~~~~~~~ivmEy~~~gsL~~   76 (244)
T smart00220        5 VYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKH-----PNIVRLYD---VFEDEDKLYLVMEYCDGGDLFD   76 (244)
T ss_pred             EEEEEECCCCCEEEEEEEEHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCCCE---EEEECCEEEEEEECCCCCCHHH
T ss_conf             999999899989999998555296899999999999997799-----29997334---9998999999996889993899


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf             99899999999864367530687543323112456457667520015522788999999988876521077744402234
Q gi|254780795|r  113 ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLF  192 (316)
Q Consensus       113 ~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~  192 (316)
                                 .+   ... ..+        .....            ......+...+..+.+       +|++|+|+.
T Consensus        77 -----------~i---~~~-~~l--------~~~~i------------~~~~~qi~~gl~ylH~-------~~ivHrDiK  114 (244)
T smart00220       77 -----------LL---KKR-GRL--------SEDEA------------RFYARQILSALEYLHS-------NGIIHRDLK  114 (244)
T ss_pred             -----------HH---HHC-CCC--------CHHHH------------HHHHHHHHHHHHHHHH-------CCEEECCCC
T ss_conf             -----------99---876-999--------99999------------9999999999999998-------992524366


Q ss_pred             CCCEEECCC-CCEEEECCCCCCC
Q ss_conf             642256279-6048731621356
Q gi|254780795|r  193 PDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       193 ~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                      |+|||++++ ++. +.||+.|..
T Consensus       115 p~NIli~~~~~iK-l~DFG~a~~  136 (244)
T smart00220      115 PENILLDEDGHVK-LADFGLARQ  136 (244)
T ss_pred             HHHEEECCCCCEE-EEECCCCEE
T ss_conf             5637985899989-987461267


No 101
>cd06606 STKc_MAPKKK Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included
Probab=97.71  E-value=0.00057  Score=45.32  Aligned_cols=136  Identities=17%  Similarity=0.222  Sum_probs=70.8

Q ss_pred             ECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             0466812001799943-99-5899982166-9988---999999999998532677555100102677875224515578
Q gi|254780795|r   29 PIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      -|..|.--+.|++... +| .|.+|+.... .+..   .+..|+.+|..|+.     |.+|+-.+ . ...-.+..+.++
T Consensus         7 ~IG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~h-----pnIv~~~~-~-~~~~~~~~~lvm   79 (259)
T cd06606           7 LLGRGSFGSVYLALSKDTGELVAVKSVELSSDSEEELESLEREIRILSKLQH-----PNIVRYYG-C-EVTEENTLNIFM   79 (259)
T ss_pred             EEECCCCEEEEEEEECCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-E-EEECCCEEEEEE
T ss_conf             9631899299999999999899999984310898999999999999987799-----89807989-9-994798899999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|.++..     .      +.+-    ..++        ....            ......+...+..+.+      
T Consensus        80 Ey~~~g~L~~-----~------i~~~----~~~~--------e~~~------------~~~~~qi~~al~ylH~------  118 (259)
T cd06606          80 EYVSGGSLAS-----L------LKKF----GKLP--------EPVI------------RRYTRQILEGLAYLHS------  118 (259)
T ss_pred             ECCCCCCHHH-----H------HHHC----CCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             7899988999-----9------9865----9999--------9999------------9999999999999997------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +++||.|+.|.|||++.+...-|+||+.|.
T Consensus       119 -~~iiHrDlKp~NILl~~~~~iKl~DFGla~  148 (259)
T cd06606         119 -NGIVHRDIKGANILLDSDGVVKLADFGCAK  148 (259)
T ss_pred             -CCEEECCCCHHHEEECCCCCEEEEECCCEE
T ss_conf             -999844038899698789989999878248


No 102
>cd06637 STKc_TNIK Serine/threonine kinases (STKs),Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytos
Probab=97.71  E-value=0.0012  Score=43.21  Aligned_cols=148  Identities=19%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH----HH
Q ss_conf             8605310046681200179994-3995-89998216-6998899999999999853267755510010267787----52
Q gi|254780795|r   22 GQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG----FL   94 (316)
Q Consensus        22 g~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~----~~   94 (316)
                      |...-++.|..|.--+.|+... ..|+ +.+|+... ....+++..++++|..+..+.. +...    .|..+.    ..
T Consensus         6 g~y~~~~~IG~G~fg~Vy~a~~~~~~~~~AiK~i~~~~~~~~~~~~E~~~l~~~~~h~n-i~~~----~~~~~~~~~~~~   80 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN-IATY----YGAFIKKNPPGM   80 (272)
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-EEEE----EEEEEECCCCCC
T ss_conf             88698779922878299999998999799999986687869999999999985659980-7489----999996578887


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      ++..+.+++|++|.++.           ..+   +. .++.      ........            .....+...+..+
T Consensus        81 ~~~~~ivmE~~~~G~L~-----------~~l---~~-~~~~------~~~e~~i~------------~i~~qi~~gl~yl  127 (272)
T cd06637          81 DDQLWLVMEFCGAGSVT-----------DLI---KN-TKGN------TLKEEWIA------------YICREILRGLSHL  127 (272)
T ss_pred             CCEEEEEEECCCCCCHH-----------HHH---HH-CCCC------CCCHHHHH------------HHHHHHHHHHHHH
T ss_conf             88899999588999799-----------999---87-1689------99999999------------9999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             8765210777444022346422562796048731621356
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .+       .++||.|+.|.|||++++...-|+||+.|..
T Consensus       128 H~-------~~iiHRDlKp~NILl~~~~~vKi~DFGls~~  160 (272)
T cd06637         128 HQ-------HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  160 (272)
T ss_pred             HH-------CCCCCCCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             98-------9915674678998987999899985888658


No 103
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=97.70  E-value=0.00069  Score=44.78  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=77.9

Q ss_pred             CCCCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             89986053100466812001799943-99-58999821669--988---9999999999985326775551001026778
Q gi|254780795|r   19 YAIGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLY   91 (316)
Q Consensus        19 y~lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~   91 (316)
                      +.|.+..-++.|..|.--..|++... +| .|.+|+..++.  ...   .+..|..+|..|..     |.+++..+   .
T Consensus        15 ~~l~dyei~~~LG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~H-----p~Iv~l~~---~   86 (329)
T PTZ00263         15 WKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSH-----PFIVNMMC---S   86 (329)
T ss_pred             CCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---E
T ss_conf             654063898897327380999999989998999999837884598999999999999997799-----89890999---9


Q ss_pred             HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             75224515578647887076899899999999864367530687543323112456457667520015522788999999
Q gi|254780795|r   92 GFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEF  171 (316)
Q Consensus        92 ~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  171 (316)
                      ..-.+..+.+++|++|..+.              ..+.+. ..++        .....            .....+...+
T Consensus        87 f~~~~~lylvmEy~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL  131 (329)
T PTZ00263         87 FQDENRVYFLLEFVVGGELF--------------THLRKA-GRFP--------NDVAK------------FYHAELVLAF  131 (329)
T ss_pred             EEECCEEEEEEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHH
T ss_conf             99899999999868998589--------------999764-8999--------99999------------9999999999


Q ss_pred             HHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             988876521077744402234642256279604873162135
Q gi|254780795|r  172 CFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       172 ~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..+.+       +++||.|+.|.|||++++...-++||+.|.
T Consensus       132 ~yLH~-------~~IiHRDLKPeNILl~~~g~vKL~DFGlak  166 (329)
T PTZ00263        132 EYLHS-------KDIIYRDLKPENLLLDNKGHVKVTDFGFAK  166 (329)
T ss_pred             HHHHH-------CCCEECCCCCCCEEECCCCCEEECCHHHHH
T ss_conf             99997-------888604335432467479988623405542


No 104
>cd07838 STKc_CDK4_6_like The catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are 
Probab=97.70  E-value=0.0011  Score=43.39  Aligned_cols=144  Identities=20%  Similarity=0.208  Sum_probs=73.3

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CCC
Q ss_conf             10046681200179994-399-5899982166998----899999999999853267755510010267787522--451
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC--KKP   98 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~--~k~   98 (316)
                      ++.|..|.--+.|.+.- .+| .|.+|+.......    ...-.|+.+|..|...  ..|.+++..+--......  ...
T Consensus         4 ~~~lG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~l~~~--~HpnIv~~~~~~~~~~~~~~~~~   81 (287)
T cd07838           4 LAEIGEGAYGTVYKARDLHDGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESF--EHPNIVRLLDVCHGPRTDRELKL   81 (287)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEECCCCCCCCEE
T ss_conf             8997237080999999889997999999820102105589999999999976265--99989889999830467777469


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.      ..      ..+.+ |      +   .........            ......+...+..+.+  
T Consensus        82 ~lvmE~~~~d------L~------~~l~~-~------~---~~~~~e~~i------------~~~~~qil~al~yLH~--  125 (287)
T cd07838          82 TLVFEHVDQD------LA------TYLSK-C------P---KPGLPPETI------------KDLMRQLLRGLDFLHS--  125 (287)
T ss_pred             EEEEECCCCC------HH------HHHHH-C------C---CCCCCHHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             9999379988------99------99986-6------6---789799999------------9999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           .|+||.|+.|.|||++.+...-++||+.|.
T Consensus       126 -----~gIiHRDlKpeNIll~~~~~iKl~DFGla~  155 (287)
T cd07838         126 -----HRIVHRDLKPQNILVTSDGQVKIADFGLAR  155 (287)
T ss_pred             -----CCEEECCCCHHHEEECCCCCEEECCCCCCE
T ss_conf             -----995546277899798799988971466454


No 105
>cd06640 STKc_MST4 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration.
Probab=97.70  E-value=0.0012  Score=43.16  Aligned_cols=138  Identities=20%  Similarity=0.207  Sum_probs=75.8

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ..++.|..|.--+.|+... ..|+ +.+|+.......   ..+..|+.+|..|..     |.+++-.+   ...-+++.+
T Consensus         7 ~~l~~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~   78 (277)
T cd06640           7 TKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-----PYVTKYYG---SYLKGTKLW   78 (277)
T ss_pred             EEEEEECCCCCCEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             9889971388909999998999979999998678784799999999999986799-----88894999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..           .+   . . ..++        ....            ......+...+..+.+   
T Consensus        79 ivmEy~~gg~l~~-----------~i---~-~-~~~~--------e~~~------------~~~~~qi~~aL~ylH~---  119 (277)
T cd06640          79 IIMEYLGGGSALD-----------LL---R-A-GPFD--------EFQI------------ATMLKEILKGLDYLHS---  119 (277)
T ss_pred             EEEECCCCCCHHH-----------HH---H-C-CCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9997999793999-----------98---6-3-9999--------9999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||++.+...-++||+.|.
T Consensus       120 ----~~iiHRDiKp~NILl~~~g~vKl~DFGla~  149 (277)
T cd06640         120 ----EKKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             ----CCCCCCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             ----798233456366047799999996387651


No 106
>cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s
Probab=97.69  E-value=0.00048  Score=45.82  Aligned_cols=146  Identities=14%  Similarity=0.193  Sum_probs=72.9

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCCCCCCCCC-CH
Q ss_conf             99848998605310046681200179994-399-5899982166-998---89999999999985326775551001-02
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLPCPIPIPR-ND   87 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gipvP~pi~~-~~   87 (316)
                      ++++|.+     ++.|..|.--+.|+..- ..| .+.+|+..+. .+.   ..+..|+.+|..|...+|-  ..+.. ..
T Consensus        15 v~~RY~i-----~~~LG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~hpnIV--~~~~~f~~   87 (355)
T cd07874          15 VLKRYQN-----LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNII--SLLNVFTP   87 (355)
T ss_pred             HHHCEEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCC--EEEEEEEC
T ss_conf             2016188-----1695216184999999889998999999892454979999999999999867996989--19899841


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             67787522451557864788707689989999999986436753068754332311245645766752001552278899
Q gi|254780795|r   88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI  167 (316)
Q Consensus        88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  167 (316)
                      .+.+.. .+..+.++++++|...        ..+ +         ..++        .....            .....+
T Consensus        88 ~~~~~~-~~~~yivmE~~~~~l~--------~~~-~---------~~l~--------~~~i~------------~i~~qi  128 (355)
T cd07874          88 QKSLEE-FQDVYLVMELMDANLC--------QVI-Q---------MELD--------HERMS------------YLLYQM  128 (355)
T ss_pred             CCCCCC-CCCEEEEEEECCCCHH--------HHH-H---------HCCC--------HHHHH------------HHHHHH
T ss_conf             774211-5617999970599889--------998-7---------3499--------99999------------999999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             9999988876521077744402234642256279604873162135
Q gi|254780795|r  168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ...+..+.+       .|+||.|+.|.|||++++...-|+||+.|.
T Consensus       129 l~gL~ylH~-------~gIiHRDLKPeNILl~~~~~vKl~DFGlA~  167 (355)
T cd07874         129 LCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR  167 (355)
T ss_pred             HHHHHHHHH-------CCCEECCCCHHHEEECCCCCEECCCCCCCC
T ss_conf             999999987-------982532487788678689974014544022


No 107
>cd07844 STKc_PCTAIRE_like The catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as 
Probab=97.69  E-value=0.0018  Score=42.10  Aligned_cols=138  Identities=14%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             53100466812001799943-995-89998216699---88999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      .-++.|..|.--+.|.+... +|+ |.+|+......   ....-.|+.+|..|...+     +++-.+   +...++..+
T Consensus         8 ~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~h~n-----Iv~l~~---~~~~~~~~~   79 (291)
T cd07844           8 KKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHAN-----IVTLHD---IIHTKKTLT   79 (291)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-----CCEEEE---EEEECCEEE
T ss_conf             887698228693999999889998999999870101222788999999998678989-----874988---884188689


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.-            .+.+.+ |  ...+        .....            ......+...+..+.+   
T Consensus        80 iv~Ey~~~~L------------~~~l~~-~--~~~l--------~~~~i------------~~~~~Qil~al~yLH~---  121 (291)
T cd07844          80 LVFEYLDTDL------------KQYMDD-C--GGGL--------SMHNV------------RLFLFQLLRGLAYCHQ---  121 (291)
T ss_pred             EEEEECCCCH------------HHHHHH-C--CCCC--------CHHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9998028988------------999997-6--8999--------99999------------9999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||+++ +++. ++||+.|.
T Consensus       122 ----~~iiHRDiKP~NILl~~~~~iK-l~DFG~s~  151 (291)
T cd07844         122 ----RRVLHRDLKPQNLLISERGELK-LADFGLAR  151 (291)
T ss_pred             ----CCEEECCCCHHHEEECCCCCEE-ECCCCCCH
T ss_conf             ----9946671767986888899788-64115331


No 108
>cd06642 STKc_STK25_YSK1 Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares feat
Probab=97.69  E-value=0.0011  Score=43.43  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=74.4

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +.++.|..|.--+.|+..- ..|+ +.+|+.......   ..+..|+.+|..|..     |.+++-.+   ...-.++.+
T Consensus         7 ~~l~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~   78 (277)
T cd06642           7 TKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-----PYITRYYG---SYLKGTKLW   78 (277)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             9858960277829999998999969999998578884799999999999986799-----88895999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++..           .+   ..  ..+        .....            ......+...+..+.+   
T Consensus        79 ivmEy~~gg~L~~-----------~l---~~--~~l--------~e~~~------------~~i~~qi~~al~ylH~---  119 (277)
T cd06642          79 IIMEYLGGGSALD-----------LL---KP--GPL--------EETYI------------ATILREILKGLDYLHS---  119 (277)
T ss_pred             EEEECCCCCCHHH-----------HH---HC--CCC--------CHHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9997999599999-----------98---44--999--------99999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             1077744402234642256279-604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||++.+ .+ -+.||+.|.
T Consensus       120 ----~~iiHRDlKp~NILl~~~~~v-Kl~DFGla~  149 (277)
T cd06642         120 ----ERKIHRDIKAANVLLSEQGDV-KLADFGVAG  149 (277)
T ss_pred             ----CCCCCCCCCCCCCEECCCCCE-EEEEECEEE
T ss_conf             ----895504247431116689988-884312035


No 109
>cd05578 STKc_Yank1 STKc_Yank1: Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=97.69  E-value=0.0013  Score=42.92  Aligned_cols=136  Identities=20%  Similarity=0.247  Sum_probs=73.4

Q ss_pred             EECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             004668120017999439-9-5899982166--998---89999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|++...+ | .|.+|++.+.  ...   ..+..|+.+|..|...     .+++-.+   ...-.++.+.
T Consensus         6 ~~iG~G~fg~Vy~~~~~~t~~~~AvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~Hp-----nIv~~~~---~~~~~~~~~i   77 (258)
T cd05578           6 RVIGKGSFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNELQILQSLEHP-----FLVNLWY---SFQDEEDMYL   77 (258)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEEE---EEEECCEEEE
T ss_conf             5982288959999998899989999998178866989999999999999877998-----9895899---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.           ..+.   + ...+        .....            ......+...+..+.+    
T Consensus        78 vmEy~~~g~L~-----------~~l~---~-~~~~--------~e~~~------------~~~~~Qi~~aL~ylH~----  118 (258)
T cd05578          78 VVDLLLGGDLR-----------YHLQ---Q-KVKF--------SEEQV------------KFYVCEIVLALEYLHS----  118 (258)
T ss_pred             EEECCCCCCHH-----------HHHH---H-CCCC--------CHHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             99586998589-----------9998---7-5999--------99999------------9999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             077744402234642256279-6048731621356
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                         ++++|.|+.|+|||++++ .+. +.||+.|..
T Consensus       119 ---~~IiHRDIKpeNILl~~~g~vk-l~DFG~a~~  149 (258)
T cd05578         119 ---KGIIHRDIKPDNILLDEQGHAH-LTDFNIATK  149 (258)
T ss_pred             ---CCEEECCCCHHHEEECCCCCEE-EEECCCCEE
T ss_conf             ---8944045775777898999899-944888867


No 110
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=97.68  E-value=0.00035  Score=46.67  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=26.1

Q ss_pred             CCCCEEECCCCCCCEEECC-----CCCEEEECCCCCCC
Q ss_conf             7774440223464225627-----96048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYN-----NKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~-----~~i~giIDF~~~~~  214 (316)
                      +..|+.|+|.||+|+++..     +++ ++|||+-++.
T Consensus       277 f~dGFFHADpHPGNi~v~~d~~~~g~~-~~lDfGmvG~  313 (540)
T PRK04750        277 FRDGFFHADMHPGNIFVSYDHPENPRY-IALDFGIVGS  313 (540)
T ss_pred             CCCCCEECCCCCHHEEECCCCCCCCCE-EEEEEEEECC
T ss_conf             008866069995103645777778747-8874013213


No 111
>cd06607 STKc_TAO Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3.
Probab=97.68  E-value=0.00086  Score=44.17  Aligned_cols=153  Identities=16%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             HHHHHHHHCCCCCE-EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999984899860-53100466812001799943-995-899982166--9988---9999999999985326775551
Q gi|254780795|r   11 EIQSFVQEYAIGQL-NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIP   82 (316)
Q Consensus        11 el~~il~~y~lg~~-~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~p   82 (316)
                      ||..++++=|..+. .-++.|..|.--+.|++... +|+ |.+|+....  ...+   ++..|+.+|..|..     |.+
T Consensus         3 ~~~~~~~~~dp~~~Y~~l~~IG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnI   77 (307)
T cd06607           3 EIAELFSKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRH-----PNT   77 (307)
T ss_pred             CHHHHCCCCCHHHCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCC
T ss_conf             545406688967807953896038881999999889997999999851112578999999999999996799-----899


Q ss_pred             CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             00102677875224515578647887076899899999999864367530687543323112456457667520015522
Q gi|254780795|r   83 IPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED  162 (316)
Q Consensus        83 i~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~  162 (316)
                      ++-. |  ...-.+..+.+++|++|...            ..+- .++  +.++        .....            .
T Consensus        78 v~~~-~--~~~~~~~~~ivmEy~~G~~~------------~~~~-~~~--~~l~--------e~~i~------------~  119 (307)
T cd06607          78 IEYK-G--CYLREHTAWLVMEYCLGSAS------------DILE-VHK--KPLQ--------EVEIA------------A  119 (307)
T ss_pred             CCEE-E--EEEECCEEEEEEEECCCCHH------------HHHH-HHC--CCCC--------HHHHH------------H
T ss_conf             9199-9--99989989999990789848------------9999-843--8999--------99999------------9


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             788999999988876521077744402234642256279604873162135
Q gi|254780795|r  163 LKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       163 ~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ....+...+..+.+       .++||.|+.|.|||++++...-+.||+.|.
T Consensus       120 i~~qil~aL~yLH~-------~~iiHRDlKP~NILl~~~g~vKl~DFG~a~  163 (307)
T cd06607         120 ICHGALQGLAYLHS-------HERIHRDIKAGNILLTEPGTVKLADFGSAS  163 (307)
T ss_pred             HHHHHHHHHHHHHH-------CCEEECCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             99999999999986-------897605467000789899999998679874


No 112
>cd05574 STKc_phototropin_like STKc_phototropin_like: Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalyti
Probab=97.68  E-value=0.0014  Score=42.72  Aligned_cols=134  Identities=21%  Similarity=0.306  Sum_probs=73.2

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-58999821669--98---8999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++... +| .|.+|+..+..  ..   ..+..|+++|..|..     |.+++-.+   ..+-.+..+
T Consensus         6 ~~~LG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~l~~---~~~~~~~~y   77 (315)
T cd05574           6 IKLLGKGDVGRVYLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH-----PFLPTLYA---SFQTETYLC   77 (315)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             5880128891999999999998999999837886687899999999999987799-----89990999---998899899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHH
Q ss_conf             5786478870768998999999998643675306875433231124564576675200155227----889999999888
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL----KKEIDHEFCFLK  175 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~  175 (316)
                      .+++|++|..+..           .+   ...        ..               ..+++..    ...+...+..+.
T Consensus        78 lvmE~~~gG~L~~-----------~l---~~~--------~~---------------~~l~e~~~~~~~~qil~al~ylH  120 (315)
T cd05574          78 LVMDYCPGGELFR-----------LL---QRQ--------PG---------------KCFPEEVARFYAAEVLLALEYLH  120 (315)
T ss_pred             EEEECCCCCCHHH-----------HH---HHC--------CC---------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9997789983899-----------99---860--------48---------------99999999999999999999998


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             7652107774440223464225627-9604873162135
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      +       +|+||.|+.|.|+|+++ +.+. ++||+.|.
T Consensus       121 ~-------~~IvHRDlKPeNILl~~~g~vk-l~DFgls~  151 (315)
T cd05574         121 L-------LGIVYRDLKPENILLHEDGHIM-LSDFDLSK  151 (315)
T ss_pred             H-------CCEEEEECCHHEEEECCCCCEE-EEECCCCE
T ss_conf             5-------8788620452107997999789-95468632


No 113
>cd05112 PTKc_Itk Catalytic Domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=97.67  E-value=0.0027  Score=40.92  Aligned_cols=141  Identities=18%  Similarity=0.230  Sum_probs=80.3

Q ss_pred             EEEEEECCCCCEEEEEEEEECCC-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             05310046681200179994399-589998216-6998899999999999853267755510010267787522451557
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.-.+.|..|.--+.|+....++ +..+|+.+. ..+.+++-.|+++|..|+.     |.+++-. |-  ..-.+..+.+
T Consensus         6 ~~~~~~iG~G~fg~Vy~~~~~~~~~VAvK~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g~--~~~~~~~~iv   77 (256)
T cd05112           6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSH-----PKLVQLY-GV--CTERSPICLV   77 (256)
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCCC-EE--EEECCEEEEE
T ss_conf             09878980585859999998799999999988687888999999999997699-----9890403-17--7219989999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..     .         |+..        +......   ..+         .+...+...+..+.+     
T Consensus        78 ~Ey~~~G~L~~-----~---------l~~~--------~~~~~~~---~~~---------~i~~~ia~gl~yLH~-----  118 (256)
T cd05112          78 FEFMEHGCLSD-----Y---------LRAQ--------RGKFSQE---TLL---------GMCLDVCEGMAYLES-----  118 (256)
T ss_pred             EECCCCCCHHH-----H---------HHHC--------CCCCCHH---HHH---------HHHHHHHHHHHHHHH-----
T ss_conf             96689998899-----9---------9754--------7999999---999---------999999999999836-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        +++||+|+.+.|||++++...-|-||+.+.
T Consensus       119 --~~iiHrDlk~~NiLl~~~~~~Kl~DFGls~  148 (256)
T cd05112         119 --SNVIHRDLAARNCLVGENQVVKVSDFGMTR  148 (256)
T ss_pred             --CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             --891567577163899899989996268750


No 114
>cd06917 STKc_NAK1_like Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner.
Probab=97.67  E-value=0.0016  Score=42.42  Aligned_cols=138  Identities=16%  Similarity=0.235  Sum_probs=78.1

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             0046681200179994-399-5899982166998---8999999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +-|..|.--+.|+... .+| .|.+|++......   .++..|+++|..|+..+  .|.+++-.+   ...-+++.+.++
T Consensus         7 ~~iG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~h~~--~pnIv~~~~---~~~~~~~~~ivm   81 (277)
T cd06917           7 ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQ--PPNITKYYG---SYLKGPRLWIIM   81 (277)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC--CCCEEEEEE---EEEECCEEEEEE
T ss_conf             797027683999999989998999999853149679999999999999717899--998789999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.        .+   +    +. ..++        .....            .....+...+..+.+      
T Consensus        82 E~~~~g~L~--------~~---~----~~-~~~~--------e~~~~------------~~~~qi~~al~ylH~------  119 (277)
T cd06917          82 EYAEGGSVR--------TL---M----KA-GPIA--------EKYIS------------VIIREVLVALKYIHK------  119 (277)
T ss_pred             ECCCCCCHH--------HH---H----HC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------
T ss_conf             377988899--------99---8----54-9999--------99999------------999999999999987------


Q ss_pred             CCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             7744402234642256279-6048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                       +|+||.|+.|.|||++.+ ++. +.||+.|..
T Consensus       120 -~~iiHRDlKpeNILl~~~~~vK-L~DFGla~~  150 (277)
T cd06917         120 -VGVIHRDIKAANILVTNTGNVK-LCDFGVAAL  150 (277)
T ss_pred             -CCCEEEECCHHHCEECCCCCEE-EECCCCCEE
T ss_conf             -8955534562541067999889-904527657


No 115
>cd07831 STKc_MOK The catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase subfamily. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and different
Probab=97.67  E-value=0.0014  Score=42.73  Aligned_cols=138  Identities=17%  Similarity=0.273  Sum_probs=71.7

Q ss_pred             EECCCCCEEEEEEEEE-CCCC-EEEEEECCCC-CHHHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             0046681200179994-3995-8999821669-988999--999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKRM-NEKDLP--VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~-~~~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|..|.--+.|++.. .+|+ |.+|+..+.. +..++.  .++.+|..|..+    |.+++-.+ -.+..-.+..+.++
T Consensus         5 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~~h----pnIv~~~~-~~~~~~~~~~~lv~   79 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQAMRRLSPH----PNIIRLIE-VLFDRKTGRLALVF   79 (282)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC----CCEEEEEE-EEEECCCCEEEEEE
T ss_conf             59730718099999988999899999988002888899999999999853799----99847999-99967898799999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      ++++|.-         .+   .   +..  ..      ........            ......+...+..+.+      
T Consensus        80 E~~~~~l---------~~---~---l~~--~~------~~l~e~~~------------~~~~~Qil~al~~LH~------  118 (282)
T cd07831          80 ELMDMNL---------YE---L---IKG--RK------RPLPEKRV------------KNYMYQLLKSLDHMHR------  118 (282)
T ss_pred             ECCCHHH---------HH---H---HHH--CC------CCCCHHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             4772789---------99---9---996--69------99999999------------9999999999999998------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +|+||.|+.|.|||++++.+. ++||+.|.
T Consensus       119 -~~iiHRDiKp~NILl~~~~~K-l~DFG~a~  147 (282)
T cd07831         119 -NGIFHRDIKPENILIKDDILK-LADFGSCR  147 (282)
T ss_pred             -CCEECCCCCCCEEEEECCEEE-EEECCCCE
T ss_conf             -990613054013997089089-94336440


No 116
>cd05122 PKc_STE Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phospho
Probab=97.66  E-value=0.00062  Score=45.07  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=75.0

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             0046681200179994-399-58999821669--9889999999999985326775551001026778752245155786
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      +.|..|.--+.|+... .+| .|.+|+.+.+.  ..+.+..|+++|..|+.     |.+++..+   ...-.+..+.+++
T Consensus         6 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~E~~~l~~l~h-----pnIv~l~~---~~~~~~~~~ivmE   77 (253)
T cd05122           6 EKIGKGAFGTVYKARHKKTGELVAVKVIKLESDEEQEQILNEIQILKKCKH-----PNIVKYYG---SYLKKDELWIVME   77 (253)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEE
T ss_conf             797138781999999999998999999744745689999999999986799-----89991999---9998999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|.++...           +.+-    ..++        ....            ......+...+..+.+       
T Consensus        78 ~~~gg~L~~~-----------l~~~----~~l~--------e~~~------------~~~~~qi~~al~~lH~-------  115 (253)
T cd05122          78 YCDGGSLDDL-----------LKST----GPLP--------ESQI------------AYICREVLQGLEYLHS-------  115 (253)
T ss_pred             CCCCCCHHHH-----------HHHC----CCCC--------HHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             8899998999-----------9755----9999--------9999------------9999999999999998-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|.|+.|+|||++.+...-++||+.|.
T Consensus       116 ~~ivHRDlKp~Nill~~~g~vKl~DFGla~  145 (253)
T cd05122         116 NGIIHRDIKPANILLTSDGEVKLADFGVSA  145 (253)
T ss_pred             CCEECCCCCHHHEEECCCCCEEEEECCCEE
T ss_conf             893406577888899899988992437126


No 117
>cd05118 STKc_CMGC The catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. 
Probab=97.66  E-value=0.00034  Score=46.77  Aligned_cols=137  Identities=19%  Similarity=0.248  Sum_probs=74.1

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC-CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             100466812001799943-99-58999821669-98---89999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM-NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~-~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|++... .| .|.+|+...+. +.   .....|+++|..|..     |.+|+-.+   +...++..+.
T Consensus         4 i~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~l   75 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNH-----PNIIKLLD---VFRHKGDLYL   75 (283)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE
T ss_conf             689422669499999988999899999983345395889999999999986799-----89893999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|...     .          .+......++        ....            ......+...+..+.+    
T Consensus        76 vmEy~~~~l~-----~----------~l~~~~~~l~--------e~~~------------~~~~~qil~al~yLH~----  116 (283)
T cd05118          76 VFEFMDTDLY-----K----------LIKDRQRGLP--------ESLI------------KSYLYQLLQGLAFCHS----  116 (283)
T ss_pred             EEECCCCCHH-----H----------HHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             9817788657-----9----------9997289989--------9999------------9999999999999997----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .|+||.|+.|.|||++.+...-|+||+.|.
T Consensus       117 ---~~IiHRDlKPeNILl~~~~~iKl~DFG~a~  146 (283)
T cd05118         117 ---HGILHRDLKPENLLINTEGVLKLADFGLAR  146 (283)
T ss_pred             ---CCEEECCCCHHHEEECCCCCEEEEEECCCE
T ss_conf             ---996604376566689899988998404562


No 118
>COG4857 Predicted kinase [General function prediction only]
Probab=97.66  E-value=0.00015  Score=49.07  Aligned_cols=45  Identities=24%  Similarity=0.508  Sum_probs=38.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH-HHHH
Q ss_conf             744402234642256279604873162135680001989999-8643
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI-NAWC  229 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i-~~~c  229 (316)
                      ..+||||+|.+-|++.+.+.. |||=+++-|||..||++..+ |-|.
T Consensus       228 etLiHGDLHsGSIfvte~etk-vIDPEFaFYGPmafDiG~~iaNl~~  273 (408)
T COG4857         228 ETLIHGDLHSGSIFVTEKETK-VIDPEFAFYGPMAFDIGMLIANLWM  273 (408)
T ss_pred             HHHHCCCCCCCCEEEECCCCE-EECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             777606655671775047634-4274110037403239899999999


No 119
>cd06659 STKc_PAK6 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase
Probab=97.66  E-value=0.0021  Score=41.66  Aligned_cols=136  Identities=15%  Similarity=0.295  Sum_probs=75.8

Q ss_pred             EEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             3100466812001799943-99-5899982166--998899999999999853267755510010267787522451557
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      .++.|..|.--+.|+..-. +| .|.+|+...+  ...+.+..|+++|..|...+     +++-.+   ....++..+.+
T Consensus        25 ~~~~iG~G~fg~V~~a~~k~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-----Iv~l~~---~~~~~~~~~iv   96 (297)
T cd06659          25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQN-----VVEMYK---SYLVGEELWVL   96 (297)
T ss_pred             CCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCEEEE---EEEECCEEEEE
T ss_conf             1769603888299999989999899999986055204899999999999779989-----991999---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|..+.           ..+.+.     .++        .....            .....+...+..+.+     
T Consensus        97 mEy~~gg~L~-----------~~~~~~-----~l~--------e~~~~------------~i~~qil~aL~ylH~-----  135 (297)
T cd06659          97 MEFLQGGALT-----------DIVSQT-----RLN--------EEQIA------------TVCESVLQALCYLHS-----  135 (297)
T ss_pred             EECCCCCCHH-----------HHHHCC-----CCC--------HHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf             9678989389-----------998728-----999--------99999------------999999999999997-----


Q ss_pred             CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             7774440223464225627-9604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                        +++||.|+.|.|||++. +.+. ++||+.|.
T Consensus       136 --~~IiHRDlKp~NILl~~~g~vK-l~DFG~a~  165 (297)
T cd06659         136 --QGVIHRDIKSDSILLTLDGRVK-LSDFGFCA  165 (297)
T ss_pred             --CCEEECCCCCHHEEECCCCCEE-EEECCCCE
T ss_conf             --8966466870007998999899-99657844


No 120
>cd07832 STKc_CCRK The catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase subfamily. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the deve
Probab=97.65  E-value=0.0015  Score=42.61  Aligned_cols=136  Identities=16%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             EECCCCCEEEEEEEEEC-CCC-EEEEEECCCC--C--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             00466812001799943-995-8999821669--9--8899999999999853267755510010267787522451557
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KGT-FILTIYEKRM--N--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +-|..|.--..|.+... +|+ +.+|+.....  .  ...+-.|+.+|..|..     |.+++..+   ....++..+.+
T Consensus         6 ~~iG~G~fg~V~~~~d~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~~l~~l~h-----pnIi~~~~---~~~~~~~~~iV   77 (286)
T cd07832           6 GRIGEGAHGIVFKAKHLETGETVALKKIHLRRLEGGIPNAALREIKALQACQH-----PNIVKLLD---VFPHGSGFVLV   77 (286)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEE
T ss_conf             28632508499999988999899999981334484789999999999986799-----99892999---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      +++++|. +           -..+   ......++        ...            -......+...+..+.+     
T Consensus        78 mE~~~~~-L-----------~~~l---~~~~~~~~--------~~~------------i~~~~~qil~aL~yLH~-----  117 (286)
T cd07832          78 MEYMPSD-L-----------SEVL---RDSERPLP--------EAQ------------VKSYMRMLLKGLAHMHA-----  117 (286)
T ss_pred             EECCCCC-H-----------HHHH---HHCCCCCC--------HHH------------HHHHHHHHHHHHHHHHH-----
T ss_conf             8489998-8-----------9999---86599989--------999------------99999999999999998-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        .|+||.|+.|+|||++++...-++||+.|.
T Consensus       118 --~~IiHrDiKPeNIll~~~~~vKL~DFG~a~  147 (286)
T cd07832         118 --LGIMHRDLKPANLLISADGVLKIADFGLAR  147 (286)
T ss_pred             --CCEEECCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             --995777587687798699988980166451


No 121
>cd05598 STKc_LATS STKc_LATS: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=97.64  E-value=0.0026  Score=41.10  Aligned_cols=136  Identities=15%  Similarity=0.163  Sum_probs=71.5

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             10046681200179994-3995-899982166--9988---999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.- ..|+ |.+|+..+.  ....   .+..|.++|..+.     .|.+++-..   ..+-.+..+
T Consensus         6 ik~iG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~ly   77 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEAD-----NEWVVKLYY---SFQDKDNLY   77 (376)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEE
T ss_conf             879823888199999989999899999982688027679999999999998689-----998894999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+   .+. ..++        .....            ....++...+..+.    
T Consensus        78 lvmEy~~gGdL~-----------~~l---~~~-~~~~--------e~~a~------------~~~~qi~~aL~ylH----  118 (376)
T cd05598          78 FVMDYIPGGDMM-----------SLL---IRL-GIFE--------EDLAR------------FYIAELTCAIESVH----  118 (376)
T ss_pred             EEEECCCCCCHH-----------HHH---HHC-CCCC--------HHHHH------------HHHHHHHHHHHHHH----
T ss_conf             999647997089-----------999---873-9999--------99999------------99999999999997----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             107774440223464225627960487316213
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                         .+|+||.|+.|.|||++.+...-++||+.|
T Consensus       119 ---~~giiHRDlKPeNILl~~~g~iKL~DFGla  148 (376)
T cd05598         119 ---KMGFIHRDIKPDNILIDRDGHIKLTDFGLC  148 (376)
T ss_pred             ---HCCEEECCCCHHEEEECCCCCEEEEECCCC
T ss_conf             ---376776555500168889998899725886


No 122
>KOG1235 consensus
Probab=97.63  E-value=0.0003  Score=47.17  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=25.0

Q ss_pred             CCCCEEECCCCCCCEEECC----CCCEEEECCCCCCC
Q ss_conf             7774440223464225627----96048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYN----NKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~----~~i~giIDF~~~~~  214 (316)
                      +..|++|+|-||+|+++..    +.-..+.||+-...
T Consensus       318 f~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235         318 FKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             HHCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCC
T ss_conf             8539715799987378712789985489983445134


No 123
>cd07853 STKc_NLK The catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase subfamily. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate
Probab=97.61  E-value=0.00086  Score=44.17  Aligned_cols=140  Identities=16%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECC----CCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCE
Q ss_conf             10046681200179994-399-589998216----69988999999999998532677-555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEK----RMNEKDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~----~~~~~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|.+.. .+| .+.+|...+    ......+-.|+++|..|...+|- .-..+.+.+...+    ...+
T Consensus         5 ir~IG~G~fG~Vy~a~d~~tg~~VAiKki~~~~~~~~~~~~~~rEi~iL~~l~H~NIv~~~~v~~~~~~~~~----~~iy   80 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPF----EEIY   80 (372)
T ss_pred             EEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC----EEEE
T ss_conf             046303768399999978999899999989300386889999999999986799898918999951787762----2799


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .++++++|.                   ||.....-     ..+.....            ......+...+..+.+   
T Consensus        81 iv~el~~~d-------------------L~~~i~~~-----~~l~~~~i------------~~i~~Qil~aL~ylHs---  121 (372)
T cd07853          81 VVTELMQSD-------------------LHKIIVSP-----QPLSSDHV------------KVFLYQILRGLKYLHS---  121 (372)
T ss_pred             EEEECCCCC-------------------HHHHHHHC-----CCCCHHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             998158975-------------------89999746-----99999999------------9999999999999975---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          .|+||.|+.|.|+|++.+...-|+||+.|.
T Consensus       122 ----~~IiHRDLKP~NILl~~~~~lKI~DFGlAr  151 (372)
T cd07853         122 ----AGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             ----CCCEECCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             ----991527787798688789988972225553


No 124
>cd06649 PKc_MEK2 MEK2 (MAPKK2 or MKK2): Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase 
Probab=97.60  E-value=0.0053  Score=39.06  Aligned_cols=138  Identities=17%  Similarity=0.241  Sum_probs=72.8

Q ss_pred             EEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             3100466812001799943-995-899982166998---89999999999985326775551001026778752245155
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      -++.|..|.--+.|++... +|+ +.+|+.......   ..+-.|+.+|..+..     |.+++-.+   ...-.+..+.
T Consensus         9 ~i~~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~rE~~il~~l~h-----pnIV~~~~---~~~~~~~~~i   80 (331)
T cd06649           9 RISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNS-----PYIVGFYG---AFYSDGEISI   80 (331)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEE
T ss_conf             813861289949999998899949999996543087899999999999986799-----89995999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++.           +.+.+    ...++        ..    ...        .....+...+..+..    
T Consensus        81 vmEy~~gg~L~-----------~~l~~----~~~~~--------e~----~~~--------~i~~qil~gL~yLH~----  121 (331)
T cd06649          81 CMEHMDGGSLD-----------QVLKE----AKRIP--------EE----ILG--------KVSIAVLRGLAYLRE----  121 (331)
T ss_pred             EEECCCCCCHH-----------HHHHH----CCCCC--------HH----HHH--------HHHHHHHHHHHHHHH----
T ss_conf             99838999689-----------99986----49999--------99----999--------999999999999985----


Q ss_pred             CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             077744402234642256279-604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                        ..++||.|+.|.|||++.+ .+. ++||+.|.
T Consensus       122 --~~~IiHRDiKP~NILl~~~g~vK-L~DFGla~  152 (331)
T cd06649         122 --KHQIMHRDVKPSNILVNSRGEIK-LCDFGVSG  152 (331)
T ss_pred             --CCCEEECCCCCCCEEECCCCCEE-EEECCCCC
T ss_conf             --39886535661106898999999-95679876


No 125
>cd05577 STKc_GRK STKc_GRK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diver
Probab=97.60  E-value=0.0011  Score=43.35  Aligned_cols=133  Identities=16%  Similarity=0.176  Sum_probs=67.5

Q ss_pred             CCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             6812001799943-99-5899982166-9988----99999999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQTS-KG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|++... +| .|.+|+..+. ....    ..-.|..+|..+.     .|.+++...   ..+..+..+.+++|
T Consensus         3 ~G~fg~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~-----~p~iv~~~~---~~~~~~~~~~vme~   74 (277)
T cd05577           3 KGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKIILEKVS-----SPFIVSLAY---AFETKDALCLVLTL   74 (277)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEEEEE
T ss_conf             6748699999998999899999984788030567999999999998779-----998993989---99989989999996


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+.           ..+.+.+  ...++        .....            .....+...+..+.+       +
T Consensus        75 ~~ggdL~-----------~~l~~~~--~~~l~--------e~~~~------------~~~~ql~~al~ylH~-------~  114 (277)
T cd05577          75 MNGGDLK-----------FHIYNVG--NPGFD--------EARAR------------FYAAEIICGLEHLHR-------R  114 (277)
T ss_pred             CCCCCHH-----------HHHHHCC--CCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------C
T ss_conf             5798389-----------9998638--99989--------99999------------999999999999987-------8


Q ss_pred             CEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             4440223464225627-9604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      |+||.|+.|.|+|+++ +.+ -|+||+.|.
T Consensus       115 ~IiHRDiKp~NiLl~~~g~i-Kl~DFGla~  143 (277)
T cd05577         115 RIVYRDLKPENILLDDHGHI-RISDLGLAV  143 (277)
T ss_pred             CEEECCCCCCCCCCCCCCCE-EEEECCEEE
T ss_conf             92506668644130689978-972668147


No 126
>cd07840 STKc_CDK9_like The catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RN
Probab=97.60  E-value=0.0016  Score=42.42  Aligned_cols=139  Identities=17%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             10046681200179994-3995-8999821669988----9999999999985326775551001026778752245155
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.|..|.--+.|.+.. ..|+ |.+|+........    ....|+++|..|..     |.+++-.+ -......+..+.
T Consensus         4 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIi~~~~-~~~~~~~~~~~i   77 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRH-----PNIVRLKE-IVTSKGKGSIYM   77 (287)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEEEE
T ss_conf             899732869299999988999899999983001540668999999999997799-----89763678-999669987999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|.+|. +           ...+   ..  .+.+      .......            .....+...+..+.+    
T Consensus        78 v~E~~~~d-L-----------~~~l---~~--~~~~------~~~~~~~------------~~~~qll~al~ylH~----  118 (287)
T cd07840          78 VFEYMDHD-L-----------TGLL---DS--PEVK------FTESQIK------------CYMKQLLEGLQYLHS----  118 (287)
T ss_pred             EEECCCCC-H-----------HHHH---HH--CCCC------CCHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             99268987-8-----------9999---82--6899------8999999------------999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +++||.|+.|.|||++++...-++||+.|.
T Consensus       119 ---~~iiHRDlKp~NILl~~~~~vKl~DFG~a~  148 (287)
T cd07840         119 ---NGILHRDIKGSNILINNDGVLKIADFGLAR  148 (287)
T ss_pred             ---CCEEEEECCHHHEEECCCCCEEEEECCCCE
T ss_conf             ---997753367788478899998983679873


No 127
>cd06615 PKc_MEK MEK1/2 (MAPK kinase 1/2, MAPKK1/2 or MKK1/2): Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, extracellul
Probab=97.60  E-value=0.0036  Score=40.12  Aligned_cols=139  Identities=14%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             EEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             3100466812001799943-995-899982166998---89999999999985326775551001026778752245155
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      -++.|..|.--+.|++... +|+ +.+|+.......   ..+..|+.+|..+..     |.+++-.+   .....+..+.
T Consensus         5 ~i~~iG~G~fg~V~~a~~~~t~~~~A~K~i~~~~~~~~~~~~~~Ei~il~~~~h-----pnIv~l~~---~~~~~~~~~i   76 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNS-----PYIVGFYG---AFYSDGEISI   76 (308)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEE
T ss_conf             967861188929999998899969999998655198999999999999986799-----99990999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.     .      .+.+.    ..++        ..    ..        ......+...+..+.+    
T Consensus        77 vmEy~~gg~L~-----~------~l~~~----~~l~--------e~----~~--------~~i~~qil~~L~ylH~----  117 (308)
T cd06615          77 CMEHMDGGSLD-----Q------VLKKA----GRIP--------EN----IL--------GKISIAVLRGLTYLRE----  117 (308)
T ss_pred             EEECCCCCCHH-----H------HHHHC----CCCC--------HH----HH--------HHHHHHHHHHHHHHHH----
T ss_conf             99737998099-----9------99764----9999--------99----99--------9999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        ..++||.|+.|.|||++.+...-+.||+.|.
T Consensus       118 --~~~IiHRDiKP~NILl~~~g~vKl~DFGls~  148 (308)
T cd06615         118 --KHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  148 (308)
T ss_pred             --HCCEEEEECCCCCEEECCCCCEEEEEECCCE
T ss_conf             --1998753346122789799999998603330


No 128
>cd05123 STKc_AGC STKc_AGC: Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required o
Probab=97.60  E-value=0.0014  Score=42.80  Aligned_cols=131  Identities=18%  Similarity=0.296  Sum_probs=68.1

Q ss_pred             CCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             6812001799943-99-5899982166--9988999---99999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|.+.-. +| .+.+|+..+.  .+.+.+.   .|+++|..|.     .|.+++-.+   .....+..+.+++|
T Consensus         3 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~-----hpnIv~l~~---~~~~~~~~~ivmE~   74 (250)
T cd05123           3 KGSFGKVYLVRKKDTGKLYAMKVLKKKKILKRNEVEHTLNERDILSRVD-----HPFIVKLHY---AFQTKEKLYLVMEY   74 (250)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCCCCC---EEEECCEEEEEEEC
T ss_conf             6858499999998999799999984677559899999999999999779-----989986332---26359989999948


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..           .+.+-            ..+......            .....+...+..+.+       +
T Consensus        75 ~~gg~L~~-----------~l~~~------------~~l~~~~~~------------~~~~ql~~gl~~lH~-------~  112 (250)
T cd05123          75 VNGGDLFT-----------HLSKE------------GRFDEERAR------------FYAAEIVLALEYLHS-------L  112 (250)
T ss_pred             CCCCCHHH-----------HHHHC------------CCCCHHHHH------------HHHHHHHHHHHHHHH-------C
T ss_conf             99994899-----------99875------------998999999------------999999999999998-------9


Q ss_pred             CEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             44402234642256279-604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                      |+||.|+.|.|||++++ .+. ++||+.|.
T Consensus       113 ~iiHrDIKp~NILi~~~g~vk-l~DFGla~  141 (250)
T cd05123         113 GIIYRDLKPENILLDADGHIK-LTDFGLAK  141 (250)
T ss_pred             CEEEEECCHHHCCCCCCCCEE-EEECCCCE
T ss_conf             978602567756566899989-83745225


No 129
>cd05082 PTKc_Csk Catalytic Domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=97.60  E-value=0.0016  Score=42.47  Aligned_cols=148  Identities=12%  Similarity=0.130  Sum_probs=82.3

Q ss_pred             EEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             10046681200179994399589998216699889999999999985326775551001026778752245155786478
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK  106 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~  106 (316)
                      .+.|..|.--+.|+......+..+|++.+....+....|+.+|..|...+|     ++-. |- ...-.+..+.+++|++
T Consensus        11 ~~~iG~G~fg~V~~~~~~g~~vAvK~i~~~~~~~~f~~E~~~l~~l~HpnI-----v~~~-g~-~~~~~~~~~iv~Ey~~   83 (256)
T cd05082          11 LQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNL-----VQLL-GV-IVEEKGGLYIVTEYMA   83 (256)
T ss_pred             EEEEEECCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC-----CEEE-EE-EEECCCEEEEEEECCC
T ss_conf             459820898389999989939999997873059999999999985799898-----8099-99-9937982999997489


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             87076899899999999864367530687543323112456457667520015522788999999988876521077744
Q gi|254780795|r  107 GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGI  186 (316)
Q Consensus       107 G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~  186 (316)
                      |.++..              .|+.....       ..   .+...         -.....+...+..+..       .++
T Consensus        84 ~gsL~~--------------~l~~~~~~-------~~---~~~~~---------~~i~~~ia~gl~yLH~-------~~i  123 (256)
T cd05082          84 KGSLVD--------------YLRSRGRS-------VL---GGDCL---------LKFSLDVCEAMEYLEA-------NNF  123 (256)
T ss_pred             CCCHHH--------------HHHHCCCC-------CC---CHHHH---------HHHHHHHHHHHHHHHH-------CCC
T ss_conf             997899--------------88656997-------79---99999---------9999999999999973-------993


Q ss_pred             EECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCH
Q ss_conf             40223464225627960487316213568000198
Q gi|254780795|r  187 IHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDL  221 (316)
Q Consensus       187 IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DL  221 (316)
                      ||+|+.+.|||++.+...-|.||+.+.......+.
T Consensus       124 iHrDlK~~NiLv~~~~~~Kl~DFGls~~~~~~~~~  158 (256)
T cd05082         124 VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT  158 (256)
T ss_pred             CCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf             77757762288989992898005777077777876


No 130
>pfam00069 Pkinase Protein kinase domain.
Probab=97.60  E-value=0.00087  Score=44.14  Aligned_cols=137  Identities=21%  Similarity=0.269  Sum_probs=74.2

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             00466812001799943-99-5899982166-9988---99999999999853267755510010267787522451557
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.|..|.--+.|+.... +| .+.+|+.... .+..   .+..|+.+|..|..     |.+++-.+   +..-.+..+.+
T Consensus         5 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~iv   76 (260)
T pfam00069         5 RKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSH-----PNIVRLID---AFEDKDHLYLV   76 (260)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE
T ss_conf             99732889399999999999899999983332895899999999999996799-----89992999---99989999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..           .+   .+. ..+        .....            ......+...+..+.+     
T Consensus        77 mEy~~gg~L~~-----------~l---~~~-~~l--------~~~~~------------~~~~~qi~~al~ylH~-----  116 (260)
T pfam00069        77 MEYCEGGDLFD-----------YL---SRG-GPL--------SEDEA------------KKIALQILRGLEYLHS-----  116 (260)
T ss_pred             EECCCCCCHHH-----------HH---HHC-CCC--------CHHHH------------HHHHHHHHHHHHHHHH-----
T ss_conf             97889981899-----------99---867-999--------99999------------9999999999999998-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             777444022346422562796048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                        +|+||.|+.|.|||++.+...-++||+.|..
T Consensus       117 --~~iiHRDiKp~NILl~~~~~~Kl~DFGla~~  147 (260)
T pfam00069       117 --NGIIHRDLKPENILLDENGVVKIADFGLAKK  147 (260)
T ss_pred             --CCCEECCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             --8945132678997987999899985888646


No 131
>cd06638 STKc_myosinIIIA Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures.
Probab=97.60  E-value=0.0025  Score=41.21  Aligned_cols=145  Identities=15%  Similarity=0.224  Sum_probs=76.4

Q ss_pred             EEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHCCCCE
Q ss_conf             310046681200179994-399-5899982166-998899999999999853267755510010267787---5224515
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG---FLCKKPA   99 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~---~~~~k~~   99 (316)
                      -.+.|..|.--+.|+..- .+| +|.+|+.... ...+++..|.++|..|..+    |.+++-. |..+.   .-.++.+
T Consensus        22 i~~~iG~G~fg~Vy~a~~~~~g~~vAiK~i~~~~~~~~~~~~E~~il~~l~~H----pnIv~~~-~~~~~~~~~~~~~~~   96 (286)
T cd06638          22 IIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDH----PNVVKFY-GMYYKKDVKNGDQLW   96 (286)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHCCC----CCCCEEE-EEEEECCCCCCCEEE
T ss_conf             86598226383999999758998999999890116589999999999974599----9978499-999652656598899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..           .+..+-.....++        ....            ......+...+..+..   
T Consensus        97 ivmE~~~gg~L~d-----------l~~~~~~~~~~~~--------e~~~------------~~i~~qil~aL~ylH~---  142 (286)
T cd06638          97 LVLELCNGGSVTD-----------LVKGFLKRGERME--------EPII------------AYILHEALMGLQHLHV---  142 (286)
T ss_pred             EEEECCCCCCHHH-----------HHHHHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9997689988999-----------9999886078899--------9999------------9999999999999998---


Q ss_pred             HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             1077744402234642256279-6048731621356
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                          .++||.|+.|.|||++.+ .+. |+||+.|..
T Consensus       143 ----~~iiHRDiKp~NILl~~~~~vK-l~DFGla~~  173 (286)
T cd06638         143 ----NKTIHRDVKGNNILLTTEGGVK-LVDFGVSAQ  173 (286)
T ss_pred             ----CCCEEEECCHHHEEECCCCCEE-EEECCCCEE
T ss_conf             ----8954202667887886899879-962676337


No 132
>cd06626 STKc_MEKK4 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs,
Probab=97.59  E-value=0.0012  Score=43.20  Aligned_cols=134  Identities=16%  Similarity=0.264  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             46681200179994-399-5899982166-9988---9999999999985326775551001026778752245155786
Q gi|254780795|r   30 IIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        30 i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      |..|.--+.|+... .+| .|.+|++... .+..   .+..|+.+|..|+.     |.+++-.+   +...++..+.+++
T Consensus         8 lG~G~~g~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~lvmE   79 (264)
T cd06626           8 IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKH-----PNLVKYYG---VEVHREKVYIFME   79 (264)
T ss_pred             EECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEE
T ss_conf             821748199999988999899999981000897999999999999987799-----89894999---9988999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+..           .+   +. ...++        ....            ......+...+..+.+       
T Consensus        80 ~~~~g~L~~-----------~l---~~-~~~~~--------e~~~------------~~~~~qi~~al~ylH~-------  117 (264)
T cd06626          80 YCSGGTLEE-----------LL---EH-GRILD--------EHVI------------RVYTLQLLEGLAYLHS-------  117 (264)
T ss_pred             CCCCCCHHH-----------HH---HH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             899996999-----------99---70-79999--------9999------------9999999999999998-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|+|||++.+...-|.||+.|.
T Consensus       118 ~~iiHRDlKp~NILl~~~~~vKl~DFG~a~  147 (264)
T cd06626         118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAV  147 (264)
T ss_pred             CCEEECCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             994537557899568899969995476745


No 133
>cd07845 STKc_CDK10 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. C
Probab=97.59  E-value=0.0012  Score=43.17  Aligned_cols=141  Identities=18%  Similarity=0.218  Sum_probs=72.7

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             5310046681200179994-399-58999821669988----99999999999853267755510010267787522451
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      .-++.|..|.--+.|.+.. .+| .|.+|+........    ..-.|+.+|..|..     |.+++-.+ -....-.+..
T Consensus        10 ~~~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H-----pnIv~l~~-~~~~~~~~~~   83 (309)
T cd07845          10 EKLNRIGEGTYGIVYRARDTRSGEIVALKKVRMDRERDGIPISSLREITLLLNLRH-----PNIVELKE-VVVGKHLDSI   83 (309)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-----CCCCEEEE-EEECCCCCEE
T ss_conf             65689524728199999988999799999981100431557889999999986689-----98120688-9943888879


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.            ++..+-+.   ...|+        ....            ......+...++.+.+  
T Consensus        84 ~lvmE~~~~~------------L~~~l~~~---~~~l~--------e~~i------------~~i~~Qll~al~yLH~--  126 (309)
T cd07845          84 FLVMEYCEQD------------LASLLDNM---PTPFS--------ESQV------------KCLMLQLLRGLQYLHE--  126 (309)
T ss_pred             EEEEECCCCC------------HHHHHHHC---CCCCC--------HHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             9999548988------------79999856---89999--------9999------------9999999999999987--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +|+||.|+.|.|||++++...-++||+.|.
T Consensus       127 -----~~IiHRDiKPeNILl~~~~~vKl~DFGla~  156 (309)
T cd07845         127 -----NFIIHRDLKVSNLLLTDKGCLKIADFGLAR  156 (309)
T ss_pred             -----CCCEECCCCHHHEEECCCCCEEEEECCCHH
T ss_conf             -----894668688233678799988997423122


No 134
>cd07863 STKc_CDK4 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiqu
Probab=97.58  E-value=0.00094  Score=43.92  Aligned_cols=144  Identities=21%  Similarity=0.252  Sum_probs=72.3

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHCCCC
Q ss_conf             10046681200179994-3995-8999821669988----9999999999985326775551001026--7787522451
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDG--KLYGFLCKKP   98 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G--~~~~~~~~k~   98 (316)
                      ++.|..|.--+.|++.- ++|+ +.+|+........    ..-.++..|..|.+  +.-|..++..+=  ..-..-....
T Consensus         5 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~~--~~Hpniv~~~~~~~~~~~~~~~~~   82 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEA--FDHPNIVRLMDVCATSRTDRETKV   82 (288)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEEEEECCCCCCCEE
T ss_conf             348412308599999988999799999983200443447999999999998755--689998989777620355776269


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.++++++|. +        +   ..+.++.  ..+++        .....            .....+...++.+.+  
T Consensus        83 ~lv~e~~~~~-l--------~---~~~~~~~--~~~~~--------~~~i~------------~~~~qil~aL~ylH~--  126 (288)
T cd07863          83 TLVFEHVDQD-L--------R---TYLDKVP--PPGLP--------AETIK------------DLMRQFLRGLDFLHA--  126 (288)
T ss_pred             EEEEECCCCC-H--------H---HHHHHCC--CCCCC--------HHHHH------------HHHHHHHHHHHHHHH--
T ss_conf             9999627986-8--------9---9998456--89999--------99999------------999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             2107774440223464225627-96048731621356
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                           .|+||.|+.|+|||++. +.+. ++||+.|..
T Consensus       127 -----~~IiHRDiKp~NIll~~~~~vk-l~DFG~a~~  157 (288)
T cd07863         127 -----NCIVHRDLKPENILVTSGGQVK-LADFGLARI  157 (288)
T ss_pred             -----CCEEECCCCHHHEEECCCCCEE-EEECCCCCC
T ss_conf             -----8906775661120466899689-843360010


No 135
>cd05059 PTKc_Tec_like Catalytic Domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=97.57  E-value=0.0027  Score=40.98  Aligned_cols=141  Identities=15%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             05310046681200179994399-5899982166-998899999999999853267755510010267787522451557
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.-.+.|..|.--+.|+.....+ +..+|+.... .+.+++-.|+++|..|..     |.+++-- |  +..-.+..+.+
T Consensus         6 ~~~~~~iG~G~fg~V~~~~~~~~~~vAvK~l~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g--~~~~~~~~~lv   77 (256)
T cd05059           6 LTFLKELGSGQFGVVRLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSH-----PNLVQLY-G--VCTKQRPIFIV   77 (256)
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEE
T ss_conf             69845970488869999998799899999988677898999999999985899-----8881599-9--99889988999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..     .         |+....        .......            -.+...+...+..+.+     
T Consensus        78 mEy~~~G~L~~-----~---------l~~~~~--------~~~~~~~------------~~i~~~ia~gl~yLH~-----  118 (256)
T cd05059          78 TEYMANGCLLN-----F---------LRQRRG--------KFGTEWL------------LDMCSDVCEAMEYLES-----  118 (256)
T ss_pred             EEECCCCCHHH-----H---------HHHCCC--------CCCHHHH------------HHHHHHHHHHHHHHHH-----
T ss_conf             97069897999-----9---------986689--------9999999------------9999999999999987-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        ++++|+|+.+.|||++++...-|.||+.+.
T Consensus       119 --~~ivHrDlK~~NiLl~~~~~~Ki~DFGls~  148 (256)
T cd05059         119 --NSFIHRDLAARNCLVGEDNVVKVSDFGLAR  148 (256)
T ss_pred             --CCEECCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             --991678678063899999979998667642


No 136
>cd05571 STKc_PKB STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis.
Probab=97.57  E-value=0.0018  Score=42.11  Aligned_cols=134  Identities=13%  Similarity=0.203  Sum_probs=68.5

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-5899982166--9988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... +| .|.+|+..+.  ...+++.   .|.++|..+.     -|.+++-..   ...-.++.+.+++
T Consensus         4 G~G~fG~V~l~~~k~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~l~-----Hp~Iv~l~~---~f~~~~~lylVmE   75 (323)
T cd05571           4 GKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTR-----HPFLTALKY---SFQTHDRLCFVME   75 (323)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEEEE
T ss_conf             20729399999988999899999983688649799999999999998679-----998895999---9998999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+.+. ..++        .....            .....+...+..+.+       
T Consensus        76 y~~gGdL~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~-------  113 (323)
T cd05571          76 YANGGELF--------------FHLSRE-RVFS--------EDRAR------------FYGAEIVSALGYLHS-------  113 (323)
T ss_pred             CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             35998699--------------999874-9999--------99999------------999999999999997-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +++||.|+.|.|||++.+...-++||+.|..
T Consensus       114 ~~IiHRDLKPeNILl~~~g~iKL~DFGlak~  144 (323)
T cd05571         114 CDVVYRDLKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             CCCEEEEECCCCCCCCCCCCEEEEECCEEEE
T ss_conf             8926754044445424689788621215452


No 137
>cd07869 STKc_PFTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D
Probab=97.57  E-value=0.0034  Score=40.28  Aligned_cols=137  Identities=15%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             EEEECCCCCEEEEEEEEEC-CCC-EEEEEECCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             3100466812001799943-995-899982166---99889999999999985326775551001026778752245155
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTS-KGT-FILTIYEKR---MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~---~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      -++.|..|.--+.|+.... +|+ +.+|+....   ......-.|+.+|..|..     |.+++-.+   +..-.+..+.
T Consensus         9 ~~~~iG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~H-----pnIv~l~~---~~~~~~~~~l   80 (303)
T cd07869           9 KLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKH-----ANIVLLHD---IIHTKETLTL   80 (303)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHCCC-----CCEEEEEE---EECCCCEEEE
T ss_conf             801882387949999998899979999998344613468899999999986799-----89827988---8725985899


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|...        .    .+   .+....+        ......            .....+...+..+.+    
T Consensus        81 v~Ey~~~~l~--------~----~~---~~~~~~l--------~~~~~~------------~~~~qll~~l~ylH~----  121 (303)
T cd07869          81 VFEYVHTDLC--------Q----YM---DKHPGGL--------HPENVK------------LFLFQLLRGLSYIHQ----  121 (303)
T ss_pred             EEECCCCHHH--------H----HH---HHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             9963661389--------9----99---9656999--------999999------------999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             07774440223464225627-9604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                         +++||.|+.|.|||+++ +++. ++||+.|.
T Consensus       122 ---~~IiHRDlKp~NILl~~~~~vK-i~DFGla~  151 (303)
T cd07869         122 ---RYILHRDLKPQNLLISDTGELK-LADFGLAR  151 (303)
T ss_pred             ---CCCEEEECCHHHEEECCCCCEE-EEECCCCC
T ss_conf             ---8916866675657988999899-97746523


No 138
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=97.57  E-value=0.00073  Score=44.61  Aligned_cols=33  Identities=33%  Similarity=0.515  Sum_probs=26.7

Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             777444022346422562796048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +.-|+.|+|.||+|+++..+.-..++||+-++.
T Consensus       282 ~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~  314 (517)
T COG0661         282 LRDGFFHADPHPGNILVRSDGRIVLLDFGIVGR  314 (517)
T ss_pred             HHCCCCCCCCCCCCEEEECCCCEEEECCCCEEC
T ss_conf             965951359995005771589689975753013


No 139
>cd06605 PKc_MAPKK Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residu
Probab=97.57  E-value=0.0061  Score=38.66  Aligned_cols=142  Identities=17%  Similarity=0.235  Sum_probs=76.0

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             5310046681200179994-3995-89998216699889---99999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      .-++.|..|.--+.|++.. .+|+ +.+|+.....+...   +..|+.+|..|     .-|.+++-.+   .....+..+
T Consensus         4 ~~i~~iG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~Ei~~l~~l-----~HpnIv~~~~---~~~~~~~~~   75 (265)
T cd06605           4 ETLGELGAGNSGVVSKVRHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC-----NSPYIVGFYG---AFYNNGDIS   75 (265)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE
T ss_conf             89888111868099999998999899999984205989999999999999867-----9989890989---999899889


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..           .+.+.+   ..++        .....            .....+...+..+.+   
T Consensus        76 ivmEy~~~g~L~~-----------~~~~~~---~~~~--------e~~~~------------~i~~qi~~~l~ylH~---  118 (265)
T cd06605          76 ICMEYMDGGSLDK-----------ILKEVQ---GRIP--------ERILG------------KIAVAVLKGLTYLHE---  118 (265)
T ss_pred             EEEECCCCCCHHH-----------HHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             9992689986999-----------998748---9999--------99999------------999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             10777444022346422562796048731621356
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                         .+|+||.|+.|.|||++.+...-++||+.|..
T Consensus       119 ---~~~iiHRDiKp~NILl~~~g~iKl~DFG~s~~  150 (265)
T cd06605         119 ---KHKIIHRDVKPSNILVNSRGEIKLCDFGVSGQ  150 (265)
T ss_pred             ---CCCEEEEEECCCCCCCCCCCCEEECCCCCCEE
T ss_conf             ---09987321056552188999989843734224


No 140
>cd05599 STKc_NDR_like STKc_NDR_like: Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This su
Probab=97.57  E-value=0.0048  Score=39.30  Aligned_cols=137  Identities=17%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.-. .| .|.+|+..+.  .....   +..|.++|..+     ..|.+++-.+   ..+-.+..+
T Consensus         6 ik~lG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y   77 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA-----DNPWVVKLYY---SFQDENYLY   77 (364)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE
T ss_conf             37952287849999998899989999998468814778999999999999877-----9998893999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.              ..+.+. ..+        ......            .....+...+..+.    
T Consensus        78 lvmEy~~gGdL~--------------~~l~~~-~~l--------~e~~~~------------~~~~qi~~aL~ylH----  118 (364)
T cd05599          78 LIMEYLPGGDMM--------------TLLMKK-DTF--------TEEETR------------FYIAETILAIDSIH----  118 (364)
T ss_pred             EEEECCCCCCHH--------------HHHHHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH----
T ss_conf             998378897289--------------999865-999--------999999------------99999999999997----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .+++||.|+.|.|||++.+...-+.||+.|.
T Consensus       119 ---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~  149 (364)
T cd05599         119 ---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCT  149 (364)
T ss_pred             ---HCCEEECCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             ---5765400044233799799988997267772


No 141
>cd05084 PTKc_Fes Catalytic Domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular 
Probab=97.56  E-value=0.0041  Score=39.75  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             466812001799943-99-589998216699889---9999999999853267755510010267787522451557864
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      |..|.--+.|+.... ++ .+.+|.+......+.   +-.|+.+|..|.     -|.+++-. |  +..-.+..+.+++|
T Consensus         3 iG~G~fg~Vy~~~~~~~~~~vAiK~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~l~-g--~~~~~~~~~lv~Ey   74 (252)
T cd05084           3 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLMEARILKQYS-----HPNIVKLI-G--VCTQKQPIYIVMEL   74 (252)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCCCCEE-E--EEEECCEEEEEEEC
T ss_conf             7458882899999979996999999881169889999999999998579-----98997654-7--99889989999978


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..           .|   +..  +      ....   +...         -.+...+...+..+.+       +
T Consensus        75 ~~~G~L~~-----------~l---~~~--~------~~l~---~~~~---------~~i~~~ia~gl~yLH~-------~  113 (252)
T cd05084          75 VQGGDFLT-----------FL---RTE--G------PRLK---VKEL---------IRMAENAAAGMEYLES-------K  113 (252)
T ss_pred             CCCCCHHH-----------HH---HHC--C------CCCC---HHHH---------HHHHHHHHHHHHHHHH-------C
T ss_conf             99992899-----------99---842--8------9999---9999---------9999999999999987-------8


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++|+|+.+.|||++.+...-+.||+.+.
T Consensus       114 ~ivHrDlKp~NiLl~~~~~~kl~DFGla~  142 (252)
T cd05084         114 HCIHRDLAARNCLVTEKNVLKISDFGMSR  142 (252)
T ss_pred             CCCCCCCCHHHEEECCCCEEEEEECCCCE
T ss_conf             94468736542898799929995552560


No 142
>cd05617 STKc_aPKC_zeta STKc_aPKC_zeta: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeas
Probab=97.56  E-value=0.001  Score=43.65  Aligned_cols=136  Identities=19%  Similarity=0.261  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-5899982166--99889---99999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      |..|.--+.|++... +| .|.+|+..+.  .....   +..+..+|..+..+    |.+++-..   ..+-.++.+.++
T Consensus         3 LG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~h----p~Iv~l~~---~f~~~~~lylVm   75 (327)
T cd05617           3 IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSN----PFLVGLHS---CFQTTSRLFLVI   75 (327)
T ss_pred             EEECCCCEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECCEEEEEE
T ss_conf             41181909999998899979999998478875989999999999999970589----98747999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.              ..+.+ ...++        ....            ......+...+..+.+      
T Consensus        76 Ey~~gGdL~--------------~~l~~-~~~l~--------e~~a------------~~~~~qi~~aL~yLH~------  114 (327)
T cd05617          76 EYVNGGDLM--------------FHMQR-QRKLP--------EEHA------------RFYAAEICIALNFLHE------  114 (327)
T ss_pred             ECCCCCCHH--------------HHHHH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             588998399--------------99987-49999--------9999------------9999999999999983------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             77444022346422562796048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                       +|+||.|+.|.|||++.+...-++||+.|..
T Consensus       115 -~gIiHRDLKPeNILld~~g~iKL~DFGlak~  145 (327)
T cd05617         115 -RGIIYRDLKLDNVLLDADGHIKLTDYGMCKE  145 (327)
T ss_pred             -CEEEECCCCCCCEEECCCCCEEECCCCCCHH
T ss_conf             -9289375556660573699677323550110


No 143
>cd05629 STKc_NDR_like_fungal STKc_NDR_like_fungal: Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play s
Probab=97.55  E-value=0.0054  Score=38.99  Aligned_cols=136  Identities=21%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCC--CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-995-899982166--998899---9999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKR--MNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++... .|+ |.+|+..+.  .....+   ..+.++|..+     ..|.+++-.+   ...-.+..+
T Consensus         6 lk~lG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y   77 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAES-----DSPWVVSLYY---SFQDAQYLY   77 (377)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE
T ss_conf             27822285839999998899989999998468805889999999999999868-----9998794999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..           .+.+    ...++        .....            .....+...+..+.    
T Consensus        78 lvmEy~~ggdL~~-----------~l~~----~~~~~--------e~~~~------------~~~~qi~~al~~lH----  118 (377)
T cd05629          78 LIMEFLPGGDLMT-----------MLIK----YDTFS--------EDVTR------------FYMAECVLAIEAVH----  118 (377)
T ss_pred             EEEECCCCCCHHH-----------HHHH----CCCCC--------HHHHH------------HHHHHHHHHHHHHH----
T ss_conf             9995899974889-----------9986----49999--------99999------------99999999999987----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             107774440223464225627960487316213
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                         .+|+||.|+.|.|||++.+...-++||+.|
T Consensus       119 ---~~giiHRDlKPeNILl~~~g~iKL~DFGls  148 (377)
T cd05629         119 ---KLGFIHRDIKPDNILIDRGGHIKLSDFGLS  148 (377)
T ss_pred             ---HCEEEECCCCCCEEEECCCCCEEECCCCCC
T ss_conf             ---472896457655589879998898126676


No 144
>cd05614 STKc_MSK2_N STKc_MSK2_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the 
Probab=97.55  E-value=0.00082  Score=44.28  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=71.8

Q ss_pred             EECCCCCEEEEEEEEEC----CC-CEEEEEECCCC---CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             00466812001799943----99-58999821669---98---8999999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS----KG-TFILTIYEKRM---NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~----~~-~yiLri~e~~~---~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +.|..|.--+.|++.-.    .| .|.+|+..+..   ..   +....+.++|.++..+    |.++.-.   ....-++
T Consensus         6 k~LG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~~E~~il~~~~~~----p~iv~l~---~~f~~~~   78 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQS----PFLVTLH---YAFQTEA   78 (332)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE---EEEEECC
T ss_conf             79513888089999985307889589999981788422178999999999999962689----9778999---9998799


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      ..+.+++|++|..+.              ..+++. ..++        .....            .....+...+..+.+
T Consensus        79 ~~ylVmEy~~gG~L~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~  123 (332)
T cd05614          79 KLHLILDYVSGGEMF--------------THLYQR-DNFS--------EDEVR------------FYSGEIILALEHLHK  123 (332)
T ss_pred             EEEEEEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH
T ss_conf             899999677999899--------------999864-9999--------99999------------999999999999987


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             6521077744402234642256279-604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                             +|+||.|+.|.|||++.+ .+. ++||+.|.
T Consensus       124 -------~gIiHRDlKPeNILl~~~g~ik-L~DFGlak  153 (332)
T cd05614         124 -------LGIVYRDIKLENILLDSEGHVV-LTDFGLSK  153 (332)
T ss_pred             -------CCCEECCCCHHHEEECCCCCEE-EECCHHHH
T ss_conf             -------8865256766770035899889-60240136


No 145
>cd05626 STKc_LATS2 STKc_LATS2: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer.
Probab=97.54  E-value=0.0033  Score=40.41  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=72.9

Q ss_pred             EEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             310046681200179994-399-5899982166--99889---9999999999853267755510010267787522451
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      -++.|..|.--+.|++.- +.| .|.+|+..+.  .+...   +..|.++|..+..     |.+++-.+   ..+-.+..
T Consensus         5 ~ik~LG~G~fG~V~la~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~h-----p~Iv~l~~---~f~~~~~~   76 (381)
T cd05626           5 KIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADN-----EWVVKLYY---SFQDKDNL   76 (381)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEE
T ss_conf             97287138784999999889998899999806785598999999999999986899-----89794999---99989999


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|..+..              .+++. ..++        ....            .....++...+..+.   
T Consensus        77 ylvmEy~~gGdL~~--------------~l~~~-~~~~--------e~~a------------~~~~~qi~~aL~ylH---  118 (381)
T cd05626          77 YFVMDYIPGGDMMS--------------LLIRM-EVFP--------EVLA------------RFYIAELTLAIESVH---  118 (381)
T ss_pred             EEEEECCCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHH---
T ss_conf             99997479982878--------------77634-9999--------9999------------999999999999998---


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          ..|+||.|+.|.|||++.+...-++||+.|.
T Consensus       119 ----~~gIiHRDLKPeNILl~~~g~iKL~DFGla~  149 (381)
T cd05626         119 ----KMGFIHRDIKPDNILIDLDGHIKLTDFGLCT  149 (381)
T ss_pred             ----HCCCCCCCCCCCEEEECCCCCEEECCCCCCC
T ss_conf             ----6667302154673678899988981567653


No 146
>cd05618 STKc_aPKC_iota STKc_aPKC_iota: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been i
Probab=97.54  E-value=0.0021  Score=41.61  Aligned_cols=135  Identities=16%  Similarity=0.251  Sum_probs=69.5

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCC-C-CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-5899982166-9-9889---999999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKR-M-NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~-~-~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... +| .|.+|+..+. . ....   +..+..+|..+..+    |.+++-.+   ..+-.++.+.+++
T Consensus         4 G~G~fG~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~H----p~Iv~l~~---~f~~~~~lylVmE   76 (329)
T cd05618           4 GRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNH----PFLVGLHS---CFQTESRLFFVIE   76 (329)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCCCEEEE---EEEECCEEEEEEE
T ss_conf             0387939999999899989999998678877989999999999999971399----97795999---9998999999995


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+.+. ..++        .....            .....+...+..+.       .
T Consensus        77 y~~GGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~yLH-------~  114 (329)
T cd05618          77 YVNGGDLM--------------FHMQRQ-RKLP--------EEHAR------------FYSAEISLALNYLH-------E  114 (329)
T ss_pred             CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHH-------C
T ss_conf             88988989--------------999874-9999--------99999------------99999999999986-------3


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +|+||.|+.|.|||++.+...-++||+.|..
T Consensus       115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~  145 (329)
T cd05618         115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCEEECCCCCCCCCCCCCCCEEECCCHHHHH
T ss_conf             9689644572100315688566314005555


No 147
>cd06650 PKc_MEK1 MEK1 (MAPKK1 or MKK1):  Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase
Probab=97.54  E-value=0.005  Score=39.22  Aligned_cols=140  Identities=15%  Similarity=0.229  Sum_probs=72.6

Q ss_pred             EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             53100466812001799943-995-8999821669988---999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      .-++.|..|.--+.|++.-. +|+ +.+|+........   .+-.|+.+|..+.     -|.+++-.+   ....++..+
T Consensus         8 eii~~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~-----hpnIV~~~~---~~~~~~~~~   79 (333)
T cd06650           8 EKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECN-----SPYIVGFYG---AFYSDGEIS   79 (333)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCC-----CCCCCCEEE---EEEECCEEE
T ss_conf             880276038991999999889995999999765428789999999999998679-----999991989---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..           .+.+-    ..++        ..    ...        .....+...+..+..   
T Consensus        80 ivmEy~~gg~L~~-----------~l~~~----~~~~--------e~----~~~--------~i~~qi~~gL~ylH~---  121 (333)
T cd06650          80 ICMEHMDGGSLDQ-----------VLKKA----GRIP--------EQ----ILG--------KVSIAVIKGLTYLRE---  121 (333)
T ss_pred             EEEECCCCCCHHH-----------HHHHC----CCCC--------HH----HHH--------HHHHHHHHHHHHHHH---
T ss_conf             9998389997899-----------99754----9999--------99----999--------999999999999986---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         ..++||.|+.|.|||++++...-++||+.|.
T Consensus       122 ---~~~IiHRDIKP~NILi~~~g~vKL~DFGla~  152 (333)
T cd06650         122 ---KHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (333)
T ss_pred             ---HCCEEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             ---2887222466311799899989999788876


No 148
>cd05113 PTKc_Btk_Bmx Catalytic Domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds 
Probab=97.53  E-value=0.0018  Score=42.13  Aligned_cols=139  Identities=15%  Similarity=0.148  Sum_probs=76.4

Q ss_pred             EEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             310046681200179994399-5899982166-99889999999999985326775551001026778752245155786
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      -.+.|..|.--+.|+.....+ +..+|++++. ...+++-.|+++|..|..     |.++.-. |  ...-.+..+.+++
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~H-----pnIV~l~-g--~~~~~~~~~lv~E   79 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWQGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSH-----EKLVQLY-G--VCTKQRPIYIVTE   79 (256)
T ss_pred             EEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEEEEE
T ss_conf             806970287819999998799799999983588998999999999986799-----8976099-9--9988998999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+..           .   |+.....          +.+. ...         .....+...++.+.+       
T Consensus        80 y~~~G~L~~-----------~---l~~~~~~----------~~~~-~~~---------~~~~~ia~gl~yLH~-------  118 (256)
T cd05113          80 YLANGCLLN-----------Y---LREGLKR----------PTPS-QLL---------EMCKDVCEGMAYLES-------  118 (256)
T ss_pred             CCCCCCHHH-----------H---HHHCCCC----------CCHH-HHH---------HHHHHHHHHHHHHHH-------
T ss_conf             079998899-----------9---9854899----------9999-999---------999999999998705-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .++||+|+.+.|||++.+...-+.||+.+.
T Consensus       119 ~~iiHrDlK~~NiLid~~~~~Kl~DFGls~  148 (256)
T cd05113         119 KQFIHRDLAARNCLVDSNGTVKVSDFGLSR  148 (256)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             894316577276988899979996168851


No 149
>cd06616 PKc_MKK4 Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specif
Probab=97.53  E-value=0.0077  Score=38.00  Aligned_cols=147  Identities=19%  Similarity=0.228  Sum_probs=72.1

Q ss_pred             CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             6053100466812001799943-99-589998216699889---999999999985326775551001026778752245
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k   97 (316)
                      +...++.|..|.--+.|+.... +| .|.+|+........+   +..+.+.+..    ...+|.+++-.+   ....++.
T Consensus         5 d~~~l~~lG~G~fg~V~~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~e~~~l~~----~~~hpnIv~~~~---~~~~~~~   77 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMR----SSDCPYIVKFYG---ALFREGD   77 (288)
T ss_pred             HCEECCEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCE
T ss_conf             988832861387859999998899969999998801491899999999999998----369998888988---9987891


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.++++++|.            ++.....+|......       +..    ...        ......+...+..+.+ 
T Consensus        78 ~~ivme~~~~~------------l~~~~~~~~~~~~~~-------~~e----~~~--------~~~~~qi~~al~ylH~-  125 (288)
T cd06616          78 CWICMELMDIS------------LDKFYKYVYEVLKSV-------IPE----EIL--------GKIAVATVKALNYLKE-  125 (288)
T ss_pred             EEEEEEECCCC------------HHHHHHHHHHHCCCC-------CCH----HHH--------HHHHHHHHHHHHHHHH-
T ss_conf             79999982898------------899999998731689-------999----999--------9999999999999987-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             521077744402234642256279-6048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                           ..++||.|+.|.|||++++ .+. ++||+.|+.
T Consensus       126 -----~~~IiHRDlKp~NILl~~~~~iK-l~DFGla~~  157 (288)
T cd06616         126 -----ELKIIHRDVKPSNILLDRNGNIK-LCDFGISGQ  157 (288)
T ss_pred             -----CCCEECCCCCHHHEEECCCCCEE-EEECCCCCC
T ss_conf             -----28984166760113288999789-996888543


No 150
>cd07867 STKc_CDC2L6 The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, ca
Probab=97.53  E-value=0.00064  Score=44.99  Aligned_cols=143  Identities=17%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCCCCEEEEEEEEEC---C-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             466812001799943---9-958999821669988999999999998532677555100102677875224515578647
Q gi|254780795|r   30 IIHGVENSNFVIQTS---K-GTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        30 i~~G~~Ntny~v~t~---~-~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
                      |..|.--+.|.....   + ..|.+|+.+..........|+.+|..|...+     +++-.+ -....-++..+.+++|.
T Consensus         9 iG~G~fg~V~~~~~~d~~~~~~vAiK~i~~~~~~~~~~rEi~iL~~l~hpn-----iv~l~~-~~~~~~~~~~~lv~e~~   82 (317)
T cd07867           9 VGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPN-----VIALQK-VFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             EEECCCEEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCC-----CCCEEE-EEECCCCCEEEEEEECC
T ss_conf             511618099999971397377999999898777289999999998778989-----982889-99627997899999727


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88707689989999999986436753068754332311245645766752001552278899999998887652107774
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG  185 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g  185 (316)
                      +|.      ..++       -+.|.......  ++.......    .        ......+...+..+.+       .+
T Consensus        83 ~~~------l~~~-------i~~~~~~~~~~--~~~~l~~~~----i--------~~i~~qll~al~ylH~-------~~  128 (317)
T cd07867          83 EHD------LWHI-------IKFHRASKANK--KPMQLPRSM----V--------KSLLYQILDGIHYLHA-------NW  128 (317)
T ss_pred             CCC------HHHH-------HHHHHHHHHCC--CCCCCCHHH----H--------HHHHHHHHHHHHHHHH-------CC
T ss_conf             997------8999-------88622101025--766789999----9--------9999999999999987-------89


Q ss_pred             EEECCCCCCCEEEC-----CCCCEEEECCCCCC
Q ss_conf             44022346422562-----79604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFY-----NNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~-----~~~i~giIDF~~~~  213 (316)
                      +||.|+.|.|||+.     .+.+. ++||+.|.
T Consensus       129 IiHRDiKP~NILi~~~~~~~~~vK-i~DFG~a~  160 (317)
T cd07867         129 VLHRDLKPANILVMGEGPERGRVK-IADMGFAR  160 (317)
T ss_pred             EECCCCCCCCEEEECCCCCCCCEE-ECCCCCCE
T ss_conf             552678700079823687668467-64666003


No 151
>cd06622 PKc_MAPKK_PBS2_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cer
Probab=97.53  E-value=0.0028  Score=40.88  Aligned_cols=141  Identities=20%  Similarity=0.258  Sum_probs=74.7

Q ss_pred             EEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             3100466812001799943-99-589998216699889---999999999985326775551001026778752245155
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      -++.|..|.--+.|++... +| .+.+|..........   +..|+.+|..|.     .|.+++-.+   .....+..+.
T Consensus         5 il~~IG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~-----hpnIv~l~~---~~~~~~~~~i   76 (286)
T cd06622           5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAV-----SPYIVDFYG---AFFIEGAVYM   76 (286)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCC-----CCCEECCCE---EEEECCEEEE
T ss_conf             98896138790999999989996999999864409899999999999998679-----998943541---8998998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.           +.+...+ ....++        ...    ..        .....+...+..+..    
T Consensus        77 vmE~~~~G~L~-----------~l~~~~~-~~~~~~--------e~~----~~--------~i~~ql~~gL~ylH~----  120 (286)
T cd06622          77 CMEYMDAGSLD-----------KLYAGGV-ATEGIP--------EDV----LR--------RITYAVVKGLKFLKE----  120 (286)
T ss_pred             EEECCCCCCHH-----------HHHHHCC-CCCCCC--------HHH----HH--------HHHHHHHHHHHHHHH----
T ss_conf             99807999199-----------9986033-357899--------999----99--------999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             07774440223464225627-9604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                        ..++||.|+.|.|||++. +.+. +.||+.|.
T Consensus       121 --~~~IiHRDIKP~NILi~~~g~vK-l~DFG~a~  151 (286)
T cd06622         121 --EHNIIHRDVKPTNVLVNGNGQVK-LCDFGVSG  151 (286)
T ss_pred             --HCCEEECCCCHHHEEECCCCCEE-EEECCCCC
T ss_conf             --28974155777766688999899-97378886


No 152
>cd07855 STKc_ERK5 The catalytic domain of the Serine/Threonine Kinase,  Extracellular signal-Regulated Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphory
Probab=97.53  E-value=0.003  Score=40.62  Aligned_cols=142  Identities=11%  Similarity=0.169  Sum_probs=69.7

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHCCC
Q ss_conf             5310046681200179994-399-589998216699----8899999999999853267-75551001026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EKDLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|+... .+| .+.+|+..+..+    ...+-.|+.+|.+|...++ ..-..+.+.+.  + ...+.
T Consensus         8 ~i~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~~~~~~~~~--~-~~~~~   84 (336)
T cd07855           8 KPIETIGNGAYGVVCSAIDKKTGQKVAIKKIPNAFDVLTTAKRTLRELKILKHFKHDNIIAIKEILRPPVP--T-ADFKD   84 (336)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC--C-CCCCE
T ss_conf             98279822508799999989999899999989400246789999999999986689998538888712665--4-56765


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.++++.+|.         +.+   .+   +. ...++        ....            ......+...+..+.+ 
T Consensus        85 ~yivmE~~~~~---------L~~---~i---~~-~~~l~--------e~~i------------~~~~~Qll~aL~ylH~-  127 (336)
T cd07855          85 VYVVLDLMESD---------LHH---II---HS-DQPLT--------LEHV------------RYFLYQLLRGLKYIHS-  127 (336)
T ss_pred             EEEEEECCCCC---------HHH---HH---HH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH-
T ss_conf             89999726972---------699---99---85-89999--------9999------------9999999999999988-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             52107774440223464225627960487316213
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                            .|+||.|+.|.|||++.+...-++||+.|
T Consensus       128 ------~gIiHRDlKPeNILl~~~~~iKl~DFGla  156 (336)
T cd07855         128 ------ANVLHRDLKPSNLLVNENCELKIGDFGMA  156 (336)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEEECEECCC
T ss_conf             ------89412336547769869998883631100


No 153
>cd06619 PKc_MKK5 Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (
Probab=97.52  E-value=0.0019  Score=41.88  Aligned_cols=130  Identities=17%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             ECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             046681200179994-3995-899982166998---89999999999985326775551001026778752245155786
Q gi|254780795|r   29 PIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      -|..|.--+.|+..- .+|+ +.+|+.......   ..+..|+++|..|..     |.+++-.+   ....+++.+.+++
T Consensus         8 ~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~iv~E   79 (279)
T cd06619           8 ILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDS-----PYIIGFYG---AFFVENRISICTE   79 (279)
T ss_pred             EEECCCCEEEEEEEECCCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEE
T ss_conf             985178929999999999979999998843198999999999999986799-----99991979---9998999899997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.        ..    .+       ++.            ....        .....+...+..+.+       
T Consensus        80 ~~~gg~L~--------~~----~~-------~~e------------~~~~--------~i~~qi~~aL~ylH~-------  113 (279)
T cd06619          80 FMDGGSLD--------VY----RK-------IPE------------HVLG--------RIAVAVVKGLTYLWS-------  113 (279)
T ss_pred             CCCCCCHH--------HH----HC-------CCH------------HHHH--------HHHHHHHHHHHHHHH-------
T ss_conf             16998599--------98----56-------899------------9999--------999999999999997-------


Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             74440223464225627-9604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      +++||.|+.|.|||++. +.+ -++||+.|.
T Consensus       114 ~~iiHRDiKp~NILl~~~g~v-Kl~DFGla~  143 (279)
T cd06619         114 LKILHRDVKPSNMLVNTRGQV-KLCDFGVST  143 (279)
T ss_pred             CCEEECCCCCCCCCCCCCCCE-EECCCCCCE
T ss_conf             890535367766438899999-985583642


No 154
>cd07830 STKc_MAK_like The catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fer
Probab=97.52  E-value=0.0012  Score=43.18  Aligned_cols=138  Identities=15%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             EECCCCCEEEEEEEEE-CCCC-EEEEEECCCC-CHHHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             0046681200179994-3995-8999821669-988999--999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKRM-NEKDLP--VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~-~~~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|..|.--+.|++.. ++|+ |.+|+..... +.++..  .|+..|..+..    -|.+++..+   +...++..+.++
T Consensus         5 ~~iG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~l~~~~~----hpnIv~~~~---~~~~~~~~~iVm   77 (283)
T cd07830           5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNE----HPNIVKLKE---VFRENDELYFVF   77 (283)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEE---EEEECCEEEEEE
T ss_conf             8984172869999998899989999998801389789999999999997169----998826878---998899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|.-..      ...      +  .....++        ....            ......+...+..+.+      
T Consensus        78 Ey~~g~l~~------~l~------~--~~~~~~~--------e~~i------------~~~~~Ql~~al~ylH~------  117 (283)
T cd07830          78 EYMEGNLYQ------LMK------D--RKGKPFS--------ESVI------------RSIIYQILQGLAHIHK------  117 (283)
T ss_pred             ECCCCCHHH------HHH------H--CCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             688998799------998------6--2799989--------9999------------9999999999999997------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       .|+||.|+.|+|||++++...-++||+.|.
T Consensus       118 -~~iiHRDIKP~NILl~~~~~iKl~DFG~a~  147 (283)
T cd07830         118 -HGFFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             -CCCCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             -993636576799798789988997447765


No 155
>cd05625 STKc_LATS1 STKc_LATS1: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It 
Probab=97.52  E-value=0.0039  Score=39.90  Aligned_cols=137  Identities=15%  Similarity=0.136  Sum_probs=72.3

Q ss_pred             EEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             3100466812001799943-99-58999821669--9889---9999999999853267755510010267787522451
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      -++.|..|.--+.|++.-. .| .|.+|+..++.  ...+   +..|.++|..+.     -|.+++-..   ...-.+..
T Consensus         5 ~ik~iG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~l   76 (382)
T cd05625           5 KIKTLGIGAFGEVCLARKVDTGALYAMKTLRKKDVLLRNQVAHVKAERDILAEAD-----NEWVVRLYY---SFQDKDNL   76 (382)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEE
T ss_conf             9758814868399999988999899999982577324679999999999998689-----998775999---99989999


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|..+...           +   .+. ..++        ....            ......+...+..+.   
T Consensus        77 ylVmEy~~gGdL~~~-----------l---~~~-~~~~--------e~~a------------~~~~~qi~~aL~~lH---  118 (382)
T cd05625          77 YFVMDYIPGGDMMSL-----------L---IRM-GIFP--------EDLA------------QFYIAELTCAVESVH---  118 (382)
T ss_pred             EEEEECCCCCCHHHH-----------H---HCC-CCCC--------HHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999972599707775-----------4---125-5799--------9999------------999999999999998---


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             2107774440223464225627960487316213
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                          .+|+||.|+.|.|||++.+...-++||+.|
T Consensus       119 ----~~gIiHRDLKPeNILld~~g~iKL~DFGla  148 (382)
T cd05625         119 ----KMGFIHRDIKPDNILIDRDGHIKLTDFGLC  148 (382)
T ss_pred             ----HCCCCCCCCCCCEEEECCCCCEEEEECCCC
T ss_conf             ----555401557666378889998899406886


No 156
>cd06610 STKc_OSR1_SPAK Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WN
Probab=97.51  E-value=0.0021  Score=41.71  Aligned_cols=138  Identities=16%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             EECCCCCEEEEEEEEE--CCCCEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             0046681200179994--399589998216699---88999999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQT--SKGTFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t--~~~~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|..|.--+.|+...  ++..+.+|+......   .+.+..|+++|..|..     |.+++-..   ....++..+.++
T Consensus         7 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~~---~~~~~~~~~ivm   78 (266)
T cd06610           7 EVIGSGATAVVQRAICLPNGEKVAIKRIDLEKCQTSMDELRKEIQAMSLCHH-----PNVVKYYT---SFVVGDELWVVM   78 (266)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEE
T ss_conf             6972274849999999899989999998779894899999999999986799-----89891999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|.++...              +......      ....   ...    .     ......+...+..+.+      
T Consensus        79 E~~~~g~L~~~--------------~~~~~~~------~~~~---e~~----~-----~~~~~qi~~al~ylH~------  120 (266)
T cd06610          79 PLMSGGSCLDI--------------MKYSYPQ------GGLD---EAI----I-----ATILKEVLKGLEYLHK------  120 (266)
T ss_pred             ECCCCCCHHHH--------------HHHHCCC------CCCC---HHH----H-----HHHHHHHHHHHHHHHH------
T ss_conf             67689979999--------------9862647------9999---999----9-----9999999999999997------


Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             774440223464225627-9604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                       .++||.|+.|.|||++. +.+. |.||+.|.
T Consensus       121 -~~iiHRDiKP~NILl~~~~~vK-l~DFGla~  150 (266)
T cd06610         121 -NGQIHRDIKAGNILLDSDGSVK-LADFGVSA  150 (266)
T ss_pred             -CCCCCCCCCHHHEEECCCCCEE-EECCCCCE
T ss_conf             -8932266666667997999999-96687634


No 157
>cd06633 STKc_TAO3 Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pa
Probab=97.50  E-value=0.0023  Score=41.37  Aligned_cols=155  Identities=15%  Similarity=0.237  Sum_probs=80.8

Q ss_pred             HHHHHHHHHCCCC-CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999848998-6053100466812001799943-99-5899982166--998---8999999999998532677555
Q gi|254780795|r   10 KEIQSFVQEYAIG-QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLPCPI   81 (316)
Q Consensus        10 ~el~~il~~y~lg-~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gipvP~   81 (316)
                      .++..++.+=|.. ..+.++.|..|.--+.|+.... .| .+.+|+....  ...   ..+..|+++|..|..     |.
T Consensus         8 ~~~~~~~~~~dp~~~y~~l~~IG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-----pn   82 (313)
T cd06633           8 PEIADLFYKDDPEEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKH-----PN   82 (313)
T ss_pred             CCHHHHCCCCCHHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CC
T ss_conf             6568756077968842423896037585999999889998999999863441365999999999999997799-----89


Q ss_pred             CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             10010267787522451557864788707689989999999986436753068754332311245645766752001552
Q gi|254780795|r   82 PIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE  161 (316)
Q Consensus        82 pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~  161 (316)
                      +++-.+   ...-++..+.+++|++|...            ..+ ..|.  ..++        ....            .
T Consensus        83 IV~~~~---~~~~~~~~yivmEy~~G~~~------------~~l-~~~~--~~l~--------e~~~------------~  124 (313)
T cd06633          83 TIEYKG---CYLKEHTAWLVMEYCLGSAS------------DLL-EVHK--KPLQ--------EVEI------------A  124 (313)
T ss_pred             CCCEEE---EEEECCEEEEEEEECCCCHH------------HHH-HHHC--CCCC--------HHHH------------H
T ss_conf             990989---99989988999996279737------------899-9836--8999--------9999------------9


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             27889999999888765210777444022346422562796048731621356
Q gi|254780795|r  162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .....+...+..+.+       .++||.|+.|.|||++.+...-++||+.|..
T Consensus       125 ~i~~qil~aL~ylH~-------~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~  170 (313)
T cd06633         125 AITHGALQGLAYLHS-------HNMIHRDIKAGNILLTEPGQVKLADFGSASK  170 (313)
T ss_pred             HHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             999999999999986-------8966530666555688999989985178664


No 158
>cd06613 STKc_MAP4K3_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-bindin
Probab=97.50  E-value=0.0029  Score=40.78  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             EEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             10046681200179994-3995-899982166--9988999999999998532677555100102677875224515578
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      .+.|..|.--+.|+... .+|+ +.+|+....  ...+.+..|+.+|..|...     .+++-. |  ...-.+..+.++
T Consensus         8 ~~~iG~G~fg~V~~~~~~~~g~~~AiK~~~~~~~~~~~~~~~Ei~il~~l~Hp-----nIv~~~-~--~~~~~~~~~ivm   79 (261)
T cd06613           8 LQRIGSGTYGDVYKARDIATGELAAVKVIKLEPGDDFEIIQQEISMLKECRHP-----NIVAYF-G--SYLRRDKLWIVM   79 (261)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-E--EEEECCEEEEEE
T ss_conf             10984175839999998899989999998058665799999999999867998-----999299-9--999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.           ..+.+.    ..+        .....            ......+...+..+.+      
T Consensus        80 Ey~~~g~L~-----------~~~~~~----~~~--------~e~~i------------~~~~~qil~aL~ylH~------  118 (261)
T cd06613          80 EYCGGGSLQ-----------DIYQVT----GPL--------SELQI------------AYVCRETLKGLAYLHS------  118 (261)
T ss_pred             ECCCCCCHH-----------HHHHHC----CCC--------CHHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             797989099-----------999734----999--------99999------------9999999999999998------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +|+||.|+.|.|||++++...-|.||+.|.
T Consensus       119 -~~iiHRDiKp~NILl~~~~~vKi~DFGla~  148 (261)
T cd06613         119 -QGKIHRDIKGANILLTEDGDVKLADFGVSA  148 (261)
T ss_pred             -CCCEECCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             -890534567798798899999992582665


No 159
>cd05601 STKc_CRIK STKc_CRIK: Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome
Probab=97.50  E-value=0.0069  Score=38.32  Aligned_cols=136  Identities=15%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             00466812001799943-99-5899982166--99889---999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|++... .| .|.+|+..+.  .....   +..+.++|..+.     .|.+++-..   ..+-.+..+.
T Consensus         7 ~~LG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~yi   78 (330)
T cd05601           7 SVIGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDIMAIAN-----SPWIPQLQY---AFQDKDNLYL   78 (330)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEE
T ss_conf             68421758299999988999899999982688679899999999999998679-----998894999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.              ..+.+....+        ......            .....+...+..+.     
T Consensus        79 vmEy~~gGdL~--------------~~l~~~~~~l--------~e~~~~------------~~~~qi~~al~yLH-----  119 (330)
T cd05601          79 VMEYHPGGDLL--------------SLLNRYEDQF--------DESMAQ------------FYLAELVLAIHSLH-----  119 (330)
T ss_pred             EEECCCCCCHH--------------HHHHHCCCCC--------CHHHHH------------HHHHHHHHHHHHHH-----
T ss_conf             99837997489--------------9998618999--------999999------------99999999999997-----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             07774440223464225627-9604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                        .+|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       120 --~~gIiHRDiKPeNILld~~g~iK-L~DFGla~  150 (330)
T cd05601         120 --QMGYVHRDIKPENILIDRTGHIK-LADFGSAA  150 (330)
T ss_pred             --HCCEEECCCCCCCEEECCCCCEE-EEECCCEE
T ss_conf             --48688454650003465899889-80265547


No 160
>cd07872 STKc_PCTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could 
Probab=97.48  E-value=0.0074  Score=38.12  Aligned_cols=139  Identities=15%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             EEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             053100466812001799943-99-589998216699---8899999999999853267755510010267787522451
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      .+-++.|..|.--+.|+.... .+ .+.+|+......   ....-.|+++|..|..     |.+++-.+   +..-++..
T Consensus         8 Y~~~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~l~~---~~~~~~~~   79 (309)
T cd07872           8 YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKH-----ANIVTLHD---IVHTDKSL   79 (309)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEE
T ss_conf             78855861485929999998899979999998532222148999999999986789-----89841778---99659979


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.      .      -+.+   ......+        ......            .....+...+..+.+  
T Consensus        80 ~lv~Ey~~~~------L------~~~l---~~~~~~~--------~~~~~~------------~~~~qil~al~ylH~--  122 (309)
T cd07872          80 TLVFEYLDKD------L------KQYM---DDCGNIM--------SMHNVK------------IFLYQILRGLAYCHR--  122 (309)
T ss_pred             EEEEECCCCC------H------HHHH---HHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH--
T ss_conf             9999634777------8------9999---9728889--------999999------------999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             21077744402234642256279-604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                           .|+||.|+.|.|||++++ .+. ++||+.|.
T Consensus       123 -----~~IiHRDiKPeNILl~~~g~vK-l~DFGla~  152 (309)
T cd07872         123 -----RKVLHRDLKPQNLLINERGELK-LADFGLAR  152 (309)
T ss_pred             -----CCEEECCCCCHHEEECCCCCEE-EEEECCCH
T ss_conf             -----8916455750316887889787-50433311


No 161
>cd06645 STKc_MAP4K3 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA
Probab=97.48  E-value=0.0039  Score=39.88  Aligned_cols=137  Identities=16%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             10046681200179994-399-58999821669--988999999999998532677555100102677875224515578
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      ++.|..|.--+.|+... ..| .|.+|+.....  +...+..|+.+|..+..     |.+++-.+   ...-.+..+.++
T Consensus        14 ~~~iG~G~fg~Vy~~~~~~t~~~~AvK~i~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~---~~~~~~~~~ivm   85 (267)
T cd06645          14 IQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKH-----SNIVAYFG---SYLRRDKLWICM   85 (267)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEEEE
T ss_conf             2498328685999999889997999999947742029999999999986899-----98828999---999899899999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.     ++         ++.. ..++        .....            .....+...+..+.+      
T Consensus        86 Ey~~~g~L~-----~~---------~~~~-~~~~--------e~~~~------------~~~~qi~~al~yLH~------  124 (267)
T cd06645          86 EFCGGGSLQ-----DI---------YHVT-GPLS--------ESQIA------------YVSRETLQGLYYLHS------  124 (267)
T ss_pred             ECCCCCCHH-----HH---------HHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------
T ss_conf             736999199-----99---------9872-9999--------99999------------999999999999997------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +++||.|+.|.|||++++...-|+||+.|.
T Consensus       125 -~~iiHRDlKp~NILl~~~g~vKl~DFGls~  154 (267)
T cd06645         125 -KGKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             -CCCEEEECCHHHEEECCCCCEEEECCCCCE
T ss_conf             -793560055332798799989991386754


No 162
>cd06624 STKc_ASK Serine/threonine kinases (STKs), apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=97.48  E-value=0.0062  Score=38.59  Aligned_cols=144  Identities=15%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             6053100466812001799943-99-589998216699--8899999999999853267755510010267787522451
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      ++..-.-|..|.--+.|+.... ++ .+.+|.......  .+.+..|+.++..|..     |.+++-.+   ...-++..
T Consensus         9 ~~~~~~vIG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~i~~~l~H-----pnIv~~~~---~~~~~~~~   80 (268)
T cd06624           9 ENGERVVLGKGTYGVVYAGRDLSTQVRIAIKEIPERDSRYSQPLHEEIALHSRLKH-----KNIVQYLG---SDSENGYF   80 (268)
T ss_pred             CCCCEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEE
T ss_conf             79871899637482999999889995999999873585889999999999986899-----89873999---99789999


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|..+..           .+   +........      ......            .....+...+..+.+  
T Consensus        81 ~iv~Ey~~gg~L~~-----------~l---~~~~~~~~~------~e~~~~------------~~~~qi~~al~ylH~--  126 (268)
T cd06624          81 KIFMEQVPGGSLSA-----------LL---RSKWGPLKD------NESTII------------FYTKQILEGLKYLHD--  126 (268)
T ss_pred             EEEEECCCCCCHHH-----------HH---HHCCCCCCC------CHHHHH------------HHHHHHHHHHHHHHH--
T ss_conf             99998389996999-----------99---861689985------799999------------999999999999987--


Q ss_pred             HHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             2107774440223464225627-9604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                           +++||.|+.|.|||++. +.+.-++||+.|.
T Consensus       127 -----~~IiHRDlKp~NiLl~~~~~~vKl~DFG~a~  157 (268)
T cd06624         127 -----NQIVHRDIKGDNVLVNTYSGVLKISDFGTSK  157 (268)
T ss_pred             -----CCEEECCCCCCEEEEECCCCCEEEECCCCCE
T ss_conf             -----9967634662138994799988994187785


No 163
>cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=97.47  E-value=0.0038  Score=40.01  Aligned_cols=136  Identities=16%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             ECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             046681200179994399-589998216699889---9999999999853267755510010267787522451557864
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|..|.--+.|+.....+ ...+|+.......+.   +-.|+.+|..|.     -|.+++-. |  ...-.+..+.+++|
T Consensus         2 ~lG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~~~-g--~~~~~~~~~lvmEy   73 (251)
T cd05041           2 KIGKGNFGDVYKGVLKGKTEVAVKTCRSTLPPDLKRKFLQEAEILKQYD-----HPNIVKLI-G--VCVQKQPIYIVMEL   73 (251)
T ss_pred             CCCCCCCCEEEEEEECCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEEEEEEC
T ss_conf             7758988489999999998999999862049789999999999998589-----99888897-8--99579989999984


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..              -|+.....+        .   +...         -.+...+...+..+.+       .
T Consensus        74 ~~~G~L~~--------------~l~~~~~~~--------~---~~~~---------~~i~~~ia~gl~yLH~-------~  112 (251)
T cd05041          74 VPGGSLLT--------------FLRKKKNRL--------T---VKKL---------LQMSLDAAAGMEYLES-------K  112 (251)
T ss_pred             CCCCCHHH--------------HHHHCCCCC--------C---HHHH---------HHHHHHHHHHHHHHHH-------C
T ss_conf             79996899--------------997357999--------9---9999---------9999999999998832-------8


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++|+|+.+.|||++.+...-|.||+.|.
T Consensus       113 ~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  141 (251)
T cd05041         113 NCIHRDLAARNCLVGENNVLKISDFGMSR  141 (251)
T ss_pred             CCCCCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             95278615400898899918981658860


No 164
>cd05594 STKc_PKB_alpha STKc_PKB_alpha: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, r
Probab=97.47  E-value=0.0026  Score=41.07  Aligned_cols=134  Identities=13%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-5899982166--9988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... .| .|.+|+..+.  ....++.   .|..+|..+     .-|.+++-..   ..+-.++.+.+++
T Consensus         4 G~G~fG~V~l~~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~Hp~Iv~l~~---~f~~~~~lylVmE   75 (324)
T cd05594           4 GKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS-----RHPFLTALKY---SFQTHDRLCFVME   75 (324)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHC-----CCCCEEEEEE---EEEECCEEEEEEE
T ss_conf             6173849999998899989999998278864879999999999999868-----9998817999---9998999999996


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+..              .+.+. ..|+        .....            .....+...+..+..      .
T Consensus        76 y~~gGdL~~--------------~l~~~-~~~~--------e~~~~------------~~~~qi~~aL~yLHs------~  114 (324)
T cd05594          76 YANGGELFF--------------HLSRE-RVFS--------EDRAR------------FYGAEIVSALDYLHS------E  114 (324)
T ss_pred             CCCCCCHHH--------------HHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------H
T ss_conf             779984766--------------67516-8899--------99999------------999999999999998------3


Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             74440223464225627-96048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      +++||.|+.|.|||++. +.+. ++||+.|..
T Consensus       115 ~~IiHRDLKPeNILl~~~g~iK-L~DFGlak~  145 (324)
T cd05594         115 KNVVYRDLKLENLMLDKDGHIK-ITDFGLCKE  145 (324)
T ss_pred             CCEECCCCCCCCCCCCCCCCEE-ECCHHHHHH
T ss_conf             7971143456555647888773-122134343


No 165
>cd07875 STKc_JNK1 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes
Probab=97.47  E-value=0.0025  Score=41.19  Aligned_cols=140  Identities=15%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCE
Q ss_conf             10046681200179994-399-5899982166-998---8999999999998532677-555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|+..- ..| .+.+|+..+. .+.   ..+-.|+.+|..|...+|- .-.....  ...+.. ....+
T Consensus        29 ~~~IG~G~fG~V~~a~d~~t~~~vAIK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIV~l~~~~~~--~~~~~~-~~~~y  105 (364)
T cd07875          29 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTP--QKSLEE-FQDVY  105 (364)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCCC-CCEEE
T ss_conf             089601638699999988999899999989224296899999999999986799599958899940--675554-78189


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .++++++|.-        +..+ +      .   .++        .....            .....+...+..+.+   
T Consensus       106 iV~E~~~~~L--------~~~i-~------~---~l~--------~~~i~------------~i~~Qil~al~ylH~---  144 (364)
T cd07875         106 IVMELMDANL--------CQVI-Q------M---ELD--------HERMS------------YLLYQMLCGIKHLHS---  144 (364)
T ss_pred             EEEECCCCCH--------HHHH-H------H---CCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             9995679878--------9998-7------3---399--------99999------------999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             10777444022346422562796048731621356
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                          .|+||.|+.|.|||++.+...-|+||+.|..
T Consensus       145 ----~~IiHRDlKP~NILl~~~~~iKi~DFGlAr~  175 (364)
T cd07875         145 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLART  175 (364)
T ss_pred             ----CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             ----8834446888887888899889832123523


No 166
>cd05621 STKc_ROCK2 STKc_ROCK2: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain
Probab=97.47  E-value=0.0017  Score=42.23  Aligned_cols=142  Identities=14%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             CCCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             9986053100466812001799943-99-5899982166--99---8899999999999853267755510010267787
Q gi|254780795|r   20 AIGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        20 ~lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
                      .+....-++-|..|.--+.|++.-. +| .|.+|+..+.  ..   ...+..|.++|..+..     |.+++-..   .+
T Consensus        41 ~~dDFeiik~IG~GsFG~V~lv~~k~tg~~yAiK~i~K~~~~~~~~~~~~~~E~~il~~~~h-----p~IV~l~~---~F  112 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS-----PWVVQLFC---AF  112 (370)
T ss_pred             CHHHCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EE
T ss_conf             75400586688507684899999989998999999988996436789999999999985799-----98891899---99


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             52245155786478870768998999999998643675306875433231124564576675200155227889999999
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC  172 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (316)
                      +-.+..+.+++|++|..+.           ..+   .+  .+++        ....            .....++...+.
T Consensus       113 qd~~~lylVmEy~~GGdL~-----------~ll---~~--~~~~--------E~~a------------~~y~~qi~~AL~  156 (370)
T cd05621         113 QDDKYLYMVMEYMPGGDLV-----------NLM---SN--YDVP--------EKWA------------KFYTAEVVLALD  156 (370)
T ss_pred             EECCEEEEEEECCCCCCHH-----------HHH---HC--CCCC--------HHHH------------HHHHHHHHHHHH
T ss_conf             8499899998589997499-----------998---81--8989--------9999------------999999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             8887652107774440223464225627960487316213
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      .+.+       +++||.|+.|.|||++.+...-+.||+.|
T Consensus       157 yLH~-------~~IiHRDLKPeNILld~~g~iKL~DFGla  189 (370)
T cd05621         157 AIHS-------MGLIHRDVKPDNMLLDKHGHLKLADFGTC  189 (370)
T ss_pred             HHHH-------CCEEECCCCCCCCCCCCCCCEEECCCCEE
T ss_conf             9853-------86785666732212258887353245215


No 167
>cd07870 STKc_PFTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal re
Probab=97.47  E-value=0.008  Score=37.89  Aligned_cols=138  Identities=16%  Similarity=0.224  Sum_probs=74.0

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +-++.|..|.--+.|.... .+|+ |.+|+...+...   ...-.|+.+|..|+.     |.+++-.+   +..-++..+
T Consensus         8 ~~~~~lG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~H-----pnIv~l~~---~~~~~~~~~   79 (291)
T cd07870           8 LNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKH-----ANIVLLHD---IIHTKETLT   79 (291)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHCCC-----CCEEEEEE---CCCCCCEEE
T ss_conf             7868931372809999998899979999998320012307899999999986799-----99877831---015786589


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|...            +.+.+ |  ..+++        ....            ......+...+..+.+   
T Consensus        80 lv~Ey~~~~l~------------~~~~~-~--~~~l~--------~~~i------------~~~~~Qil~aL~ylH~---  121 (291)
T cd07870          80 FVFEYMHTDLA------------QYMIQ-H--PGGLH--------PYNV------------RLFMFQLLRGLAYIHG---  121 (291)
T ss_pred             EEEECCCCHHH------------HHHHH-C--CCCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             99973572458------------99996-6--79999--------9999------------9999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||++. +++. ++||+.|.
T Consensus       122 ----~~IiHRDlKPeNILi~~~~~vK-l~DFGla~  151 (291)
T cd07870         122 ----QHILHRDLKPQNLLISYLGELK-LADFGLAR  151 (291)
T ss_pred             ----CCCEECCCCHHHEEECCCCCEE-EEEECCCC
T ss_conf             ----8834144871325787899889-98752430


No 168
>cd05589 STKc_PKN STKc_PKN: Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, ce
Probab=97.47  E-value=0.0036  Score=40.15  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=74.4

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166--9988---999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++... .| .|.+|+..+.  ....   .+..+.++|..++..  .-|.+++-.+   ...-.+..+
T Consensus         4 l~~lG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~--~HP~Iv~l~~---~f~~~~~~y   78 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSE--RHPFLVNLFA---CFQTEDHVC   78 (324)
T ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEE---EEEECCEEE
T ss_conf             99982273819999999999989999998578842747999999999999998647--9999894999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.              ..++.  ..++        .....            .....+...+..+.+   
T Consensus        79 lvmEy~~gGdL~--------------~~i~~--~~l~--------e~~~~------------~~~~qi~~aL~ylH~---  119 (324)
T cd05589          79 FVMEYAAGGDLM--------------MHIHT--DVFS--------EPRAV------------FYAACVVLGLQYLHE---  119 (324)
T ss_pred             EEEECCCCCCHH--------------HHHHC--CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999779998699--------------99743--8999--------99999------------999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             10777444022346422562796048731621356
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                          +++||.|+.|.|||++.+...-++||+.|..
T Consensus       120 ----~~IiHRDlKPeNILl~~~g~iKL~DFGlak~  150 (324)
T cd05589         120 ----NKIVYRDLKLDNLLLDTEGYVKIADFGLCKE  150 (324)
T ss_pred             ----CCEEEEECCCCCCCCCCCCCEEEEECCHHHH
T ss_conf             ----8988985365442136899889965111121


No 169
>cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R
Probab=97.47  E-value=0.00074  Score=44.59  Aligned_cols=143  Identities=17%  Similarity=0.206  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEEEEEC----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             466812001799943----9958999821669988999999999998532677555100102677875224515578647
Q gi|254780795|r   30 IIHGVENSNFVIQTS----KGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        30 i~~G~~Ntny~v~t~----~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
                      |..|.--+.|+....    +..|.+|+.++.......-.|+.+|..|..     |.+++-.+ -.....++..+.+++|.
T Consensus         9 iG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~~~~~~~~rEi~iL~~l~h-----pniv~l~~-~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKH-----PNVISLQK-VFLSHADRKVWLLFDYA   82 (317)
T ss_pred             EEECCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEEEEEEECC
T ss_conf             4106181999999842863849999998988785899999999986799-----89984889-99707997799999627


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88707689989999999986436753068754332311245645766752001552278899999998887652107774
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG  185 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g  185 (316)
                      +|.      ..   .   .+ +.|+......  ++..+....    .        ......+...+..+.+       .+
T Consensus        83 ~~~------L~---~---~~-~~~~~~~~~~--~~~~l~~~~----i--------~~~~~qil~al~ylH~-------~~  128 (317)
T cd07868          83 EHD------LW---H---II-KFHRASKANK--KPVQLPRGM----V--------KSLLYQILDGIHYLHA-------NW  128 (317)
T ss_pred             CCC------HH---H---HH-HHHHCCCCCC--CCCCCCHHH----H--------HHHHHHHHHHHHHHHH-------CC
T ss_conf             997------89---9---99-8722010015--766789999----9--------9999999999999987-------89


Q ss_pred             EEECCCCCCCEEEC-----CCCCEEEECCCCCC
Q ss_conf             44022346422562-----79604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFY-----NNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~-----~~~i~giIDF~~~~  213 (316)
                      +||.|+.|.|||+.     .+.+. |+||+.|.
T Consensus       129 IiHRDlKP~NILi~~~~~~~~~vK-i~DFG~a~  160 (317)
T cd07868         129 VLHRDLKPANILVMGEGPERGRVK-IADMGFAR  160 (317)
T ss_pred             EEECCCCCCEEEEECCCCCCCCEE-ECCCCCCE
T ss_conf             660578702078723688778578-73565025


No 170
>smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.
Probab=97.47  E-value=0.0066  Score=38.44  Aligned_cols=138  Identities=19%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             00466812001799943-99-5899982166998---8999999999998532677555100102677875224515578
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      +.|..|.--+.|+..-. ++ .+.+|+.......   ..+..|+++|..|..     |.+++-.+   ...-.+..+.++
T Consensus         5 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~h-----pnIv~~~~---~~~~~~~~~ivm   76 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKH-----PNIVKLYG---VFEDPEPLYLVM   76 (225)
T ss_pred             EEEECCCCCEEEEEEECCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEE
T ss_conf             9983288929999999999989999998354098899999999999997799-----89981877---987899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|.++..           .+   ...  +      ........            ......+...+..+.+      
T Consensus        77 Ey~~~G~L~~-----------~l---~~~--~------~~~~~~~~------------~~~~~qi~~gl~~lH~------  116 (225)
T smart00221       77 EYCEGGDLFD-----------YL---RKK--G------GKLSEEEA------------RFYLRQILEALEYLHS------  116 (225)
T ss_pred             ECCCCCCHHH-----------HH---HHC--C------CCCCHHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             8779990899-----------99---976--9------99999999------------9999999999999997------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             77444022346422562796048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                       ++++|.|+.|.|||++.+...-++||+.|..
T Consensus       117 -~~iiHrDiKp~NIl~~~~~~~kl~DFG~a~~  147 (225)
T smart00221      117 -LGIVHRDLKPENILLGMDGLVKLADFGLARF  147 (225)
T ss_pred             -CCEEECCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             -9967452777887998999899996677778


No 171
>cd05612 STKc_PRKX_like STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell
Probab=97.46  E-value=0.0021  Score=41.64  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=75.0

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166--99---88999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++... +| .|.+|+..+.  ..   .+.+..|+.+|..|..     |.+++-.+   ...-.+..+
T Consensus         6 i~~lG~G~fg~V~~a~~~~t~~~~AiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-----p~Iv~l~~---~~~~~~~~y   77 (291)
T cd05612           6 IETLGTGTFGRVYLVRHKASGAYYALKVLAIPEVIRLKQVEHVHNEKSILSEISH-----PFIVNMYW---TFHDDKFLY   77 (291)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             8995138891999999889998999999857780598999999999999987799-----89890999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..              .+.+. ..++        .....            .....+...+..+.+   
T Consensus        78 ivmEy~~gg~L~~--------------~i~~~-~~l~--------e~~~~------------~~~~qi~~aL~ylH~---  119 (291)
T cd05612          78 MLMEYVPGGELFS--------------YLRKA-GKFS--------NSTAR------------FYAAEIVCALEYLHS---  119 (291)
T ss_pred             EEEECCCCCCHHH--------------HHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             9997889982899--------------99873-9999--------99999------------999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||++. +++. ++||+.|.
T Consensus       120 ----~~IiHRDlKP~NIll~~~g~vK-l~DFG~a~  149 (291)
T cd05612         120 ----KEIVYRDLKPENLLLDKEGHIK-ITDFGFAK  149 (291)
T ss_pred             ----CCCEECCCCCCCCCCCCCCCEE-ECCCCCEE
T ss_conf             ----7974143266553236999789-63241004


No 172
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.46  E-value=0.0011  Score=43.40  Aligned_cols=156  Identities=13%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             CCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             986053100466812001799943-99-5899982166-99---889999999999985326775551001026778752
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +|...-++.|..|.--+.|++... +| .|.+|+.... ..   ...+..|+.+|..|....     +|+-.+ .....-
T Consensus         8 ignYelle~IG~GsFG~VylAr~k~Tg~~vAiK~I~~~~l~~k~r~~l~~Ei~ILk~L~HPn-----IVk~yd-~f~d~~   81 (484)
T PTZ00266          8 IANYTVVNRIGSGRFGEVFLVRHKHTGQLFCWKVVAYKGLSDKEKQQLVMEVNVIRELNHPN-----IVRYID-RMIDKR   81 (484)
T ss_pred             CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCC-----CCCEEE-EEEECC
T ss_conf             66807705962477829999998789989999997556679999999999999999779999-----973889-999479


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      .+..+.+++|++|..+           +..+-+.......++        .....            .....+...+..+
T Consensus        82 ~~~lyIVMEYc~GGDL-----------~~~I~~~~~~~~~l~--------E~~i~------------~i~~QLl~AL~yL  130 (484)
T PTZ00266         82 RQLLYILMEYCDAGDL-----------GENMRQFYKHYKLVN--------EQVIF------------DIALQLIFALAYC  130 (484)
T ss_pred             CCEEEEEEECCCCCCH-----------HHHHHHHHHHCCCCC--------HHHHH------------HHHHHHHHHHHHH
T ss_conf             9989999948899818-----------999999986068999--------99999------------9999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCC--------CEEEECCCCCC
Q ss_conf             8765210777444022346422562796--------04873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNK--------IMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~--------i~giIDF~~~~  213 (316)
                      .......-..++||.|+.|.|||+..+.        +.-|+||+.|.
T Consensus       131 H~~~~~~~s~~IIHRDLKPeNILL~~~~~~dg~~~~viKL~DFGLAk  177 (484)
T PTZ00266        131 HNCKSGTKTGKVLHRDLKPQNILLSTKHNKDGNKSYVCKIGDFGLCR  177 (484)
T ss_pred             HHCCCCCCCCCEECCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCE
T ss_conf             72544345588761788779878535766567767506897656751


No 173
>cd07873 STKc_PCTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and ma
Probab=97.45  E-value=0.007  Score=38.25  Aligned_cols=138  Identities=13%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             EEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             53100466812001799943-99-589998216699---88999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +-++.|..|.--+.|+.... +| .+.+|+......   ....-.|+++|..|..     |.+|+-.+   +...++..+
T Consensus         9 ~~~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~   80 (301)
T cd07873           9 IKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKH-----ANIVTLHD---IIHTEKSLT   80 (301)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE
T ss_conf             8733872376929999998899989999998543323138899999999987799-----99764989---994499789


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.            +-+.+   ......++        ....            ......+...+..+.+   
T Consensus        81 lV~Ey~~~~------------L~~~l---~~~~~~~~--------~~~i------------~~~~~Qll~al~ylH~---  122 (301)
T cd07873          81 LVFEYLDKD------------LKQYL---DDCGNSIN--------MHNV------------KLFLFQLLRGLNYCHR---  122 (301)
T ss_pred             EEEECCCHH------------HHHHH---HHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             999636666------------99999---97289899--------9999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||+++ +.+. ++||+.|.
T Consensus       123 ----~gIiHRDiKPeNILl~~~~~iK-l~DFGla~  152 (301)
T cd07873         123 ----RKVLHRDLKPQNLLINERGELK-LADFGLAR  152 (301)
T ss_pred             ----CCCEECCCCHHHEEECCCCCEE-EEECCCCH
T ss_conf             ----8907642761335888999889-99727503


No 174
>cd05052 PTKc_Abl Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=97.45  E-value=0.0042  Score=39.72  Aligned_cols=139  Identities=17%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             EEECCCCCEEEEEEEEECC-C-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             1004668120017999439-9-589998216-699889999999999985326775551001026778752245155786
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      .+.|..|.--+.|+-.... | .+.+|+... ....+++-.|+.+|..|..     |.+++-. |  ....++..+.+++
T Consensus        11 ~~~iG~G~fG~Vyk~~~~~~~~~VAvK~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~-g--~~~~~~~~~iv~E   82 (263)
T cd05052          11 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH-----PNLVQLL-G--VCTREPPFYIITE   82 (263)
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEEEEE
T ss_conf             459840788299999988999499999988875619999999999985799-----9998588-9--9946998999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|.++.           .   -++.....       .  . .+...         -.+...+...+..+.+       
T Consensus        83 y~~~G~L~-----------~---~l~~~~~~-------~--~-~~~~~---------~~ia~qia~gl~yLH~-------  122 (263)
T cd05052          83 FMTYGNLL-----------D---YLRECNRQ-------E--V-NAVVL---------LYMATQISSAMEYLEK-------  122 (263)
T ss_pred             CCCCCCHH-----------H---HHHHCCCC-------C--C-CHHHH---------HHHHHHHHHHHHHHHH-------
T ss_conf             27999089-----------9---99756988-------8--9-99999---------9999999999999965-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|+|+.+.|||++++...-|.||+.+.
T Consensus       123 ~~iiHrDLK~~NiLl~~~~~vKl~DFGls~  152 (263)
T cd05052         123 KNFIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             895357566020567799949998667655


No 175
>cd06627 STKc_Cdc7_like Serine/threonine kinases (STKs), cell division control protein 7 (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in
Probab=97.45  E-value=0.0037  Score=40.04  Aligned_cols=134  Identities=16%  Similarity=0.224  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEEEEE-CCCC-EEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             46681200179994-3995-899982166-9988---9999999999985326775551001026778752245155786
Q gi|254780795|r   30 IIHGVENSNFVIQT-SKGT-FILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        30 i~~G~~Ntny~v~t-~~~~-yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      |..|.--+.|+... .+|+ +.+|+.... ...+   .+..|+++|..|..     |.+++-.+   ...-++..+.+++
T Consensus         8 lG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~ivmE   79 (254)
T cd06627           8 IGKGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLNH-----PNIVKYIG---SVKTSDSLYIILE   79 (254)
T ss_pred             EECCCCCEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEE
T ss_conf             721768199999988999799999986576998999999999999986799-----89995999---9998999999996


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|.++.           +.+   ++. ..++        ....            ......+...+..+.+       
T Consensus        80 y~~gg~L~-----------~~l---~~~-~~l~--------e~~~------------~~~~~qi~~al~ylH~-------  117 (254)
T cd06627          80 YAENGSLR-----------QII---KKF-GKFP--------ESLV------------AVYVYQVLQGLAYLHE-------  117 (254)
T ss_pred             CCCCCCHH-----------HHH---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             87998499-----------999---874-9999--------9999------------9999999999999998-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++++...-++||+.|.
T Consensus       118 ~~IiHRDiKp~NILl~~~g~vKl~DFGla~  147 (254)
T cd06627         118 QGVIHRDIKAANILTTKDGVVKLADFGVAT  147 (254)
T ss_pred             CCEEEEECCHHHEEECCCCCEEEECCCCCE
T ss_conf             994871147787788799998992588843


No 176
>cd05580 STKc_PKA STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It pl
Probab=97.44  E-value=0.0033  Score=40.40  Aligned_cols=136  Identities=16%  Similarity=0.230  Sum_probs=73.3

Q ss_pred             EECCCCCEEEEEEEEEC-CCC-EEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             00466812001799943-995-8999821669--988---9999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KGT-FILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|++... +|+ |.+|+..+..  ...   .+..|+.+|..|..     |.+++-.+   ..+-.+..+.
T Consensus         7 ~~lG~G~fg~V~~a~~~~t~~~vAiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----pnIv~l~~---~~~~~~~~yi   78 (290)
T cd05580           7 KTLGTGSFGRVMLVKHKGTGKYYAMKILSKAKIVKLKQVEHVLNEKRILQAVRH-----PFLVNLLG---SFKDNSNLYM   78 (290)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE
T ss_conf             998327683999999989998999999856883377899999999999986799-----89990999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+..           .+   .+ ...++        .....            .....+...+..+.+    
T Consensus        79 vmEy~~gg~L~~-----------~l---~~-~~~l~--------e~~~~------------~~~~Qi~~aL~ylH~----  119 (290)
T cd05580          79 VMEFVPGGELFS-----------LL---RR-SGRFP--------EPVAR------------FYAAQVVLALEYLHS----  119 (290)
T ss_pred             EEECCCCCCHHH-----------HH---HH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             995899989899-----------99---87-49999--------99999------------999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       120 ---~~IiHRDiKpeNILl~~~g~iKL~DFG~a~  149 (290)
T cd05580         120 ---LDIVYRDLKPENLLLDSDGYIKITDFGFAK  149 (290)
T ss_pred             ---CCEEEEECCCCCCCCCCCCCEEEEECCCCE
T ss_conf             ---892420236433330689988980055336


No 177
>cd05582 STKc_RSK_N STKc_RSK_N: Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein ki
Probab=97.44  E-value=0.0018  Score=42.14  Aligned_cols=136  Identities=20%  Similarity=0.278  Sum_probs=70.4

Q ss_pred             EECCCCCEEEEEEEEE----CCCC-EEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             0046681200179994----3995-899982166-9988---99999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQT----SKGT-FILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t----~~~~-yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +-|..|.--+.|++..    +.|+ |.+|+..+. ....   ....|.++|..|     .-|.+++-..   ..+-.++.
T Consensus         2 k~iG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~E~~il~~l-----~Hp~Iv~l~~---~f~~~~~l   73 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEV-----NHPFIVKLHY---AFQTEGKL   73 (318)
T ss_pred             CEECCCCCCEEEEEEEEECCCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEE
T ss_conf             675018980899999700078891899999835766867899999999999877-----9998891999---99989989


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|..+.              ..+.+. ..+        ......            .....+...+..+.+  
T Consensus        74 ylvmEy~~gGdL~--------------~~l~~~-~~l--------~e~~~~------------~~~~qi~~aL~ylH~--  116 (318)
T cd05582          74 YLILDFLRGGDLF--------------TRLSKE-VMF--------TEEDVK------------FYLAELALALDHLHS--  116 (318)
T ss_pred             EEEEECCCCCCHH--------------HHHHCC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH--
T ss_conf             9999558998487--------------763016-899--------999999------------999999999999987--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       117 -----~~IiHRDlKPeNILld~~g~iKL~DFGlak  146 (318)
T cd05582         117 -----LGIIYRDLKPENILLDEEGHIKLTDFGLSK  146 (318)
T ss_pred             -----CCCEEEEECCCCCCCCCCCCEEECCCCHHH
T ss_conf             -----898721014544541788988642312202


No 178
>cd07871 STKc_PCTAIRE3 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical fila
Probab=97.44  E-value=0.0094  Score=37.44  Aligned_cols=138  Identities=15%  Similarity=0.169  Sum_probs=72.5

Q ss_pred             EEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             53100466812001799943-99-589998216699---88999999999998532677555100102677875224515
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      .-++.|..|.--+.|+.... .| .+.+|+......   ....-.|+.+|..|..     |.+++-.+   +..-++..+
T Consensus         8 ~~~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~   79 (288)
T cd07871           8 VKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKH-----ANIVTLHD---IIHTERCLT   79 (288)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCC-----CCEEEEEE---EECCCCEEE
T ss_conf             8821870486929999998899989999998343223038999999999986789-----99722411---134798689


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.         +.+   .+   ......+        ......            .....+...+..+.+   
T Consensus        80 lv~E~~~~~---------l~~---~l---~~~~~~~--------~~~~~~------------~~~~qil~al~ylH~---  121 (288)
T cd07871          80 LVFEYLDSD---------LKQ---YL---DNCGNLM--------SMHNVK------------IFMFQLLRGLSYCHK---  121 (288)
T ss_pred             EEEECCCCH---------HHH---HH---HHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999667605---------999---99---8648989--------999999------------999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          .|+||.|+.|.|||+++ +++. ++||+.|.
T Consensus       122 ----~~IiHRDiKPeNILi~~~~~vK-l~DFGla~  151 (288)
T cd07871         122 ----RKILHRDLKPQNLLINEKGELK-LADFGLAR  151 (288)
T ss_pred             ----CCEEEEECCCHHEEECCCCCEE-EEEECCCC
T ss_conf             ----8927712450214787999789-91735550


No 179
>cd05588 STKc_aPKC STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytos
Probab=97.44  E-value=0.0028  Score=40.79  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-5899982166--99889---99999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      |..|.--+.|++... +| .|.+|+..+.  .....   +..+..+|..+.++    |.+++-.+   ..+-.++.+.++
T Consensus         3 LG~G~fG~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~H----p~Iv~l~~---~f~~~~~lylvm   75 (329)
T cd05588           3 IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNH----PFLVGLHS---CFQTESRLFFVI   75 (329)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCCCEEEE---EEEECCEEEEEE
T ss_conf             30387939999998899989999998378877989999999999999971599----98795999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.              ..+... ..++        ....            ......+...+..+.+      
T Consensus        76 Ey~~GGdL~--------------~~l~~~-~~l~--------e~~a------------~~~~~qi~~aL~ylH~------  114 (329)
T cd05588          76 EFVSGGDLM--------------FHMQRQ-RKLP--------EEHA------------RFYSAEISLALNFLHE------  114 (329)
T ss_pred             ECCCCCCHH--------------HHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             588988689--------------999874-9999--------9999------------9999999999999986------


Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             774440223464225627-96048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                       +|+||.|+.|.|||++. +.+. ++||+.|..
T Consensus       115 -~gIiHRDlKPeNILld~~g~iK-L~DFGlak~  145 (329)
T cd05588         115 -RGIIYRDLKLDNVLLDAEGHIK-LTDYGMCKE  145 (329)
T ss_pred             -CCCCCCCCCCCCEEECCCCCEE-ECCCCCCCC
T ss_conf             -5872363264210364789775-233220110


No 180
>cd05600 STKc_Sid2p_Dbf2p STKc_Sid2p_Dbf2p: Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) a
Probab=97.44  E-value=0.0064  Score=38.53  Aligned_cols=136  Identities=17%  Similarity=0.132  Sum_probs=71.6

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-58999821669--9889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.-. +| .|.+|+..+..  ...+   +..|.++|..+.     .|.+++-.+   ...-.+..+
T Consensus         6 i~~iG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~d~~~ly   77 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTK-----SEWLVKLLY---AFQDDEYLY   77 (333)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEE
T ss_conf             578331788499999988999899999985788658799999999999998679-----999885999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+..              .+.. ...+        ......            ....++...+..+.    
T Consensus        78 lvmEy~~gGdL~~--------------~l~~-~~~l--------~e~~a~------------~~~~qil~aL~ylH----  118 (333)
T cd05600          78 LAMEYVPGGDFRT--------------LLNN-LGVL--------SEDHAR------------FYMAEMFEAVDALH----  118 (333)
T ss_pred             EEEECCCCCCHHH--------------HHHH-CCCC--------CHHHHH------------HHHHHHHHHHHHHH----
T ss_conf             9997379981999--------------9987-5999--------999999------------99999999999998----


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                         .+|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       119 ---~~~IiHRDLKPeNILl~~~g~iK-L~DFGlak  149 (333)
T cd05600         119 ---ELGYIHRDLKPENFLIDASGHIK-LTDFGLSK  149 (333)
T ss_pred             ---HCCEEEEECCCCCCCCCCCCCEE-EEECCCCC
T ss_conf             ---58689862476542326789889-98766454


No 181
>cd06611 STKc_SLK_like Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the 
Probab=97.43  E-value=0.0051  Score=39.17  Aligned_cols=137  Identities=19%  Similarity=0.285  Sum_probs=74.9

Q ss_pred             EEECCCCCEEEEEEEEECC-CC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             1004668120017999439-95-89998216699889---9999999999853267755510010267787522451557
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-GT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      ++.|..|.--+.|+....+ ++ +.+|+...+ +...   +..|+++|..|.     -|.+|+-.+   .....+..+.+
T Consensus        10 ~~~iG~G~fg~V~~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~Ei~il~~l~-----HpnIv~l~~---~~~~~~~~~iv   80 (280)
T cd06611          10 IGELGDGAFGKVYKAQHKETGLFAAAKIIQIE-SEEELEDFMVEIDILSECK-----HPNIVGLYE---AYFYENKLWIL   80 (280)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEECC-CHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEE
T ss_conf             25980277849999998899969999998108-9899999999999998679-----989990999---99989989999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|..+..           .+.+.+   ..++        .....            .....+...+..+.+     
T Consensus        81 mE~~~gg~L~~-----------~l~~~~---~~~~--------e~~~~------------~i~~qi~~al~ylH~-----  121 (280)
T cd06611          81 IEFCDGGALDS-----------IMLELE---RGLT--------EPQIR------------YVCRQMLEALNFLHS-----  121 (280)
T ss_pred             EECCCCCCHHH-----------HHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf             97689995999-----------999748---9989--------99999------------999999999999998-----


Q ss_pred             CCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             7774440223464225627-96048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                        +++||.|+.|.|||+.. +.+. |.||+.+..
T Consensus       122 --~~iiHRDIKp~NILl~~~~~vK-l~DFG~s~~  152 (280)
T cd06611         122 --HKVIHRDLKAGNILLTLDGDVK-LADFGVSAK  152 (280)
T ss_pred             --CCCCEEECCHHHEEECCCCCEE-EEECCCCEE
T ss_conf             --8980330762651256899999-952777616


No 182
>cd07856 STKc_Sty1_Hog1 The catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic
Probab=97.43  E-value=0.0044  Score=39.60  Aligned_cols=141  Identities=17%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             CEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             605310046681200179994-3995-8999821669----988999999999998532677555100102677875224
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRM----NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~----~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +-.-++.|..|.--+.|+..- .+|+ +.+|+..+..    ....+..|+++|..|....+     ++-.+  .+..-.+
T Consensus        11 rY~i~~~IG~G~fg~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~iL~~l~HpnI-----V~l~~--~f~~~~~   83 (328)
T cd07856          11 RYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENI-----ISLSD--IFISPLE   83 (328)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCE-----EEEEE--EEECCCC
T ss_conf             6288179723718499999988999899999987111596899999999999986689898-----31677--9981897


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      ..+.++++. |..               |.++-   +.-+      ......            ......+...+..+.+
T Consensus        84 ~~~iv~e~~-g~~---------------L~~~l---~~~~------l~~~~~------------~~~~~Qil~aL~yLH~  126 (328)
T cd07856          84 DIYFVTELL-GTD---------------LHRLL---TSRP------LEKQFI------------QYFLYQILRGLKYVHS  126 (328)
T ss_pred             EEEEEEECC-CCC---------------HHHHH---HCCC------CCHHHH------------HHHHHHHHHHHHHHHH
T ss_conf             099999366-687---------------99999---7299------999999------------9999999999999987


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             65210777444022346422562796048731621356
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                             +|+||.|+.|.|||++++...-++||+.|..
T Consensus       127 -------~~IiHRDIKPeNILl~~~~~vKL~DFGla~~  157 (328)
T cd07856         127 -------AGVVHRDLKPSNILINENCDLKICDFGLARI  157 (328)
T ss_pred             -------CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             -------8855666755886888999869996777754


No 183
>cd06646 STKc_MAP4K5 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA
Probab=97.43  E-value=0.0064  Score=38.53  Aligned_cols=137  Identities=16%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             EECCCCCEEEEEEEE-ECCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             004668120017999-43995-899982166--99889999999999985326775551001026778752245155786
Q gi|254780795|r   28 QPIIHGVENSNFVIQ-TSKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~-t~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      +.|..|.--+.|+.. +.+|+ +.+|+....  .+...+..|+.+|..|...+|     ++-. |  ...-.+..+.+++
T Consensus        15 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~~~-~--~~~~~~~~~lvmE   86 (267)
T cd06646          15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNI-----VAYF-G--SYLSREKLWICME   86 (267)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE-----EEEE-E--EEEECCEEEEEEE
T ss_conf             898227684999999889997999999815751438999999999986899998-----2898-9--9988998899998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|.++..     .         +|.. ..++        ....            ......+...+..+.+       
T Consensus        87 y~~~g~L~~-----~---------l~~~-~~~~--------e~~i------------~~i~~qil~al~ylH~-------  124 (267)
T cd06646          87 YCGGGSLQD-----I---------YHVT-GPLS--------ELQI------------AYVCRETLQGLAYLHS-------  124 (267)
T ss_pred             ECCCCCHHH-----H---------HHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             148996999-----9---------9863-9999--------9999------------9999999999999998-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +++||.|+.|.|||++++...-|+||+.|..
T Consensus       125 ~~ivHRDlKp~NILl~~~~~vKl~DFGla~~  155 (267)
T cd06646         125 KGKMHRDIKGANILLTDNGDVKLADFGVAAK  155 (267)
T ss_pred             CCCEEECCCCHHEEECCCCCEEEECCCCCEE
T ss_conf             7987401670317997999999944868646


No 184
>cd06632 STKc_MEKK1_plant Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. ME
Probab=97.42  E-value=0.0021  Score=41.61  Aligned_cols=135  Identities=19%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEEEE-ECCCC-EEEEEECC----CCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             4668120017999-43995-89998216----6998---89999999999985326775551001026778752245155
Q gi|254780795|r   30 IIHGVENSNFVIQ-TSKGT-FILTIYEK----RMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        30 i~~G~~Ntny~v~-t~~~~-yiLri~e~----~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      |..|.--+.|+.. ..+|+ +.+|++..    ....   .++..|+.+|..|+.     |.+++-. |  ...-++..+.
T Consensus         8 iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~-~--~~~~~~~~~i   79 (258)
T cd06632           8 LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQH-----PNIVQYL-G--TEREEDNLYI   79 (258)
T ss_pred             EECCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEE
T ss_conf             511758199999988999899999985010221129999999999999986799-----8989399-9--9988999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+..    .       +.+.    ..+        .....            ......+...++.+.+    
T Consensus        80 vmEy~~~G~L~~----~-------l~~~----~~l--------~~~~~------------~~~~~qi~~aL~ylH~----  120 (258)
T cd06632          80 FLELVPGGSLAK----L-------LKKY----GSF--------PEPVI------------RLYTRQILLGLEYLHD----  120 (258)
T ss_pred             EEECCCCCCHHH----H-------HHHC----CCC--------CHHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             997869792999----9-------9874----999--------99999------------9999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             0777444022346422562796048731621356
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                         +|+||.|+.|.|||++.+...-+.||+.|..
T Consensus       121 ---~~iiHRDlKp~NiLi~~~~~iKl~DFGla~~  151 (258)
T cd06632         121 ---RNTVHRDIKGANILVDTNGVVKLADFGMAKQ  151 (258)
T ss_pred             ---CCCEEECCCHHHEEECCCCCEEECCCCCCEE
T ss_conf             ---8886500474664788999989853787167


No 185
>cd05622 STKc_ROCK1 STKc_ROCK1: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the developme
Probab=97.42  E-value=0.0035  Score=40.23  Aligned_cols=139  Identities=14%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             CEEEEEECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             60531004668120017999439-9-5899982166--9988---99999999999853267755510010267787522
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
                      +..-++-|..|.--+.|++.-.. | .|.+|+..+.  ....   .+..|.++|..+..     |.+++-.   ...+-.
T Consensus        44 DFeilk~IG~G~FG~V~la~~k~tg~~yAiKii~K~~~~~~~~~~~~~~E~~il~~l~h-----p~IVkl~---~~fqd~  115 (371)
T cd05622          44 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS-----PWVVQLF---YAFQDD  115 (371)
T ss_pred             HEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEE---EEEEEC
T ss_conf             70672388307381999999999996999999888995347899999999999986799-----9999188---999879


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
                      +..+.+++|++|..+.           ..+   ++  .+++        .....            ....++...+..+.
T Consensus       116 ~~lylVmEy~~GGdL~-----------~~l---~~--~~l~--------e~~a~------------~y~~qil~aL~yLH  159 (371)
T cd05622         116 RYLYMVMEYMPGGDLV-----------NLM---SN--YDVP--------EKWAR------------FYTAEVVLALDAIH  159 (371)
T ss_pred             CEEEEEEECCCCCCHH-----------HHH---HC--CCCC--------HHHHH------------HHHHHHHHHHHHHH
T ss_conf             9899999588897089-----------999---81--8989--------99999------------99999999999985


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             7652107774440223464225627-9604873162135
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      +       +|+||.|+.|.|||++. +.+ -++||+.|.
T Consensus       160 ~-------~gIiHRDLKPeNILld~~g~i-KL~DFGla~  190 (371)
T cd05622         160 S-------MGFIHRDVKPDNMLLDKSGHL-KLADFGTCM  190 (371)
T ss_pred             H-------CCEEECCCCCCCCCCCCCCCE-EEEECCCCE
T ss_conf             2-------866868767011522689988-982686611


No 186
>cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active
Probab=97.40  E-value=0.0026  Score=41.08  Aligned_cols=136  Identities=19%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             0046681200179994----399-58999821669---9---88999999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +.|..|.--+.|.++.    ++| .|.+|++.+..   .   .+.+-.+..+|..+..+    |.++.-..   ..+-.+
T Consensus         6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~~E~~~l~~l~~~----~~Iv~l~~---~~~~~~   78 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRC----PFLVTLHY---AFQTDT   78 (288)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC
T ss_conf             79414888399999985537879589999980788412267899999999999970599----97779999---999899


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      +.+.+++|++|..+..              .+-. ...++        .....            .....+...+..+.+
T Consensus        79 ~~yivmE~~~gg~L~~--------------~l~~-~~~l~--------e~~~~------------~~~~qil~~l~ylH~  123 (288)
T cd05583          79 KLHLILDYVNGGELFT--------------HLYQ-REHFT--------ESEVR------------VYIAEIVLALDHLHQ  123 (288)
T ss_pred             EEEEEEECCCCCCHHH--------------HHHH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH
T ss_conf             9999997889988999--------------9987-59989--------99999------------999999999999998


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             652107774440223464225627-9604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                             +|+||.|+.|.|||++. +++. ++||+.|.
T Consensus       124 -------~~ivHRDiKp~NILi~~~~~ik-l~DFG~a~  153 (288)
T cd05583         124 -------LGIIYRDIKLENILLDSEGHVV-LTDFGLSK  153 (288)
T ss_pred             -------CCEEECCCCHHHCCCCCCCCEE-EEECCCCE
T ss_conf             -------8903166771324345889989-98867573


No 187
>cd05581 STKc_PDK1 STKc_PDK1: Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential fo
Probab=97.40  E-value=0.0039  Score=39.92  Aligned_cols=137  Identities=17%  Similarity=0.212  Sum_probs=72.8

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-C-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             0046681200179994-399-5899982166-9-9---889999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-M-N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|++.. .+| .|.+|++.+. . .   ...+..|+++|..|.++    |.+++-.   ....-.++.+.
T Consensus         7 ~~iG~G~fg~V~~a~~~~tg~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~~H----p~Iv~l~---~~~~~~~~~yi   79 (279)
T cd05581           7 KILGEGSFSTVYLAKEKETNKEYAIKVLDKRHLIKEKKVKYVKREKEVLTRLNGH----PGIVKLY---YTFQDEENLYF   79 (279)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC----CCCCEEE---EEEEECCEEEE
T ss_conf             7973277909999998899989999998078905677899999999999842799----8978399---99998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.           ..|   +.. ..+        .....            ......+...++.+.+    
T Consensus        80 vmE~~~gG~L~-----------~~l---~~~-~~l--------~e~~~------------~~~~~qi~~gL~~lH~----  120 (279)
T cd05581          80 VLEYAENGELL-----------EYI---KKF-GSF--------DEKCT------------RFYTAEILLALEYLHS----  120 (279)
T ss_pred             EEECCCCCCHH-----------HHH---HHC-CCC--------CHHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             99488998789-----------999---876-998--------99999------------9999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .|+||.|+.|.|||++.+...-++||+-|.
T Consensus       121 ---~~ivHRDiKpeNILl~~~g~~kl~DFG~a~  150 (279)
T cd05581         121 ---KGIIHRDLKPENILLDKDGHIKITDFGTAK  150 (279)
T ss_pred             ---CCCCCCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             ---886305474666799899988992276654


No 188
>cd05609 STKc_MAST STKc_MAST: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAS
Probab=97.40  E-value=0.0037  Score=40.08  Aligned_cols=136  Identities=18%  Similarity=0.276  Sum_probs=70.8

Q ss_pred             EEECCCCCEEEEEEEEECC--CCEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             1004668120017999439--95899982166--9988---999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK--GTFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~--~~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.-.+  ..|.+|+..+.  ....   .+-.+.++|..+.     -|.+++-.+   ..+-.+..+
T Consensus         6 ~~~lG~G~fg~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~~~~~~~~y   77 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAE-----NPFVVSMFC---SFETRRHLC   77 (305)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEE
T ss_conf             578631889299999998999899999980677034469999999999998578-----997811136---998699899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+.+.    ..++        .....            .....+...+..+.+   
T Consensus        78 lvmEy~~gg~L~-----------~~i~~~----~~l~--------~~~~~------------~~~~qi~~aL~ylH~---  119 (305)
T cd05609          78 MVMEYVEGGDCA-----------TLLKNI----GPLP--------VDMAR------------MYFAETVLALEYLHN---  119 (305)
T ss_pred             EEEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999658998989-----------999864----9999--------99999------------999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||+++ +.+. ++||+.|.
T Consensus       120 ----~~IiHRDlKPeNILl~~~g~iK-l~DFGlak  149 (305)
T cd05609         120 ----YGIVHRDLKPDNLLITSMGHIK-LTDFGLSK  149 (305)
T ss_pred             ----CCCCCCCCCCCEEEECCCCCEE-EEECCCCC
T ss_conf             ----8961155761227988999889-98778773


No 189
>cd06625 STKc_MEKK3_like Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 a
Probab=97.39  E-value=0.0061  Score=38.63  Aligned_cols=140  Identities=15%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             HCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH------HHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             48998605310046681200179994-399-5899982166-998------89999999999985326775551001026
Q gi|254780795|r   18 EYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE------KDLPVFIELLHYISRNKLPCPIPIPRNDG   88 (316)
Q Consensus        18 ~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~------~~l~~~~~ll~~L~~~gipvP~pi~~~~G   88 (316)
                      +|.+|++     |..|.--+.|++.. .+| .|.+|++... .+.      ..+..|+.+|..|..     |.+++-.+ 
T Consensus         3 ~y~~~~~-----lG~G~fg~V~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~H-----p~Iv~~~~-   71 (263)
T cd06625           3 NWRRGKL-----LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQH-----ERIVQYYG-   71 (263)
T ss_pred             CCEEEEE-----EECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-
T ss_conf             8888319-----721758399999988999799999981211776789999999999999986799-----89895999-


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             77875224515578647887076899899999999864367530687543323112456457667520015522788999
Q gi|254780795|r   89 KLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEID  168 (316)
Q Consensus        89 ~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (316)
                        ....++..+.+++|++|..+.           ..+   .+. ..++        .....            .....+.
T Consensus        72 --~~~~~~~~~ivmEy~~~g~L~-----------~~l---~~~-~~~~--------e~~~~------------~~~~Qi~  114 (263)
T cd06625          72 --CLRDDETLSIFMEYMPGGSVK-----------DQL---KAY-GALT--------ETVTR------------KYTRQIL  114 (263)
T ss_pred             --EEEECCEEEEEEECCCCCCHH-----------HHH---HHC-CCCC--------HHHHH------------HHHHHHH
T ss_conf             --999899999999776988789-----------999---883-9999--------99999------------9999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             99998887652107774440223464225627-9604873162135
Q gi|254780795|r  169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      ..+..+.+       +++||.|+.|.|||.+. +++. ++||+.|.
T Consensus       115 ~al~ylH~-------~~IiHRDlKp~NiLl~~~g~vK-l~DFG~a~  152 (263)
T cd06625         115 EGVEYLHS-------NMIVHRDIKGANILRDSAGNVK-LGDFGASK  152 (263)
T ss_pred             HHHHHHHH-------CCEEEEECCHHHEEECCCCCEE-EEECCCCE
T ss_conf             99999998-------9946720768986888999999-98378761


No 190
>cd05605 STKc_GRK4_like STKc_GRK4_like: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (
Probab=97.39  E-value=0.0041  Score=39.74  Aligned_cols=138  Identities=17%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             0046681200179994-399-5899982166-9988----9999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +-|..|.--+.|++.. .+| .|.+|+.++. ....    ..-.|+++|..|..     |.++.-.   ...+-++..+.
T Consensus         6 ~~lG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----p~Iv~l~---~~~~~~~~~~l   77 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKINS-----PFVVSLA---YAYETKDALCL   77 (285)
T ss_pred             EEECCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE---EEEEECCEEEE
T ss_conf             996138082999999999998999999837882005789999999999987799-----9899398---99997998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      ++++++|..+.    ..+...+         ..+++        ....            ......+...+..+.+    
T Consensus        78 vmE~~~gGdL~----~~i~~~~---------~~~l~--------e~~~------------~~~~~qil~al~ylH~----  120 (285)
T cd05605          78 VLTLMNGGDLK----FHIYNMG---------NPGFE--------EERA------------VFYAAEITCGLEHLHR----  120 (285)
T ss_pred             EEEECCCCCHH----HHHHHHC---------CCCCC--------HHHH------------HHHHHHHHHHHHHHHH----
T ss_conf             99964798489----9999727---------89999--------9999------------9999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++++...-+.||+.|.
T Consensus       121 ---~~IiHRDlKPeNiLl~~~g~vKl~DFGla~  150 (285)
T cd05605         121 ---ERIVYRDLKPENILLDDYGHVRISDLGLAV  150 (285)
T ss_pred             ---CCEEECCCCCCCCCCCCCCCEEEEECCCEE
T ss_conf             ---892655257321012268948981457127


No 191
>cd05573 STKc_ROCK_NDR_like STKc_ROCK_NDR_like: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. 
Probab=97.39  E-value=0.0057  Score=38.83  Aligned_cols=137  Identities=17%  Similarity=0.216  Sum_probs=70.5

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-995-899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.-. .|+ |.+|+..+.  ....+   +..+.++|..+     ..|.+++-..   ..+-.+..+
T Consensus         6 ~~~lG~G~fg~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~iv~l~~---~f~~~~~~y   77 (354)
T cd05573           6 IKVIGRGAFGEVWLVRKKDTGKVYAMKILRKSDMLKRNQVAHVRAERDILADA-----DSPWIVKLYY---SFQDEEYLY   77 (354)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE
T ss_conf             56863286839999998899989999998278813879999999999999867-----9999893999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+.+-    ..++        .....            .....+...+..+.    
T Consensus        78 lvmEy~~ggdL~-----------~~l~~~----~~l~--------e~~~~------------~~~~qi~~al~~lH----  118 (354)
T cd05573          78 LVMEYMPGGDLM-----------TLLIKY----DVFP--------EETAR------------FYIAELVLAIDSVH----  118 (354)
T ss_pred             EEEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHH----
T ss_conf             999688998888-----------999866----9999--------99999------------99999999999999----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .+|+||.|+.|.|||++.+...-++||+.|.
T Consensus       119 ---~~~iiHRDlKPeNILl~~~g~vKL~DFGlak  149 (354)
T cd05573         119 ---KLGFIHRDIKPDNILIDADGHIKLADFGLCK  149 (354)
T ss_pred             ---HCCEEECCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             ---7891751352565898899988980254630


No 192
>cd05585 STKc_YPK1_like STKc_YPK1_like: Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development.
Probab=97.39  E-value=0.0054  Score=38.99  Aligned_cols=133  Identities=19%  Similarity=0.256  Sum_probs=67.6

Q ss_pred             CCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             6812001799943-99-5899982166--9988999---99999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|++.-. .| .|.+|+..+.  ....++.   .|..+|..+     ..|.+++-..   ..+-.+..+.+++|
T Consensus         3 ~G~fG~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l-----~hp~Iv~l~~---~f~~~~~~ylvmEy   74 (312)
T cd05585           3 KGSFGKVMQVRKKDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQV-----NCPFIVPLKF---SFQSPEKLYFVLAF   74 (312)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEEEEEEC
T ss_conf             680829899998899989999998378856989999999999999867-----9998894999---99989999999966


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+..              .|.+. ..+        ......            .....+...+..+.+       +
T Consensus        75 ~~gG~L~~--------------~l~~~-~~l--------~e~~~~------------~~~~qil~aL~ylH~-------~  112 (312)
T cd05585          75 INGGELFH--------------HLQKE-GRF--------DLSRAR------------FYTAELLCALECLHK-------F  112 (312)
T ss_pred             CCCCCHHH--------------HHHHC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH-------C
T ss_conf             79988899--------------99875-999--------999999------------999999999999998-------8


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             444022346422562796048731621356
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      ++||.|+.|.|||++.+...-++||+.|..
T Consensus       113 ~IiHRDLKPeNILl~~~g~iKL~DFGla~~  142 (312)
T cd05585         113 NVIYRDLKPENILLDYQGHIALCDFGLCKL  142 (312)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCHHHC
T ss_conf             950576763223225889787501222110


No 193
>cd05072 PTKc_Lyn Catalytic Domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=97.38  E-value=0.0092  Score=37.49  Aligned_cols=142  Identities=15%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             05310046681200179994399-5899982166-998899999999999853267755510010267787522451557
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.-.+.|..|.--+.|+....++ +..+|+.+.. .+.+.+..|+++|..|+...|     ++-. |  ...-.+..+.+
T Consensus         8 ~~~~~~IG~G~fg~Vy~~~~~~~~~VAvK~~~~~~~~~~~f~~E~~~l~~l~HpnI-----V~~~-g--~~~~~~~~~lv   79 (261)
T cd05072           8 IKMVKKLGAGQFGEVWMGFYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKL-----VRLY-A--VVTKEEPIYII   79 (261)
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEEECCEEEEE
T ss_conf             79723983288869999999999999999986675579999999999986899888-----7299-9--99889988999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..           .|   +. .+      .......   ..+         .....+...+..+.+     
T Consensus        80 ~E~~~~GsL~~-----------~l---~~-~~------~~~~~~~---~~~---------~~~~qia~gL~yLH~-----  121 (261)
T cd05072          80 TEYMAKGSLLD-----------FL---KS-DE------GSKVQLP---KLI---------DFSAQIAEGMAYIEK-----  121 (261)
T ss_pred             EEECCCCCHHH-----------HH---HH-CC------CCCCCHH---HHH---------HHHHHHHHHHHHHHH-----
T ss_conf             98079993899-----------98---53-66------8887999---999---------999999999999986-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        ++++|+|+.+.|||++.+...-|.||+.|.
T Consensus       122 --~~iiHrDlK~~NiLl~~~~~~Kl~DFGls~  151 (261)
T cd05072         122 --KNYIHRDLRAANVLVSESLMCKIADFGLAR  151 (261)
T ss_pred             --CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             --892666146374898899979998558756


No 194
>cd07849 STKc_ERK1_2_like The catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK ki
Probab=97.38  E-value=0.0036  Score=40.13  Aligned_cols=141  Identities=12%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCC
Q ss_conf             5310046681200179994-3995-899982166998---8999999999998532677-55510010267787522451
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~   98 (316)
                      .-++-|..|.--+.|+..- .+|+ +.+|........   ...-.|+.+|..|...++- .=..+...+   + ...+..
T Consensus         8 ~i~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~H~nIv~l~~v~~~~~---~-~~~~~~   83 (336)
T cd07849           8 QNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPS---F-ESFNDV   83 (336)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC---C-CCCCEE
T ss_conf             881797325086999999889998999999841448189999999999998768999474788995377---3-557668


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.++++++|.-         ..+   +   .  ...++        ....            ......+...+..+.+  
T Consensus        84 yiv~E~~~~~L---------~~~---~---~--~~~l~--------~~~i------------~~~~~qil~aL~~lH~--  124 (336)
T cd07849          84 YIVQELMETDL---------YKL---I---K--TQHLS--------NDHI------------QYFLYQILRGLKYIHS--  124 (336)
T ss_pred             EEEEECCCCCH---------HHH---H---H--CCCCC--------HHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             99983278767---------999---8---6--28999--------9999------------9999999999999987--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           .|+||.|+.|.|||++.+...-++||+.|.
T Consensus       125 -----~~IiHRDiKPeNILl~~~~~vKL~DFGla~  154 (336)
T cd07849         125 -----ANVLHRDLKPSNLLLNTNCDLKICDFGLAR  154 (336)
T ss_pred             -----CCCEECCCCHHHEEECCCCCEEECCCCCCE
T ss_conf             -----887535675687798799988842445221


No 195
>cd06634 STKc_TAO2 Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4
Probab=97.37  E-value=0.0063  Score=38.56  Aligned_cols=139  Identities=15%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             5310046681200179994-3995-899982166--9988---9999999999985326775551001026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k   97 (316)
                      ..++.|..|.--+.|++.- .+|+ +.+|+....  ...+   .+..|+.+|..|..     |.+++-.+   ...-.+.
T Consensus        18 ~~l~~IG~G~fG~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~~~~---~~~~~~~   89 (308)
T cd06634          18 SDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH-----PNTIQYRG---CYLREHT   89 (308)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCE
T ss_conf             420797138881999999889995999999864542476999999999999997789-----99846987---8832886


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.+++|++|...            ..+ +.|.  ..++        .....            .....+...+..+.+ 
T Consensus        90 ~~lVmEy~~G~~~------------~ll-~~~~--~~l~--------e~~~~------------~i~~qil~gL~yLH~-  133 (308)
T cd06634          90 AWLVMEYCLGSAS------------DLL-EVHK--KPLQ--------EVEIA------------AVTHGALQGLAYLHS-  133 (308)
T ss_pred             EEEEEEECCCCHH------------HHH-HHHC--CCCC--------HHHHH------------HHHHHHHHHHHHHHH-
T ss_conf             7999992489748------------899-9705--8999--------99999------------999999999999998-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             521077744402234642256279604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                            +++||.|+.|+|||++++...-|.||+.|.
T Consensus       134 ------~~IIHRDLKP~NILl~~~g~vKl~DFG~A~  163 (308)
T cd06634         134 ------HNMIHRDVKAGNILLSEPGLVKLGDFGSAS  163 (308)
T ss_pred             ------CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             ------886346676220799899989998456763


No 196
>cd05627 STKc_NDR2 STKc_NDR2: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite
Probab=97.37  E-value=0.013  Score=36.44  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=70.0

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++... .| .|.+|+..+.  ...+.   +..+.++|..+.     .|.+++..+   ...-.+..+
T Consensus         6 lk~lG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~y   77 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEAD-----GAWVVKMFY---SFQDKRNLY   77 (360)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEE
T ss_conf             468012888299999988999899999980688458999999999999998789-----998774999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+   .+. ..+        ......            .....+...+..+.    
T Consensus        78 lvmEy~~gGdL~-----------~~l---~~~-~~l--------~e~~~~------------~~~~qi~~aL~~lH----  118 (360)
T cd05627          78 LIMEFLPGGDMM-----------TLL---MKK-DTL--------SEEATQ------------FYIAETVLAIDAIH----  118 (360)
T ss_pred             EEEECCCCCCHH-----------HHH---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH----
T ss_conf             999588997089-----------997---616-998--------999999------------99999999999998----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .+|+||.|+.|.|||++.+...-++||+.|.
T Consensus       119 ---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~  149 (360)
T cd05627         119 ---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCT  149 (360)
T ss_pred             ---HCCEEECCCCCCEEEECCCCCEEECCCCCCC
T ss_conf             ---5768861266662788799988984267652


No 197
>cd06623 PKc_MAPKK_plant_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania m
Probab=97.37  E-value=0.011  Score=37.01  Aligned_cols=139  Identities=17%  Similarity=0.245  Sum_probs=74.5

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             100466812001799943-99-5899982166998---899999999999853267755510010267787522451557
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      ++.|..|.--+.|+.... +| .|.+|+.......   ..+..|+++|..|...+|     ++-..   ...-.+..+.+
T Consensus         6 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~HpnI-----V~~~~---~~~~~~~~~lv   77 (264)
T cd06623           6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYV-----VKCYG---AFYKEGEISIV   77 (264)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEEE---EEEECCEEEEE
T ss_conf             58983178939999999899989999998214697899999999999986799988-----82999---99889999999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|..+..           .+   ..   .      ..+......            .....+...+..+.+     
T Consensus        78 mEy~~~G~L~~-----------~i---~~---~------~~~~e~~~~------------~~~~qi~~gl~yLH~-----  117 (264)
T cd06623          78 LEYMDGGSLAD-----------LL---KK---V------GKIPEPVLA------------YIARQILKGLDYLHT-----  117 (264)
T ss_pred             EECCCCCCHHH-----------HH---HH---C------CCCCHHHHH------------HHHHHHHHHHHHHHH-----
T ss_conf             97899984999-----------99---73---4------898999999------------999999999999987-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             777444022346422562796048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                       .+++||.|+.|.|||++.+...-+.||+.|..
T Consensus       118 -~~~IiHRDlKp~NILl~~~~~iKl~DFG~a~~  149 (264)
T cd06623         118 -KRHIIHRDIKPSNLLINSKGEVKIADFGISKV  149 (264)
T ss_pred             -CCCEECCCCCHHHEEECCCCCEEEECCCCCEE
T ss_conf             -08988044788996988999999921878858


No 198
>cd05593 STKc_PKB_gamma STKc_PKB_gamma: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent
Probab=97.37  E-value=0.0046  Score=39.44  Aligned_cols=132  Identities=16%  Similarity=0.235  Sum_probs=67.5

Q ss_pred             CCCEEEEEEEEEC-CCC-EEEEEECCC--CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             6812001799943-995-899982166--998899---999999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQTS-KGT-FILTIYEKR--MNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|++.-. +|+ |.+|+..+.  ...+++   -.|.++|..+.     -|.+++-.   ....-.++.+.+++|
T Consensus         5 ~G~fG~V~l~~~k~tg~~~AiKii~k~~~~~~~~~~~~~~E~~iL~~l~-----Hp~Iv~l~---~~f~~~~~lylVmEy   76 (325)
T cd05593           5 KGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTR-----HPFLTSLK---YSFQTKDRLCFVMEY   76 (325)
T ss_pred             ECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEE---EEEEECCEEEEEEEC
T ss_conf             0708599999988999899999982688548799999999999998689-----99887699---999989999999985


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+.           ..+   .+. ..+        ......            .....+...+..+.+       +
T Consensus        77 ~~gG~L~-----------~~l---~~~-~~l--------~e~~~~------------~~~~qil~aL~yLH~-------~  114 (325)
T cd05593          77 VNGGELF-----------FHL---SRE-RVF--------SEDRTR------------FYGAEIVSALDYLHS-------G  114 (325)
T ss_pred             CCCCCHH-----------HHH---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH-------C
T ss_conf             5999899-----------998---635-899--------999999------------999999999999975-------9


Q ss_pred             CEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             4440223464225627-96048731621356
Q gi|254780795|r  185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      ++||.|+.|.|||++. +.+. ++||+.|..
T Consensus       115 ~IiHRDLKPeNILld~~g~iK-L~DFGlak~  144 (325)
T cd05593         115 KIVYRDLKLENLMLDKDGHIK-ITDFGLCKE  144 (325)
T ss_pred             CEEECCCCCCCCCCCCCCCEE-ECCCCHHHH
T ss_conf             888511575456636789785-322023342


No 199
>cd05085 PTKc_Fer Catalytic Domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=97.36  E-value=0.0094  Score=37.44  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             CCCEEEEEEEEECCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf             681200179994399-589998216699889---9999999999853267755510010267787522451557864788
Q gi|254780795|r   32 HGVENSNFVIQTSKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG  107 (316)
Q Consensus        32 ~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G  107 (316)
                      .|.--+.|+....++ ...+|++.+....+.   .-.|+.+|..|.     -|.+++-. |  +....+..+.+++|.+|
T Consensus         5 ~G~fg~Vy~g~~~~~~~VAvK~~~~~~~~~~~~~f~~E~~il~~l~-----HpnIv~l~-g--~~~~~~~~~iv~Ey~~~   76 (250)
T cd05085           5 KGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYD-----HPNIVKLI-G--VCTQRQPIYIVMELVPG   76 (250)
T ss_pred             ECCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEEEEEECCCC
T ss_conf             0899389999988999999999894378689999999999998679-----99983199-9--99889989999975899


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             70768998999999998643675306875433231124564576675200155227889999999888765210777444
Q gi|254780795|r  108 SPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGII  187 (316)
Q Consensus       108 ~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~I  187 (316)
                      ..+..              -|+..        ...+.   +...         -.....+...+..+.+       +++|
T Consensus        77 g~L~~--------------~l~~~--------~~~l~---~~~~---------~~~~~~ia~gl~yLH~-------~~ii  115 (250)
T cd05085          77 GDFLS--------------FLRKK--------KDELK---TKQL---------VKFALDAAAGMAYLES-------KNCI  115 (250)
T ss_pred             CCHHH--------------HHHHC--------CCCCC---HHHH---------HHHHHHHHHHHHHHHH-------CCCC
T ss_conf             82899--------------99746--------89999---9999---------9999999999999842-------9964


Q ss_pred             ECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             02234642256279604873162135
Q gi|254780795|r  188 HADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       188 HgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      |+|+.+.|||++++...-|.||+.+.
T Consensus       116 HrDlK~~NiLv~~~~~~Kl~DFGls~  141 (250)
T cd05085         116 HRDLAARNCLVGENNVLKISDFGMSR  141 (250)
T ss_pred             CCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             47537463668899968999667788


No 200
>cd06631 STKc_YSK4 Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=97.35  E-value=0.0032  Score=40.45  Aligned_cols=132  Identities=19%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             CCCEEEEEEEEECCCC-EEEEEECCC-C----CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             6812001799943995-899982166-9----98---8999999999998532677555100102677875224515578
Q gi|254780795|r   32 HGVENSNFVIQTSKGT-FILTIYEKR-M----NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        32 ~G~~Ntny~v~t~~~~-yiLri~e~~-~----~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      .|.--+.|.-...+|+ +.+|..... .    ..   +.+..|+.+|..|..     |.+++--+ .  ..-++..+.++
T Consensus        10 ~G~fg~V~~~~~~~g~~vAiK~v~~~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pniv~~~~-~--~~~~~~~~ivm   81 (265)
T cd06631          10 KGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKH-----VNIVQYLG-T--CLDDNTISIFM   81 (265)
T ss_pred             CCCCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-E--EEECCEEEEEE
T ss_conf             1789199999958999999999981553214559999999999999986899-----99726999-9--98899899999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.           ..+   ++. ..++        ....            ......+...+..+.+      
T Consensus        82 Ey~~gg~L~-----------~~l---~~~-~~~~--------e~~~------------~~~~~qi~~gl~yLH~------  120 (265)
T cd06631          82 EFVPGGSIS-----------SIL---NRF-GPLP--------EPVF------------CKYTKQILDGVAYLHN------  120 (265)
T ss_pred             ECCCCCCHH-----------HHH---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             915989489-----------999---864-9999--------9999------------9999999999999998------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       121 -~giiHRDlKp~NiLl~~~~~vKl~DFG~ak  150 (265)
T cd06631         121 -NCVVHRDIKGNNVMLMPNGIIKLIDFGCAR  150 (265)
T ss_pred             -CCCCCCCCCHHHEEECCCCCEEEECCCCCC
T ss_conf             -888313278899238899989990375761


No 201
>cd06618 PKc_MKK7 Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and 
Probab=97.34  E-value=0.014  Score=36.25  Aligned_cols=145  Identities=17%  Similarity=0.277  Sum_probs=71.3

Q ss_pred             CCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             98605310046681200179994-3995-89998216699889---9999999999853267755510010267787522
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
                      +++..-++.|..|.--+.|++.- ..|+ +.+|+..+....++   +..++..|..+    ...|.+++-.+   ...-+
T Consensus        14 l~dy~il~~IG~G~fG~Vy~a~~~~t~~~vAvK~i~~~~~~~~~~~~~~e~~~l~~~----~~hpnIv~l~~---~~~~~   86 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKS----HDCPYIVKCYG---YFITD   86 (296)
T ss_pred             HHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEEE---EEEEC
T ss_conf             674399889820889299999999999799999985024907999999999999985----79995656999---99989


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
                      +..+.++++.+|.            ++..+-+.+   ..++        ..    ...        .....+...+..+.
T Consensus        87 ~~~~ivmE~~~~~------------l~~l~~~~~---~~~~--------e~----~~~--------~~~~qi~~al~ylH  131 (296)
T cd06618          87 SDVFICMELMSTC------------LDKLLKRIQ---GPIP--------ED----ILG--------KMTVAIVKALHYLK  131 (296)
T ss_pred             CEEEEEEEECCCC------------HHHHHHHHC---CCCC--------HH----HHH--------HHHHHHHHHHHHHH
T ss_conf             9999999949987------------799999726---9999--------99----999--------99999999999998


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             76521077744402234642256279604873162135
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .      ..|+||.|+.|.|||++++...-|+||+.|.
T Consensus       132 ~------~~~IiHRDIKP~NILi~~~g~iKi~DFGla~  163 (296)
T cd06618         132 E------KHGVIHRDVKPSNILLDASGNVKLCDFGISG  163 (296)
T ss_pred             H------HCCEEECCCCCCCEEECCCCCEEEEECCCEE
T ss_conf             7------3798733246663578699988995458404


No 202
>cd05570 STKc_PKC STKc_PKC: Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide 
Probab=97.34  E-value=0.0082  Score=37.83  Aligned_cols=135  Identities=18%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-5899982166--998899---9999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      |..|.--+.|++.-. +| .|.+|+..+.  ....++   ..+.++|..+.++    |.+++-.+   ..+-.++.+.++
T Consensus         3 IG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~h----p~Iv~l~~---~f~~~~~lylVm   75 (318)
T cd05570           3 LGKGSFGKVLLAELKGTDELYAIKVLKKDVVLQDDDVECTMTEKRVLALAGKH----PFLTQLHS---CFQTKDRLFFVM   75 (318)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEEE---EEEECCEEEEEE
T ss_conf             64288919999999999989999998278853867899999999999860189----97767999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.              ..+.+. ..+        ......            .....+...+..+.       
T Consensus        76 Ey~~gGdL~--------------~~l~~~-~~l--------~e~~a~------------~~~~qi~~aL~yLH-------  113 (318)
T cd05570          76 EYVNGGDLM--------------YHIQQQ-GRF--------PEPRAR------------FYAAEIVLGLQFLH-------  113 (318)
T ss_pred             ECCCCCCHH--------------HHHHHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH-------
T ss_conf             668998789--------------987545-899--------999999------------99999999999997-------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+++||.|+.|.|||++.+...-++||+.|.
T Consensus       114 ~~~IiHRDLKPeNILl~~~g~iKL~DFGlak  144 (318)
T cd05570         114 ERGIIYRDLKLDNVLLDAEGHIKIADFGMCK  144 (318)
T ss_pred             HCCEEECCCCCCCCEECCCCCEEECCCCHHH
T ss_conf             4977867567654216578978860340334


No 203
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.33  E-value=0.0043  Score=39.61  Aligned_cols=145  Identities=17%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             00466812001799943-99-58999821669988-----9999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEK-----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~-----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|---+.|+..-. .| +..+|+.......+     ....|..++..|.     =|.+++--+   +...++.++.
T Consensus         8 r~LGrGGMG~VYlArD~~LgR~VALKvLr~~ls~d~~~reRFlREAriaArL~-----HPNIV~VYD---~gedg~~~Yi   79 (933)
T PRK13184          8 RLIGKGGMGEVYLAYDPVCSRKVALKRIREDLSDNPLLKKRFLREAKIAADLI-----HPGVVPVYT---ICSDGDPVYY   79 (933)
T ss_pred             EEEEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEE
T ss_conf             79852788789999988999748999829366679899999999999998589-----939892988---6878995389


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +|+|++|.++.           +.|..+.+. ...+........+....            .+...+...++...     
T Consensus        80 VMEyVeG~TL~-----------~LLr~l~qk-~~Lp~elae~~sv~~lL------------~If~QIc~ALayAH-----  130 (933)
T PRK13184         80 TMPYIEGYTLK-----------SLLKSVWQK-ESLSKELAEKTSVGAFL------------SIFHKICATVEYVH-----  130 (933)
T ss_pred             EEECCCCCCHH-----------HHHHHHCCC-CCCCHHHHHCCCHHHHH------------HHHHHHHHHHHHHH-----
T ss_conf             98158998789-----------999762114-78863442102288999------------99999999999999-----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf             07774440223464225627-960487316213
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS  212 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~  212 (316)
                        .+|+||.|+.|+||++.. +++. |+||+-|
T Consensus       131 --s~GIVHRDLKPaNILLg~~GeVK-LlDFGLA  160 (933)
T PRK13184        131 --SRGILHRDLKPDNILLGLFSEVV-ILDWGAA  160 (933)
T ss_pred             --HCCCCCCCCCHHHEEECCCCCEE-ECCCCCC
T ss_conf             --78683588977997888999889-9127654


No 204
>cd05633 STKc_GRK3 STKc_GRK3: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory recept
Probab=97.32  E-value=0.0042  Score=39.67  Aligned_cols=135  Identities=19%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             CCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHH---HH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             681200179994-399-5899982166-99889---99-99999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQT-SKG-TFILTIYEKR-MNEKD---LP-VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~---l~-~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|.+.. ++| .|.+|+..+. ....+   +. .+..++..++.  ..+|.++.-..   ...-.++.+.+++|
T Consensus         4 ~G~fG~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~e~~~~~~~~~--~~~p~iv~~~~---~~~~~~~~~lvmE~   78 (279)
T cd05633           4 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST--GDCPFIVCMTY---AFHTPDKLCFILDL   78 (279)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEE---EEEECCEEEEEEEC
T ss_conf             08370999999889998999999847880146778999999999999852--79997878999---99989999999984


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+.           ..+.+     .+       .........            ....+...+..+.+       +
T Consensus        79 ~~gg~L~-----------~~l~~-----~~-------~l~e~~~~~------------~~~qil~aL~ylH~-------~  116 (279)
T cd05633          79 MNGGDLH-----------YHLSQ-----HG-------VFSEKEMRF------------YATEIILGLEHMHN-------R  116 (279)
T ss_pred             CCCCCHH-----------HHHHH-----CC-------CCCHHHHHH------------HHHHHHHHHHHHHH-------C
T ss_conf             5998699-----------99987-----59-------999999999------------99999999999987-------8


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      |+||.|+.|.|||++.+...-++||+.|+
T Consensus       117 ~IiHRDlKP~NILl~~~g~~Kl~DFGla~  145 (279)
T cd05633         117 FVVYRDLKPANILLDEHGHVRISDLGLAC  145 (279)
T ss_pred             CCEECCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf             98741047333240368976965010556


No 205
>cd07854 STKc_MAPK4_6 The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell c
Probab=97.32  E-value=0.0046  Score=39.47  Aligned_cols=147  Identities=12%  Similarity=0.162  Sum_probs=70.5

Q ss_pred             CEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCC-CCCCCCCCCHH---HHHHHH
Q ss_conf             605310046681200179994-399-58999821669--98899999999999853267-75551001026---778752
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKL-PCPIPIPRNDG---KLYGFL   94 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gi-pvP~pi~~~~G---~~~~~~   94 (316)
                      +..-++.|..|.--+.|...- ..| .+.+|......  ....+-.|+.+|..|...++ .+-..+.+.+.   ..+...
T Consensus         6 RY~il~~LG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~rEi~il~~l~H~nIv~~~~~~~~~~~~~~~~~~~~   85 (342)
T cd07854           6 RYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSL   85 (342)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             55883894217480999999889998999999973898889999999999986799898909999802786531111322


Q ss_pred             --CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             --245155786478870768998999999998643675306875433231124564576675200155227889999999
Q gi|254780795|r   95 --CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC  172 (316)
Q Consensus        95 --~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (316)
                        .+..+.+++|++|.      ..   .   .+       +.      ........            ......+...+.
T Consensus        86 ~~~~~~~iv~e~~~~~------L~---~---~~-------~~------~~l~e~~i------------~~~~~Qil~aL~  128 (342)
T cd07854          86 TELNSVYIVQEYMETD------LA---N---VL-------EQ------GPLSEEHA------------RLFMYQLLRGLK  128 (342)
T ss_pred             CCCCEEEEEEECCCCC------HH---H---HH-------HC------CCCCHHHH------------HHHHHHHHHHHH
T ss_conf             2354489998077868------99---9---99-------72------99899999------------999999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             8887652107774440223464225627-9604873162135
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      .+.+       .|+||.|+.|.|||++. +.+.-++||+.|.
T Consensus       129 ylH~-------~~IiHRDiKPeNILl~~~~~~vKl~DFGla~  163 (342)
T cd07854         129 YIHS-------ANVLHRDLKPANVFINTEDLVLKIGDFGLAR  163 (342)
T ss_pred             HHHH-------CCCEECCCCHHHEEEECCCCEEEECCCCEEE
T ss_conf             9988-------8665264757885883799848752450136


No 206
>cd07850 STKc_JNK The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different
Probab=97.32  E-value=0.0059  Score=38.75  Aligned_cols=143  Identities=15%  Similarity=0.261  Sum_probs=71.9

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCH-
Q ss_conf             99848998605310046681200179994-399-58999821669-9---88999999999998532677555100102-
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM-N---EKDLPVFIELLHYISRNKLPCPIPIPRND-   87 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~-   87 (316)
                      ++++|.+     ++.|..|.--+.|+..- ..| .+.+|+..+.. +   ...+-.|+.+|..|...+|     ++-.+ 
T Consensus        14 v~~rY~i-----~~~lG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~HpnI-----v~l~~~   83 (353)
T cd07850          14 VLKRYQN-----LKPIGSGAQGIVCAAYDTVTKQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNI-----IGLLNA   83 (353)
T ss_pred             CCCCCEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CCEEEE
T ss_conf             3026288-----369731408499999988999899999988345382889999999999986799699-----938889


Q ss_pred             ---HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             ---67787522451557864788707689989999999986436753068754332311245645766752001552278
Q gi|254780795|r   88 ---GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLK  164 (316)
Q Consensus        88 ---G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  164 (316)
                         ...+. -.+..+.++++++|.-        + +   .+   +   ..++        .....            ...
T Consensus        84 f~~~~~~~-~~~~~yivmE~~~~~L--------~-~---~~---~---~~l~--------~~~~~------------~i~  124 (353)
T cd07850          84 FTPQKSLE-EFQDVYLVMELMDANL--------C-Q---VI---Q---MDLD--------HERMS------------YLL  124 (353)
T ss_pred             EECCCCCC-CCCEEEEEEECCCCCH--------H-H---HH---H---CCCC--------HHHHH------------HHH
T ss_conf             84066433-2763899994179989--------9-9---98---6---0399--------99999------------999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8999999988876521077744402234642256279604873162135
Q gi|254780795|r  165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..+...+..+.+       .|+||.|+.|.|||++.+...-++||+.|.
T Consensus       125 ~Qil~aL~ylH~-------~gIiHRDLKPeNILl~~~~~vKL~DFGlA~  166 (353)
T cd07850         125 YQMLCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR  166 (353)
T ss_pred             HHHHHHHHHHHH-------CCCEECCCCHHHEEECCCCCEEECCCCHHE
T ss_conf             999999999987-------893556687577799899978622312200


No 207
>cd05595 STKc_PKB_beta STKc_PKB_beta: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insuli
Probab=97.31  E-value=0.0079  Score=37.93  Aligned_cols=133  Identities=14%  Similarity=0.206  Sum_probs=69.3

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-5899982166--9988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... .| .|.+|+..+.  ...+++.   .|..+|..+.     -|.+++-..   ...-.++.+.+++
T Consensus         4 G~G~fG~V~~~~~k~tg~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~l~-----Hp~Iv~l~~---~f~~~~~lylVmE   75 (323)
T cd05595           4 GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-----HPFLTALKY---AFQTHDRLCFVME   75 (323)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEEEE
T ss_conf             22728499999988999899999980688559899999999999998679-----998885999---9998999999996


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.           ..+.+   . ..++        .....            .....+...+..+.+       
T Consensus        76 y~~gGdL~-----------~~l~~---~-~~~~--------e~~a~------------~~~~qi~~aL~yLH~-------  113 (323)
T cd05595          76 YANGGELF-----------FHLSR---E-RVFT--------EERAR------------FYGAEIVSALEYLHS-------  113 (323)
T ss_pred             CCCCCCHH-----------HHHHH---C-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             56998489-----------99986---5-9999--------99999------------999999999999987-------


Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             74440223464225627-96048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      +++||.|+.|.|||++. +.+. ++||+.|..
T Consensus       114 ~~IiHRDLKPeNILl~~~g~iK-L~DFGlak~  144 (323)
T cd05595         114 RDVVYRDIKLENLMLDKDGHIK-ITDFGLCKE  144 (323)
T ss_pred             CCEECCCCCHHHCCCCCCCCEE-ECCCCCCEE
T ss_conf             7902365471222303689665-223240022


No 208
>cd05608 STKc_GRK1 STKc_GRK1: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod 
Probab=97.31  E-value=0.0081  Score=37.85  Aligned_cols=135  Identities=15%  Similarity=0.126  Sum_probs=66.9

Q ss_pred             CCEEEEEEEEEC-CC-CEEEEEECCCC--CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             812001799943-99-58999821669--98---8999999999998532677555100102677875224515578647
Q gi|254780795|r   33 GVENSNFVIQTS-KG-TFILTIYEKRM--NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        33 G~~Ntny~v~t~-~~-~yiLri~e~~~--~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
                      |.--+.|++... +| .|.+|+..+..  ..   +.+..|.++|..|....+     ++-.   ...+-++..+.+++|+
T Consensus         4 G~fg~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~---~~~~~~~~~~lvmE~~   75 (280)
T cd05608           4 GGFGEVSACQMRATGKMYACKKLNKKRLKKRKGYEGAMVEKRILARVHSRFI-----VSLA---YAFQTKTDLCLVMTLM   75 (280)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEEEEEECC
T ss_conf             8574999999999997999999807882256899999999999986699878-----8599---9998799789999726


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88707689989999999986436753068754332311245645766752001552278899999998887652107774
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG  185 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g  185 (316)
                      +|..+..    .+          +...+.     .........            ......+...+..+.+       ++
T Consensus        76 ~gG~L~~----~i----------~~~~~~-----~~~~~e~~~------------~~~~~qi~~aL~ylH~-------~~  117 (280)
T cd05608          76 NGGDLRY----HI----------YNVDEE-----NPGFPEPRA------------CFYTAQIILGLEHLHQ-------HR  117 (280)
T ss_pred             CCCCHHH----HH----------HHHHHC-----CCCCCHHHH------------HHHHHHHHHHHHHHHH-------CC
T ss_conf             8991899----99----------875541-----799899999------------9999999999999987-------89


Q ss_pred             EEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             4402234642256279604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +||.|+.|.|||++++...-|.||+.|.
T Consensus       118 IiHRDlKPeNILl~~~g~vKl~DFGla~  145 (280)
T cd05608         118 IVYRDLKPENVLLDNDGNVRISDLGLAV  145 (280)
T ss_pred             CEEEECCCCCEEECCCCCEEEECCCCCE
T ss_conf             2680147321214699988984046426


No 209
>KOG0578 consensus
Probab=97.31  E-value=0.0048  Score=39.30  Aligned_cols=153  Identities=19%  Similarity=0.269  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHC-C----CCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHHH-HHHHHHHHHHHHHCCC
Q ss_conf             8999999999848-9----986053100466812001799943-99-5899982166-99889-9999999999853267
Q gi|254780795|r    7 PPQKEIQSFVQEY-A----IGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEKD-LPVFIELLHYISRNKL   77 (316)
Q Consensus         7 ls~~el~~il~~y-~----lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~~-l~~~~~ll~~L~~~gi   77 (316)
                      ++.+++...+..- .    ......++.|..|..-..|.-.-. .+ .-..|.+..+ ....+ |=.|+.+|.-+     
T Consensus       253 ~~~~~~~~~l~~v~~~~dP~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~-----  327 (550)
T KOG0578         253 VSKEEILAKLKRVVSQGDPRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDL-----  327 (550)
T ss_pred             CHHHHHHHHHHEECCCCCHHHHHCCHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHC-----
T ss_conf             208899987531215788224320123325666665565666267745778998721487122357799998746-----


Q ss_pred             CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             75551001026778752245155786478870768998999999998643675306875433231124564576675200
Q gi|254780795|r   78 PCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD  157 (316)
Q Consensus        78 pvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~  157 (316)
                      ..|.++.-.+ .+  .+++..|++|+|++|..+...-...+                                       
T Consensus       328 ~H~NiVnfl~-Sy--lv~deLWVVMEym~ggsLTDvVt~~~---------------------------------------  365 (550)
T KOG0578         328 HHPNIVNFLD-SY--LVGDELWVVMEYMEGGSLTDVVTKTR---------------------------------------  365 (550)
T ss_pred             CCHHHHHHHH-HH--CCCCCEEEEEECCCCCCCCHHHHCCC---------------------------------------
T ss_conf             6538988777-76--03560178762027774000110121---------------------------------------


Q ss_pred             CCCHHHHHH----HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCC
Q ss_conf             155227889----9999998887652107774440223464225627-960487316213568
Q gi|254780795|r  158 KVDEDLKKE----IDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCND  215 (316)
Q Consensus       158 ~~~~~~~~~----l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~  215 (316)
                       +++...+.    +...+.++.       -+|+||-|+..||||... +.+. +.||+||..-
T Consensus       366 -~~E~qIA~Icre~l~aL~fLH-------~~gIiHrDIKSDnILL~~~g~vK-ltDFGFcaqi  419 (550)
T KOG0578         366 -MTEGQIAAICREILQGLKFLH-------ARGIIHRDIKSDNILLTMDGSVK-LTDFGFCAQI  419 (550)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHH-------HCCEEEECCCCCEEEECCCCCEE-EEEEEEEECC
T ss_conf             -557899999999999999987-------45604403552127852688578-7521133115


No 210
>cd05114 PTKc_Tec_Rlk Catalytic Domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=97.31  E-value=0.0049  Score=39.24  Aligned_cols=141  Identities=18%  Similarity=0.209  Sum_probs=76.3

Q ss_pred             EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             05310046681200179994399-5899982166-998899999999999853267755510010267787522451557
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.-.+.|..|.--+.|+.+...+ +..+|..... .+.+++-.|+++|..|...+     +++-. |  +....+..+.+
T Consensus         6 ~~~~~~iG~G~fG~V~~g~~~~~~~VAiK~l~~~~~~~~~~~~E~~il~~l~Hpn-----IV~~~-g--~~~~~~~~~iv   77 (256)
T cd05114           6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPK-----LVQLY-G--VCTQQKPLYIV   77 (256)
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-----CCEEE-E--EEEECCEEEEE
T ss_conf             7986897138897899999889989999998657798899999999998689989-----86099-9--99889989999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..           .|   ..        +......   ...         -.+...+...+..+.+     
T Consensus        78 ~Ey~~~GsL~~-----------~l---~~--------~~~~l~~---~~~---------~~i~~~ia~gl~yLH~-----  118 (256)
T cd05114          78 TEFMENGCLLN-----------YL---RQ--------RQGKLSK---DML---------LSMCQDVCEGMEYLER-----  118 (256)
T ss_pred             EECCCCCCHHH-----------HH---HH--------CCCCCCH---HHH---------HHHHHHHHHHHHHHHH-----
T ss_conf             98389995899-----------99---76--------3799999---999---------9999999999999987-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        ++++|+|+.+.|||++.+...-+.||+.|.
T Consensus       119 --~~ivHrDlK~~NiLl~~~~~vKl~DFGla~  148 (256)
T cd05114         119 --NSFIHRDLAARNCLVSSTGVVKVSDFGMTR  148 (256)
T ss_pred             --CCEECCCCCCCEEEECCCCCEEEECCCCCC
T ss_conf             --991367688300889899978994387650


No 211
>cd07878 STKc_p38beta_MAPK11 The catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11,
Probab=97.31  E-value=0.01  Score=37.22  Aligned_cols=143  Identities=13%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHCCC
Q ss_conf             5310046681200179994-399-589998216699----8899999999999853267755510010-26778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EKDLPVFIELLHYISRNKLPCPIPIPRN-DGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gipvP~pi~~~-~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|+... ..| .+.+|+......    ...+..|+.+|.+|....+.  ..+-.- ....+ ...+.
T Consensus        18 ~~~~~IG~G~fG~Vy~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H~nIv--~l~~~f~~~~~~-~~~~~   94 (343)
T cd07878          18 QNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVI--GLLDVFTPATSI-ENFNE   94 (343)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC--EEEEEECCCCCC-CCCCE
T ss_conf             873697316084999999899998999999882012358899999999999866898941--178885146655-55876


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.++++. |..+               ..+-+. ..++        .....            .....+...+..+.+ 
T Consensus        95 ~~lv~e~~-g~~L---------------~~~~k~-~~l~--------e~~i~------------~i~~Qil~aL~ylHs-  136 (343)
T cd07878          95 VYLVTNLM-GADL---------------NNIVKC-QKLS--------DEHVQ------------FLIYQLLRGLKYIHS-  136 (343)
T ss_pred             EEEEEECC-CCCH---------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-
T ss_conf             99998058-9679---------------999862-9999--------99999------------999999999999988-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             5210777444022346422562796048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                            +|+||.|+.|.|||++++...-++||+.|..
T Consensus       137 ------~~IIHRDLKP~NILl~~~~~vKL~DFGlA~~  167 (343)
T cd07878         137 ------AGIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEEEEECCCCEE
T ss_conf             ------8855466872554686778779841446611


No 212
>cd06653 STKc_MEKK3_like_1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating
Probab=97.30  E-value=0.0023  Score=41.44  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HCCCCE
Q ss_conf             46681200179994-399-589998216699----88---999999999998532677555100102677875-224515
Q gi|254780795|r   30 IIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF-LCKKPA   99 (316)
Q Consensus        30 i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~-~~~k~~   99 (316)
                      |..|.--+.|++.. +.| .|.+|+......    ..   .+..|+.+|..|..     |.+++-.+  .+.. -+++.+
T Consensus        10 iG~G~fg~Vy~~~~~~tg~~~AvK~i~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~--~~~~~~~~~~~   82 (264)
T cd06653          10 LGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRH-----DRIVQYYG--CLRDPEEKKLS   82 (264)
T ss_pred             EECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE--EEECCCCCEEE
T ss_conf             722868499999988999799999985673246659999999999999987799-----99783999--99938998899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++.           ..+   .. ...++        ....            ......+...+..+.+   
T Consensus        83 ivmEy~~gg~L~-----------~~l---~~-~~~l~--------e~~~------------~~~~~qi~~al~ylH~---  124 (264)
T cd06653          83 IFVEYMPGGSIK-----------DQL---KA-YGALT--------ENVT------------RRYTRQILQGVSYLHS---  124 (264)
T ss_pred             EEEECCCCCCHH-----------HHH---HH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             999814959889-----------999---87-49999--------9999------------9999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||.+.+...-++||+.|.
T Consensus       125 ----~~iiHRDiKp~NIL~~~~~~vKl~DFG~a~  154 (264)
T cd06653         125 ----NMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (264)
T ss_pred             ----CCEEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             ----997766577899548899999998689872


No 213
>cd05591 STKc_nPKC_epsilon STKc_nPKC_epsilon: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes 
Probab=97.30  E-value=0.0035  Score=40.22  Aligned_cols=134  Identities=16%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             CCCCEEEEEEEEECC-C-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             668120017999439-9-58999821669--988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTSK-G-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~~-~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++.... | .|.+|+..+..  ...++.   .+.++|...    ..-|.+++-.+   ..+-.++.+.+++
T Consensus         4 G~G~fG~V~la~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~~----~~Hp~Iv~l~~---~f~~~~~lylvmE   76 (321)
T cd05591           4 GKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALA----AKHPFLTALHC---CFQTKDRLFFVME   76 (321)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEE---EEEECCEEEEEEE
T ss_conf             4387929999999999989999998078853846799999999999984----79998895999---9998999999995


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+.+ ...++        .....            .....+...+..+.+       
T Consensus        77 y~~gGdL~--------------~~l~~-~~~l~--------e~~~~------------~~~~qi~~aL~ylH~-------  114 (321)
T cd05591          77 YVNGGDLM--------------FQIQR-SRKFD--------EPRSR------------FYAAEVTLALMFLHR-------  114 (321)
T ss_pred             CCCCCCHH--------------HHHHH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             88998189--------------99987-49999--------99999------------999999999999985-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       115 ~gIiHRDLKPeNILl~~~g~iKL~DFGlak  144 (321)
T cd05591         115 HGVIYRDLKLDNILLDAEGHCKLADFGMCK  144 (321)
T ss_pred             CCEEECCCCCCCCCCCCCCCEEECCCCHHH
T ss_conf             977867677655330578857741312322


No 214
>cd05584 STKc_p70S6K STKc_p70S6K: Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p7
Probab=97.30  E-value=0.0045  Score=39.49  Aligned_cols=135  Identities=21%  Similarity=0.248  Sum_probs=69.4

Q ss_pred             EECCCCCEEEEEEEEE----CCCC-EEEEEECCCC---CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             0046681200179994----3995-8999821669---9889---99999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQT----SKGT-FILTIYEKRM---NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t----~~~~-yiLri~e~~~---~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +.|..|.--+.|++.-    +.|+ |.+|+..+..   +..+   +..|.++|..+.     -|.+++-.+   ..+-++
T Consensus         2 k~LG~G~fG~V~la~~~~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~~E~~il~~l~-----Hp~Iv~l~~---~f~~~~   73 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVK-----HPFIVDLIY---AFQTGG   73 (323)
T ss_pred             CEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECC
T ss_conf             486228981899999745588895899999807884406788999999999998679-----989890999---999899


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      ..+.+++|++|..+.              ..+.+  .+       ........            ....++...+..+.+
T Consensus        74 ~lylVmEy~~GGdL~--------------~~l~~--~~-------~~~e~~~~------------~~~~qi~~aL~ylH~  118 (323)
T cd05584          74 KLYLILEYLSGGELF--------------MHLER--EG-------IFMEDTAC------------FYLSEISLALEHLHQ  118 (323)
T ss_pred             EEEEEEECCCCCCHH--------------HHHHH--CC-------CCCHHHHH------------HHHHHHHHHHHHHHH
T ss_conf             999999647999799--------------99976--49-------99999999------------999999999999974


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             652107774440223464225627-9604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                             +|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       119 -------~gIiHRDlKPeNILl~~~g~iK-L~DFGlak  148 (323)
T cd05584         119 -------QGIIYRDLKPENILLDAQGHVK-LTDFGLCK  148 (323)
T ss_pred             -------CCEEECCCCCCCCCCCCCCCEE-ECCHHHHH
T ss_conf             -------9789573662134657899877-41024555


No 215
>cd07879 STKc_p38delta_MAPK13 The catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MA
Probab=97.30  E-value=0.0055  Score=38.92  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC-H---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCC
Q ss_conf             5310046681200179994-399-589998216699-8---8999999999998532677-5551001026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN-E---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~-~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|+... ..| .+.+|+..+... .   .....|+.+|.+|...++. +-....+..  .. .....
T Consensus        18 ~i~~~IG~G~fG~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~~~~~~~~--~~-~~~~~   94 (342)
T cd07879          18 TSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAV--SG-DEFQD   94 (342)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC--CC-CCCCE
T ss_conf             9707972271849999998899989999998711227799999999999999746998300478885046--56-66646


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.+++|+.+.                   +.+.. +-++      .....            ......+...+..+.+ 
T Consensus        95 ~yiv~e~~~~~-------------------l~~~~-~~~l------~e~~i------------~~i~~qil~aL~ylH~-  135 (342)
T cd07879          95 FYLVMPYMQTD-------------------LQKIM-GHPL------SEDKV------------QYLVYQMLCGLKYIHS-  135 (342)
T ss_pred             EEEEECCCCCC-------------------HHHHH-CCCC------CHHHH------------HHHHHHHHHHHHHHHH-
T ss_conf             99996775243-------------------99996-5999------99999------------9999999999999987-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             5210777444022346422562796048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                            .|+||.|+.|.|||++++...-++||+.|..
T Consensus       136 ------~gIiHRDlKPeNILl~~~~~vKL~DFGlAr~  166 (342)
T cd07879         136 ------AGIIHRDLKPGNLAVNEDCELKILDFGLARH  166 (342)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             ------8845576866884686778669985657744


No 216
>cd07880 STKc_p38gamma_MAPK12 The catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MA
Probab=97.30  E-value=0.005  Score=39.23  Aligned_cols=143  Identities=15%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHCCC
Q ss_conf             5310046681200179994-399-5899982166-998---89999999999985326775551001-026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLPCPIPIPR-NDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gipvP~pi~~-~~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|.+.- .+| .+.+|+..+. .+.   ...-.++.+|.+|...++-  ..+.. .....+.. .+.
T Consensus        18 ~i~~~IG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~h~nIv--~l~~~f~~~~~~~~-~~~   94 (343)
T cd07880          18 RDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVI--GLLDVFTPDLSLDR-FHD   94 (343)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCC-CCE
T ss_conf             885797216274999999889998999999873443869999999999999866898956--17789832775455-660


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.+++|+ |..+           +..+    +. ..++        ....            ......+...+..+.+ 
T Consensus        95 ~ylv~e~~-g~~L-----------~~~~----k~-~~l~--------e~~i------------~~i~~Qil~aL~ylH~-  136 (343)
T cd07880          95 FYLVMPFM-GTDL-----------GKLM----KH-EKLS--------EDRI------------QFLVYQMLKGLKYIHA-  136 (343)
T ss_pred             EEEEEECC-CCCH-----------HHHH----HC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-
T ss_conf             79999468-8679-----------9998----64-9989--------9999------------9999999999999997-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             5210777444022346422562796048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                            .|+||.|+.|.|||++++...-++||+.|..
T Consensus       137 ------~gIiHRDLKPeNILl~~~~~vKl~DFGla~~  167 (343)
T cd07880         137 ------AGIIHRDLKPGNLAVNEDCELKILDFGLARQ  167 (343)
T ss_pred             ------CCCCCCCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             ------8964156743656886778579734567744


No 217
>cd07862 STKc_CDK6 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cyt
Probab=97.29  E-value=0.011  Score=37.10  Aligned_cols=143  Identities=19%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             EEECCCCCEEEEEEEEE--CCCCE-EEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHCCC
Q ss_conf             10046681200179994--39958-999821669988----99999999999853267755510010267787--52245
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT--SKGTF-ILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG--FLCKK   97 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t--~~~~y-iLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~--~~~~k   97 (316)
                      ++.|..|.--+.|++..  +.+++ .+|+.......+    ..-.|+.+|.+|..  +.-|.+++-.+=-...  .-.++
T Consensus         6 ~~~iG~G~fg~V~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~~--~~HpnIv~l~d~~~~~~~~~~~~   83 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET--FEHPNVVRLFDVCTVSRTDRETK   83 (290)
T ss_pred             EEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEEEEECCCCCCCE
T ss_conf             1586414380999999989899899999984000330448999999999997615--68999888987885224578876


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.++++++|.-            ...+-+...  .++        ....    .        ......+...+..+.+ 
T Consensus        84 ~~iv~E~~~~~L------------~~~l~~~~~--~~~--------~~~~----i--------~~i~~Qil~al~ylH~-  128 (290)
T cd07862          84 LTLVFEHVDQDL------------TTYLDKVPE--PGV--------PTET----I--------KDMMFQLLRGLDFLHS-  128 (290)
T ss_pred             EEEEEECCCCCH------------HHHHHHCCC--CCC--------CHHH----H--------HHHHHHHHHHHHHHHH-
T ss_conf             999997799988------------999986667--898--------9999----9--------9999999999999998-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             52107774440223464225627-9604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                            .++||.|+.|.|||++. +++. ++||+.|.
T Consensus       129 ------~~IiHRDlKPeNILl~~~~~vK-l~DFGla~  158 (290)
T cd07862         129 ------HRVVHRDLKPQNILVTSSGQIK-LADFGLAR  158 (290)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEE-ECCCCCCE
T ss_conf             ------8934354645235898999979-73234305


No 218
>pfam07714 Pkinase_Tyr Protein tyrosine kinase.
Probab=97.29  E-value=0.0092  Score=37.49  Aligned_cols=136  Identities=15%  Similarity=0.202  Sum_probs=70.4

Q ss_pred             ECCCCCEEEEEEEEEC-----CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             0466812001799943-----99-589998216699889---99999999998532677555100102677875224515
Q gi|254780795|r   29 PIIHGVENSNFVIQTS-----KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~-----~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      .|..|.--+.|+..-.     .+ ++.+|++........   +-.|+++|..|.     -|.+++-. |  +..-.+..+
T Consensus         6 ~iG~G~fg~Vy~~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~~l~~l~-----HpnIV~~~-~--~~~~~~~~~   77 (258)
T pfam07714         6 KLGEGAFGEVYKGTLKGLGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS-----HPNIVRLL-G--VCTQGEPLY   77 (258)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEE
T ss_conf             995087839999999378775684999999894489899999999999998689-----99884287-7--997899889


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++..           .   |+.....++           +...         ..+...+...+..+.+   
T Consensus        78 lvmEy~~~G~L~~-----------~---l~~~~~~l~-----------~~~~---------~~i~~qi~~gl~yLH~---  120 (258)
T pfam07714        78 IVTEYMPGGDLLD-----------F---LRKHGEKLT-----------LKDL---------LQMALQIAKGMEYLES---  120 (258)
T ss_pred             EEEECCCCCCHHH-----------H---HHHCCCCCC-----------HHHH---------HHHHHHHHHHHHHHHH---
T ss_conf             9997689990899-----------9---986589979-----------9999---------9999999999999985---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          +++||+|+.|.|||++++...-+.||+.|.
T Consensus       121 ----~~iiHrDiKp~NiLl~~~~~~Kl~DFGla~  150 (258)
T pfam07714       121 ----KNFVHRDLAARNCLVSENLVVKISDFGLSR  150 (258)
T ss_pred             ----CCEEECCCCCEEEEECCCCCEEEEECCCCE
T ss_conf             ----997516676305898799939998467876


No 219
>cd07852 STKc_MAPK15 The catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extrac
Probab=97.29  E-value=0.002  Score=41.77  Aligned_cols=143  Identities=17%  Similarity=0.255  Sum_probs=70.5

Q ss_pred             HHHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             999848998605310046681200179994-3995-899982166-9988---999999999998532677555100102
Q gi|254780795|r   14 SFVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRND   87 (316)
Q Consensus        14 ~il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~   87 (316)
                      .++++|.+.     +.|..|.--+.|+... .+|+ |.+|...+. .+..   ..-.|+.+|..|..+    |.+++-.+
T Consensus         4 ~i~~rY~i~-----~~iG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~~H----pnIv~l~~   74 (337)
T cd07852           4 HILRKYEIL-----QKLGKGAYGIVWKAIDRKTGEVVALKKIFDAFRNATDAQRTFREIMFLQELGDH----PNIVKLLN   74 (337)
T ss_pred             HHHHCCEEE-----EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHCC----CCEEEEEE
T ss_conf             165228870-----698427382999999889998999999882652958899999999999984079----99706989


Q ss_pred             HHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             67787522-45155786478870768998999999998643675306875433231124564576675200155227889
Q gi|254780795|r   88 GKLYGFLC-KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKE  166 (316)
Q Consensus        88 G~~~~~~~-~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (316)
                        .+..-+ ...+.+++|++|.                   ||...+.      +.......            ......
T Consensus        75 --~~~~~~~~~~ylV~Ey~~~~-------------------L~~~i~~------~~~~e~~~------------~~i~~q  115 (337)
T cd07852          75 --VIKAENDKDIYLVFEYMETD-------------------LHAVIRA------NILEDIHK------------RYIMYQ  115 (337)
T ss_pred             --EEEECCCCEEEEEEECCCCC-------------------HHHHHHC------CCCCHHHH------------HHHHHH
T ss_conf             --99816997799999347998-------------------8999863------89999999------------999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCC
Q ss_conf             99999988876521077744402234642256279-60487316213
Q gi|254780795|r  167 IDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFS  212 (316)
Q Consensus       167 l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~  212 (316)
                      +...+..+.+       .|+||.|+.|.|||++.+ ++. ++||+.|
T Consensus       116 il~aL~ylH~-------~gIiHRDIKPeNILl~~~~~iK-l~DFGla  154 (337)
T cd07852         116 LLKALKYIHS-------GNVIHRDLKPSNILLNSDCRVK-LADFGLA  154 (337)
T ss_pred             HHHHHHHHHH-------CCCCCCCCCHHHEEECCCCCCC-CCCCCEE
T ss_conf             9999999987-------8854177866886886889851-2445412


No 220
>cd05592 STKc_nPKC_theta_delta STKc_nPKC_theta_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-del
Probab=97.28  E-value=0.0033  Score=40.38  Aligned_cols=134  Identities=18%  Similarity=0.183  Sum_probs=66.7

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-58999821669--988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... .| .|.+|+..+..  ...++.   .+.++|..    ...-|.+++-..   ...-.+..+.+++
T Consensus         4 G~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~e~~il~~----~~~hp~Iv~l~~---~f~~~~~~ylvmE   76 (316)
T cd05592           4 GKGSFGKVMLAELKGTNEYYAIKALKKDVVLEDDDVECTMVERRVLIL----AWEHPFLTHLFC---TFQTKEHLFFVME   76 (316)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCEEEEEEE
T ss_conf             638893999999999998999999827882371479999999999998----479997866999---9998999999996


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+... ..++        .....            .....+...+..+.+       
T Consensus        77 y~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~yLH~-------  114 (316)
T cd05592          77 YLNGGDLM--------------FHIQSS-GRFD--------EARAR------------FYAAEIICGLQFLHK-------  114 (316)
T ss_pred             CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             78998889--------------998655-9999--------99999------------999999999999997-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       115 ~~IiHRDlKPeNILld~~g~vKL~DFGlak  144 (316)
T cd05592         115 KGIIYRDLKLDNVLLDRDGHIKIADFGMCK  144 (316)
T ss_pred             CCCEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf             890531147766573789988982056330


No 221
>cd05587 STKc_cPKC STKc_cPKC:  Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and ga
Probab=97.28  E-value=0.0061  Score=38.65  Aligned_cols=137  Identities=18%  Similarity=0.225  Sum_probs=69.8

Q ss_pred             EEECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             1004668120017999439-9-5899982166--9988999---999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.-.+ | .|.+|+..+.  ....++.   .+.++|..+....    -+++-. +  ..+-.++.+
T Consensus         5 lk~LG~G~fG~V~la~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~~~~~~----~Iv~l~-~--~f~~~~~ly   77 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP----FLTQLH-S--CFQTMDRLY   77 (324)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCC----EEEEEE-E--EEEECCEEE
T ss_conf             279631769099999999999899999983788328578999999999998636998----283899-9--999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.              ..+.+. ..++        .....            .....+...+..+.+   
T Consensus        78 lvmEy~~GGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~ylH~---  119 (324)
T cd05587          78 FVMEYVNGGDLM--------------YHIQQV-GKFK--------EPHAV------------FYAAEIAIGLFFLHS---  119 (324)
T ss_pred             EEEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999487998489--------------999980-9999--------99999------------999999999999998---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             107774440223464225627-9604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                          +|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       120 ----~~IiHRDLKPeNILl~~~g~iK-L~DFGlak  149 (324)
T cd05587         120 ----KGIIYRDLKLDNVMLDAEGHIK-IADFGMCK  149 (324)
T ss_pred             ----CCCEECCCCCCCEEECCCCCEE-EEECCHHH
T ss_conf             ----8946055675332575689788-60043123


No 222
>cd06635 STKc_TAO1 Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an im
Probab=97.27  E-value=0.0024  Score=41.24  Aligned_cols=157  Identities=15%  Similarity=0.225  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHCCCC-CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999848998-6053100466812001799943-99-5899982166--998---8999999999998532677
Q gi|254780795|r    7 PPQKEIQSFVQEYAIG-QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLP   78 (316)
Q Consensus         7 ls~~el~~il~~y~lg-~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gip   78 (316)
                      |...||..+.-.=|.+ ....++.|..|.--+.|+..-. .| .|.+|.....  .+.   ..+..|+++|..|...   
T Consensus         9 ~~~~~~~~~~~~~d~~k~y~~l~~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~Hp---   85 (317)
T cd06635           9 LKDPEIAELFFKEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHP---   85 (317)
T ss_pred             CCCCCHHHHCCCCCHHHCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC---
T ss_conf             89987666300789566387108951381829999998899979999998633516879999999999999977998---


Q ss_pred             CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             55510010267787522451557864788707689989999999986436753068754332311245645766752001
Q gi|254780795|r   79 CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDK  158 (316)
Q Consensus        79 vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~  158 (316)
                        .+++-.+   ...-++..+.+++|++|..      .      ..+ ..+.  ..++        .....         
T Consensus        86 --nIV~~~~---~~~~~~~~~ivmEy~~G~~------~------~l~-~~~~--~~l~--------e~~~~---------  128 (317)
T cd06635          86 --NSIEYKG---CYLREHTAWLVMEYCLGSA------S------DLL-EVHK--KPLQ--------EVEIA---------  128 (317)
T ss_pred             --CCCEEEE---EEEECCEEEEEEEECCCCH------H------HHH-HHHC--CCCC--------HHHHH---------
T ss_conf             --9980999---9998998899999528985------8------999-9826--9999--------99999---------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             552278899999998887652107774440223464225627-96048731621356
Q gi|254780795|r  159 VDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       159 ~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                         .....+...+..+.+       .|+||.|+.|.|||+++ +.+. +.||+.|..
T Consensus       129 ---~i~~qil~aL~ylH~-------~~IiHRDLKp~NILl~~~~~vK-l~DFG~a~~  174 (317)
T cd06635         129 ---AITHGALQGLAYLHS-------HNMIHRDIKAGNILLTEPGQVK-LADFGSASI  174 (317)
T ss_pred             ---HHHHHHHHHHHHHHH-------CCCEEEECCHHHEEECCCCCEE-EEECCCCEE
T ss_conf             ---999999999999997-------8933322548886788999989-994568744


No 223
>cd07851 STKc_p38 The catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and
Probab=97.26  E-value=0.011  Score=37.05  Aligned_cols=142  Identities=14%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             EEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC-CH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCC
Q ss_conf             53100466812001799943-99-58999821669-98---8999999999998532677-5551001026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM-NE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~-~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|..... .| .+.+|+..+.. +.   ..+-.|+.+|.+|...+|- .-......+  .. ...+.
T Consensus        18 ~i~~~IG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~d~f~~~~--~~-~~~~~   94 (343)
T cd07851          18 QNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPAS--SL-EDFQD   94 (343)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CC-CCCCE
T ss_conf             8846983172949999998899989999998822249799999999999999757999541788883177--65-55765


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.+++++.| .+     .   ++   +.     ...++        .....            .....+...+..+.+ 
T Consensus        95 ~yiv~e~~~~-~L-----~---~~---i~-----~~~l~--------~~~i~------------~i~~qil~aL~ylH~-  136 (343)
T cd07851          95 VYLVTHLMGA-DL-----N---NI---VK-----CQKLS--------DDHIQ------------FLVYQILRGLKYIHS-  136 (343)
T ss_pred             EEEEECCCCC-CH-----H---HH---HH-----HCCCC--------HHHHH------------HHHHHHHHHHHHHHH-
T ss_conf             8999747897-89-----9---99---97-----08999--------99999------------999999999999987-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             521077744402234642256279604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                            .|+||.|+.|.|||++++...-|+||+.|.
T Consensus       137 ------~~IiHRDlKPeNILl~~~~~vKI~DFGlA~  166 (343)
T cd07851         137 ------AGIIHRDLKPSNIAVNEDCELKILDFGLAR  166 (343)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEEECCCCCCE
T ss_conf             ------876337686365588688978871476762


No 224
>cd05068 PTKc_Frk_like Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=97.26  E-value=0.011  Score=37.06  Aligned_cols=141  Identities=18%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             EEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             5310046681200179994399-5899982166-9988999999999998532677555100102677875224515578
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      .-.+.|..|.--+.|+....++ +..+|..... .+.+++-.|+++|.-|+.     |.+++-. |  ....++..+.++
T Consensus         9 ~~~~~iG~G~fg~Vy~~~~~~~~~VAvK~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g--~~~~~~~~~iv~   80 (261)
T cd05068           9 QLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRH-----PKLIQLY-A--VCTLEEPIYIVT   80 (261)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCEEE-E--EEEECCEEEEEE
T ss_conf             9867983187809999998999899999984788999999999999986899-----6899099-9--999899899999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|.++..     .         |+..  +     .....   +...         -.....+...+..+.+      
T Consensus        81 E~~~~G~L~~-----~---------l~~~--~-----~~~l~---~~~~---------~~i~~qia~gl~yLH~------  121 (261)
T cd05068          81 ELMKYGSLLE-----Y---------LQGG--A-----GRALK---LPQL---------IDMAAQVASGMAYLEA------  121 (261)
T ss_pred             ECCCCCCHHH-----H---------HHHC--C-----CCCCC---HHHH---------HHHHHHHHHHHHHHHH------
T ss_conf             9069998999-----9---------9637--8-----88899---9999---------9999999999999986------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +++||+|+.+.|||++.+...-|.||+.+.
T Consensus       122 -~~iiHrDLKp~NILl~~~~~vKl~DFGls~  151 (261)
T cd05068         122 -QNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             -CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             -797206566155898899968998343212


No 225
>cd05039 PTKc_Csk_like Catalytic Domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk 
Probab=97.25  E-value=0.0041  Score=39.75  Aligned_cols=140  Identities=11%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             EECCCCCEEEEEEEEECCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             00466812001799943995899982166-99889999999999985326775551001026778752245155786478
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSKGTFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK  106 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~~~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~  106 (316)
                      +.|..|.--+.|+-.....+..+|++... ...+++-.|+++|..|..     |.+++-. |  +....+..+.+++|++
T Consensus        12 ~~iG~G~fg~Vy~g~~~g~~VAiK~~~~~~~~~~~f~~E~~~l~~l~H-----pNIv~~~-g--~~~~~~~~~iV~Ey~~   83 (256)
T cd05039          12 ATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRH-----PNLVQLL-G--VVLQGNPLYIVTEYMA   83 (256)
T ss_pred             EEEEECCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEEEECCC
T ss_conf             399208980899999999199999988886569999999999985899-----8882088-8--9988999999997589


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             87076899899999999864367530687543323112456457667520015522788999999988876521077744
Q gi|254780795|r  107 GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGI  186 (316)
Q Consensus       107 G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~  186 (316)
                      |.++..     .         ++...       .....   +....         .....+...+..+.+       +++
T Consensus        84 ~gsL~~-----~---------l~~~~-------~~~l~---~~~~~---------~i~~~ia~gl~yLH~-------~~i  123 (256)
T cd05039          84 KGSLVD-----Y---------LRSRG-------RAVIT---LAQQL---------GFALDVCEGMEYLEE-------KNF  123 (256)
T ss_pred             CCCHHH-----H---------HHHCC-------CCCCC---HHHHH---------HHHHHHHHHHHHHHH-------CCC
T ss_conf             997899-----9---------97548-------98999---99999---------999999999999975-------893


Q ss_pred             EECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf             40223464225627960487316213568
Q gi|254780795|r  187 IHADLFPDNVLFYNNKIMGLIDFYFSCND  215 (316)
Q Consensus       187 IHgDl~~~NiL~~~~~i~giIDF~~~~~~  215 (316)
                      +|+|+.+.|||++++...-+.||+.+...
T Consensus       124 iHrDlK~~NiLl~~~~~~Kl~DFGls~~~  152 (256)
T cd05039         124 VHRDLAARNVLVSEDLVAKVSDFGLAKEA  152 (256)
T ss_pred             EECCCCCCEEEECCCCCEEEEECCCCEEC
T ss_conf             32546751388899994899305467006


No 226
>cd05623 STKc_MRCK_alpha STKc_MRCK_alpha: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway.
Probab=97.25  E-value=0.01  Score=37.17  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             EEECCCCCEEEEEEEEECC-CC-EEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             1004668120017999439-95-899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-GT-FILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~~-yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++...+ |+ |.+|+..+.  ....+   +..+.++|..+     .-|.+++-..   ..+-.+..+
T Consensus         6 ~~~IG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y   77 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG-----DNQWITTLHY---AFQDENNLY   77 (332)
T ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHC-----CCCCEEEEEE---EEEECCEEE
T ss_conf             57862173709999999899979999998378924789999999999999858-----9997666999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+.+.+   ..++        .....            .....+...+..+.+   
T Consensus        78 lvmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~~~------------~~~~qi~~aL~ylH~---  120 (332)
T cd05623          78 LVMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYLAEMVIAIDSVHQ---  120 (332)
T ss_pred             EEEEECCCCCHH-----------HHHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999944797389-----------9998606---8899--------99999------------999999999999998---


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf             107774440223464225627-960487316213
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS  212 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~  212 (316)
                          +|+||.|+.|.|||++. +.+. ++||+.|
T Consensus       121 ----~~IiHRDLKPeNILl~~~g~iK-L~DFG~a  149 (332)
T cd05623         121 ----LHYVHRDIKPDNILMDMNGHIR-LADFGSC  149 (332)
T ss_pred             ----CCCEECCCCCCCCCCCCCCCEE-EECCHHH
T ss_conf             ----7975311257660335899889-8300032


No 227
>cd05038 PTKc_Jak_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=97.25  E-value=0.015  Score=36.11  Aligned_cols=143  Identities=16%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             EEEEEECCCCCEEEEEEEEEC-----CCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             053100466812001799943-----995-8999821669988---9999999999985326775551001026778752
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTS-----KGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~-----~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +.-++.|..|.--+.|+.+.+     .|+ ..+|+.+......   ++..|+.+|..|+.     |.+++-. |-.....
T Consensus         6 ~~~~~~IG~G~fG~Vy~~~~~~~~~~~~~~VAvK~i~~~~~~~~~~~f~~Ei~~l~~l~H-----pnIv~l~-g~~~~~~   79 (279)
T cd05038           6 LKLIKQLGEGHFGTVYLGTYDPPDDNTGEIVAVKKLNTSGVEAHRQDFEREIEIMRTLDH-----ENIVKYK-GVSEEPG   79 (279)
T ss_pred             EEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-EEEECCC
T ss_conf             799789703748099999995785877839999998845597899999999999986799-----8976188-9996289


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      .+..+.+++|++|.++..           .   |+.....+        .   +...+         .+...+...+.++
T Consensus        80 ~~~~~iV~Ey~~~GsL~~-----------~---l~~~~~~~--------~---~~~~~---------~i~~qia~gL~yL  125 (279)
T cd05038          80 GRSLSLIMEYLPSGSLRD-----------Y---LRRHRDQL--------N---LKRLL---------LFALQIAKGMDYL  125 (279)
T ss_pred             CCEEEEEEEECCCCCHHH-----------H---HHHCCCCC--------C---HHHHH---------HHHHHHHHHHHHH
T ss_conf             987999999179985899-----------9---86158999--------9---99999---------9999999999988


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             876521077744402234642256279604873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+       +++||+|+.+.|||++.+...-|.||+.|.
T Consensus       126 H~-------~~iiHrDlK~~NILl~~~~~~Ki~DFGls~  157 (279)
T cd05038         126 GS-------KRLIHRDLAARNILVDSEDLVKISDFGLAK  157 (279)
T ss_pred             HH-------CCEEECCCCCCCEEECCCCEEEEECCCCCC
T ss_conf             75-------897655256210778899909993474532


No 228
>cd05603 STKc_SGK2 STKc_SGK2: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=97.23  E-value=0.0059  Score=38.74  Aligned_cols=135  Identities=18%  Similarity=0.298  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-58999821669--9889---99999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      |..|.--+.|++.-. +| .|.+|+..+..  ...+   +..+.+.|  +  +.+.-|.+++-..   ..+-.+..+.++
T Consensus         3 IG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il--l--~~l~Hp~Iv~l~~---~f~~~~~lyivm   75 (321)
T cd05603           3 IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVL--L--KNLKHPFLVGLHY---SFQTAEKLYFVL   75 (321)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHH--H--HHCCCCCCCCEEE---EEEECCEEEEEE
T ss_conf             62387949999998899989999998378804889999999999999--9--8689989990999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.              ..+.+. ..++        .....            .....+...+..+.+      
T Consensus        76 Ey~~gGdL~--------------~~l~~~-~~~~--------e~~a~------------~~~~qi~~aL~yLH~------  114 (321)
T cd05603          76 DYVNGGELF--------------FHLQRE-RCFL--------EPRAR------------FYAAEVASAIGYLHS------  114 (321)
T ss_pred             ECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------
T ss_conf             687998699--------------999874-9999--------99999------------999999999999998------


Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             774440223464225627-96048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                       +++||.|+.|.|||++. +.+. ++||+.|..
T Consensus       115 -~~IiHRDLKPeNILld~~g~iK-L~DFGlak~  145 (321)
T cd05603         115 -LNIIYRDLKPENILLDSQGHVV-LTDFGLCKE  145 (321)
T ss_pred             -CCCEECCCCCCCCCCCCCCCEE-ECCCHHHHH
T ss_conf             -8944024365540115889888-513254331


No 229
>PTZ00284 protein kinase; Provisional
Probab=97.23  E-value=0.015  Score=36.17  Aligned_cols=32  Identities=25%  Similarity=0.550  Sum_probs=25.5

Q ss_pred             CCEEECCCCCCCEEECCC-----------------CCEEEECCCCCCCCH
Q ss_conf             744402234642256279-----------------604873162135680
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNN-----------------KIMGLIDFYFSCNDF  216 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~-----------------~i~giIDF~~~~~~~  216 (316)
                      .++||.|+.|.|||+...                 +|. ||||+.||...
T Consensus       251 ~~IIHtDLKPENILL~~~~~~~d~~~~~~~~~~~~~IK-lIDFGSAc~~~  299 (467)
T PTZ00284        251 LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVR-ICDLGGCCDER  299 (467)
T ss_pred             CCEEECCCCHHHEEECCCCCCCCCCCCCCCCCCCCCEE-EEECCCCCCCC
T ss_conf             79774238999931256775445322345789876379-94357666677


No 230
>cd06628 STKc_MAPKKK_Byr2_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important
Probab=97.23  E-value=0.005  Score=39.21  Aligned_cols=132  Identities=18%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             CCCEEEEEEEEE-CCCC-EEEEEECCCC-CH----------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             681200179994-3995-8999821669-98----------899999999999853267755510010267787522451
Q gi|254780795|r   32 HGVENSNFVIQT-SKGT-FILTIYEKRM-NE----------KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        32 ~G~~Ntny~v~t-~~~~-yiLri~e~~~-~~----------~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      .|.--+.|+..- ..|+ |.+|..+... ..          +.+..|+.+|..|.     -|.+++-.+   ...-.+..
T Consensus        10 ~G~fg~Vy~~~~~~~g~~vAiK~~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~~~~---~~~~~~~~   81 (267)
T cd06628          10 SGSFGSVYLGMNAHSGELMAVKQVEIPSNSIGVQDRKRKMLDALQREINLLKELH-----HENIVQYLG---SSQDAGHL   81 (267)
T ss_pred             ECCCEEEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCEEE---EEEECCEE
T ss_conf             0748199999988999899999995045550267889999999999999998779-----989992999---99789999


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.++              ...++.. ..++        ....            ......+...++.+.+  
T Consensus        82 ~iv~Ey~~gg~L--------------~~~l~~~-~~l~--------e~~~------------~~~~~qil~gL~yLH~--  124 (267)
T cd06628          82 NIFLEYVPGGSV--------------AALLNNY-GAFE--------ESLV------------RNFVRQILKGLNYLHN--  124 (267)
T ss_pred             EEEEEECCCCCH--------------HHHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             999990396969--------------9999865-9999--------9999------------9999999999999986--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +++||.|+.|.|||++.+...-|+||+.|.
T Consensus       125 -----~~IiHRDlKp~NILl~~~g~vKl~DFGla~  154 (267)
T cd06628         125 -----RGIIHRDIKGANILVDNKGGIKISDFGISK  154 (267)
T ss_pred             -----CCCEEEECCHHHEEECCCCCEEEEECCCCE
T ss_conf             -----890432167777668899989999577874


No 231
>cd06651 STKc_MEKK3 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 
Probab=97.22  E-value=0.0028  Score=40.87  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             HCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----H---HHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             48998605310046681200179994-399-589998216699----8---89999999999985326775551001026
Q gi|254780795|r   18 EYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----E---KDLPVFIELLHYISRNKLPCPIPIPRNDG   88 (316)
Q Consensus        18 ~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G   88 (316)
                      +|.+|++     |..|.--+.|++.. .+| .|.+|+......    .   ..+..|+.+|..|..     |.+++-.+ 
T Consensus         3 ny~~~~~-----lG~G~fg~Vy~~~~~~tg~~~AvK~i~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~-   71 (266)
T cd06651           3 NWRRGKL-----LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQH-----ERIVQYYG-   71 (266)
T ss_pred             CCEECCE-----EECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-
T ss_conf             9883538-----512758199999988999799999995363543669999999999999985899-----99713899-


Q ss_pred             HHHHHH-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             778752-2451557864788707689989999999986436753068754332311245645766752001552278899
Q gi|254780795|r   89 KLYGFL-CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI  167 (316)
Q Consensus        89 ~~~~~~-~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  167 (316)
                       .+..- .+..+.+++|++|..+..           .+   ... ..++        ....            ......+
T Consensus        72 -~~~~~~~~~l~ivmEy~~gg~L~~-----------~l---~~~-~~l~--------e~~~------------~~~~~qi  115 (266)
T cd06651          72 -CLRDRAEKTLTIFMEYMPGGSVKD-----------QL---KAY-GALT--------ESVT------------RKYTRQI  115 (266)
T ss_pred             -EEEECCCCEEEEEEECCCCCCHHH-----------HH---HHC-CCCC--------HHHH------------HHHHHHH
T ss_conf             -999689978999997119598899-----------99---874-9999--------9999------------9999999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             9999988876521077744402234642256279604873162135
Q gi|254780795|r  168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ...+..+.+       +++||.|+.|.|||.+.+...-++||+.|.
T Consensus       116 l~aL~ylH~-------~~IiHRDlKp~NIL~~~~~~vKl~DFG~a~  154 (266)
T cd06651         116 LEGMSYLHS-------NMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             HHHHHHHHH-------CCEEECCCCHHHEEECCCCCEEECCCCCCC
T ss_conf             999999986-------996524387899678789998984157311


No 232
>cd05083 PTKc_Chk Catalytic Domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=97.22  E-value=0.016  Score=35.87  Aligned_cols=139  Identities=11%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             CCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             46681200179994399589998216699889999999999985326775551001026778752245155786478870
Q gi|254780795|r   30 IIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSP  109 (316)
Q Consensus        30 i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~  109 (316)
                      |..|.--+.|.-+....++.+|++........+-.|+.+|..|...     .+++-. |-.   ..+..+.+++|++|.+
T Consensus        14 iG~G~fG~Vy~~~~~g~~vAvK~i~~~~~~~~f~~E~~~l~~l~Hp-----nIv~~~-g~~---~~~~~~iv~Ey~~~Gs   84 (254)
T cd05083          14 IGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHK-----NLVRLL-GVI---LHNGLYIVMELMSKGN   84 (254)
T ss_pred             EECCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCC-----CCCCEE-EEE---EECCEEEEEECCCCCC
T ss_conf             8208981899999999299999978787899999999999867995-----899499-999---8798799998589996


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf             76899899999999864367530687543323112456457667520015522788999999988876521077744402
Q gi|254780795|r  110 LNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHA  189 (316)
Q Consensus       110 ~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHg  189 (316)
                      +..              -|+... ..      ...   +...+         .....+...+..+.+       +++||+
T Consensus        85 L~~--------------~L~~~~-~~------~~~---~~~~~---------~i~~qia~gl~yLH~-------~~iiHr  124 (254)
T cd05083          85 LVN--------------FLRTRG-RA------LVS---VIQLL---------QFSLDVAEGMEYLES-------KKLVHR  124 (254)
T ss_pred             HHH--------------HHHHCC-CC------CCC---HHHHH---------HHHHHHHHHHHHHHC-------CCCCCC
T ss_conf             999--------------998669-98------899---99999---------999999999999825-------995356


Q ss_pred             CCCCCCEEECCCCCEEEECCCCCCCCHH
Q ss_conf             2346422562796048731621356800
Q gi|254780795|r  190 DLFPDNVLFYNNKIMGLIDFYFSCNDFL  217 (316)
Q Consensus       190 Dl~~~NiL~~~~~i~giIDF~~~~~~~~  217 (316)
                      |+.+.|||++.+...-|-||+.+.....
T Consensus       125 DLK~~NILi~~~~~~Ki~DFGls~~~~~  152 (254)
T cd05083         125 DLAARNILVSEDGVAKVSDFGLARVGSM  152 (254)
T ss_pred             CCCCCCEEECCCCCEEEEECCCCEECCC
T ss_conf             0571424388999099941787657777


No 233
>KOG0592 consensus
Probab=97.21  E-value=0.00082  Score=44.31  Aligned_cols=134  Identities=21%  Similarity=0.277  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEEEEE--CCCCEEEEEECCCCC-----HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC--CCEE
Q ss_conf             46681200179994--399589998216699-----88999999999998532677555100102677875224--5155
Q gi|254780795|r   30 IIHGVENSNFVIQT--SKGTFILTIYEKRMN-----EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK--KPAN  100 (316)
Q Consensus        30 i~~G~~Ntny~v~t--~~~~yiLri~e~~~~-----~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~--k~~~  100 (316)
                      |..|.--+.|+-+-  ++.+|.+||.+++.-     ...+--|-+.|..|+.+    |-+++     .+.++++  +.+.
T Consensus        81 lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~h----Pgivk-----Ly~TFQD~~sLYF  151 (604)
T KOG0592          81 LGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGH----PGIVK-----LYFTFQDEESLYF  151 (604)
T ss_pred             ECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCEEE-----EEEEEECCCCEEE
T ss_conf             13553215777332366752228776378777650631413789999986279----97599-----9998614662588


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|.+|              |++|.-|++.+ .|             .....+       -..++|...++.+..    
T Consensus       152 vLe~A~n--------------Gdll~~i~K~G-sf-------------de~caR-------~YAAeIldAleylH~----  192 (604)
T KOG0592         152 VLEYAPN--------------GDLLDLIKKYG-SF-------------DETCAR-------FYAAEILDALEYLHS----  192 (604)
T ss_pred             EEEECCC--------------CCHHHHHHHHC-CC-------------HHHHHH-------HHHHHHHHHHHHHHH----
T ss_conf             8872478--------------71899998746-50-------------278899-------999999999999874----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             0777444022346422562796048731621356
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                         .|+||.|+.|.|||+++|.-+-|-||+-|-.
T Consensus       193 ---~GIIHRDlKPENILLd~dmhikITDFGsAK~  223 (604)
T KOG0592         193 ---NGIIHRDLKPENILLDKDGHIKITDFGSAKI  223 (604)
T ss_pred             ---CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             ---6812046773346675888588751555432


No 234
>cd05624 STKc_MRCK_beta STKc_MRCK_beta: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=97.20  E-value=0.016  Score=35.99  Aligned_cols=137  Identities=16%  Similarity=0.133  Sum_probs=68.1

Q ss_pred             EEECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             1004668120017999439-9-5899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++...+ + .|.+|+..+.  ....+   +..+.++|..     ..+|.+++-..   ..+-.+..+
T Consensus         6 ~k~LG~G~fG~V~~a~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~-----~~h~~Iv~l~~---~f~~~~~~y   77 (331)
T cd05624           6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVN-----GDCQWITTLHY---AFQDENYLY   77 (331)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHH-----CCCCCEEEEEE---EEEECCEEE
T ss_conf             5896327580999999989998999999847891378899999999999985-----79996718999---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|..+.           ..+.+.+   ..++        .....            .....+...+..+.    
T Consensus        78 lvmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~~~------------~~~~qil~aL~ylH----  119 (331)
T cd05624          78 LVMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYIAEMVLAIHSIH----  119 (331)
T ss_pred             EEEECCCCCCHH-----------HHHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHH----
T ss_conf             999615798899-----------9998607---8898--------99999------------99999999999986----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             107774440223464225627960487316213
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                         .+|+||.|+.|.|||++.+...-++||+.|
T Consensus       120 ---~~~IiHRDLKPeNILl~~~g~iKL~DFG~a  149 (331)
T cd05624         120 ---QLHYVHRDIKPDNVLLDMNGHIRLADFGSC  149 (331)
T ss_pred             ---HCCEEECCCCCCCCCCCCCCCEEEECCHHH
T ss_conf             ---366884223665633258997887314132


No 235
>cd05034 PTKc_Src_like Catalytic Domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=97.20  E-value=0.014  Score=36.29  Aligned_cols=139  Identities=14%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             EEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             10046681200179994399-5899982166-998899999999999853267755510010267787522451557864
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .+.|..|.--+.|+....++ +..+|+.... .+.+++-.|+++|..|..     |.+++-. |  +..-.+..+.+++|
T Consensus        11 ~~~iG~G~fG~Vy~~~~~~~~~VAvK~l~~~~~~~~~f~~E~~~l~~l~H-----pnIV~~~-g--~~~~~~~~~iv~Ey   82 (261)
T cd05034          11 ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLEEAQIMKKLRH-----DKLVQLY-A--VCSEEEPIYIVTEY   82 (261)
T ss_pred             EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEEEEC
T ss_conf             25984288838999999999999999987478999999999999986899-----7985599-9--99889989999975


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..           .|   +. ..+      ....   +....         .+...+...+..+.+       +
T Consensus        83 ~~~G~L~~-----------~l---~~-~~~------~~l~---~~~~~---------~i~~qia~gl~yLH~-------~  122 (261)
T cd05034          83 MSKGSLLD-----------FL---KS-GEG------KKLR---LPQLV---------DMAAQIAEGMAYLES-------R  122 (261)
T ss_pred             CCCCCHHH-----------HH---HC-CCC------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------C
T ss_conf             89988899-----------97---21-888------8899---99999---------999999999999986-------9


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++||+|+.+.|||++++...-|.||+.|.
T Consensus       123 ~iiHrDlKp~NILl~~~~~~Kl~DFGls~  151 (261)
T cd05034         123 NYIHRDLAARNVLVGENLVCKVADFGLAR  151 (261)
T ss_pred             CCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             95754327275898899979997278755


No 236
>cd07858 STKc_TEY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the acti
Probab=97.19  E-value=0.005  Score=39.19  Aligned_cols=142  Identities=14%  Similarity=0.211  Sum_probs=67.7

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCC
Q ss_conf             5310046681200179994-399-5899982166-998---8999999999998532677-5551001026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|.+.- ..| .|.+|...+. .+.   ...-.|+.+|..|...++- +-..+.......    .+.
T Consensus         8 ~i~k~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~----~~~   83 (337)
T cd07858           8 VPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREA----FND   83 (337)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC----CCE
T ss_conf             9817972273859999998899989999998802228788999999999998657999605988870366455----544


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.++++++|.         +.++   +    +....+        .....            ......+...+..+.+ 
T Consensus        84 ~yiv~e~~~~~---------L~~~---i----~~~~~l--------~e~~~------------~~i~~Qil~aL~yLH~-  126 (337)
T cd07858          84 VYIVYELMDTD---------LHQI---I----RSSQTL--------SDDHC------------QYFLYQLLRGLKYIHS-  126 (337)
T ss_pred             EEEEEECCCCC---------HHHH---H----HCCCCC--------CHHHH------------HHHHHHHHHHHHHHHH-
T ss_conf             89999626974---------7999---8----707999--------99999------------9999999999999977-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             521077744402234642256279604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                            +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       127 ------~~IiHRDlKPeNILl~~~~~iKL~DFGlAk  156 (337)
T cd07858         127 ------ANVLHRDLKPSNLLLNANCDLKICDFGLAR  156 (337)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             ------895003585698698799988963126663


No 237
>COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]
Probab=97.18  E-value=0.0015  Score=42.53  Aligned_cols=199  Identities=15%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHCCCC---EEEEECCCCC-C-----CCC----
Q ss_conf             589998216699889999999999985326775551001026778-7522451---5578647887-0-----768----
Q gi|254780795|r   47 TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY-GFLCKKP---ANIFSFIKGS-P-----LNH----  112 (316)
Q Consensus        47 ~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~-~~~~~k~---~~L~~~i~G~-~-----~~~----  112 (316)
                      +-|+|+|++.  ...++-.+++..+|...|.|--.|+..   +.- ...+|.+   ++++.|++-. .     ..+    
T Consensus       108 r~i~k~~rrv--~~g~~P~VE~~~~LtR~g~p~~apLlg---e~~ra~~dG~~ytL~~~q~y~~n~~d~w~~Al~~~rr~  182 (438)
T COG3281         108 RAILKVFRRV--SSGINPDVELNRVLTRAGYPNIAPLLG---EFGRAGADGEAYTLVMLQEYVPNAADGWAWALDSLRRL  182 (438)
T ss_pred             HHHHHHHHHH--HCCCCCCHHHHHHHHHCCCCCCHHHHH---HHHCCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHH
T ss_conf             4899999998--568999646778887514875043300---43036577642001211000476045899999999998


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHCCC------CCCCCCCCCCHHHHHHHH----HHHHHCCCH--HHHHHH
Q ss_conf             -------------9989999999986436753068------754332311245645766----752001552--278899
Q gi|254780795|r  113 -------------ISDIHCEEIGSMLASMHQKTKN------FHLYRKNTLSPLNLKFLW----AKCFDKVDE--DLKKEI  167 (316)
Q Consensus       113 -------------~~~~~~~~lG~~La~lH~~~~~------f~~~r~~~~~~~~~~~~~----~~~~~~~~~--~~~~~l  167 (316)
                                   .-......+|..+|.+|.++.+      |+. ....-....|...+    ....+.+..  ....++
T Consensus       183 ~sea~~~~~e~~a~~~~~a~alG~av~~vHsaLA~~sddpafg~-e~~ea~v~~w~~Rla~rls~~~d~l~~p~~ea~~l  261 (438)
T COG3281         183 FSEADLYAHESGADFAGEAGALGEAVAEVHSALASCSDDPAFGE-ETDEATVEAWADRLAERLSEAEDLLRGPAAEAPEL  261 (438)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             86420111100331477898999999999999707766766787-65301499999999999998886531658787999


Q ss_pred             HHHHHHH----HHHHHHCCC--CCEEECCCCCCCEEECCCCCEEEECCCCC---------CCCHHHCCHHHHHHHHHH--
Q ss_conf             9999988----876521077--74440223464225627960487316213---------568000198999986431--
Q gi|254780795|r  168 DHEFCFL----KESWPKNLP--TGIIHADLFPDNVLFYNNKIMGLIDFYFS---------CNDFLMYDLSICINAWCF--  230 (316)
Q Consensus       168 ~~~l~~~----~~~~~~~Lp--~g~IHgDl~~~NiL~~~~~i~giIDF~~~---------~~~~~i~DLAi~i~~~c~--  230 (316)
                      .+....+    .+.+...+-  -.=+|||+|.+-||...++.. +|||+--         ..+.++-|+|=.+-++-.  
T Consensus       262 ~~~~~Al~q~~q~la~~algg~l~RvHGDLHLgQVLvt~g~~~-liDFEGEPsRpl~err~~~sPlrDvAgllRS~DYAa  340 (438)
T COG3281         262 LEYAPALLQLFQKLAREALGGVLQRVHGDLHLGQVLVTPGRAL-LIDFEGEPSRPLDERRAPDSPLRDVAGLLRSFDYAA  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHEEEECCCEE-EEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9866999999999987654357988705400040463078379-984478988984450178993578999998868888


Q ss_pred             ----C----CCCC-----------CCHHHHHHHHHHHHHCC
Q ss_conf             ----1----6888-----------78788999998876418
Q gi|254780795|r  231 ----D----ENNT-----------YNPSRGFSILNGYNKVR  252 (316)
Q Consensus       231 ----~----~~~~-----------~d~~~~~~~l~gY~~vr  252 (316)
                          .    ..++           |-.....+|++||-...
T Consensus       341 ~~~~q~~~~~~e~a~e~~~~~~~~w~~as~~~fl~gY~aa~  381 (438)
T COG3281         341 YGPLQALGRTDEAADEQRRGEARRWVEASRAAFLDGYAAAS  381 (438)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77652323320356899999999999999999998878875


No 238
>cd05586 STKc_Sck1_like STKc_Sck1_like: Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes.
Probab=97.16  E-value=0.01  Score=37.20  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             CCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             6812001799943-99-58999821669--988999---99999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|++... .| .|.+|+..+..  ...++.   .+.++|..+...  ..|.++.-..   ...-.+..+.+++|
T Consensus         3 ~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~--~~p~Iv~l~~---~f~~~~~lylVmEy   77 (330)
T cd05586           3 KGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLD--ESPFIVGLKF---SFQTDSDLYLVTDY   77 (330)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEE---EEEECCEEEEEEEC
T ss_conf             682649999998899989999998478800658899999999999998515--9983858999---99989999999957


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+.              ..+.+. ..++        .....            .....+...+..+.+       +
T Consensus        78 ~~gGdL~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~-------~  115 (330)
T cd05586          78 MSGGELF--------------WHLQKE-GRFS--------EDRAK------------FYIAELVLALEHLHK-------Y  115 (330)
T ss_pred             CCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------C
T ss_conf             8998889--------------999875-9999--------99999------------999999999999998-------8


Q ss_pred             CEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             44402234642256279-604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                      |+||.|+.|.|||++.+ .+ -++||+.|.
T Consensus       116 gIiHRDLKPeNILl~~~g~i-KL~DFGlak  144 (330)
T cd05586         116 DIVYRDLKPENILLDATGHI-ALCDFGLSK  144 (330)
T ss_pred             CCEECCCCCCCCCCCCCCCE-EECCCCCCC
T ss_conf             93340327654111578974-322334001


No 239
>cd05606 STKc_beta_ARK STKc_beta_ARK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely e
Probab=97.14  E-value=0.012  Score=36.78  Aligned_cols=134  Identities=18%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCCEEEEEEEEE-CCC-CEEEEEECCCC-CHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             681200179994-399-58999821669-9889----9999999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQT-SKG-TFILTIYEKRM-NEKD----LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t-~~~-~yiLri~e~~~-~~~~----l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|++.. ++| .|.+|+..+.. ....    ...+..++..++..  .+|.++.-.+   ..+-.++.+.+++|
T Consensus         4 ~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~e~~~~~~~~~~--~~p~Iv~l~~---~~~~~~~lylvmE~   78 (278)
T cd05606           4 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG--DCPFIVCMTY---AFHTPDKLCFILDL   78 (278)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEE---EEEECCEEEEEEEC
T ss_conf             082719999998899989999998488830456689999999999998518--9997879999---99989999999984


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|..+..           .+   .+  .+       .......            ......+...+..+.+       +
T Consensus        79 ~~gG~L~~-----------~l---~~--~~-------~~~e~~~------------~~~~~qil~aL~ylH~-------~  116 (278)
T cd05606          79 MNGGDLHY-----------HL---SQ--HG-------VFSEAEM------------RFYAAEIILGLEHMHN-------R  116 (278)
T ss_pred             CCCCCHHH-----------HH---HH--CC-------CCCHHHH------------HHHHHHHHHHHHHHHH-------C
T ss_conf             59986999-----------99---87--59-------9999999------------9999999999999987-------8


Q ss_pred             CEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             4440223464225627-9604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      |+||.|+.|.|||+++ +.+. ++||+.|+
T Consensus       117 gIiHRDlKPeNILl~~~g~vK-l~DFGla~  145 (278)
T cd05606         117 FVVYRDLKPANILLDEHGHVR-ISDLGLAC  145 (278)
T ss_pred             CCEECCCCCCCCCCCCCCCEE-EEECCEEE
T ss_conf             988723572002434789779-97557216


No 240
>cd07834 STKc_MAPK The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylat
Probab=97.14  E-value=0.0075  Score=38.07  Aligned_cols=137  Identities=16%  Similarity=0.141  Sum_probs=67.0

Q ss_pred             EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHCCCCE
Q ss_conf             0046681200179994-399-5899982166-9988---99999999999853267755510010267787--5224515
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG--FLCKKPA   99 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~--~~~~k~~   99 (316)
                      +.|..|.--+.|+..- .+| .+.+|+..+. .+..   .+..|+.+|..|...     .+++-.+--...  ...+..+
T Consensus         6 ~~lG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~Hp-----nIv~l~~~~~~~~~~~~~~~y   80 (330)
T cd07834           6 KPIGSGAYGVVCSAVDTRTGKKVAIKKISNVFDDLIDAKRILREIKILRHLKHE-----NIIGLLDIFRPPSPEDFNDVY   80 (330)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEEEEEECCCCCCCCEEE
T ss_conf             794226384999999889998999999883014989999999999999976999-----986188999417877787599


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.      .   .++   +   +. ...+        ......            .....+...+..+.+   
T Consensus        81 iVmE~~~~d------L---~~~---i---~~-~~~l--------~e~~~~------------~~~~qil~aL~ylH~---  121 (330)
T cd07834          81 IVTELMETD------L---HKV---I---KS-PQPL--------SEDHIQ------------YFLYQILRGLKYLHS---  121 (330)
T ss_pred             EEEECCCCC------H---HHH---H---HC-CCCC--------CHHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             999799988------9---999---9---71-8999--------999999------------999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             107774440223464225627960487316213
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                          +|+||.|+.|.|||++.+...-++||+.|
T Consensus       122 ----~~IiHRDiKPeNILl~~~~~vKL~DFGla  150 (330)
T cd07834         122 ----AGVIHRDLKPSNLLVNSNCDLKICDFGLA  150 (330)
T ss_pred             ----CCCCCCCCCHHHEEECCCCCEEECCCCCC
T ss_conf             ----88636767789931566777333113310


No 241
>cd00192 PTKc Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=97.11  E-value=0.02  Score=35.31  Aligned_cols=142  Identities=16%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEEEE--ECC--C-CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             4668120017999--439--9-58999821669988---99999999999853267755510010267787522451557
Q gi|254780795|r   30 IIHGVENSNFVIQ--TSK--G-TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        30 i~~G~~Ntny~v~--t~~--~-~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      |..|.--+.|+-.  .+.  + ...+|++.......   ++..|+.+|..|..     |.+++-. |  +..-.+..+.+
T Consensus         3 iG~G~fg~V~~a~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g--~~~~~~~~~iv   74 (261)
T cd00192           3 LGEGAFGEVYKGELKGKGGKKTPVAVKTLKEDASDSEREDFLKEAKIMKKLGH-----PNIVRLL-G--VCTEEEPLYLV   74 (261)
T ss_pred             CCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEE
T ss_conf             87488828999999779972599999998932799999999999999986899-----8884287-8--99679988999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..           .   |+...... .........   ....         .....+...+..+.+     
T Consensus        75 ~Ey~~~GsL~~-----------~---l~~~~~~~-~~~~~~l~~---~~~~---------~~~~qia~gl~yLH~-----  122 (261)
T cd00192          75 LEYMEGGDLLD-----------F---LRKSRPVF-SPESSTLSL---KDLL---------SFAYQIASGMEYLAS-----  122 (261)
T ss_pred             EEECCCCCHHH-----------H---HHHCCCCC-CCCCCCCCH---HHHH---------HHHHHHHHHHHHHHH-----
T ss_conf             98069995999-----------9---98635554-444688999---9999---------999999999999976-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        +++||+|+.|.|||++.+...-|.||+.|.
T Consensus       123 --~~iiHrDiKp~NILl~~~~~~Kl~DFGls~  152 (261)
T cd00192         123 --KNFVHRDLAARNVLVGEDLVVKIADFGLSR  152 (261)
T ss_pred             --CCCCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             --995578776787898799968992165765


No 242
>cd05615 STKc_cPKC_alpha STKc_cPKC_alpha: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with ce
Probab=97.10  E-value=0.0061  Score=38.67  Aligned_cols=136  Identities=18%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             00466812001799943-99-5899982166--9988999---9999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +-|..|.--+.|++... +| .|.+|+..+.  ....++.   .+.++|..+..+    |-+++-.+   ..+-.++.+.
T Consensus         6 ~~LG~G~fG~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~----p~Iv~l~~---~f~~~~~~yl   78 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP----PFLTQLHS---CFQTVDRLYF   78 (323)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECCEEEE
T ss_conf             7953288809999999999989999998578853857899999999999970599----95848999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.           ..+.+.    ..++        .....            .....+...+..+.+    
T Consensus        79 vmEy~~gGdL~-----------~~l~~~----~~~~--------e~~~~------------~~~~qi~~aL~yLH~----  119 (323)
T cd05615          79 VMEYVNGGDLM-----------YHIQQV----GKFK--------EPQAV------------FYAAEISVGLFFLHR----  119 (323)
T ss_pred             EEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             99768998278-----------999871----8999--------99999------------999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             07774440223464225627-9604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                         +|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       120 ---~~IiHRDLKPeNILld~~g~iK-L~DFGlak  149 (323)
T cd05615         120 ---RGIIYRDLKLDNVMLDSEGHIK-IADFGMCK  149 (323)
T ss_pred             ---CCCEECCCCCCCEEECCCCCEE-EEEHHHHH
T ss_conf             ---8946466774311387899889-85446645


No 243
>cd05604 STKc_SGK3 STKc_SGK3: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling.
Probab=97.09  E-value=0.011  Score=36.90  Aligned_cols=134  Identities=18%  Similarity=0.318  Sum_probs=67.5

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-58999821669--9889---999999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... +| .|.+|+..+..  +..+   +..+...+  +  +.+.-|.+++-..   ..+-.++.+.+++
T Consensus         4 G~G~fG~V~la~~k~tg~~~AiKvi~k~~~~~~~~~~~~~~E~~il--~--~~~~hp~Iv~l~~---~f~~~~~lylVmE   76 (325)
T cd05604           4 GKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVL--L--KNVKHPFLVGLHY---SFQTTEKLYFVLD   76 (325)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHH--H--HHCCCCCCCEEEE---EEEECCEEEEEEE
T ss_conf             1288949999998899989999998167835989999999999999--9--8789998893999---9998999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+.+. ..++        .....            .....+...+..+.+       
T Consensus        77 y~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~y~~qi~~aL~yLH~-------  114 (325)
T cd05604          77 FVNGGELF--------------FHLQRE-RSFP--------EPRAR------------FYAAEIASALGYLHS-------  114 (325)
T ss_pred             CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             88898899--------------998745-8999--------99999------------999999999999987-------


Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             74440223464225627-96048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      .++||.|+.|.|||++. +.+. +.||+.|..
T Consensus       115 ~~IiHRDLKPeNILl~~~g~ik-L~DFGlak~  145 (325)
T cd05604         115 INIVYRDLKPENILLDSQGHVV-LTDFGLCKE  145 (325)
T ss_pred             CCCEECCCCCCCCCCCCCCCEE-EEECCHHHC
T ss_conf             8914302275442426899789-743231010


No 244
>cd05607 STKc_GRK7 STKc_GRK7: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation
Probab=97.09  E-value=0.0092  Score=37.49  Aligned_cols=132  Identities=17%  Similarity=0.231  Sum_probs=65.9

Q ss_pred             CCEEEEEEEEEC-CC-CEEEEEECCC-CCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             812001799943-99-5899982166-998----8999999999998532677555100102677875224515578647
Q gi|254780795|r   33 GVENSNFVIQTS-KG-TFILTIYEKR-MNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI  105 (316)
Q Consensus        33 G~~Ntny~v~t~-~~-~yiLri~e~~-~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i  105 (316)
                      |.--+.|.+... +| .|.+|+..+. ...    .....+.++|..+..     |.++.-..   ..+-++..+.+++|+
T Consensus         4 G~fg~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----p~iv~l~~---~~~~~~~~~lvmE~~   75 (277)
T cd05607           4 GGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNS-----PFIVNLAY---AFESKTHLCLVMSLM   75 (277)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEEEC
T ss_conf             8456999999989998999999817891445789999999999986799-----98991878---998799899999805


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88707689989999999986436753068754332311245645766752001552278899999998887652107774
Q gi|254780795|r  106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG  185 (316)
Q Consensus       106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g  185 (316)
                      +|..+..    .+...|         ..+++        .....            .....+...+..+.+       .|
T Consensus        76 ~ggdL~~----~i~~~~---------~~~~~--------~~~~~------------~~~~qi~~al~ylH~-------~~  115 (277)
T cd05607          76 NGGDLKY----HIYNVG---------ERGLE--------MERVI------------HYSAQITCGILHLHS-------MD  115 (277)
T ss_pred             CCCCHHH----HHHHCC---------CCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------CC
T ss_conf             8980899----998537---------78999--------99999------------999999999999986-------89


Q ss_pred             EEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             440223464225627-9604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      +||.|+.|.|||+++ +++ -+.||+.|.
T Consensus       116 IiHRDlKPeNILl~~~g~~-Kl~DFGla~  143 (277)
T cd05607         116 IVYRDMKPENVLLDDQGNC-RLSDLGLAV  143 (277)
T ss_pred             CCCCCCCHHHCCCCCCCCE-EEEECCEEE
T ss_conf             5525477787130578977-984557026


No 245
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=97.08  E-value=0.015  Score=36.08  Aligned_cols=136  Identities=15%  Similarity=0.205  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEEEEECC-----C-CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             4668120017999439-----9-58999821669988---9999999999985326775551001026778752245155
Q gi|254780795|r   30 IIHGVENSNFVIQTSK-----G-TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        30 i~~G~~Ntny~v~t~~-----~-~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      |..|.--+.|+-....     + ...+|+........   ++..|+++|..|..     |.+++-.+   ....++..+.
T Consensus         7 lG~G~fg~Vy~a~~~~~~~~~~~~VAvK~i~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~g---~~~~~~~~~l   78 (258)
T smart00219        7 LGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDH-----PNIVKLLG---VCTEEEPLMI   78 (258)
T ss_pred             EECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE
T ss_conf             722888599999995898855779999998855798999999999999986799-----98853868---9977998899


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++..           .+   .. .++      ...   .+....         .....+...+..+.+    
T Consensus        79 vmE~~~~G~L~~-----------~l---~~-~~~------~~l---~~~~~~---------~i~~qi~~gl~yLH~----  121 (258)
T smart00219       79 VMEYMEGGDLLD-----------YL---RK-NRP------KEL---SLSDLL---------SFALQIARGMEYLES----  121 (258)
T ss_pred             EEECCCCCCHHH-----------HH---HH-CCC------CCC---CHHHHH---------HHHHHHHHHHHHHHH----
T ss_conf             996688991999-----------99---75-589------999---999999---------999999999999986----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +++||+|+.|.|||++++...-|.||+-|.
T Consensus       122 ---~~ivHrDiKp~NILl~~~~~~Kl~DFGla~  151 (258)
T smart00219      122 ---KNFIHRDLAARNCLVGENLVVKISDFGLSR  151 (258)
T ss_pred             ---CCEECCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             ---998506175883788899959999778866


No 246
>cd06652 STKc_MEKK2 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays r
Probab=97.05  E-value=0.0064  Score=38.52  Aligned_cols=143  Identities=17%  Similarity=0.180  Sum_probs=70.3

Q ss_pred             HCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC----CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             48998605310046681200179994-399-5899982166----9988---9999999999985326775551001026
Q gi|254780795|r   18 EYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR----MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDG   88 (316)
Q Consensus        18 ~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~----~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G   88 (316)
                      +|.+++..     ..|.--+.|++.. +.| .+.+|+....    ....   .+..|+.+|..|..     |.+++-. |
T Consensus         3 ~Y~l~~~l-----G~G~fg~Vy~a~~~~tg~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~-~   71 (265)
T cd06652           3 NWRLGKLL-----GQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLH-----ERIVQYY-G   71 (265)
T ss_pred             CCEEEEEE-----ECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E
T ss_conf             87883698-----31888399999988999799999993163555679999999999999984799-----8873188-9


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             77875224515578647887076899899999999864367530687543323112456457667520015522788999
Q gi|254780795|r   89 KLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEID  168 (316)
Q Consensus        89 ~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (316)
                      -.....++..+.+++|++|.++..           .+   .. ...++        ....            ......+.
T Consensus        72 ~~~~~~~~~~~ivmEy~~gg~L~~-----------~l---~~-~~~l~--------e~~~------------~~~~~qi~  116 (265)
T cd06652          72 CLRDPMERTLSIFMEHMPGGSIKD-----------QL---KS-YGALT--------ENVT------------RKYTRQIL  116 (265)
T ss_pred             EEECCCCCEEEEEEEECCCCCHHH-----------HH---HH-CCCCC--------HHHH------------HHHHHHHH
T ss_conf             998089988999997019298899-----------99---87-49999--------9999------------99999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             999988876521077744402234642256279604873162135
Q gi|254780795|r  169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..+..+.+       +++||.|+.|.|||++.+...-+.||+.|.
T Consensus       117 ~al~ylH~-------~~IiHRDiKp~NIL~~~~g~vKl~DFGla~  154 (265)
T cd06652         117 EGVSYLHS-------NMIVHRDIKGANILRDSVGNVKLGDFGASK  154 (265)
T ss_pred             HHHHHHHH-------CCEEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             99999997-------998535487898648899999996277541


No 247
>cd05628 STKc_NDR1 STKc_NDR1: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient o
Probab=97.04  E-value=0.029  Score=34.28  Aligned_cols=135  Identities=18%  Similarity=0.203  Sum_probs=69.2

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166--99889---99999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++-|..|.--+.|++.-. .| .|.+|+..+.  .....   +..+.++|.++.     .|.+++-..   ..+-.+..+
T Consensus         6 ik~iG~G~fG~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----~~~iv~l~~---~f~~~~~ly   77 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEAD-----SLWVVKMFY---SFQDKLNLY   77 (363)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEE
T ss_conf             358212868499999989999899999981678158999999999999998689-----997765989---999899899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+|+|++|..+.           ..+   .+. ..+        ......            .....+...+..+.    
T Consensus        78 lvmEy~~GGdL~-----------~~l---~~~-~~l--------~e~~~~------------~~~~qi~~aL~~lH----  118 (363)
T cd05628          78 LIMEFLPGGDMM-----------TLL---MKK-DTL--------TEEETQ------------FYIAETVLAIDSIH----  118 (363)
T ss_pred             EEEECCCCCCHH-----------HHH---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH----
T ss_conf             999555897289-----------988---726-998--------999999------------99999999999997----


Q ss_pred             HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf             107774440223464225627-960487316213
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS  212 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~  212 (316)
                         ..|+||.|+.|.|||++. +.+ -+.||+.|
T Consensus       119 ---~~gIiHRDLKPeNILld~~g~i-KL~DFGla  148 (363)
T cd05628         119 ---QLGFIHRDIKPDNLLLDSKGHV-KLSDFGLC  148 (363)
T ss_pred             ---HCCEEECCCCCCEEEECCCCCE-EECCCCCC
T ss_conf             ---4878951256661788899988-97647765


No 248
>cd07842 STKc_CDK8_like The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with 
Probab=97.04  E-value=0.0092  Score=37.48  Aligned_cols=141  Identities=15%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             EECCCCCEEEEEEEE---ECCC-CEEEEEECCCCC-HH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             004668120017999---4399-589998216699-88----99999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQ---TSKG-TFILTIYEKRMN-EK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~---t~~~-~yiLri~e~~~~-~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +.|..|.--+.|++.   +..+ .|.+|+...... ..    ..-.|+.+|..|..     |.+++..+ .....-.+..
T Consensus         6 ~~lG~G~fg~V~~~~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~l~~-~~~~~~~~~~   79 (315)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH-----ENVVSLVE-VFLEHADKSV   79 (315)
T ss_pred             EEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEE
T ss_conf             49832568198999984689994999999842101004668999999999986699-----88641778-9970898789


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.-            +..+ +.|........      ....    .        ......+...+..+.+  
T Consensus        80 ~lv~E~~~~~l------------~~~i-~~~~~~~~~~~------~~~~----i--------~~i~~Qll~aL~yLH~--  126 (315)
T cd07842          80 YLLFDYAEHDL------------WQII-KFHRQAKRVSI------PPSM----V--------KSLLWQILNGVHYLHS--  126 (315)
T ss_pred             EEEEECCCCCH------------HHHH-HHHHHHCCCCC------CHHH----H--------HHHHHHHHHHHHHHHH--
T ss_conf             99991379987------------9999-98666227889------9999----9--------9999999999999998--


Q ss_pred             HHCCCCCEEECCCCCCCEEECC-----CCCEEEECCCCCC
Q ss_conf             2107774440223464225627-----9604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYN-----NKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~-----~~i~giIDF~~~~  213 (316)
                           .++||.|+.|.|||+.+     +.+. |+||+.|.
T Consensus       127 -----~~IiHrDlKPeNILl~~~~~~~~~iK-l~DFG~a~  160 (315)
T cd07842         127 -----NWVLHRDLKPANILVMGEGPERGVVK-IGDLGLAR  160 (315)
T ss_pred             -----CCEEECCCCCCCEEEECCCCCCCCEE-ECCCCEEE
T ss_conf             -----89163337610079832567778788-66873036


No 249
>cd05619 STKc_nPKC_theta STKc_nPKC_theta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other
Probab=97.03  E-value=0.01  Score=37.23  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-58999821669--988999---999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      |..|.--+.|++... .| .|.+|+..+..  ...++.   .+..+|..    .+.-|.+++-..   ..+-++..+.++
T Consensus         3 IG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~----~~~Hp~Iv~l~~---~f~~~~~lylvm   75 (316)
T cd05619           3 LGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSL----AWEHPFLTHLYC---TFQTKENLFFVM   75 (316)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHH----HCCCCCCCEEEE---EEEECCEEEEEE
T ss_conf             4328895999999999998999999817873371589999999999997----379998885999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+..           .+.+.+    .++        .....            .....+...+..+.+      
T Consensus        76 Ey~~gGdL~~-----------~l~~~~----~~~--------~~~a~------------~~~~qi~~aL~ylH~------  114 (316)
T cd05619          76 EYLNGGDLMF-----------HIQSCH----KFD--------LPRAT------------FYAAEIICGLQFLHS------  114 (316)
T ss_pred             ECCCCCCHHH-----------HHHHCC----CCC--------HHHHH------------HHHHHHHHHHHHHHH------
T ss_conf             7569987888-----------786438----999--------99999------------999999999999987------


Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                       +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       115 -~~IiHRDlKpeNILl~~~g~iKL~DFGlak  144 (316)
T cd05619         115 -KGIVYRDLKLDNILLDTDGHIKIADFGMCK  144 (316)
T ss_pred             -CCEEECCCCCCCCCCCCCCCEEEECCCHHH
T ss_conf             -894744347656552579977873112566


No 250
>cd07837 STKc_CdkB_plant The catalytic domain of the Serine/Threonine Kinase, Plant Cyclin-Dependent protein Kinase CdkB subfamily. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrat
Probab=97.02  E-value=0.0079  Score=37.91  Aligned_cols=144  Identities=15%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC--C
Q ss_conf             10046681200179994-399-5899982166998----89999999999985326775551001026778752245--1
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK--P   98 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k--~   98 (316)
                      ++.|..|.--+.|.+.. .+| .+.+|......+.    ...-.|+.+|+.|+.+.. +...+..   .......++  .
T Consensus         6 ~~~lG~G~fg~V~~a~~~~t~~~vAiK~~~~~~~~~~~~~~~~rEi~il~~l~~~~~-i~~~~~~---~~~~~~~~~~~~   81 (295)
T cd07837           6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIY-IVRLLDV---EHVEEKNGKPSL   81 (295)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEE---EEECCCCCCEEE
T ss_conf             269832618599999999999899999970352023448999999999986147997-8988645---751267895589


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.-      .   +.   +- .+..  . .   .........            ......+...+..+.+  
T Consensus        82 ~iv~E~~~~~l------~---~~---~~-~~~~--~-~---~~~l~e~~~------------~~~~~ql~~al~~lH~--  128 (295)
T cd07837          82 YLVFEYLDSDL------K---KF---MD-SNGR--G-P---GRPLPAKTI------------KSFMYQLLKGVAHCHK--  128 (295)
T ss_pred             EEEEECCCCCH------H---HH---HH-HHCC--C-C---CCCCCHHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             99995489867------9---99---99-8354--5-7---888899999------------9999999999999998--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCC--CCEEEECCCCCC
Q ss_conf             21077744402234642256279--604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNN--KIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~--~i~giIDF~~~~  213 (316)
                           .|+||.|+.|+|||++++  .+. |+||+.|.
T Consensus       129 -----~~IiHRDlKPeNILi~~~~~~iK-l~DFGls~  159 (295)
T cd07837         129 -----HGVMHRDLKPQNLLVDKQKGLLK-IADLGLGR  159 (295)
T ss_pred             -----CCCEECCCCHHHEEECCCCCEEE-EECCCCHH
T ss_conf             -----88667427766624627898799-93257233


No 251
>cd05073 PTKc_Hck Catalytic Domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=97.02  E-value=0.026  Score=34.53  Aligned_cols=138  Identities=14%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             EEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             10046681200179994399-5899982166-998899999999999853267755510010267787522451557864
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .+.|..|.--+.|+..-+++ +..+|..... .+.+.+-.|+.+|..|+.     |.+++- .|-   ..++..+.+++|
T Consensus        11 ~~~iG~G~fG~Vy~~~~~~~~~VAvK~l~~~~~~~~~f~~E~~~l~~l~H-----pniv~~-~~~---~~~~~~~lv~Ey   81 (260)
T cd05073          11 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQH-----DKLVKL-HAV---VTKEPIYIITEF   81 (260)
T ss_pred             EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEE-EEE---EECCCEEEEEEE
T ss_conf             23994178869999998999999999985676789999999999986899-----888649-999---946953999991


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++.           ..|   +.. .+      ....   +....         .....+...+..+.+       +
T Consensus        82 ~~~GsL~-----------~~l---~~~-~~------~~~~---~~~~~---------~~~~qia~gl~yLH~-------~  121 (260)
T cd05073          82 MAKGSLL-----------DFL---KSD-EG------SKQP---LPKLI---------DFSAQIAEGMAFIEQ-------R  121 (260)
T ss_pred             CCCCCHH-----------HHH---HHC-CC------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------C
T ss_conf             6998999-----------998---636-67------7789---99999---------999999999999986-------9


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++||+|+.+.|||++.+...-|.||+.+.
T Consensus       122 ~iiHrDlKp~NiLl~~~~~~Kl~DFGls~  150 (260)
T cd05073         122 NYIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             CCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             92667677200788699878998568865


No 252
>cd05631 STKc_GRK4 STKc_GRK4: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as 
Probab=97.02  E-value=0.019  Score=35.52  Aligned_cols=137  Identities=15%  Similarity=0.146  Sum_probs=70.9

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166-9988----999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++-|..|.--+.|++... +| .|.+|+.++. ....    ..-.++++|..+....+     +.-.   ...+..+..+
T Consensus         5 ~k~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~i-----v~l~---~~~~~~~~~~   76 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFV-----VSLA---YAYETKDALC   76 (285)
T ss_pred             EEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEE
T ss_conf             5895038182999999989997999999837881025789999999999987699888-----8599---9999799999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             578647887076899899999999864367530-6875433231124564576675200155227889999999888765
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      .++++++|..+.    ..+          +... .+++        .....            .....+...++.+.+  
T Consensus        77 lv~e~~~gg~L~----~~i----------~~~~~~~~~--------e~~~~------------~~~~qi~~al~ylH~--  120 (285)
T cd05631          77 LVLTIMNGGDLK----FHI----------YNMGNPGFD--------EQRAI------------FYAAELCCGLEDLQR--  120 (285)
T ss_pred             EEEEECCCCCHH----HHH----------HHCCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH--
T ss_conf             999965798589----999----------863899999--------99999------------999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             2107774440223464225627-9604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                           +++||.|+.|.|||+++ +.+ -|+||+.|.
T Consensus       121 -----~~IiHRDlKPeNILl~~~~~i-Kl~DFGla~  150 (285)
T cd05631         121 -----ERIVYRDLKPENILLDDRGHI-RISDLGLAV  150 (285)
T ss_pred             -----CCCCCCCCCCCCCCCCCCCCE-EEEECCCEE
T ss_conf             -----797577668656565789968-997658458


No 253
>cd05616 STKc_cPKC_beta STKc_cPKC_beta: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicin
Probab=96.99  E-value=0.0084  Score=37.74  Aligned_cols=136  Identities=19%  Similarity=0.248  Sum_probs=68.6

Q ss_pred             EECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             004668120017999439-9-5899982166--9988999---9999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|++.-.. | .|.+|+..+.  ....++.   .+.++|....++    |.++.-.+   ..+-.++.+.
T Consensus         6 k~LG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~----p~Iv~l~~---~f~~~~~lyl   78 (323)
T cd05616           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKP----PFLTQLHS---CFQTMDRLYF   78 (323)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CEEEEEEE---EEEECCEEEE
T ss_conf             7952276809999999999989999998278843847899999999999971799----92859999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.              ..+.+. ..++        .....            .....+...+..+.+    
T Consensus        79 VmEy~~gGdL~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~----  119 (323)
T cd05616          79 VMEYVNGGDLM--------------YQIQQV-GRFK--------EPHAV------------FYAAEIAIGLFFLHS----  119 (323)
T ss_pred             EEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             99588998089--------------999981-9999--------89999------------999999999999987----


Q ss_pred             CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             077744402234642256279-604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                         +++||.|+.|.|||++.+ .+. ++||+.|.
T Consensus       120 ---~~IiHRDLKPeNILl~~~g~iK-L~DFGlak  149 (323)
T cd05616         120 ---KGIIYRDLKLDNVMLDSEGHIK-IADFGMCK  149 (323)
T ss_pred             ---CCCCCCCCCCCCEEECCCCCEE-EEEHHHHH
T ss_conf             ---7975025477661476899778-85321544


No 254
>cd05602 STKc_SGK1 STKc_SGK1: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is as
Probab=96.99  E-value=0.01  Score=37.13  Aligned_cols=133  Identities=17%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-58999821669--9889---999999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... ++ .|.+|+..+..  ...+   +-.+.+.+  +  +.+.-|.+++-..   ..+-.++.+.+++
T Consensus         4 G~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il--l--~~l~hp~Iv~l~~---~f~~~~~lylvmE   76 (325)
T cd05602           4 GKGSFGKVLLARHKSDEKFYAVKVLQKKAILKKKEEKHIMSERNVL--L--KNVKHPFLVGLHF---SFQTTDKLYFVLD   76 (325)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHH--H--HHCCCCCCCEEEE---EEEECCEEEEEEE
T ss_conf             3184959999998899979999998378803768999999999999--9--8689998895999---9998999999995


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+.+. ..+.        ....            ......+...+..+.+       
T Consensus        77 y~~gGdL~--------------~~l~~~-~~~~--------e~~a------------~~~~~qi~~aL~yLH~-------  114 (325)
T cd05602          77 YINGGELF--------------YHLQRE-RCFL--------EPRA------------RFYAAEIASALGYLHS-------  114 (325)
T ss_pred             CCCCCCHH--------------HHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             78998689--------------999753-8999--------9999------------9999999999999998-------


Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             74440223464225627-9604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++. +.+. ++||+.|.
T Consensus       115 ~~IiHRDLKPeNILld~~g~ik-L~DFGlak  144 (325)
T cd05602         115 LNIVYRDLKPENILLDSQGHIV-LTDFGLCK  144 (325)
T ss_pred             CCCEECCCCCCCCCCCCCCCEE-EEECHHHH
T ss_conf             7965323576465637899888-71033556


No 255
>cd05590 STKc_nPKC_eta STKc_nPKC_eta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro
Probab=96.99  E-value=0.02  Score=35.37  Aligned_cols=134  Identities=19%  Similarity=0.251  Sum_probs=66.6

Q ss_pred             CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-99-58999821669--988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... +| .|.+|+..+..  ...++.   .+.++|..+..    -|.+++-.+   ..+-.++.+.+++
T Consensus         4 G~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~----hp~Iv~l~~---~f~~~~~~ylvmE   76 (320)
T cd05590           4 GKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARN----HPFLTQLYC---CFQTPDRLFFVME   76 (320)
T ss_pred             EECCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEE---EEEECCEEEEEEE
T ss_conf             118791999999999998999999807884384789999999999997279----997866999---9998999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+.+ ...++        ....            ......+...+..+.+       
T Consensus        77 y~~gGdL~--------------~~l~~-~~~l~--------e~~a------------~~~~~qi~~aL~yLH~-------  114 (320)
T cd05590          77 FVNGGDLM--------------FHIQK-SRRFD--------EARA------------RFYAAEITSALMFLHD-------  114 (320)
T ss_pred             CCCCCCHH--------------HHHHH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             67998799--------------99974-38999--------9999------------9999999999999987-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++.+...-++||+.|.
T Consensus       115 ~gIiHRDLKPeNILl~~~g~iKL~DFGlak  144 (320)
T cd05590         115 KGIIYRDLKLDNVLLDHEGHCKLADFGMCK  144 (320)
T ss_pred             CCEEECCCCCCCCEECCCCCEEECCHHHHH
T ss_conf             890762246753457468988970413534


No 256
>cd05632 STKc_GRK5 STKc_GRK5: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids
Probab=96.99  E-value=0.016  Score=35.92  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=71.6

Q ss_pred             EEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             10046681200179994-399-5899982166-998----8999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++.|..|.--+.|++.. .+| .|.+|+..+. ...    ...-.++++|..+....+     +.-.   ...+-.+..+
T Consensus         5 ~k~LG~G~fg~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~---~~~~~~~~~~   76 (285)
T cd05632           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFV-----VSLA---YAYETKDALC   76 (285)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEE
T ss_conf             2896028290999999999997999999817880135779999999999987699888-----8498---9999799899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             578647887076899899999999864367530-6875433231124564576675200155227889999999888765
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      .++++++|..+.    ..          ++... .+++        ....            ......+...++.+.+  
T Consensus        77 lv~E~~~gg~L~----~~----------i~~~~~~~~~--------e~~~------------~~~~~qi~~aL~ylH~--  120 (285)
T cd05632          77 LVLTIMNGGDLK----FH----------IYNMGNPGFE--------EERV------------LFYAAEICCGLEDLHR--  120 (285)
T ss_pred             EEEEECCCCCHH----HH----------HHHCCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             999963798489----99----------9962899999--------9999------------9999999999999988--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +|+||.|+.|.|||++++...-++||+.|.
T Consensus       121 -----~~IiHRDlKPeNILl~~~g~iKl~DFGla~  150 (285)
T cd05632         121 -----ENIVYRDLKPENILLDDYGHIRISDLGLAI  150 (285)
T ss_pred             -----CCCCCCCCCHHHHCCCCCCEEEEEECCCEE
T ss_conf             -----887516788666053479818996557427


No 257
>cd07859 STKc_TDY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved 
Probab=96.99  E-value=0.018  Score=35.56  Aligned_cols=139  Identities=13%  Similarity=0.185  Sum_probs=67.0

Q ss_pred             EECCCCCEEEEEEEE-ECCCC-EEEEEECCC----CCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             004668120017999-43995-899982166----9988999999999998532677-5551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQ-TSKGT-FILTIYEKR----MNEKDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~-t~~~~-yiLri~e~~----~~~~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +-|..|.--+.|... ..+|+ +.+|+..+.    .....+-.|+.+|..|..-++. +-......+...    .+..+.
T Consensus         6 ~~IG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~----~~~~yi   81 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRRE----FKDIYV   81 (338)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC----CCEEEE
T ss_conf             5974272849999998899989999998812308578999999999998679959884889995178665----665899


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      ++++++|.-         .+   .+.    ....++        .....            .....+...+..+.+    
T Consensus        82 v~e~~~~~L---------~~---~i~----~~~~l~--------~~~~~------------~~~~Qil~aL~ylH~----  121 (338)
T cd07859          82 VFELMESDL---------HQ---VIK----ANDDLT--------PEHHQ------------FFLYQLLRALKYIHT----  121 (338)
T ss_pred             EEEECCCCH---------HH---HHH----HCCCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             997059847---------88---876----269999--------99999------------999999999999978----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .|+||.|+.|.|||++.+...-|+||+.|.
T Consensus       122 ---~~IiHRDLKPeNIL~~~~~~vKl~DFGlar  151 (338)
T cd07859         122 ---ANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             ---CCCEEECCCHHEEEECCCCCEEECCCCEEE
T ss_conf             ---788430054310788689976521355135


No 258
>cd05046 PTK_CCK4 Catalytic Domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon carcinoma kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is stil
Probab=96.98  E-value=0.033  Score=33.93  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=74.2

Q ss_pred             CEEEEEECCCCCEEEEEEEEECC------CC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             60531004668120017999439------95-8999821669988---99999999999853267755510010267787
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTSK------GT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~~------~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
                      .+..++.|..|.=-+.|+.....      .+ ..+|......+..   ++..|+++|..|+.     |.+++-. |  +.
T Consensus         6 ~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~H-----pnIV~l~-g--~~   77 (275)
T cd05046           6 NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSH-----KNVVRLL-G--LC   77 (275)
T ss_pred             HCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EE
T ss_conf             99842498028885899999888865678589999983756786899999999999986899-----7999199-9--99


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             52245155786478870768998999999998643675306875433231124564576675200155227889999999
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC  172 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (316)
                      ...+..+.+++|++|.++..           .   |+.............+.   +...+         .+...+...+.
T Consensus        78 ~~~~~~~ivmEy~~~G~L~~-----------~---l~~~~~~~~~~~~~~l~---~~~~~---------~i~~qia~gl~  131 (275)
T cd05046          78 REAEPHYMILEYTDLGDLKQ-----------F---LRATKSKDEKLKPPPLS---TKQKV---------ALCTQIALGMD  131 (275)
T ss_pred             EECCEEEEEEECCCCCCHHH-----------H---HHHCCCCCCCCCCCCCC---HHHHH---------HHHHHHHHHHH
T ss_conf             88994699995558984999-----------9---98624554334578889---99999---------99999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             88876521077744402234642256279604873162135
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+.+       .++||+|+.+.|||++.+...-|-||+.+.
T Consensus       132 yLH~-------~~iiHrDLKp~NiLl~~~~~~Ki~DfGls~  165 (275)
T cd05046         132 HLSN-------ARFVHRDLAARNCLVSSQREVKVSLLSLSK  165 (275)
T ss_pred             HHHC-------CCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             9961-------993167545240898279967860021010


No 259
>cd05070 PTKc_Fyn_Yrk Catalytic Domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=96.98  E-value=0.033  Score=33.91  Aligned_cols=142  Identities=13%  Similarity=0.178  Sum_probs=79.6

Q ss_pred             CEEEEEECCCCCEEEEEEEEECC-CCEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             60531004668120017999439-95899982166-99889999999999985326775551001026778752245155
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTSK-GTFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~~-~~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      ++.-++.|..|.--+.|+-.... ++..+|.++.. ...+.+-.|+++|..|+..+|     ++-. |-   ...+..+.
T Consensus         7 ~~~~~~~IG~G~fG~Vy~g~~~~~~~VAiK~l~~~~~~~~~f~~E~~il~~l~H~nI-----v~~~-g~---~~~~~~~l   77 (260)
T cd05070           7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKL-----VQLY-AV---VSEEPIYI   77 (260)
T ss_pred             HEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-----CEEE-EE---EECCCEEE
T ss_conf             989747982188858999999999999999988367997999999999986899898-----9499-99---93697599


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++..              .|+. ..+-.      ..   +...         ..+...+...+..+.+    
T Consensus        78 v~Ey~~~G~L~~--------------~l~~-~~~~~------~~---~~~~---------~~i~~qia~gL~yLH~----  120 (260)
T cd05070          78 VTEYMSKGSLLD--------------FLKD-GEGRA------LK---LPNL---------VDMAAQVAAGMAYIER----  120 (260)
T ss_pred             EEECCCCCCHHH--------------HHHH-CCCCC------CC---HHHH---------HHHHHHHHHHHHHHHH----
T ss_conf             998179998999--------------9862-88887------99---9999---------9999999999999855----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         ++++|+|+.+.|||++.+...-+.||+.|.
T Consensus       121 ---~~iiHrDlKp~NiLl~~~~~~KL~DFGla~  150 (260)
T cd05070         121 ---MNYIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             ---CCCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             ---892345046172888789978985658671


No 260
>cd05575 STKc_SGK STKc_SGK: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis.
Probab=96.97  E-value=0.014  Score=36.40  Aligned_cols=134  Identities=17%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-58999821669--98899---9999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
                      |..|.--+.|++.-. +| .|.+|+..+..  ...+.   ..+...|   . +.+.-|.+++-..   ..+-.++.+.++
T Consensus         3 LG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il---~-~~l~Hp~Iv~l~~---~f~~~~~~ylvm   75 (323)
T cd05575           3 IGKGSFGKVLLAKHKEDGKFYAVKVLQKKAILKKNEQKHIMAERNVL---L-KNVKHPFLVGLHY---SFQTKEKLYFVL   75 (323)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHH---H-HHCCCCCCCEEEE---EEEECCEEEEEE
T ss_conf             73284959999998899989999998278835878999999999999---9-8689998894999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
                      +|++|..+.              ..+.+. ..++        .....            .....+...+..+.+      
T Consensus        76 Ey~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~ylH~------  114 (323)
T cd05575          76 DYVNGGELF--------------FHLQRE-RSFP--------EPRAR------------FYAAEIASALGYLHS------  114 (323)
T ss_pred             ECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------
T ss_conf             688998889--------------999874-9999--------99999------------999999999999998------


Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             774440223464225627-9604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                       +++||.|+.|+|||++. +.+. ++||+.|.
T Consensus       115 -~~IiHRDLKPeNILl~~~g~ik-L~DFGlak  144 (323)
T cd05575         115 -LNIIYRDLKPENILLDSKGHVV-LTDFGLCK  144 (323)
T ss_pred             -CCCCCCCCCCCCCCCCCCCCEE-EEECHHHH
T ss_conf             -7944356674333205899788-60201534


No 261
>cd05630 STKc_GRK6 STKc_GRK6: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translatio
Probab=96.94  E-value=0.025  Score=34.69  Aligned_cols=138  Identities=16%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             100466812001799943-99-5899982166-9988----999999999998532677555100102677875224515
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      ++-|..|.--+.|++... +| .|.+|+..+. ....    ..-.|+.+|..+....+     ++-.   ...+-++..+
T Consensus         5 ~k~lG~G~fG~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~---~~~~~~~~~~   76 (285)
T cd05630           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFV-----VSLA---YAYETKDALC   76 (285)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEE
T ss_conf             0897027281999999989997999999837880235789999999999987699888-----9498---9998699899


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .++++++|..+..    .+...|         ..+++        ....            ......+...++.+.+   
T Consensus        77 lv~e~~~ggdL~~----~i~~~~---------~~~~~--------e~~~------------~~~~~qi~~al~ylH~---  120 (285)
T cd05630          77 LVLTLMNGGDLKF----HIYHMG---------EAGFE--------EGRA------------VFYAAEICCGLEDLHQ---  120 (285)
T ss_pred             EEEEECCCCCHHH----HHHHCC---------CCCCC--------HHHH------------HHHHHHHHHHHHHHHH---
T ss_conf             9999536991899----999718---------89999--------9999------------9999999999999987---


Q ss_pred             HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             1077744402234642256279-604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||++++ .+. ++||+.|.
T Consensus       121 ----~~IiHRDlKPeNILl~~~g~vK-l~DFGla~  150 (285)
T cd05630         121 ----ERIVYRDLKPENILLDDHGHIR-ISDLGLAV  150 (285)
T ss_pred             ----CCCCCCCCCCCCEEECCCCCEE-EEECCCCE
T ss_conf             ----9865377773305356999789-98456226


No 262
>KOG0615 consensus
Probab=96.94  E-value=0.0047  Score=39.40  Aligned_cols=31  Identities=35%  Similarity=0.686  Sum_probs=25.1

Q ss_pred             CCCEEECCCCCCCEEECCC---CCEEEECCCCCC
Q ss_conf             7744402234642256279---604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNN---KIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~---~i~giIDF~~~~  213 (316)
                      .+|+||.|+.|+|||...+   -+.-|-||+.|-
T Consensus       294 ~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK  327 (475)
T KOG0615         294 SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAK  327 (475)
T ss_pred             HCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHH
T ss_conf             7585025677113775157742589850244222


No 263
>cd05579 STKc_MAST_like STKc_MAST_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harb
Probab=96.91  E-value=0.02  Score=35.33  Aligned_cols=133  Identities=21%  Similarity=0.277  Sum_probs=70.1

Q ss_pred             CCCCEEEEEEEEECC-C-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             668120017999439-9-5899982166--998---89999999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTSK-G-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++.-.. | .|.+|+....  ...   +.+..|+.+|..|..     |.+++-.+   ..+-++..+.+++
T Consensus         2 G~G~fg~V~~~~~~~t~~~~AvK~i~~~~~~~~~~~~~~~~E~~~l~~l~h-----pnIv~~~~---~~~~~~~~~ivmE   73 (265)
T cd05579           2 SKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERNILSQAQN-----PFVVKLYY---SFQGKKNLYLVME   73 (265)
T ss_pred             CCCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEE
T ss_conf             688190899999899998999999817886687899999999999997799-----99891999---9998998999984


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|.++..           .+   ++. ..++        .....            .....+...+..+.+       
T Consensus        74 ~~~gg~L~~-----------~l---~~~-~~l~--------e~~~~------------~~~~qll~gl~~lH~-------  111 (265)
T cd05579          74 YLPGGDLAS-----------LL---ENV-GSLD--------EDMAR------------IYIAEIVLALEYLHS-------  111 (265)
T ss_pred             CCCCCCHHH-----------HH---HHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             799990899-----------99---876-9999--------99999------------999999999999998-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++++...-++||+.|.
T Consensus       112 ~~ivHRDIKpeNiLl~~~g~vKl~DFGls~  141 (265)
T cd05579         112 NGIIHRDLKPDNILIDSNGHLKLTDFGLSK  141 (265)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             884526575333668799988981045684


No 264
>cd07877 STKc_p38alpha_MAPK14 The catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase subfamily. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also
Probab=96.88  E-value=0.016  Score=35.90  Aligned_cols=143  Identities=15%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHCCC
Q ss_conf             5310046681200179994-3995-8999821669----9889999999999985326775551001-026778752245
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRM----NEKDLPVFIELLHYISRNKLPCPIPIPR-NDGKLYGFLCKK   97 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~----~~~~l~~~~~ll~~L~~~gipvP~pi~~-~~G~~~~~~~~k   97 (316)
                      .-++.|..|.--+.|.... ..|+ +.+|+..+..    .......|+++|.+|...++.  ..+-. ..+..+.. .+.
T Consensus        20 ~i~~~IG~G~fG~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~iL~~l~HpnIv--~l~d~f~~~~~~~~-~~~   96 (345)
T cd07877          20 QNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVI--GLLDVFTPARSLEE-FND   96 (345)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCC-CCC
T ss_conf             880297327084999999889998999999883000558899999999999866799933--26778831664344-770


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                       .+++.++.|..+.        .       +.+. ..++        .....            .....+...+..+.+ 
T Consensus        97 -~~iv~~~~g~~L~--------~-------~~~~-~~l~--------e~~i~------------~i~~Qil~aL~ylH~-  138 (345)
T cd07877          97 -VYLVTHLMGADLN--------N-------IVKC-QKLT--------DDHVQ------------FLIYQILRGLKYIHS-  138 (345)
T ss_pred             -EEEEEECCCCCHH--------H-------HHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-
T ss_conf             -8999927998899--------9-------9862-8999--------99999------------999999999999998-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             5210777444022346422562796048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                            +|+||.|+.|.|||++++...-|+||+.|+.
T Consensus       139 ------~gIiHRDIKPeNILl~~~~~vKL~DFGlAr~  169 (345)
T cd07877         139 ------ADIIHRDLKPSNLAVNEDCELKILDFGLARH  169 (345)
T ss_pred             ------CCCEECCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf             ------8845455774552456778779996367754


No 265
>cd05576 STKc_RPK118_like STKc_RPK118_like: Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 
Probab=96.86  E-value=0.015  Score=36.11  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             EEEEEEEC-CC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf             01799943-99-58999821669988999999999998532677555100102677875224515578647887076899
Q gi|254780795|r   37 SNFVIQTS-KG-TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHIS  114 (316)
Q Consensus        37 tny~v~t~-~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~  114 (316)
                      +.|++.-. .| .|.+|+.++..   ....+.  .. +.+..  .|..++-.+   ..+-.+..+.+++|++|..+..  
T Consensus         8 ~V~l~~~~~t~~~~AiK~i~k~~---~~~~e~--~~-l~~~~--~p~Iv~l~~---~~~~~~~~ylvmEy~~gg~L~~--   74 (237)
T cd05576           8 KVLLVMDTRTQQTFILKGLRKSS---EYSRER--LT-IIPHC--VPNMVCLHK---YIVSEDSVFLVLQHAEGGKLWS--   74 (237)
T ss_pred             EEEEEEECCCCCEEEEEEECHHH---HHHHHH--HH-HHHCC--CCCCCEEEE---EEEECCEEEEEEECCCCCCHHH--
T ss_conf             89999987999999999981415---577999--99-99708--998676999---9998999999995779994899--


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf             89999999986436753068754332311245645766752001552278899999998887652107774440223464
Q gi|254780795|r  115 DIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPD  194 (316)
Q Consensus       115 ~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~  194 (316)
                               .+.+-    ..++        .....            .....+...+..+.+       +|++|.|+.|+
T Consensus        75 ---------~i~~~----~~l~--------e~~~~------------~~~~qll~al~~lH~-------~~ivHrDiKPe  114 (237)
T cd05576          75 ---------HISKF----LNIP--------EECVK------------RWAAEMVVALDALHR-------EGIVCRDLNPN  114 (237)
T ss_pred             ---------HHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------CCEEEEECCCC
T ss_conf             ---------99875----9999--------99999------------999999999999997-------89675115643


Q ss_pred             CEEECCCCCEEEECCCCCC
Q ss_conf             2256279604873162135
Q gi|254780795|r  195 NVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       195 NiL~~~~~i~giIDF~~~~  213 (316)
                      |+|++++...-+.||+.+.
T Consensus       115 Nill~~~~~ikl~dfg~~~  133 (237)
T cd05576         115 NILLDDRGHIQLTYFSRWS  133 (237)
T ss_pred             EEEECCCCCEEEEECCCCH
T ss_conf             1788799979997646514


No 266
>cd05596 STKc_ROCK STKc_ROCK: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesio
Probab=96.86  E-value=0.0089  Score=37.59  Aligned_cols=140  Identities=13%  Similarity=0.120  Sum_probs=72.6

Q ss_pred             CCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             86053100466812001799943-99-58999821669--988---9999999999985326775551001026778752
Q gi|254780795|r   22 GQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        22 g~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      .+..-++-|..|.--..|+++-. +| .|.+|+..+..  ...   .+..|.++|..+..     |-+++-..   .++-
T Consensus        43 dDFe~lk~lG~G~FG~V~lv~~k~tg~~yA~K~i~K~~~~~~~~~~~~~~E~~il~~~~h-----p~IV~l~~---~Fqd  114 (370)
T cd05596          43 EDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANS-----EWIVQLHY---AFQD  114 (370)
T ss_pred             HHCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEE
T ss_conf             885682268507284999999989998999999878996526789999999999986799-----98784899---9986


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      .+..+.+++|++|..+.           ..+   .+  ..++        .....            -...++...+..+
T Consensus       115 ~~~lylVmEy~~GGdL~-----------~ll---~~--~~l~--------E~~a~------------~y~aqi~~aL~yL  158 (370)
T cd05596         115 DKYLYMVMEYMPGGDLV-----------NLM---SN--YDIP--------EKWAR------------FYTAEVVLALDAI  158 (370)
T ss_pred             CCEEEEEEECCCCCCHH-----------HHH---HC--CCCC--------HHHHH------------HHHHHHHHHHHHH
T ss_conf             99999999489997489-----------998---73--7989--------99999------------9999999999998


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             87652107774440223464225627960487316213
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      .       ..|+||.|+.|.|+|++.+...-++||+.|
T Consensus       159 H-------~~~iiHRDLKPeNiLld~~G~iKL~DFGla  189 (370)
T cd05596         159 H-------SMGFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (370)
T ss_pred             H-------CCCEEECCCCCCCCCCCCCCCEEECCHHHH
T ss_conf             0-------086782257776531147886640352561


No 267
>cd05620 STKc_nPKC_delta STKc_nPKC_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhanc
Probab=96.83  E-value=0.02  Score=35.34  Aligned_cols=133  Identities=21%  Similarity=0.218  Sum_probs=65.4

Q ss_pred             CCCCEEEEEEEEEC-CCC-EEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             66812001799943-995-8999821669--988999---9999999985326775551001026778752245155786
Q gi|254780795|r   31 IHGVENSNFVIQTS-KGT-FILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        31 ~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      ..|.--+.|++... +|+ |.+|+..+..  ...++.   .+..+|...    ..-|.+++-..   ...-.+..+.+++
T Consensus         4 G~G~fG~V~la~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~e~~il~~~----~~hp~Iv~l~~---~f~~~~~lylvmE   76 (316)
T cd05620           4 GKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALA----WENPFLTHLYC---TFQTKEHLFFVME   76 (316)
T ss_pred             EECCCEEEEEEEECCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEEE---EEEECCEEEEEEE
T ss_conf             5287949999999999989999998366624605799999999999985----79996826999---9998999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|..+.              ..+...  +       ........            .....+...++.+.+       
T Consensus        77 y~~gGdL~--------------~~l~~~--~-------~~~e~~~~------------~~~~qi~~aL~yLH~-------  114 (316)
T cd05620          77 FLNGGDLM--------------FHIQDK--G-------RFDLYRAT------------FYAAEIVCGLQFLHS-------  114 (316)
T ss_pred             CCCCCCHH--------------HHHHHC--C-------CCCHHHHH------------HHHHHHHHHHHHHHH-------
T ss_conf             67998887--------------878744--9-------99999999------------999999999999997-------


Q ss_pred             CCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             744402234642256279-604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                      +|+||.|+.|.|||++.+ .+. ++||+.|.
T Consensus       115 ~~IiHRDlKPeNILl~~~g~iK-L~DFGlak  144 (316)
T cd05620         115 KGIIYRDLKLDNVMLDRDGHIK-IADFGMCK  144 (316)
T ss_pred             CCCEECCCCCCCCCCCCCCCEE-EEECCEEH
T ss_conf             8905230376555505899789-83214000


No 268
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.82  E-value=0.028  Score=34.34  Aligned_cols=137  Identities=17%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             CCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC------CC
Q ss_conf             46681200179994-399-5899982166-99889---9999999999853267755510010267787522------45
Q gi|254780795|r   30 IIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC------KK   97 (316)
Q Consensus        30 i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~------~k   97 (316)
                      |..|.--+.|+++- .+| .|.+|+.... .+..+   +..|+.+|..+.     -|.+++-.+. ......      ..
T Consensus        40 IGrGsFGkVyLar~k~tG~lvAvK~I~l~~ms~kd~~~a~~EV~iL~~l~-----HpnIVkl~e~-Fv~~d~~~~e~~~~  113 (496)
T PTZ00283         40 LGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCD-----FFSIVKCHED-FAKKDPRNPENVLM  113 (496)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEHH-HCCCCCCCCCCCCE
T ss_conf             98289879999999799978999998403378688999999999997289-----9875455553-21057555556547


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530---687543323112456457667520015522788999999988
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT---KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~---~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      .+.+++|++|..+.              ..+.+..   +.|+.        ....            .....+...+..+
T Consensus       114 LyIVMEY~~GGdL~--------------~~I~~r~k~~~~f~E--------~~a~------------~~~~Qi~~al~yl  159 (496)
T PTZ00283        114 IALVLDYANAGDLR--------------QEIKSRAKTNRTFRE--------HEAG------------LLFIQVLLAVHHV  159 (496)
T ss_pred             EEEEEECCCCCCHH--------------HHHHHHHHCCCCCCH--------HHHH------------HHHHHHHHHHHHH
T ss_conf             99999258998579--------------999986542788789--------9999------------9999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             876521077744402234642256279604873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+       +++||.|+.+.|||+..+...-+.||+.|-
T Consensus       160 H~-------~~iiHRDlK~~Nill~~~g~vKl~DFG~sk  191 (496)
T PTZ00283        160 HS-------KHMIHRDIKSANILLCSNGLVKLGDFGFSK  191 (496)
T ss_pred             HH-------CCCCCCCCCHHHEEECCCCCEEECCCCCCH
T ss_conf             97-------892414477766788689988987565202


No 269
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=96.79  E-value=0.046  Score=32.95  Aligned_cols=144  Identities=16%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             EEEEEECCCCCEEEEEEEE-----ECCCCE-EEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             0531004668120017999-----439958-9998216699--8899999999999853267755510010267787522
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQ-----TSKGTF-ILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~-----t~~~~y-iLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
                      +.-++.|..|.--+.|+..     .++|+. .+|..+....  ..++..|+.+|..|...     .+++-. |-.+..-.
T Consensus         6 ~~~~~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~~~~~~~~~~Ei~il~~l~Hp-----NIv~~~-g~~~~~~~   79 (284)
T cd05081           6 LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHD-----NIVKYK-GVCYSAGR   79 (284)
T ss_pred             CEEEEEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----CEEEEE-EEEECCCC
T ss_conf             299999714738599987982505788819999998877868899999999999976899-----882588-89972899


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
                      ...+.+++|++|.++..              -|++..        +........            .....+..-+..+.
T Consensus        80 ~~~~lV~Ey~~~GsL~~--------------~L~~~~--------~~~~~~~~~------------~~~~~ia~gl~yLH  125 (284)
T cd05081          80 RNLRLVMEYLPYGSLRD--------------YLQKHR--------ERLDHRKLL------------LYASQICKGMEYLG  125 (284)
T ss_pred             CEEEEEEECCCCCCHHH--------------HHHHCC--------CCCCHHHHH------------HHHHHHHHHHHHHH
T ss_conf             67999996489899899--------------997478--------889999999------------99999999999883


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             765210777444022346422562796048731621356
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +       +++||+|+.+.|||++++...-|-||+.|..
T Consensus       126 ~-------~~iiHrDlK~~NILld~~~~~Kl~DFGla~~  157 (284)
T cd05081         126 S-------KRYVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             H-------CCCCCCCCCHHEEEECCCCCEEEECCCCCEE
T ss_conf             3-------8914166764207988999589903675226


No 270
>cd05067 PTKc_Lck_Blk Catalytic Domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=96.78  E-value=0.048  Score=32.87  Aligned_cols=141  Identities=13%  Similarity=0.206  Sum_probs=76.9

Q ss_pred             EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             05310046681200179994399-5899982166-998899999999999853267755510010267787522451557
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.-++.|..|.--+.|+....++ +..+|..... ...+.+-.|+++|..|+..+     +++-. |-   ..++..+.+
T Consensus         8 ~~~~~~iG~G~fg~Vy~~~~~~~~~VAvK~l~~~~~~~~~f~~E~~il~~l~Hpn-----IV~~~-g~---~~~~~~~lv   78 (260)
T cd05067           8 LKLVKKLGAGQFGEVWMGYYNNHTKVAIKSLKEGTMSPEAFLAEANLMKQLQHER-----LVRLY-AV---VTQEPIYIV   78 (260)
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-----CCCEE-EE---EECCCEEEE
T ss_conf             7973598318785999999889989999998967899999999999998689978-----98199-99---956963999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|..+..           .|   +. ..+.+      ..   +...         -.....+...+..+.+     
T Consensus        79 ~Ey~~~G~L~~-----------~l---~~-~~~~~------l~---~~~~---------~~i~~qia~gl~yLH~-----  120 (260)
T cd05067          79 TEYMENGSLVD-----------FL---KT-PEGIK------LT---INKL---------IDMAAQIAEGMAYIER-----  120 (260)
T ss_pred             EEECCCCCHHH-----------HH---HH-CCCCC------CC---HHHH---------HHHHHHHHHHHHHHHH-----
T ss_conf             99069988999-----------98---30-67899------99---9999---------9999999999999974-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        +++||+|+.+.|||++.+...-|-||+.|.
T Consensus       121 --~~ivHrDlKp~NILl~~~~~~Kl~DFGls~  150 (260)
T cd05067         121 --KNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             --CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             --897605466211898699988971035506


No 271
>PRK12274 serine/threonine protein kinase; Provisional
Probab=96.75  E-value=0.011  Score=36.91  Aligned_cols=81  Identities=15%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             CCEEECCC-CCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCCHHHHH
Q ss_conf             74440223-4642256279604873162135680001989999864311688878788999998876418--89989999
Q gi|254780795|r  184 TGIIHADL-FPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVR--KISENELQ  260 (316)
Q Consensus       184 ~g~IHgDl-~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vr--pLs~~E~~  260 (316)
                      .|++|||+ +++|+|+..|.-..+|||.-|....+---+--.+   |.        +-...+++.-..-.  |||+.|.+
T Consensus        90 ~Gv~H~DLak~~N~L~~~dg~p~liDFQlA~~~~rr~~~~Ril---a~--------eDlrhllK~kr~y~~e~Ltp~e~~  158 (198)
T PRK12274         90 CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLL---AR--------EDLRHLLKHKRMYCPAALTPVERR  158 (198)
T ss_pred             CCCCCCHHCCCCCEEECCCCCEEEEEEEECCCCCCHHHHHHHH---HH--------HHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             3774420205558888799997889744100236303899999---99--------989999998886389889989999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780795|r  261 SLPTLLRGAALRFFLTR  277 (316)
Q Consensus       261 ~l~~ll~~aalRf~lsr  277 (316)
                      .|--.-..+  |.|+.+
T Consensus       159 ~L~r~s~~r--rlW~at  173 (198)
T PRK12274        159 VLKRTSWIR--ELWFAT  173 (198)
T ss_pred             HHHHHHHHH--HHHHHC
T ss_conf             998400677--878873


No 272
>cd05088 PTKc_Tie2 Catalytic Domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=96.74  E-value=0.051  Score=32.66  Aligned_cols=149  Identities=15%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             EECCCCCEEEEEEEEECC-CC-E--EEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             004668120017999439-95-8--999821669988---9999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSK-GT-F--ILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~-~~-y--iLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +-|..|.--+.|+....+ |. .  .++........+   ++..|+++|..|.++    |.+++-. |  .....+..+.
T Consensus        13 ~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~~~~~f~~E~~il~~l~~H----pnIv~l~-g--~~~~~~~~~l   85 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH----PNIINLL-G--ACEHRGYLYL   85 (303)
T ss_pred             EEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EEEECCEEEE
T ss_conf             7995077849999999389979999999978444847899999999999862699----9888898-8--9832897899


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522----78899999998887
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED----LKKEIDHEFCFLKE  176 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~  176 (316)
                      +++|++|.++..              -+++. +..+.  ....      .........++..    ....+...+..+. 
T Consensus        86 v~Ey~~~G~L~~--------------~l~~~-~~~~~--~~~~------~~~~~~~~~l~~~~~l~i~~qIa~gl~yLH-  141 (303)
T cd05088          86 AIEYAPHGNLLD--------------FLRKS-RVLET--DPAF------AIANSTASTLSSQQLLHFAADVARGMDYLS-  141 (303)
T ss_pred             EEECCCCCCHHH--------------HHHHC-CCCCC--CCCH------HHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf             997479985999--------------99754-66555--6201------002354567899999999999999999871-


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             6521077744402234642256279604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                            .+++||.|+.+.|||++++...-|.||+.|.
T Consensus       142 ------~~~IiHRDLKp~NILl~~~~~~KI~DFGls~  172 (303)
T cd05088         142 ------QKQFIHRDLAARNILVGENYVAKIADFGLSR  172 (303)
T ss_pred             ------CCCEEECCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             ------1986745577411788899978998267786


No 273
>KOG0605 consensus
Probab=96.73  E-value=0.02  Score=35.31  Aligned_cols=28  Identities=46%  Similarity=0.663  Sum_probs=22.0

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf             74440223464225627-960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~  212 (316)
                      .|.||.|+.|+|+|.+. |.|. +=||+-|
T Consensus       260 ~gyIHRDIKPdNlLiD~~GHiK-LSDFGLs  288 (550)
T KOG0605         260 LGYIHRDIKPDNLLIDAKGHIK-LSDFGLS  288 (550)
T ss_pred             CCCCCCCCCHHHEEECCCCCEE-ECCCCCC
T ss_conf             5851256774444565779776-0013466


No 274
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232   This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process.
Probab=96.72  E-value=0.0022  Score=41.56  Aligned_cols=47  Identities=26%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             CCCCCEEECCCCCCCEEECCC----CCEEEECCCCCCC---CHHHCCHHHHHHHH
Q ss_conf             077744402234642256279----6048731621356---80001989999864
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNN----KIMGLIDFYFSCN---DFLMYDLSICINAW  228 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~----~i~giIDF~~~~~---~~~i~DLAi~i~~~  228 (316)
                      -+.-|+=|+|+||+|+|+..+    .-..+||||-++.   ..+-| ||-.+-++
T Consensus       284 v~rDGfFHAD~HpGNI~v~~d~~~Ng~i~~~DFGIVG~l~~~~r~~-LAE~l~Gf  337 (452)
T TIGR01982       284 VLRDGFFHADLHPGNIFVLKDPERNGKIIALDFGIVGRLSEEDRRY-LAEILYGF  337 (452)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH-HHHHHHHH
T ss_conf             9971588788475663324787768808998537420013788999-99999999


No 275
>KOG0667 consensus
Probab=96.71  E-value=0.0024  Score=41.33  Aligned_cols=31  Identities=48%  Similarity=0.846  Sum_probs=25.9

Q ss_pred             CCEEECCCCCCCEEECC---CCCEEEECCCCCCCC
Q ss_conf             74440223464225627---960487316213568
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN---NKIMGLIDFYFSCND  215 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~---~~i~giIDF~~~~~~  215 (316)
                      .++||+||.|-|||..+   .+|. ||||+-+|..
T Consensus       308 l~IIHcDLKPENILL~~~~r~~vK-VIDFGSSc~~  341 (586)
T KOG0667         308 LGIIHCDLKPENILLKDPKRSRIK-VIDFGSSCFE  341 (586)
T ss_pred             CCEEECCCCHHHEEECCCCCCCEE-EEECCCCCCC
T ss_conf             796242587576564167767616-9844531114


No 276
>cd05045 PTKc_RET Catalytic Domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (rearranged during transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=96.69  E-value=0.055  Score=32.46  Aligned_cols=30  Identities=33%  Similarity=0.455  Sum_probs=25.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||.+++...-|.||+.|.
T Consensus       141 ~~iiHRDlK~~NILl~~~~~~Ki~DFGls~  170 (285)
T cd05045         141 MKLVHRDLAARNVLVAEGRKMKISDFGLSR  170 (285)
T ss_pred             CCCEECCCCCCEEEECCCCCEEEECCCCCC
T ss_conf             890605677472888689968871151110


No 277
>cd05148 PTKc_Srm_Brk Catalytic Domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=96.68  E-value=0.056  Score=32.41  Aligned_cols=139  Identities=15%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             EEECCCCCEEEEEEEEECCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             10046681200179994399-58999821669--9889999999999985326775551001026778752245155786
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      .+.|..|.--+.|+....++ +..+|+.....  ...++..|+.+|..|+..+|     ++-. |  +....+..+.+++
T Consensus        11 ~~~iG~G~fg~Vy~~~~~~~~~VAvK~i~~~~~~~~~~f~~Ei~~l~~l~HpnI-----v~~~-g--~~~~~~~~~iv~E   82 (261)
T cd05148          11 ERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHL-----ISLF-A--VCSVGEPVYIITE   82 (261)
T ss_pred             EEEEECCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEEECCEEEEEEE
T ss_conf             029951888399999999998999999874672789999999999986799888-----4187-7--9921998999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |++|.++..           .   |+.. .+      ....   +....         .+...+...+..+.+       
T Consensus        83 y~~~GsL~~-----------~---l~~~-~~------~~l~---~~~~~---------~i~~qia~gl~yLH~-------  122 (261)
T cd05148          83 LMEKGSLLA-----------F---LRSP-EG------QVLP---VASLI---------DMACQVAEGMAYLEE-------  122 (261)
T ss_pred             CCCCCCHHH-----------H---HHCC-CC------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------
T ss_conf             179983899-----------8---6244-68------8799---99999---------999999999999986-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||.+.+...-+-||+.+.
T Consensus       123 ~~iiHrDLK~~NiLl~~~~~~Kl~DFGls~  152 (261)
T cd05148         123 QNSIHRDLAARNILVGEDLVCKVADFGLAR  152 (261)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEECCCCCCE
T ss_conf             996667566176998899949981475546


No 278
>cd05060 PTKc_Syk_like Catalytic Domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=96.67  E-value=0.057  Score=32.35  Aligned_cols=133  Identities=17%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEEE--EECCCC---EEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             466812001799--943995---89998216699---8899999999999853267755510010267787522451557
Q gi|254780795|r   30 IIHGVENSNFVI--QTSKGT---FILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        30 i~~G~~Ntny~v--~t~~~~---yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      |..|.--+.|+-  .+.+++   ..+|++.....   ..++..|+++|..|.     -|.+++.- |-   ...+..+.|
T Consensus         3 iG~G~fg~Vy~g~~~~~~~~~~~VAiK~~~~~~~~~~~~~f~~E~~~l~~l~-----HpnIv~~~-g~---~~~~~~~lV   73 (257)
T cd05060           3 LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLD-----HPCIVRLI-GV---CKGEPLMLV   73 (257)
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEEEECHHHCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-EE---EECCCEEEE
T ss_conf             8558885899899986898489999999882218678999999999998679-----99884264-18---936936999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|++|.++..           .|   +.. ..+        ..   ...+         .+...+...+..+.+     
T Consensus        74 ~Ey~~~G~L~~-----------~l---~~~-~~~--------~~---~~~~---------~~~~qia~gl~yLH~-----  113 (257)
T cd05060          74 MELAPLGPLLK-----------YL---KKR-REI--------PV---SDLK---------ELAHQVAMGMAYLES-----  113 (257)
T ss_pred             EECCCCCCHHH-----------HH---HHC-CCC--------CH---HHHH---------HHHHHHHHHHHHHHH-----
T ss_conf             98689999999-----------99---867-999--------99---9999---------999999999999986-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        ++++|+|+.+.|||++.+...-|.||+.+.
T Consensus       114 --~~ivHrDlK~~NiLl~~~~~vKl~DFGls~  143 (257)
T cd05060         114 --KHFVHRDLAARNVLLVNRHQAKISDFGMSR  143 (257)
T ss_pred             --CCEEECCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             --995616567042578689978884140320


No 279
>cd05057 PTKc_EGFR_like Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=96.66  E-value=0.058  Score=32.32  Aligned_cols=139  Identities=15%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             EEEEECCCCCEEEEEEEE-ECCC-----CEEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             531004668120017999-4399-----58999821669988999---99999999853267755510010267787522
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQ-TSKG-----TFILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~-t~~~-----~yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
                      ..++.|..|.--+.|+-. ..+|     +..+|+.....+.+...   .|+.+|..|     ..|.+++-. |-.   ..
T Consensus        10 e~~~~lG~G~fG~Vyk~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-----~HpnIv~l~-g~~---~~   80 (279)
T cd05057          10 EKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREATSPKANKEILDEAYVMASV-----DHPHVVRLL-GIC---LT   80 (279)
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCCCEEEEC-EEE---EC
T ss_conf             882697318881999899927998600799999988767878999999999999847-----999886001-289---54


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
                      ...+.+++|++|.++.              .-+|.....+        ..   ...+         .+...+...++.+.
T Consensus        81 ~~~~lV~e~~~~GsL~--------------~~l~~~~~~l--------~~---~~~~---------~~~~qia~gl~yLH  126 (279)
T cd05057          81 SQVQLITQLMPLGCLL--------------DYVRNHKDNI--------GS---QYLL---------NWCVQIAKGMSYLE  126 (279)
T ss_pred             CCEEEEEEECCCCCHH--------------HHHHHCCCCC--------CH---HHHH---------HHHHHHHHHHHHHH
T ss_conf             9769999957999589--------------9997347899--------99---9999---------99999999999997


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             76521077744402234642256279604873162135
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +       +++||+|+.+.|||++.+...-+-||+.+.
T Consensus       127 ~-------~~iiHRDlK~~NILl~~~~~~ki~DFGls~  157 (279)
T cd05057         127 E-------RRLVHRDLAARNVLVKTPNHVKITDFGLAK  157 (279)
T ss_pred             H-------CCCCCCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf             6-------896346576310336899928996066433


No 280
>cd06617 PKc_MKK3_6 Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threon
Probab=96.65  E-value=0.058  Score=32.30  Aligned_cols=141  Identities=16%  Similarity=0.221  Sum_probs=67.9

Q ss_pred             EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             100466812001799943-995-8999821669988999---99999999853267755510010267787522451557
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      ++.|..|.--+.|++... +|+ |.+|+........+..   .+.+.+  +  +-..+|.++.-.+ .  ..-.+..+.+
T Consensus         6 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~e~~~~--~--~~~~hp~iv~~~~-~--~~~~~~~~iv   78 (280)
T cd06617           6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDIS--M--RSSDCPYTVHFYG-A--LFREGDVWIC   78 (280)
T ss_pred             EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--H--HHCCCCCEEEEEE-E--EEECCEEEEE
T ss_conf             789722768299999987999799999989113867999999999999--9--8579998756999-9--9889989999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      +++++|.            ++..+-+.......++-        ....            .....+...+..+.+    +
T Consensus        79 mE~~~~~------------l~~~~~~~~~~~~~~~e--------~~~~------------~i~~qil~gl~ylH~----~  122 (280)
T cd06617          79 MEVMDTS------------LDKFYKKVYKKGLTIPE--------DILG------------KIAVSVVKALEYLHE----K  122 (280)
T ss_pred             EECCCCC------------HHHHHHHHHHCCCCCCH--------HHHH------------HHHHHHHHHHHHHHH----C
T ss_conf             9937999------------89999999864899989--------9999------------999999999999975----4


Q ss_pred             CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             7774440223464225627-9604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                        .|+||.|+.|.|||+++ +++. ++||+.|.
T Consensus       123 --~~IiHRDiKP~NILl~~~g~iK-l~DFGla~  152 (280)
T cd06617         123 --LSVIHRDVKPSNILINRNGQVK-LCDFGISG  152 (280)
T ss_pred             --CCEEECCCCHHHEEECCCCCEE-EEECCCCC
T ss_conf             --9988531768985677999999-98276766


No 281
>cd05050 PTKc_Musk Catalytic Domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=96.64  E-value=0.021  Score=35.21  Aligned_cols=163  Identities=19%  Similarity=0.227  Sum_probs=73.3

Q ss_pred             CEEEEEECCCCCEEEEEEEEE------CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             605310046681200179994------3995-8999821669988---99999999999853267755510010267787
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQT------SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t------~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
                      ++.-++.|..|.--+.|+.+.      +++. ..+|+.......+   ++..|+.+|..|..     |.+++-. |  ..
T Consensus         6 ~~~~~~~iG~G~fG~Vy~a~~~g~~~~~~~~~vAvK~l~~~~~~~~~~~f~~E~~il~~l~H-----pNIV~~~-g--~~   77 (288)
T cd05050           6 NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDH-----PNIVKLL-G--VC   77 (288)
T ss_pred             HEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EE
T ss_conf             90980398228781899999758645885759999998856797899999999999985799-----9883376-7--99


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             52245155786478870768998999999998643675306875433231124564576675200155227889999999
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC  172 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (316)
                      ...+..+.+++|++|..+...    +..  +.--..+....+....+........+.  ....     -.+...+..-+.
T Consensus        78 ~~~~~~~lv~Ey~~~g~L~~~----l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~-----l~i~~~ia~gl~  144 (288)
T cd05050          78 AVGKPMCLLFEYMAYGDLNEF----LRH--RSPRAQCSLSHSTSSARKCGLNPLPLS--CTEQ-----LCIAKQVAAGMA  144 (288)
T ss_pred             EECCEEEEEEEECCCCCHHHH----HHH--CCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHH-----HHHHHHHHHHHH
T ss_conf             669976999991689909999----985--285421000112210001457778889--9999-----999999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             88876521077744402234642256279604873162135
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+.+       +++||+|+.+.|||.+++...-|.||+.+.
T Consensus       145 yLH~-------~~ivHrDlKp~NiLl~~~~~~Kl~DFGls~  178 (288)
T cd05050         145 YLSE-------RKFVHRDLATRNCLVGENMVVKIADFGLSR  178 (288)
T ss_pred             HHHH-------CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             9863-------990526766066898799988860052540


No 282
>cd05053 PTKc_FGFR Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, 
Probab=96.62  E-value=0.049  Score=32.80  Aligned_cols=149  Identities=16%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             EECCCCCEEEEEEEEE-------CCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             0046681200179994-------399-589998216699889---99999999998532677555100102677875224
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-------SKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-------~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      +.|..|.--+.|+.+-       .++ ...+|+........+   +..|+++|..+.++    |.++.-. |  ...-.+
T Consensus        18 ~~LG~G~fG~Vyk~~~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~~l~~l~~H----pnIv~~~-g--~~~~~~   90 (294)
T cd05053          18 KPLGEGAFGQVVKAEAVGLPNRQNEETTVAVKMLKEDATEKDLSDLVSEMEVMKMIGKH----KNIINLL-G--CCTQGG   90 (294)
T ss_pred             CEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-E--EEEECC
T ss_conf             68930778299999984777757786799999988777979999999999999873489----8688787-8--980599


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHH
Q ss_conf             515578647887076899899999999864367530687543323112456457667520015522----7889999999
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED----LKKEIDHEFC  172 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~  172 (316)
                      ..+.+++|.+|.++..           .|   +.. +.... ..+.   ....    .....+...    ....+...+.
T Consensus        91 ~~~iv~Ey~~~GsL~~-----------~l---~~~-~~~~~-~~~~---~~~~----~~~~~l~~~~~~~~~~qia~gl~  147 (294)
T cd05053          91 PLYVVVEYAAHGNLRD-----------FL---RAR-RPPGE-YASS---DDPR----PPEETLTQKDLVSFAYQVARGME  147 (294)
T ss_pred             EEEEEEECCCCCCHHH-----------HH---HHC-CCCCC-CCCC---CCCC----CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8899998179994999-----------99---861-87520-0122---2233----43357799999999999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             88876521077744402234642256279604873162135
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+.+       +++||.|+.+.|||.+++...-|.||+.|.
T Consensus       148 yLH~-------~~IvHRDlKp~NILl~~~~~~Kl~DFGls~  181 (294)
T cd05053         148 YLAS-------KKCIHRDLAARNVLVTEGYVMKIADFGLAR  181 (294)
T ss_pred             HHHH-------CCCCCCCCCCCEEEECCCCEEEEEECCCCC
T ss_conf             9984-------899677677020788899949997578753


No 283
>cd05049 PTKc_Trk Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=96.62  E-value=0.031  Score=34.12  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             EEECCCCCEEEEEEEEE------CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             10046681200179994------3995-8999821669988---999999999998532677555100102677875224
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT------SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t------~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      .+.|..|.--+.|+-+.      .+++ ..+|++......+   ++..|+++|..|...     .+++-. |  +..-.+
T Consensus        10 ~~~iG~G~fG~Vy~g~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~~l~~l~Hp-----nIV~l~-g--~~~~~~   81 (280)
T cd05049          10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHE-----NIVKFY-G--VCTEGD   81 (280)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEE-E--EEEECC
T ss_conf             86991375869999998267548878899999989757868999999999999877998-----874078-8--997799


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      ..+.+++|++|.++..    .++.-+.     |.............+   .+...         -.....+...+..+.+
T Consensus        82 ~~~lV~Ey~~~GsL~~----~l~~~~~-----~~~~~~~~~~~~~~l---~~~~~---------~~i~~qia~gl~yLH~  140 (280)
T cd05049          82 PPIMVFEYMEHGDLNK----FLRSHGP-----DAAFLKSPDSPMGEL---TLSQL---------LQIAVQIASGMVYLAS  140 (280)
T ss_pred             EEEEEEECCCCCCHHH----HHHHCCC-----CCCCCCCCCCCCCCC---CHHHH---------HHHHHHHHHHHHHHHH
T ss_conf             7799998069991999----9987097-----510012355557777---99999---------9999999999998866


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             6521077744402234642256279604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                             ++++|.|+.+.|||++.+...-|-||+.|.
T Consensus       141 -------~~ivHrDlK~~NiLl~~~~~~Kl~DFGls~  170 (280)
T cd05049         141 -------QHFVHRDLATRNCLVGYDLVVKIGDFGMSR  170 (280)
T ss_pred             -------CCEECCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             -------893426657401798789888963235543


No 284
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=96.60  E-value=0.038  Score=33.51  Aligned_cols=155  Identities=14%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             CEEEEEECCCCCEEEEEEEEEC--CC----C-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             6053100466812001799943--99----5-899982166998---899999999999853267755510010267787
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQTS--KG----T-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t~--~~----~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
                      ++.-++.|..|.--+.|+-+..  .+    + ..+|...+....   +++..|+++|..|..     |.+++-. |  +.
T Consensus         6 ~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VaiK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g--~~   77 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQH-----PNIVCLL-G--VC   77 (283)
T ss_pred             HEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EE
T ss_conf             98983697158883899999837887606779999998832697899999999999985899-----8973188-9--99


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             5224515578647887076899899999999864367530687543323--11245645766752001552278899999
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKN--TLSPLNLKFLWAKCFDKVDEDLKKEIDHE  170 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  170 (316)
                      .-.+..+.+++|++|.++..           .| ..+....+......+  .....++....         .+...+...
T Consensus        78 ~~~~~~~lv~Ey~~~GsL~~-----------~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~i~~~ia~g  136 (283)
T cd05048          78 TKEQPTCMLFEYLAHGDLHE-----------FL-VRNSPHSDVGAESGDETVKSSLDCSDFL---------HIAIQIAAG  136 (283)
T ss_pred             EECCEEEEEEEECCCCCHHH-----------HH-HHCCCCCCCCCCCCCCCCCCCCCHHHHH---------HHHHHHHHH
T ss_conf             66886699999169990899-----------99-8618764211112333335779999999---------999999999


Q ss_pred             HHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             9988876521077744402234642256279604873162135
Q gi|254780795|r  171 FCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       171 l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +..+..       +++||+|+.+.|||.+++...-|.||+.+.
T Consensus       137 l~yLH~-------~~IvHrDlK~~NILl~~~~~~Ki~DFGla~  172 (283)
T cd05048         137 MEYLSS-------HHFVHRDLAARNCLVGEGLTVKISDFGLSR  172 (283)
T ss_pred             HHHHHH-------CCCCCCCCCCCEEEECCCCCEEEEEECCCC
T ss_conf             999986-------890777556175898899938998604750


No 285
>cd05090 PTKc_Ror1 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=96.56  E-value=0.053  Score=32.56  Aligned_cols=153  Identities=10%  Similarity=0.104  Sum_probs=73.5

Q ss_pred             CEEEEEECCCCCEEEEEEEEE-----CCCCEE-EEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             605310046681200179994-----399589-99821669988---999999999998532677555100102677875
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQT-----SKGTFI-LTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t-----~~~~yi-Lri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~   93 (316)
                      ++.-.+.|..|.--+.|+-..     +.++.| +|......+..   ++..|+++|..|..-+|     ++-. |  +..
T Consensus         6 ~~~~~~~IG~G~fG~Vykg~~~~~~~~~~~~VAiK~l~~~~~~~~~~~f~~E~~~l~~l~HpNI-----V~l~-g--~~~   77 (283)
T cd05090           6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNI-----VCLL-G--VVT   77 (283)
T ss_pred             HEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEE
T ss_conf             9299879704858699999994788858889999997887897899999999999986689896-----8599-9--998


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHH
Q ss_conf             2245155786478870768998999999998643675-3068754332311245645766752001552----2788999
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQ-KTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEID  168 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~-~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~  168 (316)
                      -.+..+.+++|++|.++..     .      |..-+. ...+.....            .......++.    .+...+.
T Consensus        78 ~~~~~~iv~Ey~~~G~L~~-----~------L~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~i~~qia  134 (283)
T cd05090          78 QEQPVCMLFEYLNQGDLHE-----F------LIMRSPHSDVGCSSDE------------DGTVKSSLDHGDFLHIAIQIA  134 (283)
T ss_pred             ECCEEEEEEEECCCCCHHH-----H------HHHCCCCCCCCCCCCC------------CCCCCCCCCHHHHHHHHHHHH
T ss_conf             8997799999459990899-----9------9750765433333222------------332135789999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             999988876521077744402234642256279604873162135
Q gi|254780795|r  169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..+..+.+       +++||+|+.+.|||.+.+...-|-||+.+.
T Consensus       135 ~gl~yLH~-------~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~  172 (283)
T cd05090         135 AGMEYLSS-------HFFVHKDLAARNILIGEQLHVKISDLGLSR  172 (283)
T ss_pred             HHHHHHHH-------CCEECCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             99999844-------985645048412768899989998166772


No 286
>cd05032 PTKc_InsR_like Catalytic Domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological 
Probab=96.52  E-value=0.071  Score=31.74  Aligned_cols=149  Identities=13%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             EEEEECCCCCEEEEEEEE-----E-CCC-CEEEEEECCCCCH-HHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             531004668120017999-----4-399-5899982166998-8999--9999999985326775551001026778752
Q gi|254780795|r   25 NSVQPIIHGVENSNFVIQ-----T-SKG-TFILTIYEKRMNE-KDLP--VFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        25 ~~~~~i~~G~~Ntny~v~-----t-~~~-~yiLri~e~~~~~-~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +-.+.|..|.--+.|+=.     . +.+ +..+|........ +...  .|+.+|..|...     .+++-. |  +...
T Consensus         9 ~i~~~iG~G~fG~Vy~g~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~f~~E~~il~~l~h~-----nIv~~~-g--~~~~   80 (277)
T cd05032           9 TLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCH-----HVVRLL-G--VVST   80 (277)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CEEEEE-E--EEEE
T ss_conf             9736992176709998886687657767499999975666978999999999999877998-----881586-7--8868


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      .+..+.+++|++|.++.           ..|.+.........     ......+...+         .....+...+..+
T Consensus        81 ~~~~~ivmEy~~~GsL~-----------~~l~~~~~~~~~~~-----~~~~l~~~~~~---------~i~~qia~gl~yL  135 (277)
T cd05032          81 GQPTLVIMELMARGDLK-----------SYLRSRRPEAENNP-----GLGPPTLQEFI---------QMAAEIADGMAYL  135 (277)
T ss_pred             CCEEEEEEECCCCCCHH-----------HHHHHHCCHHHCCC-----CCCCCCHHHHH---------HHHHHHHHHHHHH
T ss_conf             99889999847999289-----------99986164011136-----67998999999---------9999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             876521077744402234642256279604873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+       +++||+|+.+.|||++.+...-|.||+.|.
T Consensus       136 H~-------~~IiHrDlK~~NILl~~~~~~Ki~DFGls~  167 (277)
T cd05032         136 AA-------KKFVHRDLAARNCMVAEDLTVKIGDFGMAR  167 (277)
T ss_pred             HH-------CCCCCCCCCCCEEEECCCCCEEECCCCCCE
T ss_conf             86-------895447788774898799988973141000


No 287
>KOG1166 consensus
Probab=96.48  E-value=0.038  Score=33.47  Aligned_cols=51  Identities=37%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-------CCCEEEECCCCCC
Q ss_conf             52278899999998887652107774440223464225627-------9604873162135
Q gi|254780795|r  160 DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-------NKIMGLIDFYFSC  213 (316)
Q Consensus       160 ~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-------~~i~giIDF~~~~  213 (316)
                      +..+.-.+...+..+.+...   ..++||||+.|||.|...       ....-+|||+.+.
T Consensus       792 ~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si  849 (974)
T KOG1166         792 DEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI  849 (974)
T ss_pred             CCHHHHHHHHHHHHHHHHHH---HCCEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCE
T ss_conf             81002577999999999987---51631046786514751466788866546999626402


No 288
>KOG0603 consensus
Probab=96.44  E-value=0.0057  Score=38.84  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=27.2

Q ss_pred             CCEEECCCCCCCEEEC-C-CCCEEEECCCCCCCCHHH
Q ss_conf             7444022346422562-7-960487316213568000
Q gi|254780795|r  184 TGIIHADLFPDNVLFY-N-NKIMGLIDFYFSCNDFLM  218 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~-~-~~i~giIDF~~~~~~~~i  218 (316)
                      +|++|+||+|+|||+. . +.+- ++||++++.-..-
T Consensus       434 ~gvvhRDLkp~NIL~~~~~g~lr-ltyFG~a~~~~~~  469 (612)
T KOG0603         434 QGVVHRDLKPGNILLDGSAGHLR-LTYFGFWSELERS  469 (612)
T ss_pred             CCEEECCCCHHHEEECCCCCCEE-EEEECHHHHCCHH
T ss_conf             68653578833266327988579-9972003207644


No 289
>cd05071 PTKc_Src Catalytic Domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=96.43  E-value=0.081  Score=31.40  Aligned_cols=138  Identities=13%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             EEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             10046681200179994399-5899982166-998899999999999853267755510010267787522451557864
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .+.|..|.--+.|+.....+ +..+|.+... .+.+.+..|+.+|..|...+|     ++-. |-   ...+..+.+++|
T Consensus        11 ~~~iG~G~fg~Vy~g~~~~~~~VAiK~~~~~~~~~~~~~~Ei~~l~~l~H~nI-----v~~~-g~---~~~~~~~iv~Ey   81 (262)
T cd05071          11 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-----VQLY-AV---VSEEPIYIVTEY   81 (262)
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-----EEEE-EE---EECCCEEEEEEC
T ss_conf             68994076839999999999999999987367998999999999986899897-----6699-99---926964999981


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..              .|+....       ....   +...+         .....+...+..+.+       .
T Consensus        82 ~~~G~L~~--------------~l~~~~~-------~~~~---~~~~~---------~i~~~ia~gl~yLH~-------~  121 (262)
T cd05071          82 MSKGSLLD--------------FLKGEMG-------KYLR---LPQLV---------DMAAQIASGMAYVER-------M  121 (262)
T ss_pred             CCCCCHHH--------------HHHHCCC-------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------C
T ss_conf             79998999--------------9854558-------7899---99999---------999999999999864-------8


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++||+|+.+.|||++.+...-+.||+.|.
T Consensus       122 ~iiHrDLK~~NILl~~~~~~Kl~DFGls~  150 (262)
T cd05071         122 NYVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             CEEECEECCCCEEECCCCEEEECCCCCCE
T ss_conf             88724605151788799829981278764


No 290
>cd05040 PTKc_Ack_like Catalytic Domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=96.40  E-value=0.084  Score=31.28  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEEEE--ECCCCE---EEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             4668120017999--439958---9998216699---8899999999999853267755510010267787522451557
Q gi|254780795|r   30 IIHGVENSNFVIQ--TSKGTF---ILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        30 i~~G~~Ntny~v~--t~~~~y---iLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      |..|.--+.|+..  +..+++   .+|+......   ..++..|+.+|..|.     -|.+++-. |-   ...+..+.+
T Consensus         3 iG~G~fg~Vy~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~f~~E~~il~~l~-----HpnIv~l~-g~---~~~~~~~iv   73 (257)
T cd05040           3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLD-----HENLIRLY-GV---VLTHPLMMV   73 (257)
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEEEECHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-EE---EECCCEEEE
T ss_conf             9558887899999978999898999999881005458999999999998689-----98982088-99---973978999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      ++|.+|.++..              .||....+       ......   .         ......+...+..+..     
T Consensus        74 ~Ey~~~GsL~~--------------~l~~~~~~-------~~~~~~---~---------~~~~~qia~aL~yLH~-----  115 (257)
T cd05040          74 TELAPLGSLLD--------------RLRKDALG-------HFLIST---L---------CDYAVQIANGMRYLES-----  115 (257)
T ss_pred             EECCCCCCHHH--------------HHHHCCCC-------CCCHHH---H---------HHHHHHHHHHHHHHHH-----
T ss_conf             98688999999--------------99744788-------889999---9---------9999999999999852-----


Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                        ++++|+|+.++|||++.+...-|.||+.+.
T Consensus       116 --~~ivHrDlKp~NiLl~~~~~~Kl~DFG~a~  145 (257)
T cd05040         116 --KRFIHRDLAARNILLASDDKVKIGDFGLMR  145 (257)
T ss_pred             --CCCCCCCCCCCCEEECCCCCEEEEECHHHC
T ss_conf             --896457457120678689958981141110


No 291
>KOG0581 consensus
Probab=96.37  E-value=0.039  Score=33.42  Aligned_cols=29  Identities=34%  Similarity=0.536  Sum_probs=24.6

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             74440223464225627-9604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      +.+||.|..|.|+|++. ++|. +=||+-+.
T Consensus       198 ~~IIHRDIKPsNlLvNskGeVK-icDFGVS~  227 (364)
T KOG0581         198 RKIIHRDIKPSNLLVNSKGEVK-ICDFGVSG  227 (364)
T ss_pred             CCEEECCCCHHHEEECCCCCEE-ECCCCCCH
T ss_conf             5710057788785553799778-53455337


No 292
>cd05109 PTKc_HER2 Catalytic Domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=96.32  E-value=0.093  Score=31.00  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             EEEEEECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             0531004668120017999-43995-----89998216699889---999999999985326775551001026778752
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +..++-|..|.--+.|+-. ..+|+     ..+|+.........   +..|+.+|..|+     .|.+++-. |-.   .
T Consensus         9 l~~~k~iG~G~fG~Vy~g~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~il~~l~-----hpnIv~~~-g~~---~   79 (279)
T cd05109           9 LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVG-----SPYVCRLL-GIC---L   79 (279)
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEE-EEE---E
T ss_conf             98825980178919997899189988868999999884579899999999999998679-----99898099-999---9


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      .+....+++++++..+              +..++.....+        ..   ...         -.+...+...+..+
T Consensus        80 ~~~~~lv~e~~~~G~L--------------~~~l~~~~~~~--------~~---~~~---------~~i~~qia~gl~yL  125 (279)
T cd05109          80 TSTVQLVTQLMPYGCL--------------LDYVRENKDRI--------GS---QDL---------LNWCVQIAKGMSYL  125 (279)
T ss_pred             ECCEEEEEEECCCCCH--------------HHHHHHCCCCC--------CH---HHH---------HHHHHHHHHHHHHH
T ss_conf             6890799997889978--------------99998568999--------99---999---------99999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             876521077744402234642256279604873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+       .++||+|+.+.|||++.+.-.-|.||+.+.
T Consensus       126 H~-------~~IiHrDlKp~NILi~~~~~~Ki~DFGls~  157 (279)
T cd05109         126 EE-------VRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             HH-------CCEECCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf             85-------990137657310898899939997447761


No 293
>cd05063 PTKc_EphR_A2 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored 
Probab=96.30  E-value=0.096  Score=30.90  Aligned_cols=137  Identities=19%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             EECCCCCEEEEEEEEE-CCCC----EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             0046681200179994-3995----8999821669988---999999999998532677555100102677875224515
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKGT----FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~~----yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +-|..|.--+.|+... .+|+    ..+|.........   ++..|+++|..|...+|     ++- -|  +..-.+..+
T Consensus        11 ~~iG~G~fG~Vykg~~~~~g~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~nI-----v~~-~g--~~~~~~~~~   82 (268)
T cd05063          11 KVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNI-----IRL-EG--VVTKFKPAM   82 (268)
T ss_pred             EEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CCE-EE--EEEECCEEE
T ss_conf             6983278839999999889976689999994767798999999999999986689789-----735-07--998899889


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++...              |+..        ...+..   ...         ......+...+..+.+   
T Consensus        83 iv~Ey~~~G~L~~~--------------L~~~--------~~~~~~---~~~---------~~~~~~ia~gL~yLH~---  125 (268)
T cd05063          83 IITEYMENGALDKY--------------LRDH--------DGEFSS---YQL---------VGMLRGIAAGMKYLSD---  125 (268)
T ss_pred             EEEECCCCCCHHHH--------------HHHC--------CCCCCH---HHH---------HHHHHHHHHHHHHHHH---
T ss_conf             99982898979997--------------6402--------789999---999---------9999999999999832---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          .++||+|+.+.|||++.+...-|-||+.+.
T Consensus       126 ----~~iiHrDlK~~NILld~~~~~Kl~DFGls~  155 (268)
T cd05063         126 ----MNYVHRDLAARNILVNSNLECKVSDFGLSR  155 (268)
T ss_pred             ----CCEECCCCCCCEEEECCCCCEEECCCCCCE
T ss_conf             ----998755347550788899988982376554


No 294
>cd05055 PTKc_PDGFR Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=96.24  E-value=0.064  Score=32.04  Aligned_cols=139  Identities=16%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             EECCCCCEEEEEEEEEC----C---CCEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             00466812001799943----9---958999821669988---9999999999985326775551001026778752245
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS----K---GTFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~----~---~~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k   97 (316)
                      +.|..|.--+.|+-+..    .   .+..+|.........   .+-.|+++|..|.++    |.+++-. |  .....+.
T Consensus        41 ~~lG~G~fG~Vy~a~~~g~~~~~~~~~VAvK~l~~~~~~~~~~~f~~Ei~il~~L~~H----pNIV~l~-g--~~~~~~~  113 (302)
T cd05055          41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH----ENIVNLL-G--ACTIGGP  113 (302)
T ss_pred             CEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EEEECCE
T ss_conf             4981177719999899078887832799999957879979999999999999746799----9980899-9--9998999


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .+.+++|++|.++..              -||...       .....   +....         .....+...+..+.+ 
T Consensus       114 ~~iV~Ey~~~GsL~~--------------~L~~~~-------~~~l~---~~~~~---------~i~~qia~gl~yLH~-  159 (302)
T cd05055         114 ILVITEYCCYGDLLN--------------FLRRKR-------ESFLT---LEDLL---------SFSYQVAKGMAFLAS-  159 (302)
T ss_pred             EEEEEECCCCCCHHH--------------HHHHCC-------CCCCC---HHHHH---------HHHHHHHHHHHHHHH-
T ss_conf             999998689996899--------------997578-------88899---99999---------999999999999976-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             521077744402234642256279604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                            +++||.|+.+.|||++.+...-|.||+.|.
T Consensus       160 ------~~iiHRDLK~~NILl~~~~~~Ki~DFGla~  189 (302)
T cd05055         160 ------KNCIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             ------CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             ------894777465022336689957860257621


No 295
>cd05042 PTKc_Aatyk Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=96.19  E-value=0.11  Score=30.55  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             99999998887652107774440223464225627960487316213
Q gi|254780795|r  166 EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       166 ~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      .+...+..+.+       .++||+|+.+.|||++.+...-|-||+.+
T Consensus       108 ~ia~gl~yLH~-------~~ivHrDlK~~NiLl~~~~~~Ki~DFGla  147 (269)
T cd05042         108 EVASGLLWLHQ-------ADFIHSDLALRNCQLTADLSVKIGDYGLA  147 (269)
T ss_pred             HHHHHHHHHHH-------CCEEECCCCCCEEEECCCCCEEEEECCCC
T ss_conf             99999999975-------89542676540178889992999867577


No 296
>cd05080 PTKc_Tyk2_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=96.18  E-value=0.11  Score=30.53  Aligned_cols=140  Identities=17%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             EEEEEECCCCCEEEEEEEEE-----CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             05310046681200179994-----3995-8999821669988---9999999999985326775551001026778752
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-----SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-----~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +.-++.|..|.=-+.|+...     ..|+ ..+|.........   .+..|+++|..|..     |.+++-. |- ...-
T Consensus         6 l~~~k~iG~G~FG~V~~~~~~~~~~~~g~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~-g~-~~~~   78 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYH-----ENIVKYK-GC-CSEQ   78 (283)
T ss_pred             CEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE-EECC
T ss_conf             888179525778499980684137888929999998844597789999999999986799-----8770089-89-8328


Q ss_pred             CCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             245-1557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   95 CKK-PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        95 ~~k-~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      .++ .+.+++|++|.++...           |   ++          +.....   ...         .....+...+..
T Consensus        79 ~~~~~~lv~Ey~~~GsL~~~-----------l---~~----------~~l~~~---~~~---------~~~~qia~gl~y  122 (283)
T cd05080          79 GGKGLQLIMEYVPLGSLRDY-----------L---PK----------HKLNLA---QLL---------LFAQQICEGMAY  122 (283)
T ss_pred             CCCEEEEEEECCCCCCHHHH-----------H---HC----------CCCCHH---HHH---------HHHHHHHHHHHH
T ss_conf             99689999976799998886-----------3---01----------799999---999---------999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+       +++||.|+.+.|||++.+...-|.||+.|.
T Consensus       123 LH~-------~~iiHRDlK~~NiLl~~~~~~Ki~DFGlsr  155 (283)
T cd05080         123 LHS-------QHYIHRDLAARNVLLDNDRLVKIGDFGLAK  155 (283)
T ss_pred             HHC-------CCCCCCCCCCCEEEECCCCCEEEEECEEEE
T ss_conf             830-------991537567410788789978984222014


No 297
>cd05069 PTKc_Yes Catalytic Domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=96.18  E-value=0.11  Score=30.52  Aligned_cols=138  Identities=15%  Similarity=0.192  Sum_probs=75.7

Q ss_pred             EEECCCCCEEEEEEEEECC-CCEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             1004668120017999439-95899982166-998899999999999853267755510010267787522451557864
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-GTFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .+.|..|.--+.|+-+... .+..+|..... ...+.+..|+.+|..|+..+|     ++-. |-   ...+..+.+++|
T Consensus        11 ~~~IG~G~fG~V~~g~~~~~~~VAvK~~~~~~~~~~~f~~E~~~l~~l~HpnI-----v~~~-g~---~~~~~~~iv~Ey   81 (260)
T cd05069          11 DVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKL-----VPLY-AV---VSEEPIYIVTEF   81 (260)
T ss_pred             EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-----EEEE-EE---ECCCCEEEEEEC
T ss_conf             27981188869999998999899999987676888999999999986799888-----7674-67---736976999980


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++..           .|   +. ..+      .....   ...         -.+...+...+..+.+       .
T Consensus        82 ~~~g~L~~-----------~l---~~-~~~------~~l~~---~~~---------~~i~~qia~gl~yLH~-------~  121 (260)
T cd05069          82 MGKGSLLD-----------FL---KE-GDG------KYLKL---PQL---------VDMAAQIADGMAYIER-------M  121 (260)
T ss_pred             CCCCCHHH-----------HH---HH-CCC------CCCCH---HHH---------HHHHHHHHHHHHHHHH-------C
T ss_conf             79998899-----------99---73-888------86899---999---------9999999999999976-------9


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++||+|+.+.|||++++...-+.||+.|.
T Consensus       122 ~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  150 (260)
T cd05069         122 NYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             CEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             90346156372898799978982146525


No 298
>KOG0032 consensus
Probab=96.11  E-value=0.077  Score=31.53  Aligned_cols=144  Identities=19%  Similarity=0.323  Sum_probs=76.8

Q ss_pred             HHHCCCCCEEEEEECCCCCEEEEEEEEECC-C-CEEEEEECCCC-----CHHHHHHHHHHHHHHHHC--CCCCCCCCCCC
Q ss_conf             984899860531004668120017999439-9-58999821669-----988999999999998532--67755510010
Q gi|254780795|r   16 VQEYAIGQLNSVQPIIHGVENSNFVIQTSK-G-TFILTIYEKRM-----NEKDLPVFIELLHYISRN--KLPCPIPIPRN   86 (316)
Q Consensus        16 l~~y~lg~~~~~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~~-----~~~~l~~~~~ll~~L~~~--gipvP~pi~~~   86 (316)
                      -..|.+|     +.+..|---.+|...... | +|-.|+..++.     ....+.-|+..|++|+.+  -+..+....+.
T Consensus        34 ~~~Y~l~-----~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~  108 (382)
T KOG0032          34 KEKYELG-----RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDP  108 (382)
T ss_pred             CCCEEEE-----EEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC
T ss_conf             2126753-----35468973378997766899615899830321346311788999999998635799788761379716


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             26778752245155786478870768998999999998643675306875433231124564576675200155227889
Q gi|254780795|r   87 DGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKE  166 (316)
Q Consensus        87 ~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (316)
                      +         ....+++.++|..+-.       .+.+.    |     |.                    ..........
T Consensus       109 ~---------~~~lvmEL~~GGeLfd-------~i~~~----~-----~s--------------------E~da~~~~~~  143 (382)
T KOG0032         109 D---------SVYLVMELCEGGELFD-------RIVKK----H-----YS--------------------ERDAAGIIRQ  143 (382)
T ss_pred             C---------EEEEEEEECCCCHHHH-------HHHHC----C-----CC--------------------HHHHHHHHHH
T ss_conf             6---------0155543046725888-------89872----7-----76--------------------8998888898


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHH
Q ss_conf             99999988876521077744402234642256279-----6048731621356800
Q gi|254780795|r  167 IDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFL  217 (316)
Q Consensus       167 l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~  217 (316)
                      +...+..+..       .|++|.|+-|.|+|+...     ++. ++||+.+.....
T Consensus       144 il~av~~lH~-------~gvvHrDlKpEN~L~~~~~~~~~~ik-~~DFGla~~~~~  191 (382)
T KOG0032         144 ILEAVKYLHS-------LGVVHRDLKPENLLLASKDEGSGRIK-LIDFGLAKFIKP  191 (382)
T ss_pred             HHHHHHHHHH-------CCEEECCCCHHHCEECCCCCCCCCEE-EECCCCCCCCCC
T ss_conf             8999999986-------79655147876701102546777566-521687631688


No 299
>cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=95.97  E-value=0.14  Score=29.90  Aligned_cols=142  Identities=18%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             EEEEEECCCCCEEEEEEEEE-----CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             05310046681200179994-----3995-8999821669988---9999999999985326775551001026778752
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-----SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-----~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +..++.|..|.=-+.|+..-     ..|+ +.+|.........   ++..|+++|..|...     .+++-. |- ...-
T Consensus         6 ~k~~~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~Hp-----NIv~~~-g~-~~~~   78 (284)
T cd05079           6 LKRIRDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGEHIADLKKEIEILRNLYHE-----NIVKYK-GI-CTEE   78 (284)
T ss_pred             CEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-EE-EECC
T ss_conf             8644596137083999858864427779399999984212867899999999999867998-----884086-57-8337


Q ss_pred             CCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             245-1557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   95 CKK-PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        95 ~~k-~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      .++ .+.+++|++|.++..           .|   ++..        +......   ..         .....+...++.
T Consensus        79 ~~~~~~lVmEy~~~GsL~~-----------~l---~~~~--------~~l~~~~---~~---------~~~~qia~gl~y  124 (284)
T cd05079          79 GGNGIKLIMEFLPSGSLKE-----------YL---PRNK--------NKINLKQ---LL---------KYAVQICKGMDY  124 (284)
T ss_pred             CCCEEEEEEEECCCCCHHH-----------HH---HHCC--------CCCCHHH---HH---------HHHHHHHHHHHH
T ss_conf             9977999999389994899-----------98---6346--------8999999---99---------999999999998


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.       .+++||+|+.+.|||.+.+...-|-||+.+.
T Consensus       125 LH-------~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~  157 (284)
T cd05079         125 LG-------SRQYVHRDLAARNVLVENERMVKIGDFGLTK  157 (284)
T ss_pred             HH-------HCCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             70-------3983647776223898799978997366654


No 300
>cd07876 STKc_JNK2 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes
Probab=95.97  E-value=0.017  Score=35.71  Aligned_cols=146  Identities=16%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCH
Q ss_conf             99848998605310046681200179994-3995-899982166-998---8999999999998532677-555100102
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRND   87 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~   87 (316)
                      ++++|.+     ++.|..|.--+.|+..- ..|+ +.+|+.... .+.   ..+-.|+.+|..|...+|. +-.....  
T Consensus        19 vl~rY~i-----~~~IG~G~fG~V~~a~d~~tg~~VAIK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~~~f~~--   91 (359)
T cd07876          19 VLKRYQQ-----LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTP--   91 (359)
T ss_pred             HHHCEEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--
T ss_conf             1336388-----159721508699999988999899999989101497999999999999986799698828999941--


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             67787522451557864788707689989999999986436753068754332311245645766752001552278899
Q gi|254780795|r   88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI  167 (316)
Q Consensus        88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l  167 (316)
                      ...+... +..+.++++++|.-        + +.      +|.   .++.        ....            .....+
T Consensus        92 ~~~~~~~-~~~ylvmE~~~~~L--------~-~~------i~~---~l~~--------~~~~------------~i~~qi  132 (359)
T cd07876          92 QKSLEEF-QDVYLVMELMDANL--------C-QV------IHM---ELDH--------ERMS------------YLLYQM  132 (359)
T ss_pred             CCCCCCC-CEEEEEEECCCCCH--------H-HH------HHC---CCCH--------HHHH------------HHHHHH
T ss_conf             6742126-60799996079988--------9-99------852---6999--------9999------------999999


Q ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             9999988876521077744402234642256279604873162135
Q gi|254780795|r  168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ...+..+.       ..|+||.|+.|.|||++.+...-++||+.|.
T Consensus       133 l~gL~ylH-------~~gIiHRDIKP~NILl~~~g~iKL~DFGlAr  171 (359)
T cd07876         133 LCGIKHLH-------SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  171 (359)
T ss_pred             HHHHHHHH-------HCCEEECCCCHHHEEECCCCCEEECCCCCCC
T ss_conf             99999998-------6892305786687698789977623534030


No 301
>KOG2269 consensus
Probab=95.87  E-value=0.043  Score=33.17  Aligned_cols=76  Identities=28%  Similarity=0.281  Sum_probs=43.8

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC--CCHHHC-----CHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHCCC-
Q ss_conf             44402234642256279604873162135--680001-----9899998643116888787---889999988764188-
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC--NDFLMY-----DLSICINAWCFDENNTYNP---SRGFSILNGYNKVRK-  253 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~--~~~~i~-----DLAi~i~~~c~~~~~~~d~---~~~~~~l~gY~~vrp-  253 (316)
                      -++|+|+--.|+||..+++. +||--.+.  ..|...     |..-.++.  |...|.-+.   .+.-.++.|-+-+.+ 
T Consensus       404 ~LVHADlSEyN~Lw~~gKvw-~IDVsQsvep~HP~~LeFL~RDc~Ni~~F--F~r~G~pn~~t~~qLFn~itgLn~tadn  480 (531)
T KOG2269         404 LLVHADLSEYNLLWTPGKVW-VIDVSQSVEPSHPRSLEFLTRDCQNIITF--FTRIGTPNLPTYVQLFNLITGLNMTADN  480 (531)
T ss_pred             HEEECCHHHHHHEECCCCEE-EEECHHCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             51113455541312278169-99610015889961459999887789999--9844887753499999997325667882


Q ss_pred             --CCHHHHHHHH
Q ss_conf             --9989999999
Q gi|254780795|r  254 --ISENELQSLP  263 (316)
Q Consensus       254 --Ls~~E~~~l~  263 (316)
                        +-..|+.++-
T Consensus       481 ~~~~~~E~~~lE  492 (531)
T KOG2269         481 DLLVQVEQFSLE  492 (531)
T ss_pred             HHHHHHHHHHHH
T ss_conf             443145665453


No 302
>cd05597 STKc_DMPK_like STKc_DMPK_like: Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational 
Probab=95.86  E-value=0.023  Score=34.97  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             EECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             004668120017999439-9-5899982166--99889---999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      +.|..|.--+.|++...+ | .|.+|+..+.  ....+   +..+.++|..+.     .|.+++-..   ..+-.+..+.
T Consensus         7 ~~IG~G~fG~V~~a~~k~tg~~~AiKii~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~yl   78 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGD-----RRWITNLHY---AFQDENNLYL   78 (331)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEEE
T ss_conf             89732738299999998999899999983789227889999999999998579-----998747999---9997999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|..+.           ..+.+..   ..++        .....            .....+...+..+.+    
T Consensus        79 vmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~a~------------~~~~qi~~aL~ylH~----  120 (331)
T cd05597          79 VMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYLAEMVLAIDSVHQ----  120 (331)
T ss_pred             EEEECCCCCHH-----------HHHHHHC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             99813797468-----------8998606---7899--------99999------------999999999999997----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf             07774440223464225627-960487316213
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS  212 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~  212 (316)
                         +|+||.|+.|.|||++. +.+. ++||+.|
T Consensus       121 ---~~IiHRDlKPeNILl~~~g~iK-L~DFG~a  149 (331)
T cd05597         121 ---LGYVHRDIKPDNVLLDKNGHIR-LADFGSC  149 (331)
T ss_pred             ---CCEECCCCCCCCCCCCCCCCEE-EEECCHH
T ss_conf             ---7906154677663346899889-9841122


No 303
>cd05047 PTKc_Tie Catalytic Domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=95.84  E-value=0.16  Score=29.53  Aligned_cols=145  Identities=15%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             CCCEEEEEEEEECC-C-CE--EEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             68120017999439-9-58--99982166998---899999999999853267755510010267787522451557864
Q gi|254780795|r   32 HGVENSNFVIQTSK-G-TF--ILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        32 ~G~~Ntny~v~t~~-~-~y--iLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      .|.--+.|+..... | ++  .++........   .++..|+++|..|.++    |.++.-. |  .....+..+.+++|
T Consensus         5 ~G~fG~Vy~~~~~~~g~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~H----pnIv~l~-g--~~~~~~~~~lv~Ey   77 (270)
T cd05047           5 EGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH----PNIINLL-G--ACEHRGYLYLAIEY   77 (270)
T ss_pred             CCCCCEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EECCCCEEEEEEEC
T ss_conf             179968999999389979999999978444826899999999999963489----9888899-8--98529989999980


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             788707689989999999986436753068754332311245645766752001552----2788999999988876521
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~  180 (316)
                      .+|.++..           .+-+- .....-+..       .    ........++.    .....+...+..+.+    
T Consensus        78 ~~~G~L~~-----------~l~~~-~~~~~~~~~-------~----~~~~~~~~l~~~~~~~~~~~ia~gl~yLH~----  130 (270)
T cd05047          78 APHGNLLD-----------FLRKS-RVLETDPAF-------A----IANSTASTLSSQQLLHFAADVARGMDYLSQ----  130 (270)
T ss_pred             CCCCCHHH-----------HHHHC-CCCCCCCHH-------H----HCCCCCCCCCHHHHHHHHHHHHHHHHHHHC----
T ss_conf             79996999-----------99854-655446202-------1----114655778999999999999999998710----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +++||.|+.+.|||++.+...-|-||+.|.
T Consensus       131 ---~~iiHRDlK~~NILl~~~~~~Kl~DFGla~  160 (270)
T cd05047         131 ---KQFIHRDLAARNILVGENYVAKIADFGLSR  160 (270)
T ss_pred             ---CCCCCCCCCHHEEEECCCCCEEEEECCCCC
T ss_conf             ---992537677202899999978995668886


No 304
>cd05110 PTKc_HER4 Catalytic Domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=95.82  E-value=0.16  Score=29.48  Aligned_cols=140  Identities=17%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             EEEEEECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             0531004668120017999-43995-----8999821669988---9999999999985326775551001026778752
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      +..++-|..|.--+.|+-. ..+|+     +.+|+........   ++..|+.+|..|..     |.+++-. |-   ..
T Consensus         9 l~~~k~LG~G~FG~Vy~a~~~~~g~~~~~~vAvK~l~~~~~~~~~~~f~~E~~il~~l~H-----pnIV~l~-g~---~~   79 (303)
T cd05110           9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDH-----PHLVRLL-GV---CL   79 (303)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-EE---EE
T ss_conf             988259820789499958990899888789999997744487899999999999986899-----8989198-99---98


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             24515578647887076899899999999864367530687543323112456457667520015522788999999988
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL  174 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  174 (316)
                      ....+.+++|++|..+.              --+|.....++        ..   ..         -.....+...+..+
T Consensus        80 ~~~~~lV~E~~~~G~L~--------------~~l~~~~~~l~--------~~---~~---------~~~~~qia~gl~yL  125 (303)
T cd05110          80 SPTIQLVTQLMPHGCLL--------------DYVHEHKDNIG--------SQ---LL---------LNWCVQIAKGMMYL  125 (303)
T ss_pred             ECCEEEEEEECCCCCHH--------------HHHHHHCCCCC--------HH---HH---------HHHHHHHHHHHHHH
T ss_conf             58859999976898788--------------87775168889--------99---99---------99999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             876521077744402234642256279604873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+       +++||.|+.+.|||++.+...-|.||+.|.
T Consensus       126 H~-------~~IiHRDLKp~NILl~~~~~vKI~DFGlar  157 (303)
T cd05110         126 EE-------RRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             HH-------CCCCCCCCCCCCEEECCCCCEEECCCCCCE
T ss_conf             66-------895346653104798899988981264525


No 305
>cd05086 PTKc_Aatyk2 Catalytic Domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=95.79  E-value=0.16  Score=29.39  Aligned_cols=29  Identities=17%  Similarity=0.301  Sum_probs=24.3

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             74440223464225627960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      .+++|+|+.+.|||++.+...-|-||+-+
T Consensus       118 ~~ivHrDLK~~NiLl~~~~~~Ki~DFGla  146 (268)
T cd05086         118 HNFLHSDLALRNCFLTSDLTVKVGDYGIG  146 (268)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCC
T ss_conf             89716777720189989997999877887


No 306
>cd05062 PTKc_IGF-1R Catalytic Domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=95.71  E-value=0.18  Score=29.21  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=24.8

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++.+...-|.||+.+.
T Consensus       138 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGla~  167 (277)
T cd05062         138 NKFVHRDLAARNCMVAEDFTVKIGDFGMTR  167 (277)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             894536566131788899929983052550


No 307
>cd05065 PTKc_EphR_B Catalytic Domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=95.71  E-value=0.18  Score=29.20  Aligned_cols=137  Identities=18%  Similarity=0.225  Sum_probs=69.4

Q ss_pred             EECCCCCEEEEEEEEEC-CCC----EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             00466812001799943-995----8999821669988---999999999998532677555100102677875224515
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KGT----FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~~----yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      +-|..|.--+.|+-... .|+    ..+|......+..   ++-.|+++|..|+..+|     ++- -|-  ....+..+
T Consensus        10 ~~iG~G~fG~Vy~g~~~~~g~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNI-----v~~-~g~--~~~~~~~~   81 (269)
T cd05065          10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNI-----IHL-EGV--VTKSRPVM   81 (269)
T ss_pred             EEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEE-EEE--EEECCEEE
T ss_conf             8992177839999999379965079999998845797999999999999986899788-----719-999--98899889


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++...              ++....        .+.   +....         .+...+...+..+.+   
T Consensus        82 lv~Ey~~~GsL~~~--------------l~~~~~--------~~~---~~~~~---------~~~~~ia~gl~yLH~---  124 (269)
T cd05065          82 IITEFMENGALDSF--------------LRQNDG--------QFT---VIQLV---------GMLRGIAAGMKYLSE---  124 (269)
T ss_pred             EEEEECCCCCHHHH--------------HHHCCC--------CCC---HHHHH---------HHHHHHHHHHHHHHH---
T ss_conf             99991899918999--------------973679--------999---99999---------999999999999866---


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                          .++||+|+.+.|||.+.+...-+.||+.+.
T Consensus       125 ----~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~  154 (269)
T cd05065         125 ----MNYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (269)
T ss_pred             ----CCEECCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             ----987416677030667799969983353567


No 308
>KOG0595 consensus
Probab=95.70  E-value=0.12  Score=30.20  Aligned_cols=137  Identities=20%  Similarity=0.257  Sum_probs=71.9

Q ss_pred             EECCCCCEEEEEEEEE-CCCCEE-EEEECCC-CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             0046681200179994-399589-9982166-99---8899999999999853267755510010267787522451557
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-SKGTFI-LTIYEKR-MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-~~~~yi-Lri~e~~-~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      +.|..|.--+.|.=.- +++..| .|-..+. .+   .+.|..|+.+|..|..     |.+|.-.+   +....+..+.|
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H-----~nIV~l~d---~~~~~~~i~lV   87 (429)
T KOG0595          16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKH-----PNIVRLLD---CIEDDDFIYLV   87 (429)
T ss_pred             HHCCCCCEEEEEEEEECCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEECCCEEEEE
T ss_conf             02067612799986761578468754002420279999999999999985588-----55535778---88649869999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86478870768998999999998643675306875433231124564576675200155227889999999888765210
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN  181 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  181 (316)
                      |+|.+|..+..    .+...|    +++               ...            .......|...++.+.+     
T Consensus        88 MEyC~gGDLs~----yi~~~~----~l~---------------e~t------------~r~Fm~QLA~alq~L~~-----  127 (429)
T KOG0595          88 MEYCNGGDLSD----YIRRRG----RLP---------------EAT------------ARHFMQQLASALQFLHE-----  127 (429)
T ss_pred             EEECCCCCHHH----HHHHCC----CCC---------------HHH------------HHHHHHHHHHHHHHHHH-----
T ss_conf             87578888899----998727----898---------------899------------99999999999999987-----


Q ss_pred             CCCCEEECCCCCCCEEECCC------CCEEEECCCCCCC
Q ss_conf             77744402234642256279------6048731621356
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNN------KIMGLIDFYFSCN  214 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~------~i~giIDF~~~~~  214 (316)
                        +++||-|+.|.|+|...+      -+.-|=||++|.+
T Consensus       128 --~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~  164 (429)
T KOG0595         128 --NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARF  164 (429)
T ss_pred             --CCEEECCCCCCEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf             --7901046785437713677777775578604431211


No 309
>cd05051 PTKc_DDR Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=95.63  E-value=0.19  Score=29.01  Aligned_cols=127  Identities=18%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8999821669988---9999999999985326775551001026778752245155786478870768998999999998
Q gi|254780795|r   48 FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSM  124 (316)
Q Consensus        48 yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~  124 (316)
                      ..+|......+..   ++..|+.+|..|...+     +++-. |  +...++..+.+++|++|.++..           .
T Consensus        49 VAvK~l~~~~~~~~~~~f~~Ei~il~~l~Hpn-----Iv~~~-g--~~~~~~~~~lV~Ey~~~G~L~~-----------~  109 (296)
T cd05051          49 VAVKKLRPDASDNAREDFLKEVKILSRLSDPN-----IARLL-G--VCTQDPPLCMIMEYMENGDLNQ-----------F  109 (296)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC-----CCCEE-E--EEEECCEEEEEEEECCCCCHHH-----------H
T ss_conf             99999787689789999999999998689948-----88798-9--9988998899999068997899-----------9


Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf             64367530687543323112456457667520015522788999999988876521077744402234642256279604
Q gi|254780795|r  125 LASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIM  204 (316)
Q Consensus       125 La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~  204 (316)
                      |-+ |.............+   .+....         .+...+...+.++.+       +++||+|+.+.|||++.+...
T Consensus       110 l~~-~~~~~~~~~~~~~~l---~~~~~~---------~i~~qia~gl~yLh~-------~~iiHrDlK~~NiLl~~~~~~  169 (296)
T cd05051         110 LQK-HVAETSGLACNSKTL---SFSTLL---------YMATQIASGMKYLES-------LNFVHRDLATRNCLVGKNYTI  169 (296)
T ss_pred             HHH-CCCCCCCCCCCCCCC---CHHHHH---------HHHHHHHHHHHHHHH-------CCEECCCCCCCEEEECCCCCE
T ss_conf             986-356543200135778---999999---------999999999999977-------993447567265998899989


Q ss_pred             EEECCCCCC
Q ss_conf             873162135
Q gi|254780795|r  205 GLIDFYFSC  213 (316)
Q Consensus       205 giIDF~~~~  213 (316)
                      -|.||+.|.
T Consensus       170 Ki~DFGlsr  178 (296)
T cd05051         170 KIADFGMSR  178 (296)
T ss_pred             EEEECCCCC
T ss_conf             998656773


No 310
>cd05044 PTKc_c-ros Catalytic Domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=95.61  E-value=0.19  Score=28.95  Aligned_cols=124  Identities=17%  Similarity=0.238  Sum_probs=59.6

Q ss_pred             CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             589998216699889---99999999998532677555100102677875224515578647887076899899999999
Q gi|254780795|r   47 TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGS  123 (316)
Q Consensus        47 ~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~  123 (316)
                      ++.+|.........+   +-.|+.+|..|..     |.+++-. |  ....++..+.+++|++|.++..           
T Consensus        28 ~VAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~-g--~~~~~~~~~lvmE~~~~GsL~~-----------   88 (270)
T cd05044          28 RVAVKTLRKGATDQEKKEFLKEAHLMSNFNH-----PNILKLL-G--VCLLNEPQYLILELMEGGDLLS-----------   88 (270)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE-E--EEEECCEEEEEEECCCCCCHHH-----------
T ss_conf             9999998866897999999999999985899-----8988198-9--9998998899998468986999-----------


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC--
Q ss_conf             864367530687543323112456457667520015522788999999988876521077744402234642256279--
Q gi|254780795|r  124 MLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN--  201 (316)
Q Consensus       124 ~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~--  201 (316)
                         .|+.. +..... ....   .+....         .+...+..-+..+.+       +++||+|+.+.|||++.+  
T Consensus        89 ---~l~~~-~~~~~~-~~~l---~~~~~~---------~i~~~ia~gl~yLH~-------~~ivHrDlKp~NILl~~~~~  144 (270)
T cd05044          89 ---YLRGA-RVTRFG-PPLL---TLSELL---------DICLDVAKGCVYLER-------MHFIHRDLAARNCLVSEKTY  144 (270)
T ss_pred             ---HHHHC-CCCCCC-CCCC---CHHHHH---------HHHHHHHHHHHHHHH-------CCCCCCCCCCCEEEECCCCC
T ss_conf             ---98631-335577-7667---999999---------999999999999997-------89516777744179735777


Q ss_pred             ----CCEEEECCCCCC
Q ss_conf             ----604873162135
Q gi|254780795|r  202 ----KIMGLIDFYFSC  213 (316)
Q Consensus       202 ----~i~giIDF~~~~  213 (316)
                          .+.-|.||+.+.
T Consensus       145 ~~~~~~vKl~DFGla~  160 (270)
T cd05044         145 SDADRVVKIGDFGLAR  160 (270)
T ss_pred             CCCCCCEEEEECCCCC
T ss_conf             7777727981447733


No 311
>cd06629 STKc_MAPKKK_Bck1_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressio
Probab=95.54  E-value=0.032  Score=34.00  Aligned_cols=136  Identities=18%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             CCCCEEEEEEEE-ECCCC-EEEEEECCC------CCH------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             668120017999-43995-899982166------998------8999999999998532677555100102677875224
Q gi|254780795|r   31 IHGVENSNFVIQ-TSKGT-FILTIYEKR------MNE------KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        31 ~~G~~Ntny~v~-t~~~~-yiLri~e~~------~~~------~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      ..|.--+.|+.. +..|+ |.+|..+..      ...      ..+..|+++|..|.     -|.+++-.+   +..-.+
T Consensus        10 G~G~fg~V~~a~~~~tg~~vAvK~i~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----HpnIv~~~~---~~~~~~   81 (272)
T cd06629          10 GKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLD-----HLNIVQYLG---FETTEE   81 (272)
T ss_pred             ECCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECC
T ss_conf             017083999999889998999999710102121157888999999999999998689-----988865999---995099


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      ..+.+++|++|..+..     .      +   +.. ..+        ......            .....+...+..+.+
T Consensus        82 ~~~ivmEy~~~g~L~~-----~------l---~~~-~~l--------~e~~~~------------~~~~qll~gl~yLH~  126 (272)
T cd06629          82 YLSIFLEYVPGGSIGS-----C------L---RTY-GRF--------EEQLVR------------FFTEQVLEGLAYLHS  126 (272)
T ss_pred             EEEEEEEECCCCCHHH-----H------H---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH
T ss_conf             8999999039787899-----9------9---865-999--------999999------------999999999999998


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCH
Q ss_conf             6521077744402234642256279604873162135680
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF  216 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~  216 (316)
                             +++||.|+.|.|||++.+...-+.||+.|....
T Consensus       127 -------~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  159 (272)
T cd06629         127 -------KGILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             -------CCCCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf             -------796178787211799899989994378771557


No 312
>KOG0616 consensus
Probab=95.47  E-value=0.17  Score=29.24  Aligned_cols=146  Identities=16%  Similarity=0.339  Sum_probs=69.7

Q ss_pred             CCCCCEEEEEECCCCCEEEEEEEEECCC-C-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             8998605310046681200179994399-5-899982166--99889999999999985326775551001026778752
Q gi|254780795|r   19 YAIGQLNSVQPIIHGVENSNFVIQTSKG-T-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        19 y~lg~~~~~~~i~~G~~Ntny~v~t~~~-~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      |+|.+...++-+..|.=-+.-+|....+ . |.+|+-.+.  +.-.+.+--++--.-|+.  +..|-+++-     +.+.
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~~~yYAmKvL~k~~vVklKQveH~~nEk~vL~~--v~~PFlv~l-----~~t~  113 (355)
T KOG0616          41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKA--VSHPFLVKL-----YGTF  113 (355)
T ss_pred             CCHHHHEEEEEECCCCCCEEEEEEECCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEE-----EEEE
T ss_conf             434442001344047642589998717884652223177877879999977618989754--048737788-----7864


Q ss_pred             --CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             --245155786478870768998999999998643675306875433231124564576675200155227889999999
Q gi|254780795|r   95 --CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC  172 (316)
Q Consensus        95 --~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (316)
                        .+..+.|++|++|-              ++..-+++ ...|+.+.        ...            ..+++.-.++
T Consensus       114 kd~~~lymvmeyv~GG--------------ElFS~Lrk-~~rF~e~~--------arF------------YAAeivlAle  158 (355)
T KOG0616         114 KDNSNLYMVMEYVPGG--------------ELFSYLRK-SGRFSEPH--------ARF------------YAAEIVLALE  158 (355)
T ss_pred             CCCCEEEEEEECCCCC--------------HHHHHHHH-CCCCCCHH--------HHH------------HHHHHHHHHH
T ss_conf             1377789998337874--------------08999975-16888546--------778------------8999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             88876521077744402234642256279604873162135
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+.+       .++|..|+.|.|+|.+.+.-.-|.||++|-
T Consensus       159 ylH~-------~~iiYRDLKPENiLlD~~G~iKitDFGFAK  192 (355)
T KOG0616         159 YLHS-------LDIIYRDLKPENLLLDQNGHIKITDFGFAK  192 (355)
T ss_pred             HHHH-------CCEEECCCCHHHEEECCCCCEEEEECCCEE
T ss_conf             9874-------673643688777454467867887436348


No 313
>cd05056 PTKc_FAK Catalytic Domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=95.44  E-value=0.045  Score=33.02  Aligned_cols=135  Identities=14%  Similarity=0.108  Sum_probs=66.1

Q ss_pred             ECCCCCEEEEEEEEE--CCCC---EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             046681200179994--3995---8999821669988---9999999999985326775551001026778752245155
Q gi|254780795|r   29 PIIHGVENSNFVIQT--SKGT---FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t--~~~~---yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      .|..|.--+.|+-.-  ..++   ..+++.....+..   .+..|+.+|..|..     |.+++-. |-   ..++..+.
T Consensus        13 ~iG~G~fG~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g~---~~~~~~~i   83 (270)
T cd05056          13 CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDH-----PHIVKLI-GV---ITENPVWI   83 (270)
T ss_pred             EEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-EE---EEECCEEE
T ss_conf             994077879999999868980899999996601798999999999999986899-----8988499-99---97498799


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++.           ..|   .+.  .      .....   ...         ......+...+..+.+    
T Consensus        84 vmE~~~~G~L~-----------~~l---~~~--~------~~l~~---~~~---------~~~~~qia~gl~ylH~----  125 (270)
T cd05056          84 VMELAPLGELR-----------SYL---QVN--K------YSLDL---ASL---------ILYSYQLSTALAYLES----  125 (270)
T ss_pred             EEEECCCCCHH-----------HHH---HHC--C------CCCCH---HHH---------HHHHHHHHHHHHHHHH----
T ss_conf             99924998899-----------999---866--8------99999---999---------9999999999999974----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         +++||+|+.+.|||++.+...-|.||+.|.
T Consensus       126 ---~~iiHrDlKp~NiLl~~~~~vKl~DFGls~  155 (270)
T cd05056         126 ---KRFVHRDIAARNVLVSSPDCVKLGDFGLSR  155 (270)
T ss_pred             ---CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             ---996357578232304799978999568886


No 314
>cd05061 PTKc_InsR Catalytic Domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=95.41  E-value=0.22  Score=28.51  Aligned_cols=148  Identities=12%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             EEEECCCCCEEEEEEEEECC-------CCEEEEEECCCCC-HHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             31004668120017999439-------9589998216699-889--9999999999853267755510010267787522
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSK-------GTFILTIYEKRMN-EKD--LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~-------~~yiLri~e~~~~-~~~--l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
                      -.+.|..|.--+.|+-...+       .++.+|...+... .+.  ...|+.+|..|...     .+++-. |  +..-.
T Consensus        10 l~~~iG~G~fG~Vykg~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~f~~E~~~l~~l~h~-----nIv~l~-g--~~~~~   81 (288)
T cd05061          10 LLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-----HVVRLL-G--VVSKG   81 (288)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-E--EEEEC
T ss_conf             833980276729999895477678637089999978655867899999999999867999-----887599-9--99989


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
                      +..+.+++|++|.++..           .|-++.......+. +    ....+...+         .+...+...+..+.
T Consensus        82 ~~~~ivmE~~~~G~L~~-----------~l~~~~~~~~~~~~-~----~~~~~~~~~---------~~~~qia~gl~yLH  136 (288)
T cd05061          82 QPTLVVMELMAHGDLKS-----------YLRSLRPEAENNPG-R----PPPTLQEMI---------QMAAEIADGMAYLN  136 (288)
T ss_pred             CEEEEEEEECCCCCHHH-----------HHHHHCCCCCCCCC-C----CCHHHHHHH---------HHHHHHHHHHHHHH
T ss_conf             96799999058994999-----------99872641014667-8----865499999---------99999999999986


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             76521077744402234642256279604873162135
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +       +++||.|+.+.|||++++...-|.||+.|.
T Consensus       137 ~-------~~IiHRDLKp~NILl~~~~~vKl~DFGls~  167 (288)
T cd05061         137 A-------KKFVHRDLAARNCMVAHDFTVKIGDFGMTR  167 (288)
T ss_pred             H-------CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             1-------995547668784788999968995566750


No 315
>KOG0610 consensus
Probab=95.40  E-value=0.19  Score=29.00  Aligned_cols=137  Identities=23%  Similarity=0.326  Sum_probs=63.8

Q ss_pred             EEECCCCCEEEEEEEEECCC--CEEEEEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CC
Q ss_conf             10046681200179994399--5899982166-----998899999999999853267755510010267787522--45
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSKG--TFILTIYEKR-----MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC--KK   97 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~~--~yiLri~e~~-----~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~--~k   97 (316)
                      ++.+..|..-+.|+++....  -|.+|+..+.     -.......|-++|.-|..--+  |.        .+..++  .-
T Consensus        82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFl--PT--------LYa~fet~~~  151 (459)
T KOG0610          82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFL--PT--------LYASFETDKY  151 (459)
T ss_pred             HHHCCCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CH--------HHHEEECCCE
T ss_conf             9980899850699999668984478887248988666677888889999972699860--01--------1111304651


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      .|.+|+|.+|..                  ||...+.-+..+-   .......            ..+++.-+++.+.. 
T Consensus       152 ~cl~meyCpGGd------------------L~~LrqkQp~~~f---se~~aRF------------YaAEvl~ALEYLHm-  197 (459)
T KOG0610         152 SCLVMEYCPGGD------------------LHSLRQKQPGKRF---SESAARF------------YAAEVLLALEYLHM-  197 (459)
T ss_pred             EEEEEECCCCCC------------------HHHHHHHCCCCCC---CHHHHHH------------HHHHHHHHHHHHHH-
T ss_conf             699982489952------------------8899863788865---6236789------------99999999999975-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             52107774440223464225627-96048731621356
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                            .|+|=.||.|.|||+.+ +.|. +.|||-+..
T Consensus       198 ------lGivYRDLKPENILvredGHIM-LsDFDLS~~  228 (459)
T KOG0610         198 ------LGIVYRDLKPENILVREDGHIM-LSDFDLSLR  228 (459)
T ss_pred             ------HCEEECCCCCCEEEEECCCCEE-EEECCCCCC
T ss_conf             ------1623214784226872278478-640310344


No 316
>cd07857 STKc_MPK1 The catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape
Probab=95.34  E-value=0.032  Score=33.95  Aligned_cols=29  Identities=28%  Similarity=0.558  Sum_probs=24.8

Q ss_pred             CCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             744402234642256279-604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                      .|+||.|+.|.|||++++ ++. ++||+.|.
T Consensus       124 ~~IiHRDlKPeNILl~~~~~vK-l~DFGla~  153 (332)
T cd07857         124 ANVLHRDLKPGNLLVNADCELK-ICDFGLAR  153 (332)
T ss_pred             CCCEECCCCHHHEEECCCCCEE-EEECCCCC
T ss_conf             9842125778996887899877-60425111


No 317
>KOG0593 consensus
Probab=95.33  E-value=0.03  Score=34.19  Aligned_cols=29  Identities=38%  Similarity=0.652  Sum_probs=25.1

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..||.|..|.|||+..+.++-+=||++|.
T Consensus       121 n~IHRDIKPENILit~~gvvKLCDFGFAR  149 (396)
T KOG0593         121 NCIHRDIKPENILITQNGVVKLCDFGFAR  149 (396)
T ss_pred             CEECCCCCHHHEEEECCCCEEECCCHHHH
T ss_conf             80104677333677237827860303567


No 318
>cd05095 PTKc_DDR2 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=95.25  E-value=0.25  Score=28.20  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++.+...-|-||+.|.
T Consensus       149 ~~ivHrDlK~~NILl~~~~~~Ki~DFGls~  178 (296)
T cd05095         149 LNFVHRDLATRNCLVGKNYTIKIADFGMSR  178 (296)
T ss_pred             CCEECCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             987757566133798799989998453551


No 319
>pfam10009 DUF2252 Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=95.17  E-value=0.016  Score=35.96  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=37.1

Q ss_pred             HHCCCCCEEECCCCCCCEEE--CC-CC-CEEEECCCCCCCCHHHCCHHHHHHHHHH-CCCCCCCHH----HHHHHHHHHH
Q ss_conf             21077744402234642256--27-96-0487316213568000198999986431-168887878----8999998876
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLF--YN-NK-IMGLIDFYFSCNDFLMYDLSICINAWCF-DENNTYNPS----RGFSILNGYN  249 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~--~~-~~-i~giIDF~~~~~~~~i~DLAi~i~~~c~-~~~~~~d~~----~~~~~l~gY~  249 (316)
                      |..-|..+|+||+|..|.=.  +. ++ +-+|=|||+++.+++.+||--...+... -....+..+    .+.+++++|.
T Consensus        36 ~~~~~~v~icGD~Hl~NFG~~~s~eg~lvFdiNDFDEa~~gp~ewDlkRLa~S~~laa~~~gl~~~~~~~~v~~~~~~Y~  115 (383)
T pfam10009        36 PPTGPRVWICGDCHLENFGLFASPEGRLVFDINDFDEALPGPFEWDLKRLAASLVLAARENGLSEKDARRLVRAFARSYR  115 (383)
T ss_pred             CCCCCCEEEECCCHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             87678546863511641577638898677568876534548729999999999999999869898999999999999999


Q ss_pred             HC
Q ss_conf             41
Q gi|254780795|r  250 KV  251 (316)
Q Consensus       250 ~v  251 (316)
                      ..
T Consensus       116 ~~  117 (383)
T pfam10009       116 ER  117 (383)
T ss_pred             HH
T ss_conf             99


No 320
>cd05096 PTKc_DDR1 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=95.16  E-value=0.27  Score=28.02  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=25.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++++...-|-||+.|.
T Consensus       157 ~~iiHrDLK~~NILl~~~~~~Kl~DFGlsr  186 (304)
T cd05096         157 LNFVHRDLATRNCLVGENLTIKIADFGMSR  186 (304)
T ss_pred             CCEEECCCCHHCEEECCCCCEEEECCCCCE
T ss_conf             998827566520688899989995150550


No 321
>cd06630 STKc_MEKK1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regul
Probab=95.14  E-value=0.063  Score=32.08  Aligned_cols=134  Identities=18%  Similarity=0.233  Sum_probs=69.3

Q ss_pred             CCCCCEEEEEEEEE-CCCC-EEEEEECC-C-CCH------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             46681200179994-3995-89998216-6-998------8999999999998532677555100102677875224515
Q gi|254780795|r   30 IIHGVENSNFVIQT-SKGT-FILTIYEK-R-MNE------KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA   99 (316)
Q Consensus        30 i~~G~~Ntny~v~t-~~~~-yiLri~e~-~-~~~------~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~   99 (316)
                      |..|.--+.|++.. .+|+ |.+|+... + ...      +.+..|+.+|..|.     -|.+++-.+   ...-.+..+
T Consensus         8 iG~G~fg~Vy~~~~~~~g~~~AiK~i~~~~~~~~~~~~~~~~~~~Ei~il~~l~-----HpnIv~~~~---~~~~~~~~~   79 (268)
T cd06630           8 LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLN-----HPHIIRMLG---ATCEDSHFN   79 (268)
T ss_pred             EECCCCCEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEE
T ss_conf             512748499999988999899999981321643554999999999999998689-----999941247---999899999


Q ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57864788707689989999999986436753068754332311245645766752001552278899999998887652
Q gi|254780795|r  100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      .+++|++|.++..     .      +   +.. ..++        .....            .....+...++.+.+   
T Consensus        80 ivmEy~~gg~L~~-----~------l---~~~-~~~~--------e~~~~------------~~~~qi~~gl~ylH~---  121 (268)
T cd06630          80 LFVEWMAGGSVSH-----L------L---SKY-GAFK--------EAVII------------NYTEQLLRGLSYLHE---  121 (268)
T ss_pred             EEEECCCCCCHHH-----H------H---HHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH---
T ss_conf             9999349897999-----9------9---874-9999--------99999------------999999999999997---


Q ss_pred             HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC
Q ss_conf             1077744402234642256279-604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~  213 (316)
                          +++||.|+.|.|||++.+ ...-+.||+.|.
T Consensus       122 ----~~IiHRDiKp~NiLl~~~g~~vKl~DFG~a~  152 (268)
T cd06630         122 ----NQIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             ----CCCEECCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf             ----8926334665449993899979998789870


No 322
>cd05111 PTK_HER3 Pseudokinase Domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=95.13  E-value=0.27  Score=27.96  Aligned_cols=141  Identities=14%  Similarity=0.183  Sum_probs=68.9

Q ss_pred             CEEEEEECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCHHHHHH---HHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             60531004668120017999-43995-----89998216699889999---99999998532677555100102677875
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNEKDLPV---FIELLHYISRNKLPCPIPIPRNDGKLYGF   93 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~~~l~~---~~~ll~~L~~~gipvP~pi~~~~G~~~~~   93 (316)
                      ++..++.|..|.=-+.|+-. ..+|+     ..+|..+...+.+....   ++..|..|..     |.+++-. |  +. 
T Consensus         8 dl~~~~~lG~G~FG~Vykg~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~H-----pnIv~l~-g--~~-   78 (279)
T cd05111           8 ELRKLKVLGSGVFGTVHKGFWIPEGDSIKIPVAIKTIQDRSGRQTFTEITDHMLAMGSLDH-----AYIVRLL-G--IC-   78 (279)
T ss_pred             HCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE-E--EE-
T ss_conf             9988369812779199989993799889899999992665557999999999999983899-----8889099-9--99-


Q ss_pred             HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             22451557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      .....+.+++|.++.++.              ..|+.....        ......   +         .....+...+..
T Consensus        79 ~~~~~~iv~e~~~~GsL~--------------~~l~~~~~~--------~~~~~~---~---------~~~~qia~gl~y  124 (279)
T cd05111          79 PGASLQLVTQLSPLGSLL--------------DHVRQHRGS--------LDPQRL---L---------NWCVQIAKGMYY  124 (279)
T ss_pred             ECCEEEEEEEECCCCCHH--------------HHHHHCCCC--------CCHHHH---H---------HHHHHHHHHHHH
T ss_conf             389079999958999578--------------988645799--------999999---9---------999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+       +++||+|+.+.|||++.+...-|-||+.+.
T Consensus       125 LH~-------~~iiHrDlK~~NiLl~~~~~~Ki~DFGla~  157 (279)
T cd05111         125 LEE-------HRMVHRNLAARNILLKSDSQVQIADFGVAD  157 (279)
T ss_pred             HHH-------CCCCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf             976-------894446667200668789819998556743


No 323
>cd05092 PTKc_TrkA Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=95.11  E-value=0.28  Score=27.92  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             EECCCCCEEEEEEEEEC------CC-CEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             00466812001799943------99-589998216699--8899999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS------KG-TFILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~------~~-~yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +.|..|.--+.|+.+..      ++ .+.+|..+....  ..++..|+++|..|...+|     ++-. |  +..-.+..
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~~~-g--~~~~~~~~   82 (280)
T cd05092          11 WELGEGAFGKVFLAECANLLPEQDKMLVAVKALKEANESARQDFQREAELLTVLQHQHI-----VRFY-G--VCTEGEPL   82 (280)
T ss_pred             EEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEEECCEE
T ss_conf             79545768689999986775587677999999785686899999999999986789986-----7088-8--99239989


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|..+..    .++.-|. -+++-...+..+   ...+   .+..    .     -.+...+...+..+.+  
T Consensus        83 ~lvmEy~~~G~L~~----~l~~~~~-~~~~~~~~~~~~---~~~l---~~~~----~-----~~i~~qia~gl~yLHs--  140 (280)
T cd05092          83 AMVFEYMRHGDLNR----FLRSHGP-DAKILDEGKDVA---PGQL---TLPQ----M-----LHIAAQIASGMVYLAS--  140 (280)
T ss_pred             EEEEEECCCCCHHH----HHHHHCC-CCCCCHHCCCCC---CCCC---CHHH----H-----HHHHHHHHHHHHHHHH--
T ss_conf             99998069990899----9987087-410000002466---6777---9999----9-----9999999999999840--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           .++||+|+.|.|||++.+...-+.||+.+.
T Consensus       141 -----~~iiHRDlKp~NiLl~~~~~~Kl~DFGls~  170 (280)
T cd05092         141 -----LHFVHRDLATRNCLVGEGLVVKIGDFGMSR  170 (280)
T ss_pred             -----CCCCCCCCCCCEEEECCCCCEEECCCEECC
T ss_conf             -----997368667142898799948975263033


No 324
>KOG4250 consensus
Probab=95.03  E-value=0.21  Score=28.64  Aligned_cols=29  Identities=38%  Similarity=0.638  Sum_probs=16.6

Q ss_pred             CCEEECCCCCCCEEEC----CCCCEEEECCCCC
Q ss_conf             7444022346422562----7960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFY----NNKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~----~~~i~giIDF~~~  212 (316)
                      .|+||.|+.|+||+.-    +..|.-++||+.|
T Consensus       139 n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250         139 NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             CCCEECCCCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf             692104688770788636887247764135443


No 325
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=95.02  E-value=0.046  Score=32.96  Aligned_cols=133  Identities=12%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEEEEE--CCCCEEEEEECCCC-C--HH------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             46681200179994--39958999821669-9--88------99999999999853267755510010267787522451
Q gi|254780795|r   30 IIHGVENSNFVIQT--SKGTFILTIYEKRM-N--EK------DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        30 i~~G~~Ntny~v~t--~~~~yiLri~e~~~-~--~~------~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      |..|.--+.|+..-  ++..+.+|+..... .  .+      .+-.|+.+|..|...+|     ++..+   +..-.+..
T Consensus        16 iG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~~~~~~rEi~il~~l~H~nI-----v~~~~---~~~~~~~~   87 (325)
T PTZ00024         16 LGEGSYGKVYKAYDTILKKEVAIKKMKINKISNYIDDCGINFVLLREIKIMKEIKHKNI-----MSALD---LYCEKDYI   87 (325)
T ss_pred             EECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-----CEEEE---EEEECCEE
T ss_conf             72075849999998899989999998734442177776668999999999986799898-----93989---99968956


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.++++++|.            +.+.+.+      .      ........            ......+...+..+.+  
T Consensus        88 ~iv~E~~~~~------------L~~~l~~------~------~~l~~~~~------------~~i~~qil~gl~~lH~--  129 (325)
T PTZ00024         88 NLVMEIMDYD------------LAKIINR------K------IFLTDSQK------------KCILLQILNGLNVLHK--  129 (325)
T ss_pred             EEEEECCCCC------------HHHHHHH------C------CCCCHHHH------------HHHHHHHHHHHHHHHH--
T ss_conf             9999547878------------8999971------6------99999999------------9999999999999998--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           .|+||.|+.|.|||++.+...-++||+.|.
T Consensus       130 -----~~IiHRDlKPeNILl~~~~~vKi~DFGla~  159 (325)
T PTZ00024        130 -----YYFMHRDLSPANIFINKKGEVKIADFGLCS  159 (325)
T ss_pred             -----CCEEECCCCHHHEEECCCCCEEECCCCCCC
T ss_conf             -----897406677899478899998987677772


No 326
>cd05094 PTKc_TrkC Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=94.97  E-value=0.017  Score=35.83  Aligned_cols=148  Identities=18%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             EECCCCCEEEEEEEE------ECCCC-EEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             004668120017999------43995-8999821669--98899999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQ------TSKGT-FILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~------t~~~~-yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +.|..|.--+.|+.+      +.++. ..+|......  ...++..|+++|..|...     .+++-. |  +..-.+..
T Consensus        11 ~~iG~G~FG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~il~~l~Hp-----nIV~l~-g--~~~~~~~~   82 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHE-----HIVKFY-G--VCGDGDPL   82 (291)
T ss_pred             EEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEE-E--EEEECCEE
T ss_conf             498137686999999816763777779999997874557899999999999858998-----877388-8--98239988


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHH
Q ss_conf             557864788707689989999999986436753068754332311245645766752001552----2788999999988
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEIDHEFCFL  174 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~  174 (316)
                      +.+++|++|.++..           .|- -|.. ......       ....   .+....+..    .+...+...+..+
T Consensus        83 ~lv~Ey~~~G~L~~-----------~l~-~~~~-~~~~~~-------~~~p---~~~~~~l~~~~~~~i~~qia~gl~yL  139 (291)
T cd05094          83 IMVFEYMKHGDLNK-----------FLR-AHGP-DAMILV-------DGQP---RQAKGELGLSQMLHIASQIASGMVYL  139 (291)
T ss_pred             EEEEEECCCCCHHH-----------HHH-HCCC-CCCCCC-------CCCC---HHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999169992999-----------998-6197-410012-------3442---01047789999999999999999999


Q ss_pred             HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             876521077744402234642256279604873162135
Q gi|254780795|r  175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+       +++||.|+.+.|||++++...-|.||+.|.
T Consensus       140 H~-------~~iiHRDLKp~NILl~~~~~~Ki~DFGlsr  171 (291)
T cd05094         140 AS-------QHFVHRDLATRNCLVGANLLVKIGDFGMSR  171 (291)
T ss_pred             HH-------CCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             75-------892656776405998799978994465654


No 327
>KOG0608 consensus
Probab=94.85  E-value=0.053  Score=32.56  Aligned_cols=30  Identities=40%  Similarity=0.645  Sum_probs=25.4

Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             774440223464225627-9604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      ..|+||.|+.|||||++. +.|. +-||+.|.
T Consensus       747 kmGFIHRDiKPDNILIDrdGHIK-LTDFGLCT  777 (1034)
T KOG0608         747 KMGFIHRDIKPDNILIDRDGHIK-LTDFGLCT  777 (1034)
T ss_pred             HCCCEECCCCCCCEEECCCCCEE-EEECCCCC
T ss_conf             50412225675546773678456-30024202


No 328
>cd05066 PTKc_EphR_A Catalytic Domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=94.83  E-value=0.095  Score=30.94  Aligned_cols=136  Identities=18%  Similarity=0.200  Sum_probs=68.1

Q ss_pred             ECCCCCEEEEEEEEE--CCCC---EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             046681200179994--3995---8999821669988---9999999999985326775551001026778752245155
Q gi|254780795|r   29 PIIHGVENSNFVIQT--SKGT---FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t--~~~~---yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      -|..|.--+.|+-..  +.++   ..+|......+..   ++-.|+++|..|..     |.+++-. |  +..-.+..+.
T Consensus        11 ~iG~G~fG~Vy~~~~~~~~~~~~~VAiK~l~~~~~~~~~~~f~~E~~il~~l~H-----pnIv~l~-g--~~~~~~~~~l   82 (267)
T cd05066          11 VIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLGEASIMGQFDH-----PNIIHLE-G--VVTKSKPVMI   82 (267)
T ss_pred             EEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EECCCCEEEE
T ss_conf             994178959999999779976799999997866697999999999999986899-----8882499-9--9844998999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++..     .         ++.....+        ..   ...         ......+...+..+.+    
T Consensus        83 v~Ey~~~G~L~~-----~---------l~~~~~~~--------~~---~~~---------~~~~~~ia~gl~yLh~----  124 (267)
T cd05066          83 VTEYMENGSLDA-----F---------LRKHDGQF--------TV---IQL---------VGMLRGIASGMKYLSD----  124 (267)
T ss_pred             EEECCCCCCHHH-----H---------HHHCCCCC--------CH---HHH---------HHHHHHHHHHHHHHHH----
T ss_conf             998379997899-----9---------97368999--------99---999---------9999999999999966----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .++||.|+.+.|||++.+...-|-||+.+.
T Consensus       125 ---~~iiHRDlK~~NiLl~~~~~~Ki~DFGls~  154 (267)
T cd05066         125 ---MGYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (267)
T ss_pred             ---CCEECCCCCCCEEEECCCCCEEECCCCCCE
T ss_conf             ---985546676254898899988985476656


No 329
>cd05108 PTKc_EGFR Catalytic Domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=94.83  E-value=0.099  Score=30.83  Aligned_cols=136  Identities=15%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             EECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             004668120017999-43995-----899982166998---899999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +-|..|.--+.|+.. ..+|+     ..+|........   .++-.|+.+|..|..     |.+++-. |-.   ..+..
T Consensus        13 ~~LG~G~fG~Vykg~~~~~g~~~~~~VAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIV~l~-g~~---~~~~~   83 (316)
T cd05108          13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN-----PHVCRLL-GIC---LTSTV   83 (316)
T ss_pred             EEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EEE---EECCE
T ss_conf             08711878499968994799888689999996644587899999999999986799-----8885799-999---74885


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      ..++++++|..+.              -.++.....+        ...   ..+         .....+...+..+.+  
T Consensus        84 ~lv~e~~~~G~L~--------------~~l~~~~~~l--------~~~---~~~---------~~~~qia~gL~yLH~--  127 (316)
T cd05108          84 QLITQLMPFGCLL--------------DYVREHKDNI--------GSQ---YLL---------NWCVQIAKGMNYLED--  127 (316)
T ss_pred             EEEEEECCCCCHH--------------HHHHHHCCCC--------CHH---HHH---------HHHHHHHHHHHHHHH--
T ss_conf             8999977998889--------------9997614787--------999---999---------999999999999997--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +++||.|+.+.|||++.+...-|.||+.|.
T Consensus       128 -----~~IIHRDLKp~NILl~~~~~vKI~DFGlak  157 (316)
T cd05108         128 -----RRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (316)
T ss_pred             -----CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             -----793215666111668899968996547656


No 330
>cd05064 PTKc_EphR_A10 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=94.68  E-value=0.11  Score=30.50  Aligned_cols=30  Identities=20%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .++||+|+.+.|||++.+...-|.||+-+.
T Consensus       126 ~~iiHrDlK~~NiLl~~~~~~Kl~DFG~~~  155 (266)
T cd05064         126 MGYVHKGLAAHKVLVNSDLVCKISGFRRLQ  155 (266)
T ss_pred             CCEEECCCCHHHEEECCCCCEEECCCCCCC
T ss_conf             895506766550898899978988773644


No 331
>cd05091 PTKc_Ror2 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=94.66  E-value=0.36  Score=27.16  Aligned_cols=153  Identities=12%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             CEEEEEECCCCCEEEEEEEEE------CCCCE-EEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             605310046681200179994------39958-99982166998---899999999999853267755510010267787
Q gi|254780795|r   23 QLNSVQPIIHGVENSNFVIQT------SKGTF-ILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG   92 (316)
Q Consensus        23 ~~~~~~~i~~G~~Ntny~v~t------~~~~y-iLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~   92 (316)
                      ++.-.+.|..|.--+.|+-.-      ++++. .+|........   +++..++.+|..|+..+     +++-. |-  .
T Consensus         6 ~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VAiK~l~~~~~~~~~~~f~~E~~~l~~l~HpN-----Iv~~~-G~--~   77 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRSRLQHPN-----IVCLL-GV--V   77 (283)
T ss_pred             HEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC-----CCCEE-EE--E
T ss_conf             9799989715888499999987887787776999999781158689999999999998189989-----88398-99--9


Q ss_pred             HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHH
Q ss_conf             522451557864788707689989999999986436753068754332311245645766752001552----2788999
Q gi|254780795|r   93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEID  168 (316)
Q Consensus        93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~  168 (316)
                      .-.+..+.+++|.+|..+..     .-..    -..|.-...-    ...          ......+..    .+...+.
T Consensus        78 ~~~~~~~lv~e~~~~G~L~~-----~L~~----~~~~~~~~~~----~~~----------~~~~~~l~~~~~~~i~~qia  134 (283)
T cd05091          78 TKEQPMSMIFSYSSHGDLHE-----FLVM----RSPHSDVGST----DDD----------KTVKSTLEPADFLHIVTQIA  134 (283)
T ss_pred             EECCEEEEEEEECCCCCHHH-----HHHH----HCCCCCCCCC----CCC----------CHHCCCCCHHHHHHHHHHHH
T ss_conf             76890299999068991899-----9976----0654433444----321----------01014789999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             999988876521077744402234642256279604873162135
Q gi|254780795|r  169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..+..+.+       ++++|+|+.+.|||.+++...-|.||+.+.
T Consensus       135 ~gl~yLH~-------~~ivHrDlK~~NILl~~~~~vKl~DFGls~  172 (283)
T cd05091         135 AGMEFLSS-------HHVVHKDLAARNVLVFDKLNVKISDLGLFR  172 (283)
T ss_pred             HHHHHHHH-------CCCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             99999976-------992678676024898799968997547761


No 332
>cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including 
Probab=94.63  E-value=0.37  Score=27.13  Aligned_cols=30  Identities=30%  Similarity=0.376  Sum_probs=25.4

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++++...-|-||+.|.
T Consensus       148 ~~iiHrDLK~~NiLl~~~~~~Ki~DFGlar  177 (295)
T cd05097         148 LNFVHRDLATRNCLVGNHYTIKIADFGMSR  177 (295)
T ss_pred             CCEECCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             985526667040888899978996442552


No 333
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=94.63  E-value=0.1  Score=30.73  Aligned_cols=134  Identities=18%  Similarity=0.261  Sum_probs=74.2

Q ss_pred             CCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             89986053100466812001799943995899982166998899999999999853267755510010267787522451
Q gi|254780795|r   19 YAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        19 y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      ++...+...+-+..|..--.|...-..++-++++=+.......|.-+.+.++-|+..|+ .|++..-          |+.
T Consensus        19 ~~~~~~~v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~-~p~vy~y----------g~~   87 (201)
T COG2112          19 EGKYELRVEKELAKGTTSVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGV-TPEVYFY----------GED   87 (201)
T ss_pred             CCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEE----------CHH
T ss_conf             34224445666434644479985316854899995278632457888999998611577-8659983----------103


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +..|+|++|.++......     |               .+      ..               +...++..  +.    
T Consensus        88 ~i~me~i~G~~L~~~~~~-----~---------------~r------k~---------------l~~vlE~a--~~----  120 (201)
T COG2112          88 FIRMEYIDGRPLGKLEIG-----G---------------DR------KH---------------LLRVLEKA--YK----  120 (201)
T ss_pred             HHHHHHHCCCCHHHHHHC-----C---------------CH------HH---------------HHHHHHHH--HH----
T ss_conf             410012058546566511-----1---------------68------99---------------99999999--98----


Q ss_pred             HHCCCCCEEECCCCC--CCEEECCCCCEEEECCCCCC
Q ss_conf             210777444022346--42256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFP--DNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~--~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+  ..|+-|+-++.  .||++.++++. |||||-|.
T Consensus       121 LD--~~GI~H~El~~~~k~vlv~~~~~~-iIDFd~At  154 (201)
T COG2112         121 LD--RLGIEHGELSRPWKNVLVNDRDVY-IIDFDSAT  154 (201)
T ss_pred             HH--HHCCCHHHHCCCCEEEEECCCCEE-EEECCCHH
T ss_conf             88--755663554487326882699479-99825132


No 334
>KOG1035 consensus
Probab=94.60  E-value=0.056  Score=32.42  Aligned_cols=31  Identities=35%  Similarity=0.618  Sum_probs=26.6

Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             774440223464225627-96048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      -+|+||.|+.|.||+.+. ++|. |.||+.|+.
T Consensus       715 ~~giIHRDLKP~NIFLd~~~~VK-IGDFGLAt~  746 (1351)
T KOG1035         715 DQGIIHRDLKPRNIFLDSRNSVK-IGDFGLATD  746 (1351)
T ss_pred             HCCEEECCCCCCEEEECCCCCEE-ECCCCCCHH
T ss_conf             37434136775426775889800-166322033


No 335
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=94.58  E-value=0.38  Score=27.04  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++.+...-|-||+.+.
T Consensus       119 ~~iiHrDLK~~NiLl~~~~~vKl~DFGls~  148 (269)
T cd05087         119 HNYVHSDLALRNCLLTSDLTVKIGDYGLSH  148 (269)
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf             995646455030658689838995557875


No 336
>cd05115 PTKc_Zap-70 Catalytic Domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=94.57  E-value=0.11  Score=30.62  Aligned_cols=116  Identities=20%  Similarity=0.349  Sum_probs=60.7

Q ss_pred             EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             899982166998---89999999999985326775551001026778752245155786478870768998999999998
Q gi|254780795|r   48 FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSM  124 (316)
Q Consensus        48 yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~  124 (316)
                      ..+|......+.   +++..|+++|..|..     |.+++-- |-  . ..+..+.+++|++|.++...           
T Consensus        25 VavK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIV~l~-g~--~-~~~~~~ivmE~~~~G~L~~~-----------   84 (257)
T cd05115          25 VAIKVLKNENEKSVRDEMMREAEIMHQLDN-----PYIVRMI-GV--C-EAEALMLVMEMASGGPLNKF-----------   84 (257)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--E-ECCCEEEEEEECCCCCHHHH-----------
T ss_conf             999998813797899999999999985899-----6880699-99--9-31977999991799878999-----------


Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf             64367530687543323112456457667520015522788999999988876521077744402234642256279604
Q gi|254780795|r  125 LASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIM  204 (316)
Q Consensus       125 La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~  204 (316)
                      |   +.  +      +....   +...+         .+...+...+..+.+       +++||+|+.+.|+|.+++...
T Consensus        85 l---~~--~------~~~l~---~~~~~---------~i~~qia~gl~yLH~-------~~iiHrDLK~~NiLl~~~~~~  134 (257)
T cd05115          85 L---SG--K------KDEIT---VSNVV---------ELMHQVSMGMKYLEG-------KNFVHRDLAARNVLLVNQHYA  134 (257)
T ss_pred             H---HC--C------CCCCC---HHHHH---------HHHHHHHHHHHHHHH-------CCCCCCCCCCCEEEECCCCCE
T ss_conf             8---32--6------78999---99999---------999999999999986-------896567676210788589978


Q ss_pred             EEECCCCCC
Q ss_conf             873162135
Q gi|254780795|r  205 GLIDFYFSC  213 (316)
Q Consensus       205 giIDF~~~~  213 (316)
                      -|.||+.+.
T Consensus       135 Ki~DFGls~  143 (257)
T cd05115         135 KISDFGLSK  143 (257)
T ss_pred             EEEECCCCE
T ss_conf             999768854


No 337
>cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=94.57  E-value=0.025  Score=34.66  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=24.9

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|.|+.+.|||.+++...-|.||+.|.
T Consensus       132 ~~iiHRDlKp~NiLl~~~~~~kl~DFGls~  161 (273)
T cd05074         132 KNFIHRDLAARNCMLNENMTVCVADFGLSK  161 (273)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             893625565655899899978998468762


No 338
>cd05093 PTKc_TrkB Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly 
Probab=94.47  E-value=0.026  Score=34.57  Aligned_cols=149  Identities=18%  Similarity=0.230  Sum_probs=70.7

Q ss_pred             EECCCCCEEEEEEEEE-----CCCC--EEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             0046681200179994-----3995--89998216699--8899999999999853267755510010267787522451
Q gi|254780795|r   28 QPIIHGVENSNFVIQT-----SKGT--FILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t-----~~~~--yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      +.|..|.--+.|+.+.     ++.+  ..+|.......  ..++..|+++|..|..     |.+++-. |  ...-.+..
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~il~~l~H-----pnIV~~~-g--~~~~~~~~   82 (288)
T cd05093          11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQH-----EHIVKFY-G--VCVEGDPL   82 (288)
T ss_pred             EEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEE
T ss_conf             59804768299999980577687667999999587685899999999999986799-----8877387-8--99679989


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+++|++|.++..    .++.-|...-.+   ..+   .++..+.   +...         ......+...+..+.+  
T Consensus        83 ~iv~Ey~~~G~L~~----~l~~~~~~~~~~---~~~---~~~~~l~---~~~~---------~~i~~qia~gl~yLH~--  138 (288)
T cd05093          83 IMVFEYMKHGDLNK----FLRAHGPDAVLM---AEG---NRPAELT---QSQM---------LHIAQQIAAGMVYLAS--  138 (288)
T ss_pred             EEEEECCCCCCHHH----HHHHCCCCCCCC---CCC---CCCCCCC---HHHH---------HHHHHHHHHHHHHHHH--
T ss_conf             99998069990899----998708641000---135---7766689---9999---------9999999999999844--


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             21077744402234642256279604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           +++||.|+.+.|||++.+...-|.||+.|.
T Consensus       139 -----~~iiHRDLKp~NILl~~~~~~Ki~DFGls~  168 (288)
T cd05093         139 -----QHFVHRDLATRNCLVGENLLVKIGDFGMSR  168 (288)
T ss_pred             -----CCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             -----894678777132899999939982155573


No 339
>cd05099 PTKc_FGFR4 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=94.47  E-value=0.4  Score=26.88  Aligned_cols=30  Identities=33%  Similarity=0.486  Sum_probs=25.3

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++.+...-|.||+.|.
T Consensus       153 ~~iiHRDLK~~NILl~~~~~~Ki~DFGlar  182 (314)
T cd05099         153 RRCIHRDLAARNVLVTEDNVMKIADFGLAR  182 (314)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             899688767221628799958980242445


No 340
>cd05058 PTKc_Met_Ron Catalytic Domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=94.40  E-value=0.41  Score=26.79  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=24.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|+|+.+.|||.+++...-|-||+.|.
T Consensus       117 ~~ivHrDlK~~NiLld~~~~~Kl~DFGla~  146 (262)
T cd05058         117 KKFVHRDLAARNCMLDESFTVKVADFGLAR  146 (262)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             994757578240888899968997646551


No 341
>cd05075 PTKc_Axl Catalytic Domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=94.24  E-value=0.035  Score=33.75  Aligned_cols=29  Identities=31%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             74440223464225627960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      ++++|+|+.+.|||++.+...-|.||+.+
T Consensus       131 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls  159 (272)
T cd05075         131 KSFIHRDLAARNCMLNENMNVCVADFGLS  159 (272)
T ss_pred             CCEECCCCCCCEEEECCCCCEEEECCCCC
T ss_conf             98364767612389889998998105112


No 342
>cd05103 PTKc_VEGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=94.23  E-value=0.45  Score=26.56  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=25.2

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|.|+-+.|||++.+...-|-||+.|.
T Consensus       198 ~~ivHRDLK~~NiLl~~~~~vKi~DFGlar  227 (343)
T cd05103         198 RKCIHRDLAARNILLSENNVVKICDFGLAR  227 (343)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEECCCCCCC
T ss_conf             886667478500757789978981372340


No 343
>KOG0596 consensus
Probab=94.21  E-value=0.11  Score=30.53  Aligned_cols=29  Identities=41%  Similarity=0.728  Sum_probs=25.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .|+||.||.|-|.|+-++.+. +|||+-|-
T Consensus       479 ~gIVHSDLKPANFLlVkG~LK-LIDFGIA~  507 (677)
T KOG0596         479 HGIVHSDLKPANFLLVKGRLK-LIDFGIAN  507 (677)
T ss_pred             HCEEECCCCCCCEEEEEEEEE-EEEECHHC
T ss_conf             230004777531788832477-66401111


No 344
>cd05098 PTKc_FGFR1 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=94.21  E-value=0.027  Score=34.45  Aligned_cols=153  Identities=18%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             EEECCCCCEEEEEEEEE---CCC------CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             10046681200179994---399------589998216699889---999999999985326775551001026778752
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT---SKG------TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t---~~~------~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      .+.|..|.--+.|+.+.   ++.      +..+|+........+   +-.++.+|..|.++    |.+++-. |.  ..-
T Consensus        23 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~~~~E~~~l~~l~~H----~nIv~l~-g~--~~~   95 (307)
T cd05098          23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH----KNIINLL-GA--CTQ   95 (307)
T ss_pred             CCEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-EE--EEE
T ss_conf             4698126671999999926776678703799999978768989999999999999851499----9870799-99--988


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             2451557864788707689989999999986436753-068754332311245645766752001552278899999998
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQK-TKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~-~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
                      .+..+.+++|++|.++..     .      |   +.. ..+......+...+.. ...+...     ......+..-+..
T Consensus        96 ~~~~~lV~Ey~~~GsL~~-----~------L---~~~~~~~~~~~~~~~~~~~~-~l~~~~~-----~~~~~qia~gl~y  155 (307)
T cd05098          96 DGPLYVIVEYASKGNLRE-----Y------L---RARRPPGMEYCYNPTQVPEE-QLSFKDL-----VSCAYQVARGMEY  155 (307)
T ss_pred             CCEEEEEEEECCCCCHHH-----H------H---HHCCCCCCCCCCCCCCCCCC-CCCHHHH-----HHHHHHHHHHHHH
T ss_conf             998899998069999999-----9------9---86277642112465547212-3799999-----9999999999999


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+       +++||.|+.+.|||++.+...-|.||+.|.
T Consensus       156 LH~-------~~iiHRDLK~~NILl~~~~~~Ki~DFGla~  188 (307)
T cd05098         156 LAS-------KKCIHRDLAARNVLVTEDNVMKIADFGLAR  188 (307)
T ss_pred             HHH-------CCCCCCCCCCCCEEECCCCCEEEEEECCCC
T ss_conf             984-------899678667020207689978971502232


No 345
>cd05116 PTKc_Syk Catalytic Domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=94.21  E-value=0.1  Score=30.71  Aligned_cols=131  Identities=19%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             CCCEEEEEEE--EE-CCC-CEEEEEECCCC-CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             6812001799--94-399-58999821669-988---9999999999985326775551001026778752245155786
Q gi|254780795|r   32 HGVENSNFVI--QT-SKG-TFILTIYEKRM-NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        32 ~G~~Ntny~v--~t-~~~-~yiLri~e~~~-~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
                      .|.--+.|+-  .. +.+ .+.+|++.... +..   ++..|+++|..|..     |.+++-- |-  . ..+..+.+++
T Consensus         5 ~G~fG~V~~g~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g~--~-~~~~~~ivmE   75 (257)
T cd05116           5 SGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDN-----PYIVRMI-GI--C-EAESWMLVME   75 (257)
T ss_pred             CCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--E-ECCCEEEEEE
T ss_conf             088809999899978999799999985356997999999999999986799-----9880588-99--9-5894799998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
                      |.+|.++.           ..|-+    ...+        .....            ..+...+...+..+.+       
T Consensus        76 ~~~~g~L~-----------~~L~~----~~~~--------~~~~~------------~~~~~qia~gl~yLH~-------  113 (257)
T cd05116          76 LAELGPLN-----------KFLQK----NKHV--------TEKNI------------TELVHQVSMGMKYLEE-------  113 (257)
T ss_pred             CCCCCCHH-----------HHHHH----CCCC--------CHHHH------------HHHHHHHHHHHHHHHH-------
T ss_conf             58999999-----------99853----7999--------99999------------9999999999999986-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .++||+|+.+.|||++.+...-|.||+.+.
T Consensus       114 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~  143 (257)
T cd05116         114 TNFVHRDLAARNVLLVTQHYAKISDFGLSK  143 (257)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf             893766167655888489978999747642


No 346
>KOG0583 consensus
Probab=94.08  E-value=0.078  Score=31.48  Aligned_cols=32  Identities=41%  Similarity=0.621  Sum_probs=27.3

Q ss_pred             CCEEECCCCCCCEEECCC--CCEEEECCCCCCCCH
Q ss_conf             744402234642256279--604873162135680
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNN--KIMGLIDFYFSCNDF  216 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~--~i~giIDF~~~~~~~  216 (316)
                      +|++|.|+.+.|+|++++  ++. ++||+.+....
T Consensus       139 ~gi~HRDLK~ENilld~~~~~~K-l~DFG~s~~~~  172 (370)
T KOG0583         139 RGIVHRDLKPENILLDGNEGNLK-LSDFGLSAISP  172 (370)
T ss_pred             CCCCCCCCCHHHEEECCCCCCEE-EEECCCCCCCC
T ss_conf             59755657787733238888579-85378851357


No 347
>cd05089 PTKc_Tie1 Catalytic Domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=94.06  E-value=0.034  Score=33.83  Aligned_cols=150  Identities=19%  Similarity=0.149  Sum_probs=69.5

Q ss_pred             ECCCCCEEEEEEEEEC-CCC---EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf             0466812001799943-995---899982166998---899999999999853267755510010267787522451557
Q gi|254780795|r   29 PIIHGVENSNFVIQTS-KGT---FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI  101 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~-~~~---yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L  101 (316)
                      -|..|.--+.|+.... +|.   ..+|+..+....   .++..|+++|..|.++    |.+++-. |  ...-.+..+.+
T Consensus         9 ~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~H----pnIV~l~-g--~~~~~~~~~iV   81 (297)
T cd05089           9 VIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHH----PNIINLL-G--ACENRGYLYIA   81 (297)
T ss_pred             EEEECCCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-E--EECCCCEEEEE
T ss_conf             995178959999999379809999999977335847899999999999871289----9888886-7--98239878999


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             86478870768998999999998643675306875-43323-11245645766752001552278899999998887652
Q gi|254780795|r  102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFH-LYRKN-TLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP  179 (316)
Q Consensus       102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~-~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  179 (316)
                      ++|.+|.++...           |-+ ++....-+ ..+.. ......+...+         .....+...+..+.    
T Consensus        82 ~Ey~~~G~L~~~-----------l~~-~~~~~~~~~~~~~~~~~~~l~~~~~l---------~i~~qia~gl~yLH----  136 (297)
T cd05089          82 IEYAPYGNLLDF-----------LRK-SRVLETDPAFAKEHGTASTLTSQQLL---------QFASDVATGMQYLS----  136 (297)
T ss_pred             EECCCCCCHHHH-----------HHH-CCCCCCCCHHHHHCCCCCCCCHHHHH---------HHHHHHHHHHHHHH----
T ss_conf             970599879999-----------973-56554461022203665778999999---------99999999999884----


Q ss_pred             HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             1077744402234642256279604873162135
Q gi|254780795|r  180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .+++||.|+.+.|||++++...-|.||+.|.
T Consensus       137 ---~~~IiHRDLKp~NILl~~~~~~KI~DFGls~  167 (297)
T cd05089         137 ---EKQFIHRDLAARNVLVGENLASKIADFGLSR  167 (297)
T ss_pred             ---CCCCCCCCCCHHEEEECCCCCEEEEECCCCC
T ss_conf             ---0991557566422899899988980156786


No 348
>cd05054 PTKc_VEGFR Catalytic Domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=93.98  E-value=0.033  Score=33.91  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=25.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+.+.|||++++...-|-||+.|.
T Consensus       192 ~~iiHRDLK~~NiLl~~~~~vKi~DFGlar  221 (337)
T cd05054         192 RKCIHRDLAARNILLSENNVVKICDFGLAR  221 (337)
T ss_pred             CCEECCCCCHHHEEECCCCCEEEEECCCCC
T ss_conf             891346365898778889989997263530


No 349
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=93.69  E-value=0.045  Score=33.03  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=24.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|+|+.+.|||++++...-|-||+.|.
T Consensus       132 ~~ivHrDlKp~NiLl~~~~~~kl~DFGls~  161 (273)
T cd05035         132 RNFIHRDLAARNCMLREDMTVCVADFGLSK  161 (273)
T ss_pred             CCCCCCCCCHHEEEECCCCCEEEECCCCCE
T ss_conf             992767676202889899978994178861


No 350
>cd05033 PTKc_EphR Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=93.65  E-value=0.58  Score=25.86  Aligned_cols=136  Identities=18%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             ECCCCCEEEEEEEEEC-CC----CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             0466812001799943-99----58999821669988---9999999999985326775551001026778752245155
Q gi|254780795|r   29 PIIHGVENSNFVIQTS-KG----TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~-~~----~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
                      -|..|.--+.|+..-. ++    ...+|+........   ++..|+.+|..|..     |.+++-. |-  ..-.+..+.
T Consensus        11 ~IG~G~fg~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~l~-g~--~~~~~~~~l   82 (266)
T cd05033          11 VIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDH-----PNIIRLE-GV--VTKSRPVMI   82 (266)
T ss_pred             EEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--EEECCEEEE
T ss_conf             993076839999999279965079999998865797899999999999984899-----7881199-99--968999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
                      +++|++|.++..           .   |+.....+        .   +....         .....+...+..+.+    
T Consensus        83 V~Ey~~~GsL~~-----------~---L~~~~~~l--------~---~~~~~---------~i~~~ia~gl~yLH~----  124 (266)
T cd05033          83 ITEYMENGSLDK-----------F---LRENDGKF--------T---VGQLV---------GMLRGIASGMKYLSE----  124 (266)
T ss_pred             EEECCCCCCHHH-----------H---HHHCCCCC--------C---HHHHH---------HHHHHHHHHHHHHHH----
T ss_conf             998589996999-----------9---97278999--------9---99999---------999999999998855----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                         .++||.|+.+.|||.+.+...-|-||+.+.
T Consensus       125 ---~~ivHrDlK~~NILl~~~~~~Kl~DFGls~  154 (266)
T cd05033         125 ---MNYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (266)
T ss_pred             ---CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             ---888705567213778799988996567775


No 351
>KOG0594 consensus
Probab=93.60  E-value=0.11  Score=30.54  Aligned_cols=146  Identities=18%  Similarity=0.269  Sum_probs=69.1

Q ss_pred             EEEECCCCCEEEEEEEEE-CCCC-EEEEEEC---C-CCCHHHHHHHHHHHHHHHHCC-C-CCCCCCCCCHHHHHHHHCCC
Q ss_conf             310046681200179994-3995-8999821---6-699889999999999985326-7-75551001026778752245
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQT-SKGT-FILTIYE---K-RMNEKDLPVFIELLHYISRNK-L-PCPIPIPRNDGKLYGFLCKK   97 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e---~-~~~~~~l~~~~~ll~~L~~~g-i-pvP~pi~~~~G~~~~~~~~k   97 (316)
                      .++.|.+|.--+.|.... ..|+ ++||..+   + ..-....-.|+.+++.|+... + ..-..+.+.+.   ..-.++
T Consensus        15 ~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~---~~~~~~   91 (323)
T KOG0594          15 KVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN---HRGIGK   91 (323)
T ss_pred             HHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCC---CCCCCE
T ss_conf             99996799735899999806898799999862455668984146799999974777675777756750454---566635


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r   98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      -..+++|++=.            +-+.+-.+-...++.+.                    ..-..+...|..-++++.  
T Consensus        92 l~lvfe~~d~D------------L~~ymd~~~~~~~g~~~--------------------~~ik~~m~Qll~gl~~~H--  137 (323)
T KOG0594          92 LYLVFEFLDRD------------LKKYMDSLPKKPQGLPP--------------------RLIKSFMRQLLRGLAFLH--  137 (323)
T ss_pred             EEEEEEEECCC------------HHHHHHHCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHH--
T ss_conf             99999864350------------89999844665568988--------------------999999999999999998--


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             521077744402234642256279604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                           ..+++|.|+.|.|+|++++...-++||+-|.
T Consensus       138 -----~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAr  168 (323)
T KOG0594         138 -----SHGILHRDLKPQNLLISSSGVLKLADFGLAR  168 (323)
T ss_pred             -----HCCEECCCCCCCEEEECCCCCEEEEECCHHH
T ss_conf             -----6782246687001788798868661044277


No 352
>KOG1164 consensus
Probab=93.59  E-value=0.59  Score=25.80  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             EEEEEECCCCCEEEEEEEEECCC---CEEEEEECC--CCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             05310046681200179994399---589998216--6998899999999999853--2677555100102677875224
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQTSKG---TFILTIYEK--RMNEKDLPVFIELLHYISR--NKLPCPIPIPRNDGKLYGFLCK   96 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t~~~---~yiLri~e~--~~~~~~l~~~~~ll~~L~~--~gipvP~pi~~~~G~~~~~~~~   96 (316)
                      ..-.+.|..|--.+.|.+.-.+.   .+++++-..  ......+..+..++..|..  ..-.+|..+..  |.   .-.+
T Consensus        20 ~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~--G~---~~~~   94 (322)
T KOG1164          20 YKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDH--GR---STED   94 (322)
T ss_pred             EEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEC--CC---CCCC
T ss_conf             799877179998389999965888676899998631567764210599999987414577898857744--65---5786


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             51557864788707689989999999986436753068754332311245645766752001552278899999998887
Q gi|254780795|r   97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE  176 (316)
Q Consensus        97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (316)
                      ..+.||+-+ |.     +...+       -+.+. .+.|..        ..+..+.            ..+.+.+..+. 
T Consensus        95 ~~~iVM~l~-G~-----sL~dl-------~~~~~-~~~fs~--------~T~l~ia------------~q~l~~l~~lH-  139 (322)
T KOG1164          95 FNFIVMSLL-GP-----SLEDL-------RKRNP-PGRFSR--------KTVLRIA------------IQNLNALEDLH-  139 (322)
T ss_pred             CCEEEEECC-CC-----CHHHH-------HHHCC-CCCCCC--------CHHHHHH------------HHHHHHHHHHH-
T ss_conf             488999615-88-----99999-------97577-788783--------0399999------------99999999998-


Q ss_pred             HHHHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCC
Q ss_conf             6521077744402234642256279-----604873162135
Q gi|254780795|r  177 SWPKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSC  213 (316)
Q Consensus       177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~  213 (316)
                            ..|+||.|+.|+|+.+...     +..=+|||+.|.
T Consensus       140 ------~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164         140 ------SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             ------HCCEECCCCCHHHEEECCCCCCCCCEEEEEECCCCC
T ss_conf             ------488343668767646225676655458897211451


No 353
>KOG0198 consensus
Probab=93.43  E-value=0.63  Score=25.63  Aligned_cols=138  Identities=19%  Similarity=0.252  Sum_probs=69.1

Q ss_pred             ECCCCCEEEEEEEEECC-CCE-EEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             04668120017999439-958-99982166--998899999999999853267755510010267787522451557864
Q gi|254780795|r   29 PIIHGVENSNFVIQTSK-GTF-ILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~-~~y-iLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      -|..|.--+.|..+..+ |.+ -.|..+..  ...+.|..++.+|..|.     .|.+++-.......+- -....+++|
T Consensus        24 ~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~-----~p~IV~~~G~~~~~~~-~~~~i~mEy   97 (313)
T KOG0198          24 LLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLN-----HPNIVQYYGSSSSREN-DEYNIFMEY   97 (313)
T ss_pred             CCCCCCCEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCC-----CCCEEEECCCCCCCCC-EEEEEEEEC
T ss_conf             1067665699999965777522565432024446788999999998479-----9878863785533567-066766530


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      ++|.++.           ..+.+.    .+ +++.          ...        ......+.+-+..+.       .+
T Consensus        98 ~~~Gsl~-----------~~~~~~----g~-~l~E----------~~v--------~~ytr~iL~GL~ylH-------s~  136 (313)
T KOG0198          98 APGGSLS-----------DLIKRY----GG-KLPE----------PLV--------RRYTRQILEGLAYLH-------SK  136 (313)
T ss_pred             CCCCCHH-----------HHHHHC----CC-CCCH----------HHH--------HHHHHHHHHHHHHHH-------HC
T ss_conf             4799289-----------999873----89-9987----------999--------999999999999997-------59


Q ss_pred             CEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             4440223464225627-9604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      |++|.|+.++|+|+.. +...-+-||+-+.
T Consensus       137 g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198         137 GIVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             CEECCCCCCCEEEEECCCCCEEECCCCCCC
T ss_conf             875057651307880799907962486234


No 354
>cd05043 PTK_Ryk Pseudokinase Domain of the Receptor related to tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It ac
Probab=93.39  E-value=0.062  Score=32.13  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|+|+.+.|||++++...-|-||+-+.
T Consensus       136 ~~ivHRDLK~~NiLl~~~~~vKi~DFGla~  165 (280)
T cd05043         136 RGVIHKDIAARNCVIDEELQVKITDNALSR  165 (280)
T ss_pred             CCEECCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             993545125031699899978993054664


No 355
>cd05101 PTKc_FGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.13  E-value=0.048  Score=32.86  Aligned_cols=152  Identities=18%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             EEECCCCCEEEEEEEEE---CC--C----CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             10046681200179994---39--9----589998216699889---999999999985326775551001026778752
Q gi|254780795|r   27 VQPIIHGVENSNFVIQT---SK--G----TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t---~~--~----~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
                      .+.|..|.--+.|+.+.   ++  +    ...+|+........+   +-.++.+|..|.++    |.+++-. |.  ..-
T Consensus        20 ~~~lG~G~FG~Vy~a~~~g~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~~l~~l~~H----pNIV~~~-g~--~~~   92 (304)
T cd05101          20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH----KNIINLL-GA--CTQ   92 (304)
T ss_pred             CCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-EE--EEE
T ss_conf             3689316471999989806667777500699999978657989999999999999851489----9973799-99--998


Q ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             2451557864788707689989999999986436753068--75433231124564576675200155227889999999
Q gi|254780795|r   95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN--FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC  172 (316)
Q Consensus        95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~--f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  172 (316)
                      .+..+.+++|++|.++..           .|-.-......  +...+.+..     ...+....     .....+...+.
T Consensus        93 ~~~~~iv~Ey~~~GsL~~-----------~l~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~-----~~~~qia~gl~  151 (304)
T cd05101          93 DGPLYVIVEYASKGNLRE-----------YLRARRPPGMEYSYDIARVPDE-----QMTFKDLV-----SCTYQVARGME  151 (304)
T ss_pred             CCEEEEEEECCCCCCHHH-----------HHHHCCCCCCCCCCHHHCCCCC-----CCCHHHHH-----HHHHHHHHHHH
T ss_conf             998999998179998999-----------9986388642210011026422-----36899999-----99999999999


Q ss_pred             HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             88876521077744402234642256279604873162135
Q gi|254780795|r  173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .+.+       +++||.|+.+.|||++++...-|-||+.|.
T Consensus       152 yLH~-------~~iiHRDLK~~NiLl~~~~~~Ki~DFGla~  185 (304)
T cd05101         152 YLAS-------QKCIHRDLAARNVLVTENNVMKIADFGLAR  185 (304)
T ss_pred             HHHH-------CCCCCCCCCHHHEEECCCCCEEEEEEECCE
T ss_conf             9974-------886578777788557589958985401120


No 356
>cd05100 PTKc_FGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.08  E-value=0.065  Score=31.98  Aligned_cols=30  Identities=33%  Similarity=0.488  Sum_probs=25.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+.+.|||++++...-|-||+.|.
T Consensus       153 ~~iiHRDLKp~NILl~~~~~vKI~DFGlar  182 (334)
T cd05100         153 QKCIHRDLAARNVLVTEDNVMKIADFGLAR  182 (334)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             899778686122779899989998678870


No 357
>KOG0599 consensus
Probab=93.02  E-value=0.17  Score=29.35  Aligned_cols=31  Identities=39%  Similarity=0.760  Sum_probs=26.0

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +.++|.|+.|.|||.+++.-.-+-||+++|.
T Consensus       142 ~~IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599         142 RNIVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             HHHHHCCCCHHHEEECCCCCEEEECCCEEEC
T ss_conf             4344223686456431566358732540212


No 358
>KOG1152 consensus
Probab=92.99  E-value=0.14  Score=29.84  Aligned_cols=36  Identities=36%  Similarity=0.518  Sum_probs=29.5

Q ss_pred             HHCC-CCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             2107-77444022346422562796048731621356
Q gi|254780795|r  179 PKNL-PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       179 ~~~L-p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      ++.| -+|++|.|....||+++++...-+|||+-+.+
T Consensus       683 i~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~  719 (772)
T KOG1152         683 IKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAY  719 (772)
T ss_pred             CCCCCCCCCEECCCCCCCEEEECCCEEEEEECCCHHH
T ss_conf             1012325723024565547982687389864263554


No 359
>KOG1187 consensus
Probab=92.93  E-value=0.2  Score=28.81  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCC-EEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             89999999998489986053100466812001799943995-89998216699--8899999999999853267755510
Q gi|254780795|r    7 PPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGT-FILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPI   83 (316)
Q Consensus         7 ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~-yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi   83 (316)
                      .+-+||..--..|.-..++.     .|---+.|+-...+|+ ..+|.......  ..+...++.++..+...++ | ..+
T Consensus        65 fs~~el~~AT~~Fs~~~~ig-----~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ev~~ls~l~H~Nl-v-~Ll  137 (361)
T KOG1187          65 FSYDELRKATNNFSESNLIG-----EGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNL-V-KLL  137 (361)
T ss_pred             EEHHHHHHHHHCCCHHHEEE-----ECCCEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-C-CEE
T ss_conf             40999999973677311399-----4588778999968980899998246677433879999999843898684-5-388


Q ss_pred             CCCHHHHHHHHCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             0102677875224-515578647887076899899999999864367530687543323112456457667520015522
Q gi|254780795|r   84 PRNDGKLYGFLCK-KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED  162 (316)
Q Consensus        84 ~~~~G~~~~~~~~-k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~  162 (316)
                          | +. .-.+ .++.+|+|++..++.              -.||.....          ...|...+.         
T Consensus       138 ----G-yC-~e~~~~~~LVYEym~nGsL~--------------d~L~~~~~~----------~L~W~~R~k---------  178 (361)
T KOG1187         138 ----G-YC-LEGGEHRLLVYEYMPNGSLE--------------DHLHGKKGE----------PLDWETRLK---------  178 (361)
T ss_pred             ----E-EE-ECCCCCEEEEEECCCCCCHH--------------HHHCCCCCC----------CCCHHHHHH---------
T ss_conf             ----8-88-16998158999568999889--------------985578888----------989899999---------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHH
Q ss_conf             7889999999888765210777444022346422562796048731621356800
Q gi|254780795|r  163 LKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL  217 (316)
Q Consensus       163 ~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~  217 (316)
                      +.-.+...+.++.    ...+..+||+|+.+.|||.+.+-..-|-||+.|..++.
T Consensus       179 Ia~g~A~gL~yLH----~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~  229 (361)
T KOG1187         179 IALGAARGLAYLH----EGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPE  229 (361)
T ss_pred             HHHHHHHHHHHHC----CCCCCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCC
T ss_conf             9999988999872----68999878797789996078899768365656502675


No 360
>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]
Probab=92.90  E-value=0.75  Score=25.11  Aligned_cols=178  Identities=17%  Similarity=0.145  Sum_probs=82.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCC-CHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999853267755510010267787522451557864788707-----689-989999999986436753068754332
Q gi|254780795|r   67 ELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL-----NHI-SDIHCEEIGSMLASMHQKTKNFHLYRK  140 (316)
Q Consensus        67 ~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~-----~~~-~~~~~~~lG~~La~lH~~~~~f~~~r~  140 (316)
                      .+|..-.  |.-+.+++.- +|+         +.|+++..|...     ..- +.+..+-+.+.++++|.--.+.+   +
T Consensus        57 ~ll~ww~--G~Gaarvla~-d~~---------alLlEra~~~rsl~~l~~~G~Dd~aTrIac~a~~rlh~Prp~pp---p  121 (274)
T COG3570          57 DLLAWWD--GIGAARVLAQ-DDN---------ALLLERAGGERSLDVLVRDGNDDAATRIACEALARLHAPRPSPP---P  121 (274)
T ss_pred             HHHHHHH--CCCCCHHHCC-CCC---------HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC---C
T ss_conf             5666650--6771001215-761---------78887605640389998707833899999999999608999989---5


Q ss_pred             CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC
Q ss_conf             3112-456457667520015522788999999988876521077744402234642256279604873162135680001
Q gi|254780795|r  141 NTLS-PLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY  219 (316)
Q Consensus       141 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~  219 (316)
                      .... ..|...++.+...  +..+.-.-...-..+.. .|.+  ....|||+|.+|||=-+.+=.=+||=- --+|.+.|
T Consensus       122 ~L~pL~~wf~sLf~~a~~--d~~i~v~aA~~A~~LL~-~p~d--i~pLHGDlHH~Nild~~~rGWlvIDPk-gl~Gdrg~  195 (274)
T COG3570         122 ELLPLERWFESLFRKARQ--DGSIYVEAARAAQTLLD-TPRD--IRPLHGDLHHGNILDGDRRGWLVIDPK-GLIGDRGF  195 (274)
T ss_pred             CCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHC-CCCC--CCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCC
T ss_conf             556489999999877764--27700269999999864-8664--656766444543146886751787654-44586552


Q ss_pred             CHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             989999864311-688878788999998876418899899999999999999
Q gi|254780795|r  220 DLSICINAWCFD-ENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAA  270 (316)
Q Consensus       220 DLAi~i~~~c~~-~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aa  270 (316)
                      |.|   |-+|-- .+-...+.+...-++=....--+++  ...+...+..++
T Consensus       196 D~A---Nlf~Np~~~~~~~pgRi~rqlai~a~a~~l~p--~rLlqw~~Ay~g  242 (274)
T COG3570         196 DYA---NLFCNPLDDLALAPGRIARQLAIFAHALGLDP--RRLLQWAIAYGG  242 (274)
T ss_pred             CHH---HHHCCCCHHHHHCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_conf             267---65248864530081889999999999846698--999999999711


No 361
>KOG0903 consensus
Probab=92.89  E-value=0.42  Score=26.75  Aligned_cols=95  Identities=22%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             ECCCCCCCEEECC-CCCEEEECCCCCCCC---HHHCCHHH---HHHHHHHCCCCCCCHHHH---H-HHHHHHHHC-----
Q ss_conf             0223464225627-960487316213568---00019899---998643116888787889---9-999887641-----
Q gi|254780795|r  188 HADLFPDNVLFYN-NKIMGLIDFYFSCND---FLMYDLSI---CINAWCFDENNTYNPSRG---F-SILNGYNKV-----  251 (316)
Q Consensus       188 HgDl~~~NiL~~~-~~i~giIDF~~~~~~---~~i~DLAi---~i~~~c~~~~~~~d~~~~---~-~~l~gY~~v-----  251 (316)
                      =-|=|.+|||.+. +.|. -|||++.-.+   ..-|+-|-   +--+  .+--|.++.+.+   + -+++||.+.     
T Consensus       699 vKDRHNGNILiD~EGHII-HIDFGFmLsnsPgnvgFEsAPFKLT~Ey--lEvmgG~~~d~FdyfK~L~l~gf~a~RKhad  775 (847)
T KOG0903         699 VKDRHNGNILIDEEGHII-HIDFGFMLSNSPGNVGFESAPFKLTTEY--LEVMGGLDSDMFDYFKSLMLQGFMALRKHAD  775 (847)
T ss_pred             CCCCCCCCEEECCCCCEE-EEEEEEEECCCCCCCCCCCCCHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             212457735763788779-9863467248998765113741637999--9996587478999999999999999998789


Q ss_pred             ---------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             ---------------------------------8899899999999999999999999999876088
Q gi|254780795|r  252 ---------------------------------RKISENELQSLPTLLRGAALRFFLTRLYDSQNMP  285 (316)
Q Consensus       252 ---------------------------------rpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~  285 (316)
                                                       -.||+++...+-..+.-.+++=|-||+||.+..-
T Consensus       776 rIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~kS~~S~~TrlYD~fQyi  842 (847)
T KOG0903         776 RIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLISKSLDSITTRLYDSFQYI  842 (847)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             9999999961568886324675999999998542542999999999998611010334343788988


No 362
>KOG0192 consensus
Probab=92.61  E-value=0.42  Score=26.78  Aligned_cols=28  Identities=39%  Similarity=0.496  Sum_probs=23.8

Q ss_pred             EEECCCCCCCEEECCCC-CEEEECCCCCC
Q ss_conf             44022346422562796-04873162135
Q gi|254780795|r  186 IIHADLFPDNVLFYNNK-IMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~~~-i~giIDF~~~~  213 (316)
                      +||.|+.+.|+|++.+. ..-|=||+-+.
T Consensus       164 iIHrDLK~~NiLv~~~~~~~KI~DFGlsr  192 (362)
T KOG0192         164 IIHRDLKSDNILVDLKGKTLKIADFGLSR  192 (362)
T ss_pred             EEEEECCCCCEEECCCCCEEEECCCCCCH
T ss_conf             78743585427774888878879888775


No 363
>cd05102 PTKc_VEGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=92.45  E-value=0.096  Score=30.92  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=25.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+.+.|||++.+...-|-||+.|.
T Consensus       193 ~~iiHRDLK~~NiLl~~~~~vKi~DFGlsr  222 (338)
T cd05102         193 RKCIHRDLAARNILLSENNVVKICDFGLAR  222 (338)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             892346688686998899988983354651


No 364
>KOG0983 consensus
Probab=92.43  E-value=0.4  Score=26.92  Aligned_cols=30  Identities=40%  Similarity=0.624  Sum_probs=24.9

Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             774440223464225627-9604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      ..|+||.|..|+|||+++ ++|. +-||+-++
T Consensus       210 KH~viHRDvKPSNILlDe~GniK-lCDFGIsG  240 (391)
T KOG0983         210 KHGVIHRDVKPSNILLDERGNIK-LCDFGISG  240 (391)
T ss_pred             HCCEEECCCCCCCEEECCCCCEE-EECCCCCC
T ss_conf             42515435672316773679877-61044441


No 365
>KOG0659 consensus
Probab=92.42  E-value=0.72  Score=25.24  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=25.2

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      ..++|.|+.|+|+|+..+.+.-+=||+-++.
T Consensus       120 ~~IlHRDlKPnNLLis~~g~lKiADFGLAr~  150 (318)
T KOG0659         120 KWILHRDLKPNNLLISSDGQLKIADFGLARF  150 (318)
T ss_pred             HHHHCCCCCCCCEEECCCCCEEEECCCCHHC
T ss_conf             2100135770006776888687500242000


No 366
>KOG0612 consensus
Probab=92.17  E-value=0.38  Score=27.04  Aligned_cols=28  Identities=43%  Similarity=0.635  Sum_probs=13.5

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCC
Q ss_conf             74440223464225627-960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~  212 (316)
                      .|.||.|..|||||.+. |.|. +=|||-|
T Consensus       194 mgyVHRDiKPDNvLld~~GHik-LADFGsC  222 (1317)
T KOG0612         194 MGYVHRDIKPDNVLLDKSGHIK-LADFGSC  222 (1317)
T ss_pred             CCCEECCCCCCEEEECCCCCEE-ECCCHHH
T ss_conf             1510135784405763668675-2210567


No 367
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity 
Probab=91.96  E-value=0.4  Score=26.89  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CCEEECCCCCCCEEECCCC--------CEEEECCCCCC
Q ss_conf             7444022346422562796--------04873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNK--------IMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~--------i~giIDF~~~~  213 (316)
                      +++||+|+.+.|||++.+.        +.-+.||+.+.
T Consensus       119 ~~iiHrDlK~~NiLl~~~~~~k~~~~~~~kl~DfG~s~  156 (258)
T cd05078         119 KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCE
T ss_conf             89877856766388846677443675541322788760


No 368
>KOG1989 consensus
Probab=91.93  E-value=0.99  Score=24.34  Aligned_cols=147  Identities=20%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             ECCCCCEEEEEEEEECCC--CEEEE-EECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CC---CC
Q ss_conf             046681200179994399--58999-8216699889---999999999985326775551001026778752-24---51
Q gi|254780795|r   29 PIIHGVENSNFVIQTSKG--TFILT-IYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL-CK---KP   98 (316)
Q Consensus        29 ~i~~G~~Ntny~v~t~~~--~yiLr-i~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~-~~---k~   98 (316)
                      -|++|==-..|.+.+.++  +|+|| +|-.  ++..   +..|++.|+-|+.+.=-| ..+-+   ..+... ++   ..
T Consensus        44 vLAEGGFa~VYla~~~~~~~~~AlKrm~~~--de~~L~~v~~EI~~MK~L~gh~nIV-~yids---s~~~~~~~~~~~Ev  117 (738)
T KOG1989          44 VLAEGGFAQVYLAQDVKGGKKYALKRMYVN--DEEALNAVKREIDIMKLLSGHKNIV-SYIDS---SAINRSSNNGVWEV  117 (738)
T ss_pred             EECCCCCEEEEEEEECCCCCEEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCEE-EEECC---CCCCCCCCCCEEEE
T ss_conf             971477279999885388861565431038--7889999999999999824897644-67315---42230578853688


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      ..||+|.+|..+-          --+-.+++..   |.                       ..+..+.+....+.+... 
T Consensus       118 llLmEyC~gg~Lv----------d~mn~Rlq~~---lt-----------------------e~eVLkIf~dv~~AVa~m-  160 (738)
T KOG1989         118 LLLMEYCKGGSLV----------DFMNTRLQTR---LT-----------------------EDEVLKIFYDVCEAVAAM-  160 (738)
T ss_pred             EEEHHHCCCCCHH----------HHHHHHHHCC---CC-----------------------HHHHHHHHHHHHHHHHHH-
T ss_conf             7434243798599----------9999987536---77-----------------------378999999999999998-


Q ss_pred             HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC
Q ss_conf             21077744402234642256279604873162135680001
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY  219 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~  219 (316)
                       ..++--+||.|+..-|||...+.-.-+=||+-||.-....
T Consensus       161 -H~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~  200 (738)
T KOG1989         161 -HYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSP  200 (738)
T ss_pred             -HCCCCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCC
T ss_conf             -6379862000000120477689978857566666656787


No 369
>cd05036 PTKc_ALK_LTK Catalytic Domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic lymphoma kinase (ALK) and Leukocyte tyrosine (tyr) kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=91.89  E-value=0.1  Score=30.69  Aligned_cols=30  Identities=23%  Similarity=0.394  Sum_probs=24.0

Q ss_pred             CCEEECCCCCCCEEECC---CCCEEEECCCCCC
Q ss_conf             74440223464225627---9604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN---NKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~---~~i~giIDF~~~~  213 (316)
                      .+++|+|+.+.|||++.   +.+.-|.||+.+.
T Consensus       135 ~~ivHrDlKp~NiLl~~~g~~~~~Ki~DFGls~  167 (277)
T cd05036         135 NHFIHRDIAARNCLLTCKGPGRVAKIADFGMAR  167 (277)
T ss_pred             CCCCCCCCCHHHEEEECCCCCCEEEEEECCCCC
T ss_conf             991568775562899068998558999767741


No 370
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77  E-value=0.5  Score=26.24  Aligned_cols=16  Identities=25%  Similarity=0.254  Sum_probs=7.0

Q ss_pred             ECCCCCCCCHHHCCHH
Q ss_conf             3162135680001989
Q gi|254780795|r  207 IDFYFSCNDFLMYDLS  222 (316)
Q Consensus       207 IDF~~~~~~~~i~DLA  222 (316)
                      =|||....++++.||-
T Consensus        85 ~DFDe~~~g~~~~Dlv  100 (410)
T COG4320          85 ADFDEGHLGQYIWDLV  100 (410)
T ss_pred             CCCCHHHCCCHHHHHH
T ss_conf             3454333062389999


No 371
>KOG0585 consensus
Probab=91.57  E-value=0.12  Score=30.28  Aligned_cols=30  Identities=37%  Similarity=0.590  Sum_probs=25.4

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +|+||+|..|+|+|..++..+-|=||+-++
T Consensus       229 QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~  258 (576)
T KOG0585         229 QGIIHRDIKPSNLLLSSDGTVKISDFGVSN  258 (576)
T ss_pred             CCEECCCCCHHHEEECCCCCEEEECCCEEE
T ss_conf             472015666433577588858860351144


No 372
>TIGR02569 TIGR02569_actnb conserved hypothetical protein TIGR02569; InterPro: IPR013402    This entry has so far only been found in Actinobacteria, including at least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica - always in a single copy per genome. The function is unknown..
Probab=91.43  E-value=0.075  Score=31.60  Aligned_cols=201  Identities=14%  Similarity=0.161  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHH---CCC
Q ss_conf             899999999999853267755510010267787522451557864788707689--989999999986436753---068
Q gi|254780795|r   60 KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHI--SDIHCEEIGSMLASMHQK---TKN  134 (316)
Q Consensus        60 ~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~--~~~~~~~lG~~La~lH~~---~~~  134 (316)
                      +.-.+--++=+.|.-.|+.|.+||++.||.++..  |  +.--+|.+|..-+..  +..-.-+|.++++++|.=   +++
T Consensus        43 ~rsaWSarvRetL~p~GvRvvRP~rSTDGRyvva--G--WRA~~F~~Gt~~~RvDE~VvAalRL~~Al~d~~~Prfltq~  118 (279)
T TIGR02569        43 ERSAWSARVRETLKPDGVRVVRPVRSTDGRYVVA--G--WRADTFEAGTLEKRVDETVVAALRLDEALADLEAPRFLTQD  118 (279)
T ss_pred             HHHCCCHHHCCCCCCCCEEEEECCCCCCCCEEEC--C--CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             1201302320234647457850241158754431--4--41131146888777550001522165566410587112467


Q ss_pred             CCCCCCCCCC------HHHHHHHH--------HHHHHCCCHHH--HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEE
Q ss_conf             7543323112------45645766--------75200155227--88999999988876521077744402234642256
Q gi|254780795|r  135 FHLYRKNTLS------PLNLKFLW--------AKCFDKVDEDL--KKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLF  198 (316)
Q Consensus       135 f~~~r~~~~~------~~~~~~~~--------~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~  198 (316)
                       +...+...+      ...|.+.=        .......++..  ...|...+..+.+  |-+-|.++.|||++-. +||
T Consensus       119 -p~~~~~~~DvF~~AD~~aWee~Pl~~~~~~~~~~~~~~~P~~lt~~~L~~~i~~Ll~--pi~~pnQv~HaDm~aT-~ly  194 (279)
T TIGR02569       119 -PVAEWAEIDVFVAADRAAWEERPLVSVPVGVDTAAVALDPQRLTSIDLLNKIAELLK--PIKSPNQVVHADMYAT-TLY  194 (279)
T ss_pred             -CCCCHHHCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHH-HHH
T ss_conf             -888712114666741411567884542788875211037266789999999988620--0256532001467889-874


Q ss_pred             CCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             27960487316213568000198999986431168887878899999887641889989999999999999999999999
Q gi|254780795|r  199 YNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRL  278 (316)
Q Consensus       199 ~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl  278 (316)
                      .|++--||-|. --..-|.-|==|+||.|-.  .-|.-|..    +|+=|+.   |.+-|.    ++|     |=++=|+
T Consensus       195 aGt~pP~vTDl-vpv~RP~g~tAav~iVDaL--l~GAvDeG----ii~Rfsh---lpe~~Q----llL-----RAl~fR~  255 (279)
T TIGR02569       195 AGTQPPAVTDL-VPVLRPAGYTAAVAIVDAL--LLGAVDEG----IIERFSH---LPEIEQ----LLL-----RALLFRL  255 (279)
T ss_pred             CCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH--HHHHHHHH----HHHHHHH---CCCCHH----HHH-----HHHHHHH
T ss_conf             07887931103-3462450255567886666--65114432----7888652---467258----999-----9999999


Q ss_pred             HHHHHCCCH
Q ss_conf             987608851
Q gi|254780795|r  279 YDSQNMPCN  287 (316)
Q Consensus       279 ~d~~~~~~~  287 (316)
                      --+-++|.+
T Consensus       256 av~alhp~s  264 (279)
T TIGR02569       256 AVYALHPRS  264 (279)
T ss_pred             HHHHHCCCC
T ss_conf             998727777


No 373
>KOG0984 consensus
Probab=91.35  E-value=0.57  Score=25.91  Aligned_cols=80  Identities=26%  Similarity=0.397  Sum_probs=50.2

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             74440223464225627-96048731621356800019899998643116--8887878899999887641889989999
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWCFDE--NNTYNPSRGFSILNGYNKVRKISENELQ  260 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~--~~~~d~~~~~~~l~gY~~vrpLs~~E~~  260 (316)
                      .++||.|..|+|||.+. ++|. +-||+-++  ++.--+|.++-+-|--.  ...++++.-++   ||.-..    +-..
T Consensus       168 L~vIHRDvKPsNiLIn~~GqVK-iCDFGIsG--~L~dSiAkt~daGCkpYmaPEri~~e~n~~---gY~vks----DvWS  237 (282)
T KOG0984         168 LSVIHRDVKPSNILINYDGQVK-ICDFGISG--YLVDSIAKTMDAGCKPYMAPERINPELNQK---GYSVKS----DVWS  237 (282)
T ss_pred             HHHHHCCCCCCEEEECCCCCEE-ECCCCCCE--EEHHHHHHHHHCCCCCCCCHHHCCCCCCCC---CCEEEH----HHHH
T ss_conf             6561034785507885689688-70144442--652456777754897667821247555756---530101----0454


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780795|r  261 SLPTLLRGAALRF  273 (316)
Q Consensus       261 ~l~~ll~~aalRf  273 (316)
                      +=-.++-+|-+||
T Consensus       238 LGItmiElA~lr~  250 (282)
T KOG0984         238 LGITMIEMAILRF  250 (282)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             2113541312045


No 374
>cd05037 PTK_Jak_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=91.28  E-value=0.57  Score=25.89  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             CCEEECCCCCCCEEECCCCC-------EEEECCCCCC
Q ss_conf             74440223464225627960-------4873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKI-------MGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i-------~giIDF~~~~  213 (316)
                      +++||+|+.+.|||+.+...       ..+-||+.+.
T Consensus       120 ~~iiHrDlK~~NILl~~~~~~~~~~~~~kl~Dfg~~~  156 (259)
T cd05037         120 KKLVHGNVCGKNILLAREGLNEGCVPFIKLSDPGIPI  156 (259)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCC
T ss_conf             9951677651148970578765545414743577553


No 375
>KOG0670 consensus
Probab=91.10  E-value=0.53  Score=26.11  Aligned_cols=31  Identities=42%  Similarity=0.679  Sum_probs=25.2

Q ss_pred             CCEEECCCCCCCEEECCCC-CEEEECCCCCCC
Q ss_conf             7444022346422562796-048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNK-IMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~-i~giIDF~~~~~  214 (316)
                      .|++|+|..|||+|++.++ +.-+-||+-|..
T Consensus       555 c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~  586 (752)
T KOG0670         555 CGVLHADIKPDNILVNESKNILKLCDFGSASF  586 (752)
T ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCCC
T ss_conf             49323145766367516756343236765010


No 376
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=90.93  E-value=1.2  Score=23.69  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCCC-CH---HHCCHH-----HHHHHHHHCCCCCCCHH---HHH-HHHHHHHHCC
Q ss_conf             40223464225627-96048731621356-80---001989-----99986431168887878---899-9998876418
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN-DF---LMYDLS-----ICINAWCFDENNTYNPS---RGF-SILNGYNKVR  252 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~-~~---~i~DLA-----i~i~~~c~~~~~~~d~~---~~~-~~l~gY~~vr  252 (316)
                      ==||=|.+|+|++. +++. -|||++... +|   .-+|-|     --+... +  +|..+.+   +++ -..+||..+|
T Consensus       163 gIgDRHndNIml~~~Ghlf-HIDFGfil~~~pg~~~k~E~aPFkLt~emv~v-m--GG~~~s~~f~~F~~lc~~af~~lR  238 (311)
T cd05167         163 QIKDRHNGNIMIDDDGHII-HIDFGFIFEISPGGNLKFESAPFKLTKEMVQI-M--GGSMEATPFKWFVELCVRAFLAVR  238 (311)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCEECCHHHHHH-H--CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             1566578844598999799-97405540567788888688984337999998-6--899776789999999999999999


Q ss_pred             CCCHHHHHHHHH
Q ss_conf             899899999999
Q gi|254780795|r  253 KISENELQSLPT  264 (316)
Q Consensus       253 pLs~~E~~~l~~  264 (316)
                      +=+..=+..+..
T Consensus       239 k~~~~ii~L~~l  250 (311)
T cd05167         239 PYMDEIVSLVEL  250 (311)
T ss_pred             HHHHHHHHHHHH
T ss_conf             989999999999


No 377
>KOG0660 consensus
Probab=90.74  E-value=0.13  Score=30.06  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=26.4

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf             74440223464225627960487316213568
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCND  215 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~  215 (316)
                      .++||.|+.|+|++.+.+.-.-|-||+.|...
T Consensus       144 AnViHRDLKPsNll~n~~c~lKI~DFGLAR~~  175 (359)
T KOG0660         144 ANVIHRDLKPSNLLLNADCDLKICDFGLARYL  175 (359)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEECCCCCEEEC
T ss_conf             66034556644525526788785366531322


No 378
>KOG0575 consensus
Probab=90.68  E-value=0.57  Score=25.90  Aligned_cols=30  Identities=33%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             CCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf             744402234642256279-6048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~  214 (316)
                      .++||.|+..+|++.+++ +|. |=||+-|+.
T Consensus       137 ~~IiHRDLKLGNlfL~~~~~VK-IgDFGLAt~  167 (592)
T KOG0575         137 LGIIHRDLKLGNLFLNENMNVK-IGDFGLATQ  167 (592)
T ss_pred             CCCEECCCCHHHEEECCCCCEE-ECCCCEEEE
T ss_conf             5703224422120135767577-625401456


No 379
>cd05106 PTKc_CSF-1R Catalytic Domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-stimulating factor-1 receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=90.36  E-value=0.21  Score=28.66  Aligned_cols=30  Identities=27%  Similarity=0.459  Sum_probs=26.3

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+-..|||++++.+.-|=||+.|.
T Consensus       231 ~~iIHRDLaarNiLv~~~~~vKIaDFGLsr  260 (374)
T cd05106         231 KNCIHRDVAARNVLLTDGRVAKICDFGLAR  260 (374)
T ss_pred             CCEECCCCCHHEEEECCCCCEEEEECCCCC
T ss_conf             892327677401898689829995361010


No 380
>PRK09902 hypothetical protein; Provisional
Probab=90.21  E-value=1.4  Score=23.29  Aligned_cols=201  Identities=8%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEEEEEC-CCCCEEEEEEEEECCCCEEEEEECCCC--------CHHHHHHHHHHHHH
Q ss_conf             965770899999999984899860531004-668120017999439958999821669--------98899999999999
Q gi|254780795|r    1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPI-IHGVENSNFVIQTSKGTFILTIYEKRM--------NEKDLPVFIELLHY   71 (316)
Q Consensus         1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i-~~G~~Ntny~v~t~~~~yiLri~e~~~--------~~~~l~~~~~ll~~   71 (316)
                      |+|-+  ..++.+.+.+.=  |+..+---- -+|. ...+.+..+...|.+|-=.++.        .+.-.-.|...+..
T Consensus         1 ~~~~~--~~~~Fd~~W~~~--g~wVEePN~rRgGw-SGV~rl~~~g~~~Y~KRQ~nHl~rSl~hP~G~PTf~RE~~~i~~   75 (216)
T PRK09902          1 MAVSA--KHDEFNHWWATE--GDWVEEPNYRRNGM-SGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKE   75 (216)
T ss_pred             CCCCC--CHHHHHHHHHCC--CCCCCCCCCCCCCC-CEEEEEEECCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHH
T ss_conf             97661--053799998288--86205887778875-41389960895799997147522001067888409999999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             85326775551001026778752245155786-47887076899899999999864367530687543323112456457
Q gi|254780795|r   72 ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS-FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF  150 (316)
Q Consensus        72 L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~-~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~  150 (316)
                      |.+.|||||.++.-  | .-..-++..+.|++ -++|-    .+.+....                              
T Consensus        76 l~~lgI~v~~~vf~--~-~rk~~g~~rAiLVT~aL~Gf----~~Ld~w~a------------------------------  118 (216)
T PRK09902         76 LERAGVIVPKIVFG--E-AVKIEGEWRALLVTEDMAGF----ISIADWYA------------------------------  118 (216)
T ss_pred             HHHCCCCCCHHHHH--H-HHCCCCCEEEEEEECCCCCC----CCHHHHHH------------------------------
T ss_conf             99759982143665--5-10357846899986445676----30899973------------------------------


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHH
Q ss_conf             66752001552278899999998887652107774440223464225627--9604873162135680001989999864
Q gi|254780795|r  151 LWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAW  228 (316)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~  228 (316)
                      ..  ......+.....+...+.........   .++-||=+.|.-|++..  +--.++||+|-+-..-...--|.  .|+
T Consensus       119 ~~--~~~~~~~~~~~~~L~~~a~~l~rlH~---~~~qHgclYpKHIFvr~~g~~e~aLIDLEK~R~rL~~~~Aa~--~Dl  191 (216)
T PRK09902        119 QH--AVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAIN--HDF  191 (216)
T ss_pred             CC--CCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCEEEEECCCCCCEEEEEHHHHCHHHHHHHHHH--HHH
T ss_conf             33--41214799999999999999999986---783346775216999606873168867654021343778988--669


Q ss_pred             H--HCCCCCCCHHHHHHHHHHHHH
Q ss_conf             3--116888787889999988764
Q gi|254780795|r  229 C--FDENNTYNPSRGFSILNGYNK  250 (316)
Q Consensus       229 c--~~~~~~~d~~~~~~~l~gY~~  250 (316)
                      -  ......++..-++.+..+|..
T Consensus       192 ~QL~rh~~~~~~~dw~~~~~~y~~  215 (216)
T PRK09902        192 RQLEKYLEPIPKADWEQVKAYYYA  215 (216)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             999975468998899999999832


No 381
>KOG0598 consensus
Probab=90.21  E-value=0.44  Score=26.62  Aligned_cols=136  Identities=21%  Similarity=0.319  Sum_probs=70.7

Q ss_pred             EEEECCCCCEEEEEEEEECC-C-CEEEEEECCCC--CHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             31004668120017999439-9-58999821669--98899---999999999853267755510010267787522451
Q gi|254780795|r   26 SVQPIIHGVENSNFVIQTSK-G-TFILTIYEKRM--NEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        26 ~~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~~--~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      -++-|..|.=-..|+|.-.+ + -|-+|+-+++.  ...+.   -.|-.+|   .+  +..|-.+...   +-++-.++-
T Consensus        29 ~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL---~~--v~hPFiv~l~---ysFQt~~kL  100 (357)
T KOG0598          29 ILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNIL---SK--IKHPFIVKLI---YSFQTEEKL  100 (357)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH---HH--CCCCCEEEEE---EECCCCCEE
T ss_conf             465662167745899998365746317555266752012688889999999---71--6788474127---861258737


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             557864788707689989999999986436753068-7543323112456457667520015522788999999988876
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN-FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES  177 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~-f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  177 (316)
                      +.|.+|+.|..+              .  .|..-++ |+-        ....            -...+|.-.+..+.+ 
T Consensus       101 ylVld~~~GGeL--------------f--~hL~~eg~F~E--------~~ar------------fYlaEi~lAL~~LH~-  143 (357)
T KOG0598         101 YLVLDYLNGGEL--------------F--YHLQREGRFSE--------DRAR------------FYLAEIVLALGYLHS-  143 (357)
T ss_pred             EEEEECCCCCCH--------------H--HHHHHCCCCCH--------HHHH------------HHHHHHHHHHHHHHH-
T ss_conf             999954688519--------------9--99975277435--------5789------------999999999999986-


Q ss_pred             HHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             52107774440223464225627-9604873162135
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                            +|+||.|+.|.|||.+. +.|. +-||+-|-
T Consensus       144 ------~gIiyRDlKPENILLd~~GHi~-LtDFgL~k  173 (357)
T KOG0598         144 ------KGIIYRDLKPENILLDEQGHIK-LTDFGLCK  173 (357)
T ss_pred             ------CCEEECCCCHHHEEECCCCCEE-EECCCCCH
T ss_conf             ------7903135888995666888689-82166540


No 382
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with 
Probab=90.16  E-value=1.1  Score=24.11  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             EEECCCCCCCEEECC--CCCEEEECCCCC
Q ss_conf             440223464225627--960487316213
Q gi|254780795|r  186 IIHADLFPDNVLFYN--NKIMGLIDFYFS  212 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~--~~i~giIDF~~~  212 (316)
                      +-=||=|++|+|++.  |++. -|||+.|
T Consensus       183 lGlGDRH~~NILi~~~tG~vv-HIDFg~~  210 (280)
T cd05169         183 LGLGDRHPSNIMIDRLTGKVI-HIDFGDC  210 (280)
T ss_pred             EECCCCCCCCEEEECCCCCEE-EEECHHH
T ss_conf             131689864379986878789-9841665


No 383
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=90.14  E-value=1.5  Score=23.25  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             40223464225627-9604873162135
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      ==||=|.+|+|++. +++. -|||++.-
T Consensus       142 gigDRHn~NILl~~~Ghl~-HIDFGfil  168 (289)
T cd00893         142 QIKDRHNGNILLDSDGHII-HIDFGFIL  168 (289)
T ss_pred             CCCCCCCCCEEECCCCEEE-EEEEHHHH
T ss_conf             2576578855787888199-98602330


No 384
>KOG1167 consensus
Probab=90.13  E-value=0.36  Score=27.19  Aligned_cols=42  Identities=10%  Similarity=0.010  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf             8899999999999853267755510010267787522451557864788
Q gi|254780795|r   59 EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG  107 (316)
Q Consensus        59 ~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G  107 (316)
                      ...+.-|+++|..|..+.--  .++     ......++.-+.+++|++-
T Consensus        78 p~ri~~El~~L~~~gG~~ni--~~~-----~~~~rnnd~v~ivlp~~~H  119 (418)
T KOG1167          78 PSRILNELEMLYRLGGSDNI--IKL-----NGCFRNNDQVAIVLPYFEH  119 (418)
T ss_pred             CHHHHHHHHHHHHHCCCHHH--HCC-----HHHHCCCCEEEEEECCCCC
T ss_conf             23889999999985240020--010-----3331268813798426675


No 385
>cd05107 PTKc_PDGFR_beta Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=90.06  E-value=0.19  Score=28.95  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=26.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+-..|||++++.+.-|=||+.+.
T Consensus       258 ~~iiHRDLaarNiLv~~~~~~KIaDFGlar  287 (401)
T cd05107         258 KNCVHRDLAARNVLICEGKLVKICDFGLAR  287 (401)
T ss_pred             CCCCCCCCCCCEEEECCCCCEEECCCEEEE
T ss_conf             787254466043897489938968361003


No 386
>cd05105 PTKc_PDGFR_alpha Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=89.95  E-value=0.2  Score=28.81  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=26.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+-..|||++.+.+.-|=||+.+.
T Consensus       256 ~~iIHRDLaarNiLv~~~~~~KIaDFGLsr  285 (400)
T cd05105         256 KNCVHRDLAARNVLLAQGKIVKICDFGLAR  285 (400)
T ss_pred             CCCCCCCCCCCEEEECCCCEEEECCCCCEE
T ss_conf             784646577042897689918979662202


No 387
>KOG1151 consensus
Probab=89.23  E-value=0.57  Score=25.90  Aligned_cols=29  Identities=45%  Similarity=0.639  Sum_probs=22.2

Q ss_pred             CEEECCCCCCCEEECCCCCEE---EECCCCCC
Q ss_conf             444022346422562796048---73162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMG---LIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~g---iIDF~~~~  213 (316)
                      -+||-|+.|+|||..++...|   |-||+.+-
T Consensus       590 PIIHYDLKPgNILLv~GtacGeIKITDFGLSK  621 (775)
T KOG1151         590 PIIHYDLKPGNILLVNGTACGEIKITDFGLSK  621 (775)
T ss_pred             CEEEECCCCCCEEEECCCCCCEEEEECCCHHH
T ss_conf             70452167762798537633416763042244


No 388
>PRK09188 serine/threonine protein kinase; Provisional
Probab=89.18  E-value=1.7  Score=22.78  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             CCCEEEEECCCCCCC--CCC--CHHHHHHHHHHHHHHHHHC
Q ss_conf             451557864788707--689--9899999999864367530
Q gi|254780795|r   96 KKPANIFSFIKGSPL--NHI--SDIHCEEIGSMLASMHQKT  132 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~--~~~--~~~~~~~lG~~La~lH~~~  132 (316)
                      |+.+.+-+|++|..+  ..|  +..-.++.-++|-+||.++
T Consensus        91 d~~~L~R~~~~G~~l~la~P~gd~a~frsA~r~Lr~lhRaG  131 (365)
T PRK09188         91 GKDGLVRGWIEGVPLHLARPHGDPKWFRSAHRALRDLHRAG  131 (365)
T ss_pred             CCCCEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             76300101104752101699886799999999999999706


No 389
>KOG0665 consensus
Probab=89.13  E-value=0.21  Score=28.68  Aligned_cols=31  Identities=32%  Similarity=0.620  Sum_probs=26.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .|+||.||.|.|+++..+...-|.||+.+..
T Consensus       137 ~~IihRdLkPsnivv~~~~~lKi~dfg~ar~  167 (369)
T KOG0665         137 AGIIHRDLKPSNIVVNSDCTLKILDFGLART  167 (369)
T ss_pred             CCEEECCCCCCCCEECCHHHEEECCCHHHCC
T ss_conf             2514335676441414632056423011021


No 390
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=89.12  E-value=0.85  Score=24.78  Aligned_cols=41  Identities=17%  Similarity=0.389  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC-------EEEECCCCCC
Q ss_conf             99999998887652107774440223464225627960-------4873162135
Q gi|254780795|r  166 EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKI-------MGLIDFYFSC  213 (316)
Q Consensus       166 ~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i-------~giIDF~~~~  213 (316)
                      .+..-+.++.+       +++||+|+.+.|||.+...+       .-+-||+.+.
T Consensus       125 ~ia~gl~YLH~-------~~iiHRDlk~~NiLl~~~~~~~~~~~~vKi~DfG~s~  172 (274)
T cd05076         125 QLASALSYLED-------KNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSF  172 (274)
T ss_pred             HHHHHHHHHHH-------CCCCCCCCCHHHEEECCCCCCCCCCCCEEECCCCCCC
T ss_conf             99999999852-------8956776556445221335455667713742787663


No 391
>cd05077 PTK_Jak1_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=88.94  E-value=1.1  Score=24.00  Aligned_cols=41  Identities=20%  Similarity=0.451  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC-------EEEECCCCC
Q ss_conf             899999998887652107774440223464225627960-------487316213
Q gi|254780795|r  165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKI-------MGLIDFYFS  212 (316)
Q Consensus       165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i-------~giIDF~~~  212 (316)
                      ..+...+..+.+       +++||+|+.+.|||...+.+       .-+-||+.+
T Consensus       112 ~~ia~gl~yLH~-------~~iiHrDlk~~NiLl~~~~~~~~~~~~~KlsDfG~~  159 (262)
T cd05077         112 KQLASALSYLED-------KDLVHGNVCTKNILLAREGIDTEGGPFIKLSDPGIP  159 (262)
T ss_pred             HHHHHHHHHHHH-------CCCCCCCCCHHHEEEECCCCCCCCCCCEEECCCCCC
T ss_conf             999999999983-------994377434300788234555545773696158887


No 392
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=88.59  E-value=1  Score=24.20  Aligned_cols=66  Identities=17%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             CHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             800019899-----998643116888787889999988764188998999999-----999999999999999998
Q gi|254780795|r  215 DFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD  280 (316)
Q Consensus       215 ~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d  280 (316)
                      |.++||...     .+|.+|+.-..+-+-+++.+-=++|....+||++|++++     .-||+..+--|+|..+..
T Consensus         1 GT~~Fd~~~srkGY~LN~fc~sl~~~~nRe~F~ade~Ay~d~~~Lt~eqk~aV~~RD~~~ll~~Ggniyyl~Kl~a   76 (106)
T cd07925           1 GTTLFDGEMARKGYALNKMCFSFNDAANREAFLADEEAYCEKFGLTPEQKQAVRNRDVLRMLEAGGNIYYLAKLAG   76 (106)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9815678999860489999999777988999982999999876999999999997369999990663999999999


No 393
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=88.58  E-value=1  Score=24.22  Aligned_cols=66  Identities=18%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             CHHHCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             80001989-----9998643116888787889999988764188998999999-----999999999999999998
Q gi|254780795|r  215 DFLMYDLS-----ICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD  280 (316)
Q Consensus       215 ~~~i~DLA-----i~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d  280 (316)
                      |.++||.+     ..+|.+|+.-..+-+-+++.+-=++|....+||++|++++     ..||+..+--|+|..+..
T Consensus         1 GTy~Fd~~~srkGY~LN~fc~sl~~~~nRe~F~ade~Ay~d~~~Lt~eqk~aV~~RD~~~ll~~Ggniyyl~Kl~a   76 (106)
T cd07921           1 GTYVFDAERSRKGYALNKMCMSLNKAENREAFKADEEAYCDKFGLTEEQKQAVLDRDWLRLLELGGNIYYLLKLAA   76 (106)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9815688999750389999999777988999981999999876999999999997369999990663999999999


No 394
>KOG2345 consensus
Probab=88.30  E-value=0.58  Score=25.86  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=26.6

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCCCCHH
Q ss_conf             444022346422562796048731621356800
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL  217 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~  217 (316)
                      ...|+|+.|+|||+.+....-++||+-++-.+.
T Consensus       149 ~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i  181 (302)
T KOG2345         149 PYAHRDIKPANILLSDSGLPVLMDLGSATQAPI  181 (302)
T ss_pred             CCCCCCCCCCEEEECCCCCEEEEECCCCCCCCE
T ss_conf             310157773316744899647985367651556


No 395
>KOG0658 consensus
Probab=88.17  E-value=0.31  Score=27.58  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=23.6

Q ss_pred             CCEEECCCCCCCEEECCC-CCEEEECCCCC
Q ss_conf             744402234642256279-60487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~  212 (316)
                      .|+||.|+.|.|+|++.+ .+.-|=||+-|
T Consensus       144 ~~IcHRDIKPqNlLvD~~tg~LKicDFGSA  173 (364)
T KOG0658         144 HGICHRDIKPQNLLVDPDTGVLKICDFGSA  173 (364)
T ss_pred             CCCCCCCCCHHEEEECCCCCEEEECCCCCC
T ss_conf             582037787011888178884885267761


No 396
>PRK13377 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=87.98  E-value=1.1  Score=24.02  Aligned_cols=67  Identities=15%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             CCHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             6800019899-----998643116888787889999988764188998999999-----999999999999999998
Q gi|254780795|r  214 NDFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD  280 (316)
Q Consensus       214 ~~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d  280 (316)
                      -|..+||.+.     .+|.+|+.-..+-+-+++.+-=++|....+||++|+.++     -.||+..+--|+|..+..
T Consensus        11 PGTyvFd~~~srkGY~LN~fc~SL~~~~nRe~F~aDe~AY~d~~~Lteeqk~aV~~RD~~~li~lGgniyyl~Kl~a   87 (129)
T PRK13377         11 PGTTIFDADMSRKGYHLNQFCMSLMKAENRARFKADERAYLDEWPMTEEQKQAVLARDLNRCIALGGNIYFLAKIGA   87 (129)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99825799999873799999999767989999981999999876999999999997379999992673999999999


No 397
>KOG0663 consensus
Probab=87.93  E-value=1.6  Score=22.94  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=25.4

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC-CCHH
Q ss_conf             44402234642256279604873162135-6800
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC-NDFL  217 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~-~~~~  217 (316)
                      .++|.|+.++|+|..+..+.-|=||+-|. ++..
T Consensus       197 wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663         197 WILHRDLKTSNLLLSHKGILKIADFGLAREYGSP  230 (419)
T ss_pred             EEEECCCCHHHEEECCCCCEEECCCCCHHHHCCC
T ss_conf             0574256431222116884776143203432587


No 398
>cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which  play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=87.59  E-value=1.1  Score=23.93  Aligned_cols=67  Identities=15%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             CCHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             6800019899-----998643116888787889999988764188998999999-----999999999999999998
Q gi|254780795|r  214 NDFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD  280 (316)
Q Consensus       214 ~~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d  280 (316)
                      -|.++||.+.     .+|.+|+.-..+-+-+++.+-=++|....|||++|++++     --||+..+-=|+|..+..
T Consensus         8 PGTyvFd~~~srkGY~LN~fc~sL~~~~nRe~F~ade~Ay~d~~~Lteeqk~aV~~RD~~~li~lGgniyyl~Klaa   84 (121)
T cd07924           8 PGTYVFDAERARKGYHLNQFCMSLMKAENRERFKADERAYLDKWPMTEEQKQAVLARDYNRMLALGGNIYYLAKIGA   84 (121)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99814689999885799999999767988999983999999876999999999997479999992682999999999


No 399
>KOG0600 consensus
Probab=87.43  E-value=1  Score=24.21  Aligned_cols=31  Identities=29%  Similarity=0.562  Sum_probs=27.0

Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      -+|++|.|+...|+|.+++.+.-|=||+-|.
T Consensus       236 ~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600         236 SRGVLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             HCCEEECCCCCCCEEECCCCCEEECCCCCEE
T ss_conf             4583103465020678588977762444322


No 400
>PRK09897 hypothetical protein; Provisional
Probab=87.30  E-value=2.2  Score=22.06  Aligned_cols=16  Identities=19%  Similarity=0.318  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999752117851
Q gi|254780795|r  299 ILKTRFHKQISSISEY  314 (316)
Q Consensus       299 ~~~~~~~~~~~~~~~~  314 (316)
                      ..++|.|..++...+|
T Consensus       351 y~llrLhe~v~~iv~~  366 (535)
T PRK09897        351 YVILRLHEAVQEIVPH  366 (535)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999988888502210


No 401
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=87.21  E-value=1.3  Score=23.67  Aligned_cols=66  Identities=17%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             CHHHCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             80001989-----9998643116888787889999988764188998999999-----999999999999999998
Q gi|254780795|r  215 DFLMYDLS-----ICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD  280 (316)
Q Consensus       215 ~~~i~DLA-----i~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d  280 (316)
                      |.++||..     ..+|.+|+.-..+-+-+++.+-=++|....+||++|+.++     ..||+..+--|+|..+..
T Consensus        12 GTyvFd~~~srkGY~LN~fc~Sl~~~~nRe~F~ade~AY~d~~~Lteeqr~aV~~RD~~~ll~lGgniyyl~Klaa   87 (117)
T PRK13378         12 GTTIFDGEQARKGYALNKMCFSFNDAANRAAFLADEAAYCRKYGLNEEQKEAIRNRDVLQLLAAGGNAYYLAKFAG   87 (117)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9826799999873699999999667999999982999999876999999999997379999994674999999999


No 402
>KOG0584 consensus
Probab=87.15  E-value=0.57  Score=25.88  Aligned_cols=42  Identities=29%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC--CCEEEECCCCC
Q ss_conf             8999999988876521077744402234642256279--60487316213
Q gi|254780795|r  165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN--KIMGLIDFYFS  212 (316)
Q Consensus       165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~--~i~giIDF~~~  212 (316)
                      +.|..-+.++....|    - +||.|+..|||+++|+  +|. |=|.+-|
T Consensus       150 RQILkGL~yLHs~~P----P-IIHRDLKCDNIFinG~~G~VK-IGDLGLA  193 (632)
T KOG0584         150 RQILKGLVYLHSQDP----P-IIHRDLKCDNIFVNGNLGEVK-IGDLGLA  193 (632)
T ss_pred             HHHHHHHHHHHCCCC----C-CCCCCCCCCEEEECCCCCCEE-ECCHHHH
T ss_conf             999987666505799----8-211344353378707847456-4302689


No 403
>KOG1236 consensus
Probab=87.06  E-value=0.49  Score=26.32  Aligned_cols=75  Identities=27%  Similarity=0.338  Sum_probs=39.5

Q ss_pred             CEEECCCCCCCEEEC----CCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------C
Q ss_conf             444022346422562----796048731621356800019899998643116888787889999988764---------1
Q gi|254780795|r  185 GIIHADLFPDNVLFY----NNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNK---------V  251 (316)
Q Consensus       185 g~IHgDl~~~NiL~~----~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~---------v  251 (316)
                      .++|+|+||+||+..    .+...|++|=+-+  +..--+|     .||....  .|.......+-+|.-         +
T Consensus       365 NFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~--~~i~~~L-----~~~~~e~--~d~~~~~~~~~~~~P~lvflDtGiv  435 (565)
T KOG1236         365 NFVHADLHPGNVLIRFNKTEDNLRGVHKAEKA--SAIKRGL-----EWFRSEV--RDARFTDSPDLEYEPTLVFLDTGIV  435 (565)
T ss_pred             CCEECCCCCCCEEEEECCCCCCCCCCCCCHHH--HHHHHHH-----HHHHHHH--HHHHHHCCCCCCCCCEEEEECCHHH
T ss_conf             00112457774799854787543333220356--6776435-----6545566--5333212653468874999523054


Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             88998999999999999
Q gi|254780795|r  252 RKISENELQSLPTLLRG  268 (316)
Q Consensus       252 rpLs~~E~~~l~~ll~~  268 (316)
                      -.|++.-...+-.+-++
T Consensus       436 ~kLs~qn~~N~l~lF~a  452 (565)
T KOG1236         436 TKLSHQNQMNLLSLFRA  452 (565)
T ss_pred             HCCCHHHHHHHHHHHHH
T ss_conf             40471418879999999


No 404
>cd05104 PTKc_Kit Catalytic Domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=86.60  E-value=0.46  Score=26.50  Aligned_cols=30  Identities=30%  Similarity=0.480  Sum_probs=26.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++||.|+-..|||+..+.+.-|=||+-+.
T Consensus       233 ~~~iHrDLaaRNvlv~~~~~~Ki~DFGlsr  262 (375)
T cd05104         233 KNCIHRDLAARNILLTHGRITKICDFGLAR  262 (375)
T ss_pred             CCCCCCCCCCCCEEECCCCCEEECCCCCCE
T ss_conf             890436157462566699918979762212


No 405
>KOG0193 consensus
Probab=86.39  E-value=0.92  Score=24.56  Aligned_cols=31  Identities=29%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCCCC
Q ss_conf             74440223464225627-960487316213568
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCND  215 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~  215 (316)
                      +.+||-||...||+.++ ++|. |=||+-+..-
T Consensus       507 K~IIHrDLKSnNIFl~~~~kVk-IgDFGLatvk  538 (678)
T KOG0193         507 KNIIHRDLKSNNIFLHEDLKVK-IGDFGLATVK  538 (678)
T ss_pred             HHHHHHHCCCCCEEECCCCCEE-EECCCCEEEE
T ss_conf             3144311022646870588489-8313204542


No 406
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=86.32  E-value=0.39  Score=26.94  Aligned_cols=30  Identities=33%  Similarity=0.476  Sum_probs=25.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ++++|.|+.+.|||.+.+.+.-+-||+.+-
T Consensus       188 ~~IlHRDLK~~NIfL~~~G~IKLGDFGiSK  217 (478)
T PTZ00267        188 RKMMHRDLKSANIFLMPTGIIKLGDFGFSK  217 (478)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEECCCCCCE
T ss_conf             793316576888567689988873563322


No 407
>KOG3653 consensus
Probab=86.25  E-value=1.2  Score=23.81  Aligned_cols=88  Identities=19%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHHCCCCCHHHHH
Q ss_conf             7744402234642256279604873162135680001989999864311688878788--99999887641889989999
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR--GFSILNGYNKVRKISENELQ  260 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~--~~~~l~gY~~vrpLs~~E~~  260 (316)
                      ..++.|.|+...|||++.|--..|=||+.|-.=..-..-.-+++     .-|+   .+  +-.+|+|=-..+.  +.-.+
T Consensus       334 Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~-----qVGT---~RYMAPEvLEgainl~d--~~Afk  403 (534)
T KOG3653         334 KPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHG-----QVGT---RRYMAPEVLEGAINLQD--RDAFK  403 (534)
T ss_pred             CCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCCCCCCCHHH-----HHHH---HHHCCHHHHHHHCCCCC--HHHHH
T ss_conf             98633345553536880577478622540477458988761132-----2213---32038888730214666--77888


Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf             99999999999999--99999876
Q gi|254780795|r  261 SLPTLLRGAALRFF--LTRLYDSQ  282 (316)
Q Consensus       261 ~l~~ll~~aalRf~--lsrl~d~~  282 (316)
                      .+-++.-  +|=+|  +||--|..
T Consensus       404 r~DvYam--gLVLWEi~SRC~~~~  425 (534)
T KOG3653         404 RIDVYAM--GLVLWEIASRCTDAD  425 (534)
T ss_pred             HHHHHHH--HHHHHHHHHHCCCCC
T ss_conf             8779999--999999986153246


No 408
>KOG0668 consensus
Probab=85.44  E-value=0.86  Score=24.73  Aligned_cols=30  Identities=37%  Similarity=0.629  Sum_probs=24.7

Q ss_pred             CCCEEECCCCCCCEEECC--CCCEEEECCCCCC
Q ss_conf             774440223464225627--9604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN--NKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~  213 (316)
                      .+|++|.|..|.||+.+.  .++ -+|||+-|.
T Consensus       150 S~GImHRDVKPhNvmIdh~~rkL-rlIDWGLAE  181 (338)
T KOG0668         150 SMGIMHRDVKPHNVMIDHELRKL-RLIDWGLAE  181 (338)
T ss_pred             HCCCCCCCCCCCEEEECHHHCEE-EEEECCHHH
T ss_conf             51701156774203444334403-445433486


No 409
>KOG0671 consensus
Probab=85.38  E-value=2.5  Score=21.75  Aligned_cols=32  Identities=38%  Similarity=0.568  Sum_probs=24.0

Q ss_pred             CEEECCCCCCCEEECCC---------------------CCEEEECCCCCCCCHH
Q ss_conf             44402234642256279---------------------6048731621356800
Q gi|254780795|r  185 GIIHADLFPDNVLFYNN---------------------KIMGLIDFYFSCNDFL  217 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~---------------------~i~giIDF~~~~~~~~  217 (316)
                      +++|-|+.|.||||-..                     .| -||||+-|..+..
T Consensus       212 kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I-~vIDFGsAtf~~e  264 (415)
T KOG0671         212 KLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAI-KVIDFGSATFDHE  264 (415)
T ss_pred             CEEECCCCHHHEEEECCCEEEEECCCCCCCEECCCCCCCE-EEEECCCCCCCCC
T ss_conf             6035378710078852532787526775210015677645-8885487521046


No 410
>KOG1163 consensus
Probab=84.78  E-value=3  Score=21.21  Aligned_cols=143  Identities=17%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             CCCEEEEEECCCCCEEEEEEEE-ECCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             9860531004668120017999-439958-99982166998899999999999853267755510010267787522451
Q gi|254780795|r   21 IGQLNSVQPIIHGVENSNFVIQ-TSKGTF-ILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP   98 (316)
Q Consensus        21 lg~~~~~~~i~~G~~Ntny~v~-t~~~~y-iLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~   98 (316)
                      .|+..-++.|..|+--.-|.-. ..+|+- .+|+=.++....+|.+|-.+-..|+. |+-.|...      .+.+-+.-.
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~-g~GiP~i~------~y~~e~~yn   86 (341)
T KOG1163          14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQG-GVGIPHIR------HYGTEKDYN   86 (341)
T ss_pred             CCCEEEEEEECCCCHHHHEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCC-CCCCCHHH------HHCCCCCCC
T ss_conf             04279998616885323102210267866999971255788630678999998626-89983121------113445555


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55786478870768998999999998643675306875433231124564576675200155227889999999888765
Q gi|254780795|r   99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW  178 (316)
Q Consensus        99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  178 (316)
                      +.+|.-+.      |+.+.+..+         +++.|...                       ...-+.++.+..++-. 
T Consensus        87 vlVMdLLG------PsLEdLfnf---------C~R~ftmk-----------------------TvLMLaDQml~RiEyv-  127 (341)
T KOG1163          87 VLVMDLLG------PSLEDLFNF---------CSRRFTMK-----------------------TVLMLADQMLSRIEYV-  127 (341)
T ss_pred             EEEEHHCC------CCHHHHHHH---------HHHHHHHH-----------------------HHHHHHHHHHHHHHHH-
T ss_conf             55410218------539999998---------75301478-----------------------6999999999999999-


Q ss_pred             HHCCCCCEEECCCCCCCEEEC----CCCCEEEECCCCCC
Q ss_conf             210777444022346422562----79604873162135
Q gi|254780795|r  179 PKNLPTGIIHADLFPDNVLFY----NNKIMGLIDFYFSC  213 (316)
Q Consensus       179 ~~~Lp~g~IHgDl~~~NiL~~----~~~i~giIDF~~~~  213 (316)
                        + .+++||.|..|||.|.-    -+++. +|||+-+-
T Consensus       128 --H-~r~fiHRDIKPdNFLMGlgrh~~kl~-LIDFGLaK  162 (341)
T KOG1163         128 --H-LRNFIHRDIKPDNFLMGLGRHCNKLY-LIDFGLAK  162 (341)
T ss_pred             --H-HHCCCCCCCCCCCEEECCCCCCCEEE-EEECCCHH
T ss_conf             --8-72410056784200231222455489-99624123


No 411
>KOG1006 consensus
Probab=84.52  E-value=0.76  Score=25.07  Aligned_cols=42  Identities=31%  Similarity=0.531  Sum_probs=29.2

Q ss_pred             CEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHH
Q ss_conf             4440223464225627-96048731621356800019899998643
Q gi|254780795|r  185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWC  229 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c  229 (316)
                      -+||.|..|+|||.+. +.|. +-||+-|+.  ++--+|.+.-+-|
T Consensus       188 kiIHRDvKPSNILldr~G~vK-LCDFGIcGq--Lv~SiAkT~daGC  230 (361)
T KOG1006         188 KIIHRDVKPSNILLDRHGDVK-LCDFGICGQ--LVDSIAKTVDAGC  230 (361)
T ss_pred             HHHHCCCCHHHEEEECCCCEE-EECCCCHHH--HHHHHHHHHCCCC
T ss_conf             565045772126770679876-515633076--7777776403687


No 412
>KOG1027 consensus
Probab=84.48  E-value=0.67  Score=25.46  Aligned_cols=30  Identities=37%  Similarity=0.500  Sum_probs=23.1

Q ss_pred             CCEEECCCCCCCEEECC----CCCEEEE-CCCCCC
Q ss_conf             74440223464225627----9604873-162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN----NKIMGLI-DFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~----~~i~giI-DF~~~~  213 (316)
                      .+++|.|+.|.|||+..    +++.+.| ||+-|-
T Consensus       625 l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsK  659 (903)
T KOG1027         625 LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSK  659 (903)
T ss_pred             CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCC
T ss_conf             25210467873489971478862568960465201


No 413
>PRK00029 hypothetical protein; Validated
Probab=84.37  E-value=3.1  Score=21.09  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=19.4

Q ss_pred             CCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             77744402234642256279604873162135
Q gi|254780795|r  182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..-|+|||=+|.||+-+.|..    ||++=|+
T Consensus       241 ~~vGFvHGVmNTDNmsI~GeT----iDYGP~a  268 (487)
T PRK00029        241 QAVGFVHGVMNTDNMSILGET----FDYGPYG  268 (487)
T ss_pred             HHHCCCCCCCCCCCCEEEEEE----CCCCCCH
T ss_conf             986220451236886001342----3677601


No 414
>KOG0666 consensus
Probab=84.29  E-value=1.5  Score=23.16  Aligned_cols=146  Identities=17%  Similarity=0.262  Sum_probs=73.8

Q ss_pred             HHHHHCCCCCEEEEEECCCCCEEEEEEEE-ECC-----CCEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99984899860531004668120017999-439-----9589998216699----8899999999999853267755510
Q gi|254780795|r   14 SFVQEYAIGQLNSVQPIIHGVENSNFVIQ-TSK-----GTFILTIYEKRMN----EKDLPVFIELLHYISRNKLPCPIPI   83 (316)
Q Consensus        14 ~il~~y~lg~~~~~~~i~~G~~Ntny~v~-t~~-----~~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gipvP~pi   83 (316)
                      +.|..|++     +..|..|.--..|+-. ++.     ..|.+|.|+...+    ..-.-.|+.|+..|+..++-+-.  
T Consensus        21 e~l~~ye~-----ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv--   93 (438)
T KOG0666          21 EDLFEYEG-----IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLV--   93 (438)
T ss_pred             HHHHHHHC-----CCEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHH--
T ss_conf             88876303-----23124665412566200568753321668988725567787189999999999875287610066--


Q ss_pred             CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             01026778752245155786478870768998999999998643675306875433231124564576675200155227
Q gi|254780795|r   84 PRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL  163 (316)
Q Consensus        84 ~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~  163 (316)
                           +.+.+.+.+-+.+++|.|-         ++.+    +-++|..+++-..++                     .-.
T Consensus        94 -----~Vfl~~d~~v~l~fdYAEh---------DL~~----II~fHr~~~~~~lp~---------------------~mv  134 (438)
T KOG0666          94 -----KVFLSHDKKVWLLFDYAEH---------DLWH----IIKFHRASKAKQLPR---------------------SMV  134 (438)
T ss_pred             -----HHHHCCCCEEEEEEHHHHH---------HHHH----HHHHHCCCHHCCCCH---------------------HHH
T ss_conf             -----7762267449998214440---------6999----998742310023888---------------------899


Q ss_pred             HHHH---HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCC
Q ss_conf             8899---9999988876521077744402234642256279-----604873162135
Q gi|254780795|r  164 KKEI---DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSC  213 (316)
Q Consensus       164 ~~~l---~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~  213 (316)
                      ++.+   .+-+..+.++|       ++|.|+.|.|||+-++     +| -|=|++.+.
T Consensus       135 KsilwQil~Gv~YLH~NW-------vlHRDLKPaNIlvmgdgperG~V-KIaDlGlaR  184 (438)
T KOG0666         135 KSILWQILDGVHYLHSNW-------VLHRDLKPANILVMGDGPERGRV-KIADLGLAR  184 (438)
T ss_pred             HHHHHHHHHHHHHHHHCC-------EEECCCCCCEEEEECCCCCCCEE-EEECCCHHH
T ss_conf             999999973367876320-------11336771107995357766726-861311788


No 415
>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]
Probab=83.82  E-value=0.58  Score=25.86  Aligned_cols=67  Identities=24%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             EEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH---H--HHHHCCCCC--CCHHH-HHHHHHH-HHHCCCCCH
Q ss_conf             4402234642256279604873162135680001989999---8--643116888--78788-9999988-764188998
Q gi|254780795|r  186 IIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI---N--AWCFDENNT--YNPSR-GFSILNG-YNKVRKISE  256 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i---~--~~c~~~~~~--~d~~~-~~~~l~g-Y~~vrpLs~  256 (316)
                      +=|.|++.+|+|.++++|+ +|||-.|...+   +=+++.   +  -|.|...+.  |+.-+ ++.++.| ..+-.|.|.
T Consensus       343 fehrnlt~~niLId~Gnvt-LIDfklsRl~~---~q~~isy~rldhp~lF~G~dd~QFeIYrlMr~l~~g~wa~F~P~TN  418 (488)
T COG5072         343 FEHRNLTLDNILIDEGNVT-LIDFKLSRLSY---SQGIISYNRLDHPDLFNGVDDYQFEIYRLMRRLLKGRWAQFEPITN  418 (488)
T ss_pred             CCCCCCCCCCEEEECCCEE-EEEEEEEECCC---CCCEEECCCCCCHHHHCCCCCEEEEHHHHHHHHHCCCHHHCCCCHH
T ss_conf             6324565332234058548-99866530246---8760210025765663676634564999999982574776000214


No 416
>KOG0197 consensus
Probab=83.55  E-value=1.5  Score=23.13  Aligned_cols=78  Identities=23%  Similarity=0.290  Sum_probs=47.0

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC---CHH-HC---CHHH------HHHH---------HHH-----------
Q ss_conf             7444022346422562796048731621356---800-01---9899------9986---------431-----------
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN---DFL-MY---DLSI------CINA---------WCF-----------  230 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~---~~~-i~---DLAi------~i~~---------~c~-----------  230 (316)
                      +++||.||-.-|||++++.+.-|=||+-|-.   +.+ .-   ++-|      |+++         |.|           
T Consensus       322 ~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G  401 (468)
T KOG0197         322 KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYG  401 (468)
T ss_pred             CCCCCHHHHHHHEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHCCCCCCCCEEEHHHHHHHHHCCC
T ss_conf             78122003466556456866987466355215887146337887871135887874387510154221244677776058


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHCCC-CCHHHHHH
Q ss_conf             --16888787889999988764188-99899999
Q gi|254780795|r  231 --DENNTYNPSRGFSILNGYNKVRK-ISENELQS  261 (316)
Q Consensus       231 --~~~~~~d~~~~~~~l~gY~~vrp-Ls~~E~~~  261 (316)
                        -..+.-+.+-.+.+=+||.=-|| +-++|+-.
T Consensus       402 ~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~  435 (468)
T KOG0197         402 RVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYE  435 (468)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             8899997789999998666768999999989999


No 417
>KOG0586 consensus
Probab=83.36  E-value=1.5  Score=23.16  Aligned_cols=30  Identities=37%  Similarity=0.576  Sum_probs=24.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+||.||+..|+|.+.+...-|=||+++.
T Consensus       174 k~ivHrdLk~eNilL~~~mnikIaDfgfS~  203 (596)
T KOG0586         174 KNIVHRDLKAENILLDENMNIKIADFGFST  203 (596)
T ss_pred             CCEECCCCCHHHCCCCCCCCEEEECCCCCE
T ss_conf             144346553654244554551451244310


No 418
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=82.33  E-value=3.3  Score=20.92  Aligned_cols=45  Identities=16%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCC--CCCCHHH
Q ss_conf             17999439958999821669988999999999998532-6775551--0010267
Q gi|254780795|r   38 NFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIP--IPRNDGK   89 (316)
Q Consensus        38 ny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~p--i~~~~G~   89 (316)
                      -.+|+|++|-.|+|..-.  ...+  .+   ...|+.. |+|+|+.  ++..+++
T Consensus        15 ~~Fv~s~~g~iVvK~s~t--ia~E--~y---~~~L~~~Lgv~~Pq~R~l~~~s~E   62 (238)
T cd05124          15 ALFVESESGAIVVKSSPN--IASE--YF---LSKLAKILGLPIPQMRVLEWNSSE   62 (238)
T ss_pred             EEEEECCCCEEEEECCCC--HHHH--HH---HHHHHHHHCCCCCCEEEECCCCHH
T ss_conf             899975886799973773--5799--99---999999859999825865056878


No 419
>KOG0661 consensus
Probab=82.28  E-value=2.4  Score=21.86  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC---CHHHCCHHHHHHHHHH-----C--
Q ss_conf             27889999999888765210777444022346422562796048731621356---8000198999986431-----1--
Q gi|254780795|r  162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN---DFLMYDLSICINAWCF-----D--  231 (316)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~---~~~i~DLAi~i~~~c~-----~--  231 (316)
                      .++..+.+.+.-+... .   ..|+-|.|+.|.|+|+.++.+.-|=||+-|..   .+..-|-.-  .-|-.     -  
T Consensus       111 ~irnim~QilqGL~hi-H---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVS--TRWYRAPEvLLrs  184 (538)
T KOG0661         111 DIRNIMYQILQGLAHI-H---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVS--TRWYRAPEVLLRS  184 (538)
T ss_pred             HHHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHEEECCCCEEEECCCCCCCCCCCCCCCCHHHH--CCCCCCHHHHHHC
T ss_conf             9999999999888899-8---62853256875446753644367503443222346898402320--2101361776423


Q ss_pred             --CCCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHH
Q ss_conf             --68887878899999887641889--989999999999
Q gi|254780795|r  232 --ENNTYNPSRGFSILNGYNKVRKI--SENELQSLPTLL  266 (316)
Q Consensus       232 --~~~~~d~~~~~~~l~gY~~vrpL--s~~E~~~l~~ll  266 (316)
                        .....|.=-+..++.---+.|||  -..|.+.|+-+|
T Consensus       185 ~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc  223 (538)
T KOG0661         185 GYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKIC  223 (538)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             665772278988889999987046689971789999999


No 420
>KOG0664 consensus
Probab=82.01  E-value=0.8  Score=24.96  Aligned_cols=31  Identities=32%  Similarity=0.558  Sum_probs=27.6

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .++.|.|..|+|+|++.|.|.-|-||+-+..
T Consensus       175 A~ILHRDIKPGNLLVNSNCvLKICDFGLARv  205 (449)
T KOG0664         175 ANILHRDIKPGNLLVNSNCILKICDFGLART  205 (449)
T ss_pred             CCHHHCCCCCCCEEECCCCEEEECCCCCCCC
T ss_conf             1233236787637761673588525543210


No 421
>KOG0694 consensus
Probab=82.00  E-value=3.1  Score=21.18  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHH
Q ss_conf             74440223464225627-9604873162135680001989
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLS  222 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLA  222 (316)
                      .|+|+.|+..||||.+. +.+. |.||+.|--+..--|-+
T Consensus       487 ~~IIYRDlKLdNiLLD~eGh~k-iADFGlcKe~m~~g~~T  525 (694)
T KOG0694         487 NGIIYRDLKLDNLLLDTEGHVK-IADFGLCKEGMGQGDRT  525 (694)
T ss_pred             CCCEEEECCHHHEEECCCCCEE-ECCCCCCCCCCCCCCCC
T ss_conf             6806641333225776667677-50145331457888740


No 422
>PRK13379 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=81.62  E-value=3.6  Score=20.70  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=45.2

Q ss_pred             CCHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHH
Q ss_conf             6800019899-----998643116888787889999988764188998999999-----99999999999999999
Q gi|254780795|r  214 NDFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLY  279 (316)
Q Consensus       214 ~~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~  279 (316)
                      -|.++||...     .+|-+|+.-..+-+-+++.+==++|....+||++|+.++     -.||+..+-=|+|.-+.
T Consensus        12 pGTy~Fd~~~srkgY~LN~fc~sl~~~~~Re~F~aDe~Ay~d~~~LTeEqk~aV~~RDw~~li~~Ggniy~L~Kla   87 (119)
T PRK13379         12 GGTYVFDLRTSNRALRINRFFWHMIRAPWRDRFLQDAEALMQEADLTEQEKELIRARDWLGLVQYGANFFVIEKFA   87 (119)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             9980268999988568999999967788899998399999977599999999999615999998476399999999


No 423
>KOG0577 consensus
Probab=80.90  E-value=4.2  Score=20.25  Aligned_cols=155  Identities=19%  Similarity=0.251  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHCCCCCE-EEEEECCCCCEEEEEEEEECCCCEEEEE----ECCC-CC--HHHHHHHHHHHHHHHHCCCC
Q ss_conf             899999999984899860-5310046681200179994399589998----2166-99--88999999999998532677
Q gi|254780795|r    7 PPQKEIQSFVQEYAIGQL-NSVQPIIHGVENSNFVIQTSKGTFILTI----YEKR-MN--EKDLPVFIELLHYISRNKLP   78 (316)
Q Consensus         7 ls~~el~~il~~y~lg~~-~~~~~i~~G~~Ntny~v~t~~~~yiLri----~e~~-~~--~~~l~~~~~ll~~L~~~gip   78 (316)
                      |-..+|..++..-|-.++ ..++.|.+|.---.|+-....+.=|+-|    |... ..  -.+|--++.+|+.|     .
T Consensus        10 lKDPeiA~LF~k~DPEklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l-----~   84 (948)
T KOG0577          10 LKDPEIADLFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQL-----R   84 (948)
T ss_pred             CCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-----C
T ss_conf             78806999872489899988899844786432677541575503444112555522078999999999999961-----5


Q ss_pred             CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             55510010267787522451557864788707689989999999986436753068754332311245645766752001
Q gi|254780795|r   79 CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDK  158 (316)
Q Consensus        79 vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~  158 (316)
                      -|..|--+ |.++.+.  ..|.||+|+=|..      .       -|-..|+.         +                 
T Consensus        85 HPntieYk-gCyLre~--TaWLVMEYClGSA------s-------DlleVhkK---------p-----------------  122 (948)
T KOG0577          85 HPNTIEYK-GCYLREH--TAWLVMEYCLGSA------S-------DLLEVHKK---------P-----------------  122 (948)
T ss_pred             CCCCCCCC-CEEECCC--HHHHHHHHHHCCH------H-------HHHHHHHC---------C-----------------
T ss_conf             98721202-1123120--4889999871447------8-------89999755---------5-----------------


Q ss_pred             CCHHHHHHH-H---HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf             552278899-9---99998887652107774440223464225627960487316213568
Q gi|254780795|r  159 VDEDLKKEI-D---HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCND  215 (316)
Q Consensus       159 ~~~~~~~~l-~---~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~  215 (316)
                      +.+.....| .   .-+.++.+       .+.||.|...+|||..+..++-+-||+-|..-
T Consensus       123 lqEvEIAAi~~gaL~gLaYLHS-------~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~  176 (948)
T KOG0577         123 LQEVEIAAITHGALQGLAYLHS-------HNRIHRDIKAGNILLSEPGLVKLADFGSASIM  176 (948)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCCCEEECCCCEEEECCCCCHHHC
T ss_conf             1278999999888889999987-------54776311136367437772552235514541


No 424
>pfam07387 Seadorna_VP7 Seadornavirus VP7. This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length. The function of this family is unknown. However, it appears to be distantly related to protein kinases.
Probab=77.57  E-value=3.8  Score=20.53  Aligned_cols=85  Identities=20%  Similarity=0.247  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             99999999864367530687543323112456457667520015522788999999988876521077744402234642
Q gi|254780795|r  116 IHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDN  195 (316)
Q Consensus       116 ~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~N  195 (316)
                      ...+-==+.+|+||-+.+=-     |. .....--.++++.+. .......+..-++.+......  ..+.+|||.+|+|
T Consensus       103 ~~y~nKy~vfArmhGilrLk-----ND-n~y~yGvIlE~Cy~i-~i~~~N~I~aglk~Lm~fH~e--~~~~lHGDcnp~n  173 (308)
T pfam07387       103 ALYFNKYRVFARMHGILRLK-----ND-NNYNYGIILEKCYKI-RINFSNFITAGLKDLMDFHSE--SGGTLHGDCNPQN  173 (308)
T ss_pred             HHHHHHHHHHHHHHHEEEEE-----CC-CCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHCC--CCCEECCCCCHHH
T ss_conf             56520577888753204750-----47-883257886421464-200478899878899986246--8971336778777


Q ss_pred             EEECCCCCEEEECC
Q ss_conf             25627960487316
Q gi|254780795|r  196 VLFYNNKIMGLIDF  209 (316)
Q Consensus       196 iL~~~~~i~giIDF  209 (316)
                      ++.+++.-.-+.|=
T Consensus       174 iMcDk~G~lKlVDP  187 (308)
T pfam07387       174 LMCDKNGYLKLVDP  187 (308)
T ss_pred             EEECCCCCEEECCH
T ss_conf             53468897786074


No 425
>KOG0588 consensus
Probab=76.61  E-value=2.8  Score=21.39  Aligned_cols=29  Identities=38%  Similarity=0.558  Sum_probs=21.4

Q ss_pred             CCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             74440223464225627-9604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      .++||.|+.|-|+|.+. ++|. |=||+.|.
T Consensus       131 ~~icHRDLKpENlLLd~~~nIK-IADFGMAs  160 (786)
T KOG0588         131 FNICHRDLKPENLLLDVKNNIK-IADFGMAS  160 (786)
T ss_pred             HCCEECCCCCHHHHHHCCCCEE-EECCCEEE
T ss_conf             0502145772443220226776-54043241


No 426
>pfam02696 UPF0061 Uncharacterized ACR, YdiU/UPF0061 family.
Probab=76.38  E-value=5.5  Score=19.51  Aligned_cols=121  Identities=14%  Similarity=0.107  Sum_probs=52.4

Q ss_pred             HHHHHCCCCCCCCCCCC-HHHH-HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH--HHHHH--HHHCCCCCCCCCCCC
Q ss_conf             99853267755510010-2677-875224515578647887076899899999999--86436--753068754332311
Q gi|254780795|r   70 HYISRNKLPCPIPIPRN-DGKL-YGFLCKKPANIFSFIKGSPLNHISDIHCEEIGS--MLASM--HQKTKNFHLYRKNTL  143 (316)
Q Consensus        70 ~~L~~~gipvP~pi~~~-~G~~-~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~--~La~l--H~~~~~f~~~r~~~~  143 (316)
                      +.++.=|||..+.+.-. .|+. +..-.-.|++++.++.-.|++--+-+.+..-++  .|.+|  |.+..-|+.-     
T Consensus       142 Eam~~LGIpTTRaLslv~tge~~v~r~~~epgAvl~RvA~ShiR~GtFe~~~~~~~~~~l~~L~dy~I~~~yp~~-----  216 (487)
T pfam02696       142 EALHRLGIPTTRALSLVETGDSLWRRDEPEPAAVMIRFAPSHIRFGTFERFHYRHQTEQIAQLLDHVIVTYYPEV-----  216 (487)
T ss_pred             HHHHHCCCCCCCEEEEEECCCCEEECCCCCCCEEEEEECCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-----
T ss_conf             999874998632258995488503657745531688741553021017998871899999999999998848542-----


Q ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCC
Q ss_conf             2456457667520015--522788999999988876521077744402234642256279604873162
Q gi|254780795|r  144 SPLNLKFLWAKCFDKV--DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFY  210 (316)
Q Consensus       144 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~  210 (316)
                              .....+..  ...+.+++.+..+.+...|   ...|+|||=+|.||+-+.|..    ||++
T Consensus       217 --------~~~~~~~~~~y~~~~~~Vv~rtA~LVA~W---q~vGFvHGVMNTDNmSI~GeT----IDYG  270 (487)
T pfam02696       217 --------SGSNSDDEDKYIAFFRVVVERVAKLVAQW---QAAGFAHGVLNTDNMSITGLT----FDYG  270 (487)
T ss_pred             --------CCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCEECCCCCEECCEE----CCCC
T ss_conf             --------01256643699999999999999999999---976010020026783423402----2666


No 427
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and 
Probab=76.29  E-value=4.9  Score=19.84  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=38.5

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCC-CCCHH-----------HC--CHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHH
Q ss_conf             40223464225627-960487316213-56800-----------01--98999986431168887878899-99988764
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CNDFL-----------MY--DLSICINAWCFDENNTYNPSRGF-SILNGYNK  250 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~~~~-----------i~--DLAi~i~~~c~~~~~~~d~~~~~-~~l~gY~~  250 (316)
                      ==||=|.||+|+++ |++- -|||++. +.++-           .+  |.+..+.....+..+.-.-.+++ -...||..
T Consensus       214 gIgDRHndNIml~~~Ghlf-HIDFG~iLg~~p~~~g~~rE~~PFklt~e~~~v~~~g~~~~~~s~~f~~F~~lc~~ay~~  292 (366)
T cd05175         214 GIGDRHNSNIMVKDDGQLF-HIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLA  292 (366)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEECHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             2466678845798999899-986126536698888978789997407999999727887777658799999999999999


Q ss_pred             CCCCCHHHHHHHHHH
Q ss_conf             188998999999999
Q gi|254780795|r  251 VRKISENELQSLPTL  265 (316)
Q Consensus       251 vrpLs~~E~~~l~~l  265 (316)
                      +|+=+..=+..+-.|
T Consensus       293 lRk~~~lilnLf~LM  307 (366)
T cd05175         293 IRQHANLFINLFSMM  307 (366)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999899999999998


No 428
>pfam07746 LigA Aromatic-ring-opening dioxygenase LigAB, LigA subunit. This is a family of aromatic ring opening dioxygenases which catalyse the ring-opening reaction of protocatechuate and related compounds.
Probab=76.03  E-value=2.9  Score=21.28  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf             8643116888787889999988764188998999999-----9999999999999999987
Q gi|254780795|r  226 NAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYDS  281 (316)
Q Consensus       226 ~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d~  281 (316)
                      |-+|+.-..+-+.+++.+=-++|.+..+||++|+.++     ..|++..+-.|+|..+...
T Consensus         2 N~f~~sl~~~~~R~~F~~D~eay~~~~~Lt~eqr~av~~rD~~~L~~~G~n~y~l~Kl~~~   62 (88)
T pfam07746         2 NKFCMSLIKAENRERFLADEEAYLDEYGLTEEQKAAVRARDWNGLIALGGNFYYLAKLAAV   62 (88)
T ss_pred             HHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             1789987879999999839999987279999999999826699999945859999999998


No 429
>KOG4236 consensus
Probab=75.66  E-value=6  Score=19.26  Aligned_cols=29  Identities=41%  Similarity=0.695  Sum_probs=23.8

Q ss_pred             CCEEECCCCCCCEEECC----CCCEEEECCCCCC
Q ss_conf             74440223464225627----9604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYN----NKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~----~~i~giIDF~~~~  213 (316)
                      +++.|.|+.|.|||...    .++. +-||++|.
T Consensus       683 knIvHCDLKPENVLLas~~~FPQvK-lCDFGfAR  715 (888)
T KOG4236         683 KNIVHCDLKPENVLLASASPFPQVK-LCDFGFAR  715 (888)
T ss_pred             CCEEECCCCCHHEEECCCCCCCCEE-ECCCCCEE
T ss_conf             5652115770224422579987413-40454002


No 430
>KOG0669 consensus
Probab=75.16  E-value=3  Score=21.23  Aligned_cols=28  Identities=36%  Similarity=0.562  Sum_probs=25.4

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             4440223464225627960487316213
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      -++|.|+.+.|||.+++.+.-+-||+.+
T Consensus       144 kilHRDmKaaNvLIt~dgilklADFGla  171 (376)
T KOG0669         144 KILHRDMKAANVLITKDGILKLADFGLA  171 (376)
T ss_pred             HHHHHCCCHHHEEECCCCEEEEECCCCC
T ss_conf             6765003475478737863886024443


No 431
>KOG0590 consensus
Probab=74.94  E-value=1.9  Score=22.58  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=27.3

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC
Q ss_conf             744402234642256279604873162135680001
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY  219 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~  219 (316)
                      .|+.|-|+.++|+++..+.+.-++||+-+...-..+
T Consensus       439 ~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~  474 (601)
T KOG0590         439 MGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPW  474 (601)
T ss_pred             CCCHHHHCCCCCEEEECCCEEEEEECCCHHHCCCCC
T ss_conf             284164377654688637705553057614216675


No 432
>KOG4717 consensus
Probab=74.57  E-value=6.1  Score=19.24  Aligned_cols=28  Identities=43%  Similarity=0.708  Sum_probs=20.5

Q ss_pred             CEEECCCCCCCEEE-CCCCCEEEECCCCC
Q ss_conf             44402234642256-27960487316213
Q gi|254780795|r  185 GIIHADLFPDNVLF-YNNKIMGLIDFYFS  212 (316)
Q Consensus       185 g~IHgDl~~~NiL~-~~~~i~giIDF~~~  212 (316)
                      .++|.|+.|.||.| ++-.++-+-||+|+
T Consensus       138 HVVHRDLKPENVVFFEKlGlVKLTDFGFS  166 (864)
T KOG4717         138 HVVHRDLKPENVVFFEKLGLVKLTDFGFS  166 (864)
T ss_pred             HHEECCCCCCEEEEEEECCCEEEECCCCC
T ss_conf             40003478530577651380574003545


No 433
>KOG4530 consensus
Probab=73.69  E-value=6.8  Score=18.94  Aligned_cols=55  Identities=24%  Similarity=0.284  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             2677555100102677875224515578647887076899899999999864367530
Q gi|254780795|r   75 NKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT  132 (316)
Q Consensus        75 ~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~  132 (316)
                      -++-+|.|+++.-...++++.|||+.+.+|=  .+--.-...|++++|..| +||.+.
T Consensus        97 YN~gypA~LKNAlD~lyheW~gKPalivSyG--GhGGg~c~~qL~~v~~fL-km~vai  151 (199)
T KOG4530          97 YNFGYPAPLKNALDWLYHEWAGKPALIVSYG--GHGGGRCQYQLRQVGVFL-KMHVAI  151 (199)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCHHHHHHHHHHHHH-EEEEEC
T ss_conf             3677766777788876301059965999736--878732799999987551-001313


No 434
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=73.18  E-value=7  Score=18.86  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=40.1

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCCC-C-----------HHH--CCHHHHHHHHHHCCCCCCCH---HHHH-HHHHH
Q ss_conf             40223464225627-96048731621356-8-----------000--19899998643116888787---8899-99988
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN-D-----------FLM--YDLSICINAWCFDENNTYNP---SRGF-SILNG  247 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~-~-----------~~i--~DLAi~i~~~c~~~~~~~d~---~~~~-~~l~g  247 (316)
                      ==||=|.+|+|++. |++. -|||++.-- .           |+.  .|.+..+.    +..|..+.   .+++ -...|
T Consensus       215 GIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~lt~emv~vmg----~g~~g~~S~~f~~F~~~c~~a  289 (366)
T cd05165         215 GIGDRHNDNIMVKETGQLF-HIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIG----RGKKDNTSEHFQRFQDLCEKA  289 (366)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH----CCCCCCCCHHHHHHHHHHHHH
T ss_conf             3566678845688999999-98634663678877898777899888899999984----568899978899999999999


Q ss_pred             HHHCCCCCHHHHHHHHHH
Q ss_conf             764188998999999999
Q gi|254780795|r  248 YNKVRKISENELQSLPTL  265 (316)
Q Consensus       248 Y~~vrpLs~~E~~~l~~l  265 (316)
                      |..+|+=+..=+..+-.|
T Consensus       290 y~~lRk~~~lil~L~~lM  307 (366)
T cd05165         290 YLALRRHGNLLIILFSMM  307 (366)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999898999999999


No 435
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=72.99  E-value=7  Score=18.84  Aligned_cols=76  Identities=16%  Similarity=0.061  Sum_probs=38.1

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCC-CCHH----HCCHH-----HHHHHHHHCCCCCCCHHHHH-HHHHHHHHCCCC
Q ss_conf             40223464225627-9604873162135-6800----01989-----99986431168887878899-999887641889
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSC-NDFL----MYDLS-----ICINAWCFDENNTYNPSRGF-SILNGYNKVRKI  254 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~-~~~~----i~DLA-----i~i~~~c~~~~~~~d~~~~~-~~l~gY~~vrpL  254 (316)
                      ==||=|.+|+|++. +++. -|||++.- .++.    -+|-|     --+.. .+...++-.-.++. -..+||..+|+=
T Consensus       206 gIgDRHn~NImi~~~G~l~-HIDFG~iLG~~~~~~~~~~E~aPFklt~em~~-vmgG~~S~~f~~F~~lc~~ay~~lRk~  283 (352)
T cd00891         206 GIGDRHNDNIMLTKTGHLF-HIDFGHFLGNFKKKFGIKRERAPFVLTPDMAY-VMGGGDSEKFQRFEDLCCKAYNILRKH  283 (352)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEECHHHHCCCCCCCCCCCCCCCEECCHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             2566677755798888599-99644765679988997778889305899999-967998487999999999999999997


Q ss_pred             CHHHHHHHHH
Q ss_conf             9899999999
Q gi|254780795|r  255 SENELQSLPT  264 (316)
Q Consensus       255 s~~E~~~l~~  264 (316)
                      +..=+..+-.
T Consensus       284 ~~~ii~L~~l  293 (352)
T cd00891         284 GNLFINLFSL  293 (352)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 436
>KOG0582 consensus
Probab=72.32  E-value=7.3  Score=18.74  Aligned_cols=135  Identities=17%  Similarity=0.219  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEEEEE-CCCCEE-EEEE--CCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             46681200179994-399589-9982--1669-98899999999999853267755510010267787522451557864
Q gi|254780795|r   30 IIHGVENSNFVIQT-SKGTFI-LTIY--EKRM-NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF  104 (316)
Q Consensus        30 i~~G~~Ntny~v~t-~~~~yi-Lri~--e~~~-~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~  104 (316)
                      |..|..-+.|+-.. ..++|| .|++  |+-. +-+.|..++..|..+     .=|.++...   ..+.++...|+|++|
T Consensus        34 IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~-----~HPNIv~~~---~sFvv~~~LWvVmpf  105 (516)
T KOG0582          34 IGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLI-----DHPNIVTYH---CSFVVDSELWVVMPF  105 (516)
T ss_pred             EECCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHC-----CCCCCCEEE---EEEEECCEEEEEEHH
T ss_conf             704630576443420468779999950665203699999999875533-----799832077---889836566885433


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78870768998999999998643675306875433231124564576675200155227889999999888765210777
Q gi|254780795|r  105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT  184 (316)
Q Consensus       105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~  184 (316)
                      +.|.++-                 |..-..|+-      +       ++   +..-..+.+++.+.+.++..       .
T Consensus       106 Ma~GS~l-----------------dIik~~~~~------G-------l~---E~~Ia~iLre~LkaL~YLH~-------~  145 (516)
T KOG0582         106 MAGGSLL-----------------DIIKTYYPD------G-------LE---EASIATILREVLKALDYLHQ-------N  145 (516)
T ss_pred             HCCCCHH-----------------HHHHHHCCC------C-------CC---HHHHHHHHHHHHHHHHHHHH-------C
T ss_conf             3377289-----------------999997136------5-------34---78999999999999999986-------6


Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             4440223464225627960487316213
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      |-||.|...+|||.+.+...-+=||+.+
T Consensus       146 G~IHRdvKAgnILi~~dG~VkLadFgvs  173 (516)
T KOG0582         146 GHIHRDVKAGNILIDSDGTVKLADFGVS  173 (516)
T ss_pred             CCEECCCCCCCEEECCCCCEEECCCEEE
T ss_conf             9330345546379868986897474145


No 437
>pfam09192 Act-Frag_cataly Actin-fragmin kinase, catalytic. Members of this family assume a secondary structure consisting of eight beta strands and 11 alpha-helices, organized in two lobes. They are predominantly found in actin-fragmin kinase, where they act as a catalytic domain that mediates the phosphorylation of actin.
Probab=70.73  E-value=3.5  Score=20.82  Aligned_cols=54  Identities=24%  Similarity=0.335  Sum_probs=28.2

Q ss_pred             CCEEEEEECCCCCEEEE--EEEEECCC------CEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf             86053100466812001--79994399------58999821669988999999999998532-6775551
Q gi|254780795|r   22 GQLNSVQPIIHGVENSN--FVIQTSKG------TFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIP   82 (316)
Q Consensus        22 g~~~~~~~i~~G~~Ntn--y~v~t~~~------~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~p   82 (316)
                      ..+.+++.+..|..|+.  ++|.|-++      ..|+|..-    ...-+.   +...|++. |+|+|+.
T Consensus        25 ~~L~si~~~e~~~~ns~gv~f~~tf~~~~~~~~avViK~S~----ti~~E~---~~~~La~~Lgv~tPq~   87 (274)
T pfam09192        25 NNLSSIELIDHSTVNSSGVFFVATFNGNNNKENQVVIKSSS----TIAQEV---YASVLAKILGLPIPEM   87 (274)
T ss_pred             HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCC----CHHHHH---HHHHHHHHHCCCCCCE
T ss_conf             88787751023567878679999715888865359997487----179999---9999999968999744


No 438
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=70.65  E-value=7.9  Score=18.50  Aligned_cols=77  Identities=19%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCC-CCHHHCC----HHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCHHHH
Q ss_conf             40223464225627-9604873162135-6800019----899998643116888787889-999988764188998999
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSC-NDFLMYD----LSICINAWCFDENNTYNPSRG-FSILNGYNKVRKISENEL  259 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~-~~~~i~D----LAi~i~~~c~~~~~~~d~~~~-~~~l~gY~~vrpLs~~E~  259 (316)
                      ==||=|.+|+|++. +++. -|||++.- .+|--+-    |.--+.. .+...++-.-..+ .-...||..+|+=.+.=+
T Consensus       205 gigDRH~~NImi~~~G~l~-HIDFG~~lg~~p~~~~~PfkLt~emv~-~mGG~~s~~f~~F~~lc~~ay~~lRk~~~~il  282 (350)
T cd00896         205 GVGDRHLDNLLLTKDGKLF-HIDFGYILGRDPKPFPPPMKLCKEMVE-AMGGAQSEGYQEFKSYCCEAYNILRKSANLIL  282 (350)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEEHHHHCCCCCCCCCCEECCHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2677576745699999889-984134417898778898035799998-70898857699999999999999998599999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780795|r  260 QSLPTL  265 (316)
Q Consensus       260 ~~l~~l  265 (316)
                      ..+-.|
T Consensus       283 ~L~~lM  288 (350)
T cd00896         283 NLFSLM  288 (350)
T ss_pred             HHHHHH
T ss_conf             999997


No 439
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=70.38  E-value=2.7  Score=21.53  Aligned_cols=26  Identities=31%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             EEECCCCCCCEEECC--CCCEEEECCCCC
Q ss_conf             440223464225627--960487316213
Q gi|254780795|r  186 IIHADLFPDNVLFYN--NKIMGLIDFYFS  212 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~--~~i~giIDF~~~  212 (316)
                      +-=||=|++|+|++.  +++. -|||+.|
T Consensus       211 lGLGDRH~~NILi~~~tG~vv-HIDfg~~  238 (307)
T cd05170         211 IGLGDRHLDNVLIDLKTGEVV-HIDYNVC  238 (307)
T ss_pred             HCCCCCCCCEEEEECCCCCEE-EEECHHH
T ss_conf             236789864089986878889-9951233


No 440
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the 
Probab=69.99  E-value=2.7  Score=21.55  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=22.5

Q ss_pred             EEECCCCCCCEEEC--CCCCEEEECCCCCCCC
Q ss_conf             44022346422562--7960487316213568
Q gi|254780795|r  186 IIHADLFPDNVLFY--NNKIMGLIDFYFSCND  215 (316)
Q Consensus       186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~~~  215 (316)
                      +-=||=|++|+|++  .+++. -|||+++-..
T Consensus       130 lgigDRH~~NIli~~~tG~v~-hIDFg~~f~~  160 (219)
T cd00142         130 LGIGDRHPDNIMIDLDTGKLF-HIDFGFIFGK  160 (219)
T ss_pred             EECCCCCCCCEEEECCCCCEE-EEEEHHHHCC
T ss_conf             132689987188983888699-9952554255


No 441
>KOG0591 consensus
Probab=69.07  E-value=8.6  Score=18.28  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=23.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             74440223464225627960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      ..++|.|+.|.||+.+.+.++-+=||+-+
T Consensus       147 ~~VmHRDIKPaNIFl~~~gvvKLGDfGL~  175 (375)
T KOG0591         147 GTVMHRDIKPANIFLTANGVVKLGDFGLG  175 (375)
T ss_pred             CCEEECCCCCHHEEECCCCCEEECCCHHH
T ss_conf             55234357601068717885664341157


No 442
>KOG0611 consensus
Probab=68.43  E-value=7.4  Score=18.69  Aligned_cols=27  Identities=30%  Similarity=0.520  Sum_probs=12.0

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCC
Q ss_conf             444022346422562796048731621
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYF  211 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~  211 (316)
                      ++.|.|+...|||.+.|.-.-|-||+.
T Consensus       173 rVvHRDLKLENILLD~N~NiKIADFGL  199 (668)
T KOG0611         173 RVVHRDLKLENILLDQNNNIKIADFGL  199 (668)
T ss_pred             CCEECCCCHHHEEECCCCCEEEECCCH
T ss_conf             500010005441323789745530430


No 443
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central 
Probab=67.24  E-value=3.6  Score=20.73  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             EEECCCCCCCEEEC--CCCCEEEECCCCCC
Q ss_conf             44022346422562--79604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFY--NNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~  213 (316)
                      +-=||=|++|+|++  .+++. -|||+.+-
T Consensus       141 lglGDRH~~NIli~~~tG~vv-HIDFg~~f  169 (237)
T cd00892         141 LGLGDRHGENILFDSNTGDVV-HVDFNCLF  169 (237)
T ss_pred             HCCCCCCCCCEEEECCCCCEE-EEECHHHH
T ss_conf             034788876589985888889-87121330


No 444
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=67.21  E-value=3.1  Score=21.15  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             EECCCCCCCEEECC--CCCEEEECCCCC
Q ss_conf             40223464225627--960487316213
Q gi|254780795|r  187 IHADLFPDNVLFYN--NKIMGLIDFYFS  212 (316)
Q Consensus       187 IHgDl~~~NiL~~~--~~i~giIDF~~~  212 (316)
                      ==||=|++|+|++.  +++. -|||+.+
T Consensus       184 GLGDRH~~NIli~~~tG~vv-hIDF~~~  210 (279)
T cd05171         184 GLGDRHANNILIDEKTAEVV-HIDLGIA  210 (279)
T ss_pred             CCCCCCCCCEEEECCCCCEE-EECCHHH
T ss_conf             15788865278875875199-9724776


No 445
>KOG4278 consensus
Probab=66.90  E-value=8.1  Score=18.42  Aligned_cols=30  Identities=37%  Similarity=0.464  Sum_probs=26.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+||.||-.-|.|+..+.|+-|-||+.+.
T Consensus       384 knFIHRDLAARNCLVgEnhiVKvADFGLsR  413 (1157)
T KOG4278         384 KNFIHRDLAARNCLVGENHIVKVADFGLSR  413 (1157)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCHHH
T ss_conf             321555456551211346357752111566


No 446
>KOG0579 consensus
Probab=66.70  E-value=9.5  Score=17.98  Aligned_cols=153  Identities=18%  Similarity=0.306  Sum_probs=75.1

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCC-E-EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             577089999999998489986053100466812001799943995-8-99982166998899999999999853267755
Q gi|254780795|r    3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGT-F-ILTIYEKRMNEKDLPVFIELLHYISRNKLPCP   80 (316)
Q Consensus         3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~-y-iLri~e~~~~~~~l~~~~~ll~~L~~~gipvP   80 (316)
                      ||-.|+..+.=.|+...|-|..-.+           |.-.....+ + .-++.+- -.+++|.-++--++-|+...-  |
T Consensus        24 v~rdlnP~d~WeIiGELGDGAFGKV-----------yKA~nket~~lAAaKvIet-kseEELEDylVEIeILa~CdH--P   89 (1187)
T KOG0579          24 VYRDLNPRDHWEIIGELGDGAFGKV-----------YKAVNKETKLLAAAKVIET-KSEEELEDYLVEIEILAECDH--P   89 (1187)
T ss_pred             HHCCCCHHHHHHHHHHHCCCCCHHH-----------HHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCC--H
T ss_conf             7515987888998764057610345-----------5442356004555444203-436677656420136530797--1


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             51001026778752245155786478870768998999999998643675306875433231124564576675200155
Q gi|254780795|r   81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD  160 (316)
Q Consensus        81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~  160 (316)
                      ..++-. +.+  .+.|+.+.|.+|+.|..+..    .+-++|+.|-.                  ..+            
T Consensus        90 ~ivkLl-~ay--y~enkLwiliEFC~GGAVDa----imlEL~r~LtE------------------~QI------------  132 (1187)
T KOG0579          90 VIVKLL-SAY--YFENKLWILIEFCGGGAVDA----IMLELGRVLTE------------------DQI------------  132 (1187)
T ss_pred             HHHHHH-HHH--HCCCCEEEEEEECCCCHHHH----HHHHHCCCCCH------------------HHH------------
T ss_conf             798887-777--20574489886358840768----89874466666------------------889------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCC
Q ss_conf             227889999999888765210777444022346422562-796048731621356
Q gi|254780795|r  161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCN  214 (316)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~  214 (316)
                      ...-..+.+.++++..       ..+||.|+..+|||+. ++.|. +-||+-+.-
T Consensus       133 qvvc~q~ldALn~LHs-------~~iIHRDLKAGNiL~TldGdir-LADFGVSAK  179 (1187)
T KOG0579         133 QVVCYQVLDALNWLHS-------QNIIHRDLKAGNILLTLDGDIR-LADFGVSAK  179 (1187)
T ss_pred             HHHHHHHHHHHHHHHH-------CCHHHHHCCCCCEEEEECCCEE-EECCCCCCC
T ss_conf             9999999999888764-------1233311145636897248576-300343412


No 447
>KOG2653 consensus
Probab=65.95  E-value=2  Score=22.34  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=8.4

Q ss_pred             CCHHHHHHHHHHCCCCCEEEE
Q ss_conf             899999999984899860531
Q gi|254780795|r    7 PPQKEIQSFVQEYAIGQLNSV   27 (316)
Q Consensus         7 ls~~el~~il~~y~lg~~~~~   27 (316)
                      +|.+|+..++..||-|++.||
T Consensus       214 ls~~eia~vF~~WN~geleSf  234 (487)
T KOG2653         214 LSNDEIAEVFDDWNKGELESF  234 (487)
T ss_pred             CCHHHHHHHHHHHCCCCHHHH
T ss_conf             667889999976433316689


No 448
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=65.75  E-value=3.3  Score=21.00  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             EECCCCCCCEEEC--CCCCEEEECCCCCC
Q ss_conf             4022346422562--79604873162135
Q gi|254780795|r  187 IHADLFPDNVLFY--NNKIMGLIDFYFSC  213 (316)
Q Consensus       187 IHgDl~~~NiL~~--~~~i~giIDF~~~~  213 (316)
                      ==||-|++|++++  .++|. -|||++|-
T Consensus       157 GlGDRh~~Nili~~~tG~vv-hiDf~~~f  184 (253)
T cd05163         157 SINNRNPDKIFISRDTGNVY-QSDLLPSI  184 (253)
T ss_pred             CCCCCCHHHEEEECCCCCEE-EEEECHHH
T ss_conf             16899856679986877789-98533221


No 449
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=65.73  E-value=3.8  Score=20.57  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=21.0

Q ss_pred             EEECCCCCCCEEEC--CCCCEEEECCCCCC
Q ss_conf             44022346422562--79604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFY--NNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~  213 (316)
                      +-=||=|++|+|++  .+++. -|||+++-
T Consensus       138 lglgDRH~~NIli~~~tG~vv-HIDF~~~f  166 (235)
T cd05172         138 LGIGDRHLSNFLVDLETGGLV-GIDFGHAF  166 (235)
T ss_pred             HCCCCCCCCCEEEECCCCCEE-EECHHHHH
T ss_conf             023688876489986987788-76001211


No 450
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=65.04  E-value=10  Score=17.77  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=41.2

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCCC---CHHHCCHH-----HHHHHHHHCCCCCCCHHHHH-HHHHHHHHCCCCCH
Q ss_conf             40223464225627-96048731621356---80001989-----99986431168887878899-99988764188998
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN---DFLMYDLS-----ICINAWCFDENNTYNPSRGF-SILNGYNKVRKISE  256 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~---~~~i~DLA-----i~i~~~c~~~~~~~d~~~~~-~~l~gY~~vrpLs~  256 (316)
                      ==||=|.+|+|++. +++. -|||++.--   +..-+|-|     --+... +...++-.-..+. -+++||..+|+=+.
T Consensus       144 gIgDRHn~NImi~~~Ghl~-HIDFGfiLg~~pg~~~fE~aPFkLT~emv~v-mGG~~S~~f~~F~~lc~~af~~lRk~~~  221 (293)
T cd05168         144 QIKDRHNGNILIDNDGHII-HIDFGFMLSNSPGNVGFETAPFKLTQEYIEV-MGGVNSDLFNYFKKLFLKGFMALRKHVD  221 (293)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCEECCHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3566578864788988899-8742455345888888888995337999998-5898857899999999999999998799


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780795|r  257 NELQSLPTLLR  267 (316)
Q Consensus       257 ~E~~~l~~ll~  267 (316)
                      .=+..+..|+.
T Consensus       222 ~ii~L~~lM~~  232 (293)
T cd05168         222 RIILLVEIMQS  232 (293)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999864


No 451
>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]
Probab=64.08  E-value=3.5  Score=20.81  Aligned_cols=30  Identities=40%  Similarity=0.730  Sum_probs=24.7

Q ss_pred             CCEEECCCCCCCEEECCCC-CEEEECCCCCC
Q ss_conf             7444022346422562796-04873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNK-IMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~-i~giIDF~~~~  213 (316)
                      .+++|.|+.|.|++.+... ..-++||+.+.
T Consensus       120 ~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~  150 (384)
T COG0515         120 KGIIHRDIKPENILLDRDGRVVKLIDFGLAK  150 (384)
T ss_pred             CCCCCCCCCHHHEEECCCCCCEEECCCCCHH
T ss_conf             7950788988993567788815765754112


No 452
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=63.78  E-value=3.9  Score=20.49  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             EEECCCCCCCEEECC--CCCEEEECCCCCC
Q ss_conf             440223464225627--9604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFYN--NKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~--~~i~giIDF~~~~  213 (316)
                      +-=||=|++|+|++.  +++. -|||+++-
T Consensus       133 lglgDRH~~NIl~~~~tG~v~-HIDFg~~f  161 (222)
T cd05164         133 LGLGDRHLDNILIDRETGEVV-HIDFGCIF  161 (222)
T ss_pred             HCCCCCCCCCEEEECCCCCEE-EEEHHHHH
T ss_conf             125888866577764877489-98418762


No 453
>KOG0902 consensus
Probab=63.61  E-value=11  Score=17.60  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             ECCCCCCCEEECC-CCCEEEECCCCCCC----CHHH----CCHHHHHHHHHHCCCCCCCH---HHH-HHHHHHHHHCCCC
Q ss_conf             0223464225627-96048731621356----8000----19899998643116888787---889-9999887641889
Q gi|254780795|r  188 HADLFPDNVLFYN-NKIMGLIDFYFSCN----DFLM----YDLSICINAWCFDENNTYNP---SRG-FSILNGYNKVRKI  254 (316)
Q Consensus       188 HgDl~~~NiL~~~-~~i~giIDF~~~~~----~~~i----~DLAi~i~~~c~~~~~~~d~---~~~-~~~l~gY~~vrpL  254 (316)
                      --|=|.+|+++++ |++. -|||++.--    |..-    |-|.--+... +  +|....   ..+ .-.++||-.+||-
T Consensus      1656 ~KDRHNGNim~Dd~G~~i-HIDFGf~~e~sPGgnl~fE~~fKLt~Em~~~-m--gG~~~~~~f~~f~elcVk~yLA~R~~ 1731 (1803)
T KOG0902        1656 IKDRHNGNIMIDDQGHII-HIDFGFMFESSPGGNLGFEPPFKLTKEMVML-M--GGKMEAKPFKWFQELCVKGYLAARPY 1731 (1803)
T ss_pred             CCCCCCCCEEECCCCCEE-EEEEEEEEEECCCCCCCCCCCCCCHHHHHHH-H--CCCCCCCCHHHHHHHHHHHHHHHCHH
T ss_conf             222468835672678789-9862268850699866657873226999999-5--89877862899999999999860467


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             989999999999
Q gi|254780795|r  255 SENELQSLPTLL  266 (316)
Q Consensus       255 s~~E~~~l~~ll  266 (316)
                      .++=......|+
T Consensus      1732 ~~~iv~~V~~ml 1743 (1803)
T KOG0902        1732 MDAIVSLVQSML 1743 (1803)
T ss_pred             HHHHHHHHHHHH
T ss_conf             888999999997


No 454
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=63.25  E-value=11  Score=17.56  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHH
Q ss_conf             99998643116888787889999988764188998999999-----99999999999999999
Q gi|254780795|r  222 SICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLY  279 (316)
Q Consensus       222 Ai~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~  279 (316)
                      +..+|-+|+.-..+-+-+++.+==++|....+||++|++++     -.||+..+-=|+|.-+.
T Consensus         5 gY~LN~f~~sl~~~~nRe~F~ade~Ay~d~~~Lt~eqk~av~~RDw~~mi~~Ggniy~l~Kla   67 (94)
T cd07923           5 AYRINRFLHRLIEPAHRERFLEDPEALFDEAGLTEEERTLIRNRDWIGMIRYGVIFFVLEKLA   67 (94)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             578999999977788899997099999987699999999999616999998376499999999


No 455
>KOG0200 consensus
Probab=62.03  E-value=5.6  Score=19.46  Aligned_cols=29  Identities=34%  Similarity=0.523  Sum_probs=26.7

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..+|.|+-.-|||..++++.-|=||+.|-
T Consensus       438 ~~vHRDLAaRNVLi~~~~~~kIaDFGlar  466 (609)
T KOG0200         438 PCVHRDLAARNVLITKNKVIKIADFGLAR  466 (609)
T ss_pred             CCCCCCCCCCCEEECCCCEEEECCCCCCC
T ss_conf             85076654463466389578756887246


No 456
>KOG0614 consensus
Probab=61.78  E-value=4.6  Score=20.04  Aligned_cols=30  Identities=43%  Similarity=0.693  Sum_probs=26.0

Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             774440223464225627960487316213
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      .+|+|-.|+.|.|++.+.+...-+.||++|
T Consensus       538 ~k~iIYRDLKPENllLd~~Gy~KLVDFGFA  567 (732)
T KOG0614         538 RKGIIYRDLKPENLLLDNRGYLKLVDFGFA  567 (732)
T ss_pred             HCCCEECCCCHHHEEECCCCCEEEEEHHHH
T ss_conf             648044147756625456885677510467


No 457
>pfam00454 PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase. Some members of this family probably do not have lipid kinase activity and are protein kinases.
Probab=61.58  E-value=4.6  Score=20.01  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             EEECCCCCCCEEEC--CCCCEEEECCCCCCC
Q ss_conf             44022346422562--796048731621356
Q gi|254780795|r  186 IIHADLFPDNVLFY--NNKIMGLIDFYFSCN  214 (316)
Q Consensus       186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~~  214 (316)
                      +==||=|++|+|++  .+++. =|||+++--
T Consensus       134 lglgDRH~~NILi~~~~G~~v-HIDfg~~f~  163 (233)
T pfam00454       134 LGNGDRHLDNILVDKTTGKLF-HIDFGLCFP  163 (233)
T ss_pred             HCCCCCCCCCEEEECCCCCEE-EECHHHHCC
T ss_conf             127888876078976899488-762375504


No 458
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family; InterPro: IPR003719   Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid .; GO: 0003824 catalytic activity, 0009058 biosynthetic process.
Probab=61.30  E-value=12  Score=17.34  Aligned_cols=115  Identities=16%  Similarity=0.259  Sum_probs=62.1

Q ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEE--ECCCCEEEEEECCCCCHHHHHHH----------HHHHHHH
Q ss_conf             70899999999984899860531004668120017999--43995899982166998899999----------9999998
Q gi|254780795|r    5 THPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQ--TSKGTFILTIYEKRMNEKDLPVF----------IELLHYI   72 (316)
Q Consensus         5 t~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~--t~~~~yiLri~e~~~~~~~l~~~----------~~ll~~L   72 (316)
                      .++|.+|++.|.+.-|.             .-|.|++.  ++++.|=||+|-.   ..++++-          +.|++..
T Consensus        32 ne~s~~~mQ~IA~~~ny-------------SET~F~~~P~~~~~d~~LR~FTP---~~El~~aGHaTigs~y~~Gl~~~~   95 (314)
T TIGR00654        32 NELSEEEMQLIAEEINY-------------SETAFLLKPVSEKADLRLRIFTP---KSELPFAGHATIGSLYALGLLEVT   95 (314)
T ss_pred             CCCCHHHHHHHHHHHCC-------------CEEEEEECCCCCCCCEEEEEECC---CCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             00587899999997188-------------40255317878766637887648---753477786438999987620057


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHCCCCEEE-EECCCCCCC-CC-CCHHHHHHHHHHHHH-HHHHCCC-CC
Q ss_conf             53267755510010267787522451557-864788707-68-998999999998643-6753068-75
Q gi|254780795|r   73 SRNKLPCPIPIPRNDGKLYGFLCKKPANI-FSFIKGSPL-NH-ISDIHCEEIGSMLAS-MHQKTKN-FH  136 (316)
Q Consensus        73 ~~~gipvP~pi~~~~G~~~~~~~~k~~~L-~~~i~G~~~-~~-~~~~~~~~lG~~La~-lH~~~~~-f~  136 (316)
                      . ....+...+.++-|..=.++..+.-.| .++..+... +. .+.+.|..+..+||- ..+..++ ++
T Consensus        96 ~-~~~~~t~~~~~~~G~~Pvti~~~~g~l~is~~~~~~~f~~~~~~~~~~~l~~aLGLt~d~~~~~elp  163 (314)
T TIGR00654        96 K-LEVATTLVQEEKAGLVPVTIEEKDGQLRISLEQAAPDFEPKLSGESRADLAKALGLTEDDFLKGELP  163 (314)
T ss_pred             C-CCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCC
T ss_conf             8-7510238870367605678861589278860025888888987688999999838775681688766


No 459
>KOG0905 consensus
Probab=61.27  E-value=12  Score=17.33  Aligned_cols=71  Identities=23%  Similarity=0.276  Sum_probs=39.4

Q ss_pred             ECCCCCCCEEECC-CCCEEEECCCCCCC------------CHHHC--CHHHHHHHHHHCCCCCCCHHHHHH----HHHHH
Q ss_conf             0223464225627-96048731621356------------80001--989999864311688878788999----99887
Q gi|254780795|r  188 HADLFPDNVLFYN-NKIMGLIDFYFSCN------------DFLMY--DLSICINAWCFDENNTYNPSRGFS----ILNGY  248 (316)
Q Consensus       188 HgDl~~~NiL~~~-~~i~giIDF~~~~~------------~~~i~--DLAi~i~~~c~~~~~~~d~~~~~~----~l~gY  248 (316)
                      =+|=|.|||++.. |.+- -|||+----            .|++|  |.|..||.      |.-...+.+.    -.++|
T Consensus      1200 IcDRHNDNIMl~~sGHmF-HIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINg------G~kpt~~fq~FVDlCCrAy 1272 (1639)
T KOG0905        1200 ICDRHNDNIMLTKSGHMF-HIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVING------GDKPTQRFQDFVDLCCRAY 1272 (1639)
T ss_pred             CCCCCCCCEEEECCCCEE-EEEHHHHCCHHHHHCCCCCCCCCEEEECCCHHHHCC------CCCCCHHHHHHHHHHHHHH
T ss_conf             022567725783057379-974333234688745655456874775030412228------9998167889999999999


Q ss_pred             HHCCCCCHHHHHHHHHH
Q ss_conf             64188998999999999
Q gi|254780795|r  249 NKVRKISENELQSLPTL  265 (316)
Q Consensus       249 ~~vrpLs~~E~~~l~~l  265 (316)
                      +-+|+=+.-=+..|-.|
T Consensus      1273 NiiRK~t~lllnlL~lM 1289 (1639)
T KOG0905        1273 NIIRKNTNLLLNLLRLM 1289 (1639)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99987278999999998


No 460
>KOG1025 consensus
Probab=60.26  E-value=12  Score=17.22  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=25.3

Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             77444022346422562796048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      .+.++|+|+..-|||+......-|-||+-+-.
T Consensus       816 ~qrlVHrdLaaRNVLVksP~hvkitdfgla~l  847 (1177)
T KOG1025         816 EQRLVHRDLAARNVLVKSPNHVKITDFGLAKL  847 (1177)
T ss_pred             HCCHHHHHHHHHHEEECCCCEEEEEECCHHHC
T ss_conf             65412120234314414887578875040112


No 461
>KOG0580 consensus
Probab=60.11  E-value=7.6  Score=18.62  Aligned_cols=145  Identities=21%  Similarity=0.375  Sum_probs=71.9

Q ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEE--EEEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             99848998605310046681200179994399589--9982166-----9988999999999998532677555100102
Q gi|254780795|r   15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFI--LTIYEKR-----MNEKDLPVFIELLHYISRNKLPCPIPIPRND   87 (316)
Q Consensus        15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yi--Lri~e~~-----~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~   87 (316)
                      -+.+|++|++..= | .-|   ..|+...+++.||  ||+-++.     ..+.+++.++++..||..     |.+++   
T Consensus        20 ~l~dfeigr~Lgk-g-kFG---~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~h-----pnilr---   86 (281)
T KOG0580          20 TLDDFEIGRPLGK-G-KFG---NVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRH-----PNILR---   86 (281)
T ss_pred             CHHHCCCCCCCCC-C-CCC---CEEEEEECCCCCEEEEEEEEHHHHHHHCCHHHHHHEEEEECCCCC-----CCHHH---
T ss_conf             5112113665467-7-566---276764226784799873018888874306552102575304688-----32776---


Q ss_pred             HHHHHHH--CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             6778752--2451557864788707689989999999986436753-068754332311245645766752001552278
Q gi|254780795|r   88 GKLYGFL--CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQK-TKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLK  164 (316)
Q Consensus        88 G~~~~~~--~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~-~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  164 (316)
                        .+..+  ..+.+.+++|.++-              ++...|-.. +..|.-.+                    .....
T Consensus        87 --lY~~fhd~~riyLilEya~~g--------------el~k~L~~~~~~~f~e~~--------------------~a~Yi  130 (281)
T KOG0580          87 --LYGYFHDSKRIYLILEYAPRG--------------ELYKDLQEGRMKRFDEQR--------------------AATYI  130 (281)
T ss_pred             --HHHHEECCCEEEEEEEECCCC--------------HHHHHHHHCCCCCCCCCC--------------------HHHHH
T ss_conf             --645110342268898744884--------------189999755256646622--------------------55899


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCH
Q ss_conf             899999998887652107774440223464225627-9604873162135680
Q gi|254780795|r  165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDF  216 (316)
Q Consensus       165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~  216 (316)
                      ..+.+.+...       ..+.+||.|.-|.|+|..- +.+. +=||+.+...+
T Consensus       131 ~q~A~Al~y~-------h~k~VIhRdiKpenlLlg~~~~lk-iAdfGwsV~~p  175 (281)
T KOG0580         131 KQLANALLYC-------HLKRVIHRDIKPENLLLGSAGELK-IADFGWSVHAP  175 (281)
T ss_pred             HHHHHHHHHH-------HCCCCCCCCCCHHHHCCCCCCCEE-CCCCCCEEECC
T ss_conf             9998999875-------038720698977873648889700-26786143437


No 462
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and 
Probab=59.65  E-value=13  Score=17.16  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=38.7

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCC-CC-----------CHHHC--CHHHHHHHHHHCCCCCCCHHH---HH-HHHHH
Q ss_conf             40223464225627-960487316213-56-----------80001--989999864311688878788---99-99988
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CN-----------DFLMY--DLSICINAWCFDENNTYNPSR---GF-SILNG  247 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~-----------~~~i~--DLAi~i~~~c~~~~~~~d~~~---~~-~~l~g  247 (316)
                      ==||=|.||+|.+. |++- -|||++. +.           .|+..  |.+-++     ...+.-+.+.   ++ -...|
T Consensus       211 gIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~lT~em~~vm-----~~g~g~~S~~f~~F~~lc~~A  284 (361)
T cd05174         211 GIGDRHSDNIMIRESGQLF-HIDFGHFLGNFKTKFGINRERVPFILTYDFVHVI-----QQGKTNNSEKFERFRGYCEQA  284 (361)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH-----HCCCCCCCHHHHHHHHHHHHH
T ss_conf             2466678845788999889-9861355356777788887889976669999999-----638998877899999999999


Q ss_pred             HHHCCCCCHHHHHHHHHH
Q ss_conf             764188998999999999
Q gi|254780795|r  248 YNKVRKISENELQSLPTL  265 (316)
Q Consensus       248 Y~~vrpLs~~E~~~l~~l  265 (316)
                      |...|+=+..=+..+-.|
T Consensus       285 y~~lRk~~~lil~Lf~LM  302 (361)
T cd05174         285 YKILRRHGTLFLHLFALM  302 (361)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999998789999999999


No 463
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830   Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=59.44  E-value=8.1  Score=18.43  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCE-EECCCCC--CCEEE
Q ss_conf             88999999988876521077744-4022346--42256
Q gi|254780795|r  164 KKEIDHEFCFLKESWPKNLPTGI-IHADLFP--DNVLF  198 (316)
Q Consensus       164 ~~~l~~~l~~~~~~~~~~Lp~g~-IHgDl~~--~NiL~  198 (316)
                      ++.+.+.++.+++...+++|-++ ||+||=.  -|.++
T Consensus       171 P~km~~l~k~~k~~~kKd~~~sVHCHNDFGlAtANsi~  208 (371)
T TIGR02090       171 PQKMEELIKKIKENVKKDLPVSVHCHNDFGLATANSIA  208 (371)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             26799999999986358870588620860188999999


No 464
>KOG0607 consensus
Probab=59.05  E-value=13  Score=17.09  Aligned_cols=31  Identities=39%  Similarity=0.647  Sum_probs=23.3

Q ss_pred             CCCEEECCCCCCCEEECC-CCCE--EEECCCCCC
Q ss_conf             774440223464225627-9604--873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIM--GLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~--giIDF~~~~  213 (316)
                      .+|+-|.|+.|.|||... ++|+  -|-|||-..
T Consensus       194 ~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgS  227 (463)
T KOG0607         194 TKGIAHRDLKPENILCESPNKVSPVKICDFDLGS  227 (463)
T ss_pred             HCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCC
T ss_conf             3373013578200331488775860453344565


No 465
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes,  including cell motility, the Ras pathway, vesicle trafficking and  secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=58.13  E-value=5  Score=19.80  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=20.6

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             40223464225627-96048731621356
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
                      ==||=|++|++++. +++. -|||+++-.
T Consensus       104 glgDRH~~Nili~~~G~v~-HIDfg~~~~  131 (202)
T smart00146      104 GLGDRHNDNIMLDKTGHLF-HIDFGFILG  131 (202)
T ss_pred             CCCCCCCCCEEEECCCCEE-EHHHHHHHC
T ss_conf             1688986637881899888-424566643


No 466
>KOG1033 consensus
Probab=58.04  E-value=2.1  Score=22.24  Aligned_cols=31  Identities=32%  Similarity=0.629  Sum_probs=25.7

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             7444022346422562796048731621356
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
                      +++||-|+.|.||+|..+...-|-||+....
T Consensus       375 k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts  405 (516)
T KOG1033         375 KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTS  405 (516)
T ss_pred             CCCHHHHCCCCCCCCCCCHHHHHHHHHHEEE
T ss_conf             3335553353234345420466544440120


No 467
>KOG0597 consensus
Probab=57.98  E-value=14  Score=16.97  Aligned_cols=29  Identities=31%  Similarity=0.539  Sum_probs=23.2

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +++|.|+.|-|||..++...-+-||++|.
T Consensus       120 rilhrd~kPqniLl~~~~~~KlcdFg~Ar  148 (808)
T KOG0597         120 RILHRDMKPQNILLEKGGTLKLCDFGLAR  148 (808)
T ss_pred             CCCCCCCCCCEEEECCCCCEEECHHHHHH
T ss_conf             72435687200441478733322024554


No 468
>KOG4158 consensus
Probab=56.52  E-value=14  Score=16.82  Aligned_cols=30  Identities=30%  Similarity=0.563  Sum_probs=22.8

Q ss_pred             CCCEEECCCCCCCEEEC--CCC---CEEEECCCCCC
Q ss_conf             77444022346422562--796---04873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFY--NNK---IMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~--~~~---i~giIDF~~~~  213 (316)
                      ..|+-|.|+..||||.+  +|.   ++ |-||+.|-
T Consensus       359 ~hgvAhRDlKSDNiL~ElddD~~P~LV-vaDFGCcL  393 (598)
T KOG4158         359 KHGVAHRDLKSDNILLELDDDEIPQLV-VADFGCCL  393 (598)
T ss_pred             HCCCHHHCCCCCCEEEEECCCCCCEEE-ECCCCEEE
T ss_conf             703012024556468873688785788-70454154


No 469
>KOG0696 consensus
Probab=56.10  E-value=9.4  Score=18.02  Aligned_cols=30  Identities=37%  Similarity=0.472  Sum_probs=25.0

Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             774440223464225627-9604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
                      .+|+|-.|+..|||+.+. +.|. |-||+.|-
T Consensus       468 ~kgIiYRDLKLDNvmLd~eGHiK-i~DFGmcK  498 (683)
T KOG0696         468 SKGIIYRDLKLDNVMLDSEGHIK-IADFGMCK  498 (683)
T ss_pred             CCCEEEEECCCCCEEECCCCCEE-EEECCCCC
T ss_conf             27716640321206763678567-61336420


No 470
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=55.55  E-value=15  Score=16.72  Aligned_cols=73  Identities=27%  Similarity=0.320  Sum_probs=40.5

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCC-CC---------C--HHHC--CHHHHHHHHHHCCCCCCCHHHHH----HHHHH
Q ss_conf             40223464225627-960487316213-56---------8--0001--98999986431168887878899----99988
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CN---------D--FLMY--DLSICINAWCFDENNTYNPSRGF----SILNG  247 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~---------~--~~i~--DLAi~i~~~c~~~~~~~d~~~~~----~~l~g  247 (316)
                      ==||=|.||+|++. |++- -|||++. +.         +  |+..  |++..++     . |.-+.+.++    -...|
T Consensus       206 gIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~~~~re~~PF~lt~em~~v~~-----~-GG~~S~~f~~F~~lc~~a  278 (354)
T cd05177         206 GVCDRHNDNIMLTHSGHMF-HIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFIT-----E-GGKKPQRFQRFVELCCRA  278 (354)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----C-CCCCCHHHHHHHHHHHHH
T ss_conf             1466577855798998789-98503540677656787778899866899999996-----6-898967799999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHH
Q ss_conf             7641889989999999999
Q gi|254780795|r  248 YNKVRKISENELQSLPTLL  266 (316)
Q Consensus       248 Y~~vrpLs~~E~~~l~~ll  266 (316)
                      |..+|+=+..=+..+-.|+
T Consensus       279 y~~lRk~~~lilnLf~LM~  297 (354)
T cd05177         279 YNIVRKHSQLLLNLLEMML  297 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999871889999999984


No 471
>pfam08909 DUF1854 Domain of unknown function (DUF1854). This potential domain is functionally uncharacterized. It is found at the C-terminus of a number of ATP transporter proteins suggesting this domain may be involved in ligand binding.
Probab=53.89  E-value=16  Score=16.55  Aligned_cols=42  Identities=14%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             HHHHHHHH-HCCCCCEEEEEECCCCCEEEEEEEEECCCC--EEEE
Q ss_conf             99999998-489986053100466812001799943995--8999
Q gi|254780795|r   10 KEIQSFVQ-EYAIGQLNSVQPIIHGVENSNFVIQTSKGT--FILT   51 (316)
Q Consensus        10 ~el~~il~-~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~--yiLr   51 (316)
                      +-+++-|+ +|-..++..+..|+.-...+.|-|.|+.|.  |+++
T Consensus        46 ~lie~~La~reF~PeI~rI~~Vs~~~~p~~W~V~TdrG~~~f~lk   90 (133)
T pfam08909        46 KLLEEELAYREFMPEILRINSVSSFATPSTWTVETDRGETKFVLK   90 (133)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEEE
T ss_conf             999999975676501799999725557627999956871899998


No 472
>pfam04767 Pox_F17 DNA-binding 11 kDa phosphoprotein. Family of poxvirus proteins required for virus morphogenesis. Protein function necessary for proteolytic processing of the major viral structural proteins, P4a and P4b.
Probab=53.57  E-value=9.8  Score=17.89  Aligned_cols=20  Identities=30%  Similarity=0.730  Sum_probs=15.7

Q ss_pred             CCEEEEEEEEECCCCE-EEEE
Q ss_conf             8120017999439958-9998
Q gi|254780795|r   33 GVENSNFVIQTSKGTF-ILTI   52 (316)
Q Consensus        33 G~~Ntny~v~t~~~~y-iLri   52 (316)
                      |+.++-|.|.|++|+| |||-
T Consensus         1 ~~~~~PFiint~eGRyLVLKa   21 (98)
T pfam04767         1 GYAHTPFIINTKEGRYLVLKA   21 (98)
T ss_pred             CCCCCCEEEECCCCEEEEEEE
T ss_conf             965587588725760888888


No 473
>KOG4721 consensus
Probab=53.00  E-value=6.7  Score=18.97  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             EEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             4402234642256279604873162135
Q gi|254780795|r  186 IIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +||.||..-|||+.-+.++-|=||+-+.
T Consensus       233 IIHRDLKSPNiLIs~~d~VKIsDFGTS~  260 (904)
T KOG4721         233 IIHRDLKSPNILISYDDVVKISDFGTSK  260 (904)
T ss_pred             HHHHCCCCCCEEEECCCEEEECCCCCHH
T ss_conf             7662058986676516527740465347


No 474
>KOG1290 consensus
Probab=52.95  E-value=9.1  Score=18.12  Aligned_cols=48  Identities=15%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             EECCCCCEEEEEEEEECC-CCEE-EEEECC--CCCHHHHHHHHHHHHHHHHCC
Q ss_conf             004668120017999439-9589-998216--699889999999999985326
Q gi|254780795|r   28 QPIIHGVENSNFVIQTSK-GTFI-LTIYEK--RMNEKDLPVFIELLHYISRNK   76 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~~-~~yi-Lri~e~--~~~~~~l~~~~~ll~~L~~~g   76 (316)
                      +.+.=|-=-|.|+-.-.+ .+|| |||-..  +.++..+ -||.+|+..+...
T Consensus        84 rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAl-DEIklL~~v~~~D  135 (590)
T KOG1290          84 RKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAAL-DEIKLLQQVREGD  135 (590)
T ss_pred             EECCCCCCCEEEEEEECCCCEEEEEEEEEHHHHHHHHHH-HHHHHHHHHHHCC
T ss_conf             841665432057776526772799998731667888788-9999999987259


No 475
>KOG0604 consensus
Probab=52.61  E-value=17  Score=16.42  Aligned_cols=54  Identities=30%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC---CCEEEECCCCCCCCHHHCCHHH
Q ss_conf             788999999988876521077744402234642256279---6048731621356800019899
Q gi|254780795|r  163 LKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN---KIMGLIDFYFSCNDFLMYDLSI  223 (316)
Q Consensus       163 ~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~---~i~giIDF~~~~~~~~i~DLAi  223 (316)
                      +.+.|...+..+..       ..+-|.|+.|.|+|+.+.   -+.-+-||+||-....-.+|-.
T Consensus       166 I~~qI~~Av~~lH~-------~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~T  222 (400)
T KOG0604         166 IMKQIGLAVRYLHS-------MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMT  222 (400)
T ss_pred             HHHHHHHHHHHHHH-------CCHHHCCCCHHHEEEECCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             99999999999986-------4213213776663430378986257225552025677764247


No 476
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=51.82  E-value=10  Score=17.84  Aligned_cols=72  Identities=21%  Similarity=0.161  Sum_probs=36.0

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCC-CCCHHH----CC-----HHHHHHHHHHCCCC--CCCHHHHH-HHHHHHHHCC
Q ss_conf             40223464225627-960487316213-568000----19-----89999864311688--87878899-9998876418
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CNDFLM----YD-----LSICINAWCFDENN--TYNPSRGF-SILNGYNKVR  252 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~~~~i----~D-----LAi~i~~~c~~~~~--~~d~~~~~-~~l~gY~~vr  252 (316)
                      ==||=|.||+|.+. |++- -|||++. +..+.-    .|     |.--+.+ .+...+  .-.-.++. -..+||..+|
T Consensus       205 gIgDRHndNIml~~~Ghlf-HIDFG~~Lg~~~~~~~~kre~~PFklt~emv~-vmgGg~~~s~~f~~F~~lc~~ay~~lR  282 (353)
T cd05176         205 GICDRHNDNIMLRSTGHMF-HIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAY-VINGGEKPTIRFQLFVDLCCQAYNLIR  282 (353)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             2466678855787998789-98764015778666888868999766899999-972888775779999999999999999


Q ss_pred             CCCHHHHH
Q ss_conf             89989999
Q gi|254780795|r  253 KISENELQ  260 (316)
Q Consensus       253 pLs~~E~~  260 (316)
                      +=...=+.
T Consensus       283 k~~~lil~  290 (353)
T cd05176         283 KHSNLFLN  290 (353)
T ss_pred             HHHHHHHH
T ss_conf             85999999


No 477
>KOG0589 consensus
Probab=51.38  E-value=17  Score=16.29  Aligned_cols=131  Identities=17%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             EEEE--ECCCCEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC-CEEEEECCCCCCCCCCC
Q ss_conf             7999--4399589998216-699889999999999985326775551001026778752245-15578647887076899
Q gi|254780795|r   39 FVIQ--TSKGTFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK-PANIFSFIKGSPLNHIS  114 (316)
Q Consensus        39 y~v~--t~~~~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k-~~~L~~~i~G~~~~~~~  114 (316)
                      ++|.  .++..||||..+- +.+..+=..-+.-+.-|++  +.-|.+|.-++   ....++. -+.++.|.+|-...+  
T Consensus        21 ~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~--~~hP~iv~y~d---s~~~~~~~l~Ivm~Y~eGg~l~~--   93 (426)
T KOG0589          21 LLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSK--LLHPNIVEYKD---SFEEDGQLLCIVMEYCEGGDLAQ--   93 (426)
T ss_pred             HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCCEEEECC---CHHCCCCEEEEEEEECCCCCHHH--
T ss_conf             320102678517999874155673456789989999973--46987564234---31007856898886357988999--


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf             89999999986436753068754332311245645766752001552278899999998887652107774440223464
Q gi|254780795|r  115 DIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPD  194 (316)
Q Consensus       115 ~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~  194 (316)
                               .+.+--  ...|+-.+     +.+|               .-.+.-.+..+.       ...+.|.|+...
T Consensus        94 ---------~i~~~k--~~~f~E~~-----i~~~---------------~~Q~~~av~ylH-------~~~iLHRDlK~~  135 (426)
T KOG0589          94 ---------LIKEQK--GVLFPEER-----ILKW---------------FVQILLAVNYLH-------ENRVLHRDLKCA  135 (426)
T ss_pred             ---------HHHHHH--HCCCCHHH-----HHHH---------------HHHHHHHHHHHH-------HHHHHCCCCHHH
T ss_conf             ---------999875--03461999-----9999---------------999999999987-------641002200565


Q ss_pred             CEEECCCCCEEEECCCCCCC
Q ss_conf             22562796048731621356
Q gi|254780795|r  195 NVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       195 NiL~~~~~i~giIDF~~~~~  214 (316)
                      ||+..+++..-+=||+-|-.
T Consensus       136 Nifltk~~~VkLgDfGlaK~  155 (426)
T KOG0589         136 NIFLTKDKKVKLGDFGLAKI  155 (426)
T ss_pred             HHHCCCCCCEEECCHHHHHH
T ss_conf             53204468644233235443


No 478
>KOG1240 consensus
Probab=51.06  E-value=11  Score=17.54  Aligned_cols=18  Identities=11%  Similarity=0.337  Sum_probs=10.9

Q ss_pred             EEEECCCCEEEEEECCCC
Q ss_conf             999439958999821669
Q gi|254780795|r   40 VIQTSKGTFILTIYEKRM   57 (316)
Q Consensus        40 ~v~t~~~~yiLri~e~~~   57 (316)
                      +-.+.+|..|.|+|-++.
T Consensus        41 r~k~~eG~vVvKVFvk~~   58 (1431)
T KOG1240          41 RAKDREGLVVVKVFVKQD   58 (1431)
T ss_pred             HCCCCCCEEEEEEEECCC
T ss_conf             315778549999995259


No 479
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=50.88  E-value=9.3  Score=18.05  Aligned_cols=77  Identities=18%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCC-CCCCH----HHCC-----HHHHHHHHHHCCCC--CCCHHHHH-HHHHHHHHCC
Q ss_conf             40223464225627-96048731621-35680----0019-----89999864311688--87878899-9998876418
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYF-SCNDF----LMYD-----LSICINAWCFDENN--TYNPSRGF-SILNGYNKVR  252 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~-~~~~~----~i~D-----LAi~i~~~c~~~~~--~~d~~~~~-~~l~gY~~vr  252 (316)
                      ==||=|.+|+|+++ +++. -|||++ .+..+    .-+|     |.--+.+ .+...+  +-.-..+. -..+||..+|
T Consensus       205 gIgDRHn~NImi~~~Ghlf-HIDFG~~Lg~~~~~g~~~~e~~PFklt~em~~-vmggg~~~s~~f~~F~~lc~~ay~~lR  282 (353)
T cd05166         205 GICDRHNDNIMLTKSGHMF-HIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAY-VINGGDKPTQRFQDFVDLCCRAYNIIR  282 (353)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             2566678864688998589-98644664688766898878999766799999-980799875779999999999999999


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             8998999999999
Q gi|254780795|r  253 KISENELQSLPTL  265 (316)
Q Consensus       253 pLs~~E~~~l~~l  265 (316)
                      +=+..=+..+-.|
T Consensus       283 k~~~~ii~L~~lM  295 (353)
T cd05166         283 KHANLLLNLLRMM  295 (353)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9899999999997


No 480
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=50.51  E-value=9.6  Score=17.96  Aligned_cols=74  Identities=20%  Similarity=0.180  Sum_probs=40.1

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCCC------------CHHHC--CHHHHHHHHHHCCCCCCCHH---HHH-HHHHH
Q ss_conf             40223464225627-96048731621356------------80001--98999986431168887878---899-99988
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN------------DFLMY--DLSICINAWCFDENNTYNPS---RGF-SILNG  247 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~------------~~~i~--DLAi~i~~~c~~~~~~~d~~---~~~-~~l~g  247 (316)
                      ==||=|.||+|++. |++- -|||++.--            .|+..  |.+-++.     ..+.-+.+   +++ -..+|
T Consensus       211 gIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~lt~e~~~vm~-----~g~~~~s~~f~~F~~lc~~a  284 (362)
T cd05173         211 GIGDRHSDNIMVRKNGQLF-HIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQ-----QGKTGNTEKFGRFRQYCEDA  284 (362)
T ss_pred             CCCCCCCCCEEECCCCEEE-EEECHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH-----CCCCCCCHHHHHHHHHHHHH
T ss_conf             2466678855798987399-98745653457678998878999877899999996-----48998877899999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHH
Q ss_conf             7641889989999999999
Q gi|254780795|r  248 YNKVRKISENELQSLPTLL  266 (316)
Q Consensus       248 Y~~vrpLs~~E~~~l~~ll  266 (316)
                      |..+|+=...=+..+-.|+
T Consensus       285 y~~lRk~~~lii~L~~lMl  303 (362)
T cd05173         285 YLILRKNGNLFITLFALML  303 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999987899999999998


No 481
>KOG4645 consensus
Probab=47.67  E-value=14  Score=16.95  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=22.6

Q ss_pred             CCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             7744402234642256279604873162135
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      ..|++|.|..+.|++.+.+.+.-.-||+-|.
T Consensus      1352 ~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ 1382 (1509)
T KOG4645        1352 EHGIVHRDIKPANILLDFNGLIKYGDFGSAV 1382 (1509)
T ss_pred             HCCCEECCCCCCCEEEECCCCEEEECCCCEE
T ss_conf             6672213777556045137847740355315


No 482
>KOG1094 consensus
Probab=47.39  E-value=11  Score=17.65  Aligned_cols=29  Identities=28%  Similarity=0.361  Sum_probs=23.9

Q ss_pred             CEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             44402234642256279604873162135
Q gi|254780795|r  185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      .++|+|+-+.|+|++++--.-|-||+.+.
T Consensus       657 nfVHrd~a~rNcLv~~e~~iKiadfgmsR  685 (807)
T KOG1094         657 NFVHRDLATRNCLVDGEFTIKIADFGMSR  685 (807)
T ss_pred             CHHHCCCCCCCEEECCCCCEEECCCCCCC
T ss_conf             22311453003566475307964765323


No 483
>KOG0574 consensus
Probab=46.93  E-value=10  Score=17.75  Aligned_cols=13  Identities=15%  Similarity=0.227  Sum_probs=6.0

Q ss_pred             CCCCCCCCCCCHH
Q ss_conf             6775551001026
Q gi|254780795|r   76 KLPCPIPIPRNDG   88 (316)
Q Consensus        76 gipvP~pi~~~~G   88 (316)
                      .|..-.++.+.+|
T Consensus       154 DIKAGNILLNT~G  166 (502)
T KOG0574         154 DIKAGNILLNTDG  166 (502)
T ss_pred             HCCCCCEEECCCC
T ss_conf             3112627874644


No 484
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and 
Probab=46.79  E-value=12  Score=17.44  Aligned_cols=77  Identities=12%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCCCCCCHHHC-----C-----HHHHHHHHHHCCCCCCCHH---HHH-HHHHHHHHC
Q ss_conf             40223464225627-9604873162135680001-----9-----8999986431168887878---899-999887641
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMY-----D-----LSICINAWCFDENNTYNPS---RGF-SILNGYNKV  251 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~-----D-----LAi~i~~~c~~~~~~~d~~---~~~-~~l~gY~~v  251 (316)
                      ==||=|.||+|++. +++- -|||++.--++.-+     |     |.--+.+ .+...|.-+.+   +++ -...||..+
T Consensus       215 GIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~Lt~em~~-vmg~~gg~~S~~f~~F~~lC~~ay~~l  292 (365)
T cd00894         215 GIGDRHNDNIMITETGNLF-HIDFGHILGNYKSFLGINKERVPFVLTPDFLF-VMGTSGKKTSLHFQKFQDVCVKAYLAL  292 (365)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             2455567753588988789-98417741899876887778898657899999-970478988777999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             88998999999999
Q gi|254780795|r  252 RKISENELQSLPTL  265 (316)
Q Consensus       252 rpLs~~E~~~l~~l  265 (316)
                      |+=+..=+..+-.|
T Consensus       293 Rk~~~liinLf~lM  306 (365)
T cd00894         293 RHHTNLLIILFSMM  306 (365)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99899999999999


No 485
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=46.73  E-value=12  Score=17.30  Aligned_cols=73  Identities=19%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             EECCCCCCCEEECC-CCCEEEECCCC-CCCC-----------HHHC--CHHHHHHHHHHCCCC--CCCHHHHH-HHHHHH
Q ss_conf             40223464225627-96048731621-3568-----------0001--989999864311688--87878899-999887
Q gi|254780795|r  187 IHADLFPDNVLFYN-NKIMGLIDFYF-SCND-----------FLMY--DLSICINAWCFDENN--TYNPSRGF-SILNGY  248 (316)
Q Consensus       187 IHgDl~~~NiL~~~-~~i~giIDF~~-~~~~-----------~~i~--DLAi~i~~~c~~~~~--~~d~~~~~-~~l~gY  248 (316)
                      ==||=|.||+|++. |++- -|||++ .+..           |+.+  |.+.++     ...+  +-.-.++. -...||
T Consensus       206 gIgDRHndNIml~~~Ghlf-HIDFG~iLg~~~~~~~~k~e~~PFklt~em~~vm-----gGg~~~s~~f~~F~~lc~~ay  279 (354)
T cd00895         206 GICDRHNDNIMLKTTGHMF-HIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVI-----NGGDKPSSRFHDFVDLCCQAY  279 (354)
T ss_pred             CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH-----CCCCCCCHHHHHHHHHHHHHH
T ss_conf             1356687845787999889-8733455336876789887889876678999997-----089988777999999999999


Q ss_pred             HHCCCCCHHHHHHHHHH
Q ss_conf             64188998999999999
Q gi|254780795|r  249 NKVRKISENELQSLPTL  265 (316)
Q Consensus       249 ~~vrpLs~~E~~~l~~l  265 (316)
                      ..+|+=+..=+..+-.|
T Consensus       280 ~~lRk~~~lil~L~~LM  296 (354)
T cd00895         280 NLIRKHTHLFLNLLGLM  296 (354)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99998699999999998


No 486
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870    The family of proteins found in this family include the characterised LysX from Thermus thermophilus  which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=46.03  E-value=21  Score=15.76  Aligned_cols=37  Identities=16%  Similarity=0.141  Sum_probs=22.1

Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHC---CCCEEEEECCCCC
Q ss_conf             9853267755510010267787522---4515578647887
Q gi|254780795|r   71 YISRNKLPCPIPIPRNDGKLYGFLC---KKPANIFSFIKGS  108 (316)
Q Consensus        71 ~L~~~gipvP~pi~~~~G~~~~~~~---~k~~~L~~~i~G~  108 (316)
                      .|+++|+|+|+-.-.-|.+.-..+.   |-|+++=| ..|+
T Consensus        95 ~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP-~~GS  134 (289)
T TIGR02144        95 KLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKP-VIGS  134 (289)
T ss_pred             HHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEC-CCCC
T ss_conf             999667889835898286899999997089889708-8884


No 487
>pfam05445 Pox_ser-thr_kin Poxvirus serine/threonine protein kinase.
Probab=45.65  E-value=15  Score=16.67  Aligned_cols=20  Identities=50%  Similarity=1.036  Sum_probs=15.3

Q ss_pred             CCC--CCEEECCCCCCCEEECC
Q ss_conf             077--74440223464225627
Q gi|254780795|r  181 NLP--TGIIHADLFPDNVLFYN  200 (316)
Q Consensus       181 ~Lp--~g~IHgDl~~~NiL~~~  200 (316)
                      +||  .-++|.|+.|||||+=+
T Consensus       293 elp~c~nF~H~DLKPdNILiFd  314 (434)
T pfam05445       293 ELPDCTNFLHVDLKPDNILIFD  314 (434)
T ss_pred             CCCCCCEEEECCCCCCCEEEEC
T ss_conf             2787523676157777289836


No 488
>COG0397 Uncharacterized conserved protein [Function unknown]
Probab=44.06  E-value=22  Score=15.57  Aligned_cols=121  Identities=13%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             HHHHHCCCCCCCCCCC-CHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHH-----HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9985326775551001-02677875224515578647887076899899999-----99986436753068754332311
Q gi|254780795|r   70 HYISRNKLPCPIPIPR-NDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE-----IGSMLASMHQKTKNFHLYRKNTL  143 (316)
Q Consensus        70 ~~L~~~gipvP~pi~~-~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~-----lG~~La~lH~~~~~f~~~r~~~~  143 (316)
                      +.+..-|||..+.+.- ..|..+..=...|++++..+.-.++.--+-+....     .-+.||..- +.           
T Consensus       142 EAmh~LGIpTTRaL~lv~tg~~v~Re~~ep~Avl~R~A~ShIRfGtFe~f~~~~~~e~l~~LaD~v-I~-----------  209 (488)
T COG0397         142 EALHALGIPTTRALSLVETGEPVQREDEEPSAVLTRLAPSHIRFGTFERFAYRDRRDLLRQLADHV-IE-----------  209 (488)
T ss_pred             HHHHHCCCCCCCEEEEECCCCCEECCCCCCCEEEEEECCCCEEEECCCHHHHCCCHHHHHHHHHHH-HH-----------
T ss_conf             999974899721035651798433156566447997412204552000455438769999999999-98-----------


Q ss_pred             CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC----EEEECCCC
Q ss_conf             2456457667520---01552278899999998887652107774440223464225627960----48731621
Q gi|254780795|r  144 SPLNLKFLWAKCF---DKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKI----MGLIDFYF  211 (316)
Q Consensus       144 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i----~giIDF~~  211 (316)
                            ..+..+.   ++....+.+.+.+....+...|.   ..|+|||=+|.||+-+.|..+    .|++|=++
T Consensus       210 ------~~~p~~~~~~e~~Y~~~fr~Vv~R~A~lvA~Wq---a~GF~HGVmNTDNmSI~GeTiDYGP~aFld~yd  275 (488)
T COG0397         210 ------HYFPDLADESERPYAALFRAVVSRSARLVARWM---AAGFVHGVLNTDNMSITGETFDYGPFAFLDRYD  275 (488)
T ss_pred             ------HHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCCEECCCCCEEECCCCCCCCEECCCCCC
T ss_conf             ------866031035765199999999999999999999---703010001258842322400466610145788


No 489
>KOG1095 consensus
Probab=43.08  E-value=13  Score=17.09  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=27.1

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
                      +.+||-|+-.-|+|.+..+++-|-||+.|.
T Consensus       821 ~~fvHRDLAaRNCLL~~~r~VKIaDFGlAr  850 (1025)
T KOG1095         821 KHFVHRDLAARNCLLDERRVVKIADFGLAR  850 (1025)
T ss_pred             CCCCCCCHHHHHEEECCCCCEEECCCCHHH
T ss_conf             797675510443232156747874441137


No 490
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078   This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=41.17  E-value=20  Score=15.91  Aligned_cols=88  Identities=24%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             99999848998605310046681200179994399589998216699889999999999985326775551001026778
Q gi|254780795|r   12 IQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY   91 (316)
Q Consensus        12 l~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~   91 (316)
                      ++++|+++++|++..+.|-.||+            +||=.+-    ..+.-+|--+|-+.|++..    +++|   |.++
T Consensus        45 ~~~~le~~~~G~~~T~~GAaGGv------------~YiP~~~----~~~~~~fv~~l~~~l~~s~----Ri~P---Ggfl  101 (269)
T TIGR01743        45 IKEVLEKFDIGKLETVPGAAGGV------------KYIPEVS----EKEAKEFVEELCEKLSESE----RILP---GGFL  101 (269)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCE------------EEECCCC----CHHHHHHHHHHHHHHCCCC----CCCC---CCHH
T ss_conf             99985006886478614788970------------5845646----0456889999998622888----4037---7475


Q ss_pred             HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH----------HHCCCCCC
Q ss_conf             75224515578647887076899899999999864367----------53068754
Q gi|254780795|r   92 GFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMH----------QKTKNFHL  137 (316)
Q Consensus        92 ~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH----------~~~~~f~~  137 (316)
                      -.        ..       ---+|.-+..+|+.||+.=          .+++|.|+
T Consensus       102 Y~--------~D-------ll~~Psi~ski~~ila~~F~d~~ID~V~TV~TKGvPL  142 (269)
T TIGR01743       102 YL--------TD-------LLFKPSILSKIGKILASVFIDKEIDAVMTVETKGVPL  142 (269)
T ss_pred             HH--------HH-------HHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
T ss_conf             55--------34-------5417815777888875432685578789952188238


No 491
>KOG0194 consensus
Probab=41.05  E-value=25  Score=15.27  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCCCCH
Q ss_conf             744402234642256279604873162135680
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF  216 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~  216 (316)
                      +++||-|+-.-|+|+..+.+.-|=||+.+..+.
T Consensus       281 k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~  313 (474)
T KOG0194         281 KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS  313 (474)
T ss_pred             CCCCCHHHHHHHHEECCCCEEEECCCCCCCCCC
T ss_conf             798536576787052279857867665665774


No 492
>KOG4279 consensus
Probab=40.99  E-value=25  Score=15.27  Aligned_cols=77  Identities=23%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CEEECCCCCCCEEECC-CCCEEEECCCCCC-------------------------CCHHHCCHHHHHHHH-HHC---CCC
Q ss_conf             4440223464225627-9604873162135-------------------------680001989999864-311---688
Q gi|254780795|r  185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC-------------------------NDFLMYDLSICINAW-CFD---ENN  234 (316)
Q Consensus       185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~-------------------------~~~~i~DLAi~i~~~-c~~---~~~  234 (316)
                      .++|.|..-||||++- ..|.-|=||+-+-                         .|++-|--|--|..+ |..   ..|
T Consensus       695 ~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATG  774 (1226)
T KOG4279         695 KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATG  774 (1226)
T ss_pred             CEEECCCCCCCEEEEECCCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHCHHHHCCCCCCCCCHHHHHHCCCEEEEECCC
T ss_conf             44530356770798603434885136530232167864110221116318576633876778355544136536763048


Q ss_pred             C-----CCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             8-----78788999998876418899899999
Q gi|254780795|r  235 T-----YNPSRGFSILNGYNKVRKISENELQS  261 (316)
Q Consensus       235 ~-----~d~~~~~~~l~gY~~vrpLs~~E~~~  261 (316)
                      .     +-..++.-|--|.-++.|--++|+.+
T Consensus       775 rPPF~ElgspqAAMFkVGmyKvHP~iPeelsa  806 (1226)
T KOG4279         775 RPPFVELGSPQAAMFKVGMYKVHPPIPEELSA  806 (1226)
T ss_pred             CCCEEECCCHHHHHHHHCCEECCCCCCHHHHH
T ss_conf             99843468826756430401038999477889


No 493
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=39.91  E-value=20  Score=15.89  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             EEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             7999439958999821669988999999999998532677555100102
Q gi|254780795|r   39 FVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRND   87 (316)
Q Consensus        39 y~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~   87 (316)
                      +.|-+=.++.+||- |.|....      +-+.-|.+.|+|.|+.+.+-+
T Consensus       105 ~~VP~FGNR~lLrw-Eer~~~~------~~~~LLe~Agi~~Pk~~~~Pe  146 (363)
T PRK13277        105 FPVPIFGNRYLLRW-EERTGEK------NYYRLLEKAGIPRPRTFKPPE  146 (363)
T ss_pred             CCCCEECCHHHHHH-CCCCHHH------HHHHHHHHCCCCCCCCCCCHH
T ss_conf             88871147566322-3451167------899999867999870059966


No 494
>KOG0662 consensus
Probab=39.73  E-value=26  Score=15.14  Aligned_cols=29  Identities=34%  Similarity=0.581  Sum_probs=22.8

Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf             74440223464225627960487316213
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS  212 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~  212 (316)
                      ..+.|.|+.|.|+|.+.+.-.-+-||+-+
T Consensus       120 hnvlhrdlkpqnllin~ngelkladfgla  148 (292)
T KOG0662         120 HNVLHRDLKPQNLLINRNGELKLADFGLA  148 (292)
T ss_pred             HHHHHCCCCCCEEEECCCCCEEECCCCHH
T ss_conf             24664037711077536883875000335


No 495
>COG1693 Repressor of nif and glnA expression [Transcription]
Probab=39.56  E-value=14  Score=16.80  Aligned_cols=84  Identities=18%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             77089999999998489986053100466812001799943995899982166998899999999999853267755510
Q gi|254780795|r    4 YTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPI   83 (316)
Q Consensus         4 yt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi   83 (316)
                      -|+.-.+|++.-+..|-+|.+.|  .|-.=+-+|||--+|-+|+-|+-+.  .++..+++-.++++.....+|+.+..-+
T Consensus        66 iTe~Gl~el~~~~~~~R~g~~~S--rIeem~y~t~fdp~t~~G~Vv~N~s--~i~k~dfedvl~iv~~~~~~GlsisprV  141 (325)
T COG1693          66 ITEKGLKELKRALISERLGFISS--RIEEMAYRTNFDPETLKGKVVVNIS--VIDKSDFEDVLDIVKEVISSGLSISPRV  141 (325)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHCCCEEEEEEE--EECHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             42756999865466777788999--9999988614780104762888778--8649899999999999986677767725


Q ss_pred             CCCHHHHH
Q ss_conf             01026778
Q gi|254780795|r   84 PRNDGKLY   91 (316)
Q Consensus        84 ~~~~G~~~   91 (316)
                      +-..|...
T Consensus       142 ~i~E~ds~  149 (325)
T COG1693         142 KIIEGDSE  149 (325)
T ss_pred             EEEECCCC
T ss_conf             77503666


No 496
>pfam11080 DUF2622 Protein of unknown function (DUF2622). This family is conserved in the Enterobacteriaceae family. Several members are named as YdiZ, a putative cytoplasmic protein. The function is not known.
Probab=38.79  E-value=27  Score=15.05  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=44.2

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99589998216699889999999999985326775551001026778752245155786478870768998999999998
Q gi|254780795|r   45 KGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSM  124 (316)
Q Consensus        45 ~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~  124 (316)
                      -.+||+++   +..++-|.-..++-.||...||-  .-+.+-+|. .++++-..|.+.+        ..+++.++++++.
T Consensus         6 itryVVtv---~~hE~~LtdineLnn~ltr~GF~--~TltD~eG~-pHeLgtNtFgliS--------al~~~eV~~La~g   71 (96)
T pfam11080         6 ITRYVVTV---KFHEDSLTEINELNNHLTRSGFL--LTLTDEEGN-PHELGTNTFGLIS--------ALSAQEVKALAAG   71 (96)
T ss_pred             CEEEEEEE---EECCCCHHHHHHHHHHHHCCCEE--EEEECCCCC-CCCCCCCCEEEEC--------CCCHHHHHHHHHH
T ss_conf             16999999---98003167899998787416516--786358998-2013466146541--------5899999999998


Q ss_pred             HHHHH
Q ss_conf             64367
Q gi|254780795|r  125 LASMH  129 (316)
Q Consensus       125 La~lH  129 (316)
                      ||+--
T Consensus        72 L~e~A   76 (96)
T pfam11080        72 LAQSA   76 (96)
T ss_pred             HHHHH
T ss_conf             88986


No 497
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator; InterPro: IPR014290   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents proteins belonging to the Rtf2 family of transcriptional regulators and are found, typically, as the first gene of the SUF operon. They are found only in a subset of the genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role..
Probab=37.91  E-value=13  Score=17.04  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCE-EEEEECCCCCEEEEEEEEECCCCEEEEEE
Q ss_conf             65770899999999984899860-53100466812001799943995899982
Q gi|254780795|r    2 AVYTHPPQKEIQSFVQEYAIGQL-NSVQPIIHGVENSNFVIQTSKGTFILTIY   53 (316)
Q Consensus         2 aVyt~ls~~el~~il~~y~lg~~-~~~~~i~~G~~Ntny~v~t~~~~yiLri~   53 (316)
                      |=+|.|+-.-.+++|+.-..+.+ .|-+|+.||+.    ++...+.-=|++|.
T Consensus        32 A~~tgL~~pTvsK~Lk~L~~A~lV~S~RGv~GGY~----La~~~~~itv~~Iv   80 (130)
T TIGR02944        32 AEQTGLEAPTVSKILKALSEAGLVTSKRGVEGGYT----LARAPEDITVADIV   80 (130)
T ss_pred             HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH----HHCCCCCCCHHHHH
T ss_conf             86459886047899887642875324346430046----20054554365454


No 498
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=37.74  E-value=28  Score=14.94  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHC--CCCCHHHHH
Q ss_conf             99999999999999999987608851231--126879999
Q gi|254780795|r  262 LPTLLRGAALRFFLTRLYDSQNMPCNALT--ITKDPMEYI  299 (316)
Q Consensus       262 l~~ll~~aalRf~lsrl~d~~~~~~~~~~--~~kdp~~~~  299 (316)
                      +++++-  +-|||++|.+  ++...+.|.  -+-.|+||.
T Consensus       461 ~evl~e--tArFW~srv~--~~~~~~~y~I~gV~GPdEY~  496 (772)
T COG1554         461 LEVLLE--TARFWASRVH--FSDRNGRYEIHGVTGPDEYH  496 (772)
T ss_pred             HHHHHH--HHHHHHHHHE--ECCCCCEEEEECCCCCHHHH
T ss_conf             999999--9999987705--51569869990576852543


No 499
>TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972   This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's.   Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes.    The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . .
Probab=37.22  E-value=29  Score=14.89  Aligned_cols=82  Identities=9%  Similarity=0.075  Sum_probs=51.4

Q ss_pred             CEEEEEE-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC-CCCCCC--CCCCHHHHHHHH
Q ss_conf             5899982-166998899999999999853267755510010267787522451557864-788707--689989999999
Q gi|254780795|r   47 TFILTIY-EKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF-IKGSPL--NHISDIHCEEIG  122 (316)
Q Consensus        47 ~yiLri~-e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~-i~G~~~--~~~~~~~~~~lG  122 (316)
                      .|-.++- ++=+..+-||=-.++|+.|++++++|.-.=.++|...+.+-=+ -.-=|.+ +++..+  .+|+|+..-..+
T Consensus        78 ~~Y~~LlD~~lTp~d~LPGi~~lL~~Lk~~~ikialASaSkNA~~vLekL~-L~~~Fd~IvDp~~~~~gKPdPEIFL~AA  156 (190)
T TIGR01990        78 DYYVELLDKELTPEDVLPGIKSLLEDLKKKNIKIALASASKNAPTVLEKLE-LRDYFDAIVDPAEIKKGKPDPEIFLAAA  156 (190)
T ss_pred             HHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH-HHHCCCEEECHHHHCCCCCCHHHHHHHH
T ss_conf             999999750689866040189999999984894887302344899999821-4220422645456217877867999999


Q ss_pred             HHHHHHH
Q ss_conf             9864367
Q gi|254780795|r  123 SMLASMH  129 (316)
Q Consensus       123 ~~La~lH  129 (316)
                      +.||=-=
T Consensus       157 ~~LGv~P  163 (190)
T TIGR01990       157 EGLGVSP  163 (190)
T ss_pred             HHCCCCH
T ss_conf             7638975


No 500
>KOG0906 consensus
Probab=36.63  E-value=12  Score=17.44  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=37.7

Q ss_pred             ECCCCCCCEEECC-CCCEEEECCCCC-CCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHH----HHHHHHCCCCC
Q ss_conf             0223464225627-960487316213-56800019899998643116888787889999----98876418899
Q gi|254780795|r  188 HADLFPDNVLFYN-NKIMGLIDFYFS-CNDFLMYDLSICINAWCFDENNTYNPSRGFSI----LNGYNKVRKIS  255 (316)
Q Consensus       188 HgDl~~~NiL~~~-~~i~giIDF~~~-~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~----l~gY~~vrpLs  255 (316)
                      -||=|.||++..+ ++.- -|||++. +.||--+--.+.++.=..+.-|.-....++.|    -.+|...|.=+
T Consensus       698 vGDRhldNLllT~dGk~F-HiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRss  770 (843)
T KOG0906         698 VGDRHLDNLLLTKDGKLF-HIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSS  770 (843)
T ss_pred             CCCCCCCCEEECCCCCEE-EEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             467776756873588379-8752223167999999843258999998546345889999999999999999852


Done!