Query gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 316 No_of_seqs 219 out of 1394 Neff 8.1 Searched_HMMs 39220 Date Sun May 29 19:13:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780795.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK05231 homoserine kinase; Pr 100.0 0 0 700.5 30.4 315 1-316 1-319 (319) 2 TIGR00938 thrB_alt homoserine 100.0 0 0 676.4 20.9 304 1-304 1-312 (312) 3 cd05153 HomoserineK_II Homoser 100.0 0 0 632.8 27.9 296 9-305 1-296 (296) 4 COG2334 Putative homoserine ki 100.0 0 0 439.6 28.0 313 1-316 5-328 (331) 5 PRK06149 hypothetical protein; 100.0 0 0 321.2 26.2 302 6-315 16-342 (972) 6 PRK06148 hypothetical protein; 100.0 0 0 316.9 25.7 300 6-315 10-334 (1015) 7 TIGR02906 spore_CotS spore coa 100.0 1.8E-31 4.6E-36 223.3 19.5 256 38-303 12-305 (321) 8 pfam01636 APH Phosphotransfera 100.0 1.3E-30 3.3E-35 217.8 15.5 216 27-250 2-230 (239) 9 PRK11768 serine/threonine prot 100.0 1.6E-28 4.2E-33 204.2 23.8 296 3-312 7-320 (326) 10 cd05154 ACAD10_11_like Acyl-Co 99.9 2.4E-26 6.2E-31 190.1 14.5 200 26-228 2-220 (223) 11 cd05120 APH_ChoK_like Aminogly 99.9 1.2E-25 3.2E-30 185.5 13.1 147 26-228 2-152 (155) 12 pfam03881 Fructosamin_kin Fruc 99.9 3.1E-20 7.8E-25 150.6 20.7 222 23-265 17-257 (287) 13 cd05151 ChoK Choline Kinase (C 99.9 1.8E-21 4.5E-26 158.6 14.1 165 25-253 1-169 (170) 14 cd05156 ChoK_euk Choline Kinas 99.9 5.6E-20 1.4E-24 148.9 19.5 226 26-264 2-282 (302) 15 COG3173 Predicted aminoglycosi 99.9 9.4E-20 2.4E-24 147.5 19.8 244 6-256 7-274 (321) 16 cd05157 ETNK_euk Ethanolamine 99.9 4.3E-20 1.1E-24 149.7 15.8 193 25-229 1-216 (235) 17 cd05155 APH_ChoK_like_1 Unchar 99.9 6.2E-20 1.6E-24 148.6 16.1 205 27-249 2-221 (235) 18 TIGR02721 ycfN_thiK thiamine k 99.7 5E-17 1.3E-21 129.8 13.0 202 29-256 3-214 (262) 19 cd05152 MPH2' Macrolide 2'-Pho 99.7 1.6E-16 4.2E-21 126.5 15.0 217 15-252 3-246 (276) 20 COG3001 Uncharacterized protei 99.7 7.6E-16 1.9E-20 122.2 17.7 226 15-263 9-256 (286) 21 TIGR02904 spore_ysxE spore coa 99.7 7.8E-16 2E-20 122.1 16.1 245 12-266 1-277 (313) 22 cd05150 APH Aminoglycoside 3'- 99.7 1.6E-15 4.1E-20 120.1 17.0 224 29-265 5-239 (244) 23 pfam01633 Choline_kinase Choli 99.7 5.2E-16 1.3E-20 123.3 13.9 176 45-233 2-191 (208) 24 PTZ00296 choline kinase; Provi 99.7 7E-14 1.8E-18 109.5 22.4 244 25-282 106-398 (439) 25 KOG2686 consensus 99.6 2.2E-13 5.5E-18 106.3 19.2 230 23-266 41-312 (366) 26 KOG4720 consensus 99.6 2.3E-12 6E-17 99.6 19.9 260 15-290 75-367 (391) 27 PRK01723 3-deoxy-D-manno-octul 99.4 3.9E-12 9.9E-17 98.2 12.1 166 27-252 39-238 (240) 28 PRK09605 O-sialoglycoprotein e 99.4 7.9E-12 2E-16 96.2 13.0 131 62-254 385-518 (536) 29 COG3642 Mn2+-dependent serine/ 99.4 2.9E-11 7.5E-16 92.5 13.3 166 29-256 3-184 (204) 30 PRK09550 mtnK methylthioribose 99.3 2.1E-09 5.2E-14 80.6 21.4 212 3-225 1-261 (398) 31 COG0510 ycfN Thiamine kinase a 99.3 8.2E-11 2.1E-15 89.6 14.0 198 28-256 12-219 (269) 32 PRK12396 5-methylribose kinase 99.3 3.5E-10 9E-15 85.5 13.9 214 1-225 4-267 (409) 33 TIGR02172 Fb_sc_TIGR02172 Fibr 99.2 2.7E-10 6.9E-15 86.2 12.6 208 30-266 9-231 (234) 34 COG3231 Aph Aminoglycoside pho 99.2 3.8E-10 9.6E-15 85.3 13.1 218 37-266 34-262 (266) 35 COG3178 Predicted phosphotrans 99.2 1.4E-09 3.5E-14 81.7 15.6 216 58-287 63-307 (351) 36 pfam07914 DUF1679 Protein of u 99.2 9.8E-10 2.5E-14 82.6 13.8 254 5-263 11-358 (413) 37 PRK10271 thiK thiamine kinase; 99.2 2.8E-10 7.2E-15 86.1 10.5 139 101-259 2-142 (188) 38 KOG3021 consensus 99.2 9.1E-09 2.3E-13 76.4 17.7 224 15-260 5-276 (313) 39 TIGR02905 spore_yutH spore coa 99.2 6.4E-10 1.6E-14 83.8 11.6 236 43-288 26-299 (325) 40 pfam02958 DUF227 Domain of unk 99.1 2.5E-09 6.2E-14 80.1 10.5 150 98-251 91-283 (293) 41 smart00587 CHK ZnF_C4 abd HLH 99.0 8.6E-10 2.2E-14 83.0 7.6 143 106-251 13-189 (196) 42 cd05119 RIO RIO kinase family, 99.0 9.2E-09 2.3E-13 76.3 10.3 133 29-214 4-163 (187) 43 cd05144 RIO2_C RIO kinase fami 98.9 6.7E-08 1.7E-12 70.7 12.7 134 22-214 14-174 (198) 44 cd05147 RIO1_euk RIO kinase fa 98.8 8E-08 2E-12 70.2 10.7 133 30-214 5-166 (190) 45 cd05145 RIO1_like RIO kinase f 98.8 6.9E-08 1.8E-12 70.7 10.4 133 30-214 5-166 (190) 46 pfam06293 Kdo Lipopolysacchari 98.8 1.4E-07 3.5E-12 68.7 11.2 165 37-248 19-206 (206) 47 smart00090 RIO RIO-like kinase 98.8 1.9E-07 4.8E-12 67.9 11.6 156 3-214 11-197 (237) 48 cd05146 RIO3_euk RIO kinase fa 98.7 4.2E-07 1.1E-11 65.6 12.3 100 63-214 74-173 (197) 49 COG1718 RIO1 Serine/threonine 98.7 4.2E-07 1.1E-11 65.6 12.3 157 3-214 31-215 (268) 50 KOG3087 consensus 98.6 1.4E-06 3.6E-11 62.2 12.8 162 26-251 11-204 (229) 51 pfam01163 RIO1 RIO1 family. Th 98.6 3.4E-07 8.5E-12 66.2 7.9 97 63-214 54-152 (186) 52 pfam06176 WaaY Lipopolysacchar 98.5 2.1E-06 5.5E-11 61.0 11.5 163 2-217 11-184 (229) 53 COG0478 RIO-like serine/threon 98.5 1.7E-06 4.4E-11 61.7 10.8 128 29-214 98-251 (304) 54 PRK10359 lipopolysaccharide co 98.4 7E-06 1.8E-10 57.7 11.9 161 3-216 12-183 (232) 55 KOG2270 consensus 98.3 6.3E-06 1.6E-10 58.0 9.9 143 19-213 140-312 (520) 56 COG2187 Uncharacterized protei 98.3 1.7E-05 4.3E-10 55.2 11.8 155 112-272 123-296 (337) 57 TIGR01767 MTRK 5-methylthiorib 98.2 5.3E-06 1.3E-10 58.5 6.2 187 29-225 2-234 (386) 58 cd06614 STKc_PAK Serine/threon 98.2 6.6E-05 1.7E-09 51.4 11.6 154 11-213 7-165 (287) 59 cd06654 STKc_PAK1 Serine/threo 98.1 0.00023 5.8E-09 47.9 13.6 154 9-214 2-165 (296) 60 KOG2268 consensus 98.1 8.1E-06 2.1E-10 57.3 5.6 123 33-214 103-251 (465) 61 cd07836 STKc_Pho85 The catalyt 98.0 0.00017 4.2E-09 48.8 11.8 138 27-213 5-148 (284) 62 cd06612 STKc_MST1_2 Serine/thr 98.0 0.00017 4.2E-09 48.8 11.7 139 27-214 8-148 (256) 63 TIGR02457 TreS_Cterm trehalose 98.0 3.2E-05 8.3E-10 53.4 7.9 189 16-211 167-435 (568) 64 cd07865 STKc_CDK9 The catalyti 98.0 0.0002 5.2E-09 48.2 11.8 150 21-213 11-167 (310) 65 cd06658 STKc_PAK5 Serine/threo 98.0 0.00037 9.4E-09 46.5 12.7 155 7-213 2-166 (292) 66 cd07861 STKc_CDK1_euk The cata 98.0 0.00013 3.3E-09 49.5 10.3 139 27-213 5-149 (285) 67 cd06655 STKc_PAK2 Serine/threo 98.0 0.00029 7.4E-09 47.2 11.9 139 24-214 21-164 (296) 68 cd06656 STKc_PAK3 Serine/threo 98.0 0.00067 1.7E-08 44.9 13.7 138 24-213 21-163 (297) 69 cd07846 STKc_CDKL2_3 The catal 98.0 0.00018 4.6E-09 48.5 10.8 137 27-213 6-148 (286) 70 cd06639 STKc_myosinIIIB Serine 98.0 0.00019 4.7E-09 48.5 10.8 159 7-214 12-177 (291) 71 cd06657 STKc_PAK4 Serine/threo 98.0 0.00036 9.2E-09 46.6 12.2 137 26-214 24-165 (292) 72 cd07847 STKc_CDKL1_4 The catal 98.0 0.00021 5.3E-09 48.2 11.0 137 27-213 6-148 (286) 73 cd06648 STKc_PAK_II Serine/thr 98.0 0.00019 4.7E-09 48.5 10.8 137 25-213 22-163 (285) 74 cd06636 STKc_MAP4K4_6 Serine/t 97.9 0.00033 8.4E-09 46.9 11.5 149 21-214 15-170 (282) 75 cd00180 S_TKc Serine/Threonine 97.9 0.00032 8E-09 47.0 11.2 137 28-214 6-148 (256) 76 cd07860 STKc_CDK2_3 The cataly 97.9 0.00031 7.9E-09 47.0 10.8 137 27-213 5-148 (284) 77 cd07864 STKc_CDK12 The catalyt 97.9 0.00068 1.7E-08 44.8 12.4 145 27-213 12-164 (302) 78 cd07839 STKc_CDK5 The catalyti 97.8 0.00084 2.1E-08 44.2 12.4 137 27-213 5-147 (284) 79 cd06609 STKc_MST3_like Serine/ 97.8 0.00056 1.4E-08 45.4 11.4 135 28-213 7-146 (274) 80 cd06643 STKc_SLK Serine/threon 97.8 0.0008 2E-08 44.4 12.2 136 28-214 11-152 (282) 81 cd05610 STKc_MASTL STKc_MASTL: 97.8 0.00032 8.2E-09 46.9 10.0 144 21-214 3-153 (669) 82 cd05613 STKc_MSK1_N STKc_MSK1_ 97.8 0.00026 6.6E-09 47.5 9.4 136 28-213 6-153 (290) 83 cd07829 STKc_CDK_like The cata 97.8 0.00055 1.4E-08 45.4 11.1 137 27-213 4-146 (282) 84 cd06608 STKc_myosinIII_like Se 97.8 0.0008 2E-08 44.3 11.8 147 24-213 8-161 (275) 85 pfam04655 APH_6_hur Aminoglyco 97.8 0.002 5.1E-08 41.8 13.7 218 30-262 10-237 (253) 86 cd07866 STKc_BUR1 The catalyti 97.8 0.00056 1.4E-08 45.4 10.8 148 23-213 9-163 (311) 87 cd06647 STKc_PAK_I Serine/thre 97.8 0.00049 1.2E-08 45.8 10.5 139 24-213 21-163 (293) 88 cd06621 PKc_MAPKK_Pek1_like Pr 97.8 0.0012 3E-08 43.3 12.4 146 24-213 3-153 (287) 89 cd07843 STKc_CDC2L1 The cataly 97.8 0.00076 1.9E-08 44.5 11.3 139 26-213 9-154 (293) 90 PRK10593 hypothetical protein; 97.8 6.7E-05 1.7E-09 51.3 5.8 234 23-283 15-272 (297) 91 cd07841 STKc_CDK7 The catalyti 97.8 0.00071 1.8E-08 44.7 11.0 136 28-214 6-151 (298) 92 cd06641 STKc_MST3 Serine/threo 97.7 0.0006 1.5E-08 45.2 10.5 137 25-213 7-149 (277) 93 cd07833 STKc_CDKL The catalyti 97.7 0.00059 1.5E-08 45.2 10.4 138 27-214 6-149 (288) 94 cd06644 STKc_STK10_LOK Serine/ 97.7 0.002 5.1E-08 41.8 13.1 136 27-213 17-158 (292) 95 cd05611 STKc_Rim15_like STKc_R 97.7 0.0011 2.9E-08 43.4 11.8 139 28-215 2-147 (260) 96 cd07835 STKc_CDK1_like The cat 97.7 0.00073 1.9E-08 44.6 10.8 138 27-213 4-147 (283) 97 cd07848 STKc_CDKL5 The catalyt 97.7 0.00087 2.2E-08 44.1 11.0 136 28-213 7-148 (287) 98 cd06620 PKc_MAPKK_Byr1_like Pr 97.7 0.0019 4.9E-08 41.9 12.7 140 25-213 8-152 (284) 99 cd05572 STKc_cGK_PKG STKc_cGK_ 97.7 0.00089 2.3E-08 44.1 10.9 131 32-213 3-141 (262) 100 smart00220 S_TKc Serine/Threon 97.7 0.0016 4.1E-08 42.4 12.3 126 38-214 5-136 (244) 101 cd06606 STKc_MAPKKK Serine/thr 97.7 0.00057 1.5E-08 45.3 9.9 136 29-213 7-148 (259) 102 cd06637 STKc_TNIK Serine/threo 97.7 0.0012 3.1E-08 43.2 11.6 148 22-214 6-160 (272) 103 PTZ00263 protein kinase A cata 97.7 0.00069 1.8E-08 44.8 10.3 145 19-213 15-166 (329) 104 cd07838 STKc_CDK4_6_like The c 97.7 0.0011 2.9E-08 43.4 11.3 144 27-213 4-155 (287) 105 cd06640 STKc_MST4 Serine/threo 97.7 0.0012 3.1E-08 43.2 11.5 138 25-213 7-149 (277) 106 cd07874 STKc_JNK3 The catalyti 97.7 0.00048 1.2E-08 45.8 9.4 146 15-213 15-167 (355) 107 cd07844 STKc_PCTAIRE_like The 97.7 0.0018 4.6E-08 42.1 12.3 138 25-213 8-151 (291) 108 cd06642 STKc_STK25_YSK1 Serine 97.7 0.0011 2.8E-08 43.4 11.3 137 25-213 7-149 (277) 109 cd05578 STKc_Yank1 STKc_Yank1: 97.7 0.0013 3.4E-08 42.9 11.5 136 28-214 6-149 (258) 110 PRK04750 ubiB putative ubiquin 97.7 0.00035 9E-09 46.7 8.6 32 182-214 277-313 (540) 111 cd06607 STKc_TAO Serine/threon 97.7 0.00086 2.2E-08 44.2 10.5 153 11-213 3-163 (307) 112 cd05574 STKc_phototropin_like 97.7 0.0014 3.7E-08 42.7 11.6 134 27-213 6-151 (315) 113 cd05112 PTKc_Itk Catalytic Dom 97.7 0.0027 6.9E-08 40.9 13.0 141 24-213 6-148 (256) 114 cd06917 STKc_NAK1_like Serine/ 97.7 0.0016 4.1E-08 42.4 11.7 138 28-214 7-150 (277) 115 cd07831 STKc_MOK The catalytic 97.7 0.0014 3.7E-08 42.7 11.5 138 28-213 5-147 (282) 116 cd05122 PKc_STE Protein Kinase 97.7 0.00062 1.6E-08 45.1 9.6 136 28-213 6-145 (253) 117 cd05118 STKc_CMGC The catalyti 97.7 0.00034 8.7E-09 46.8 8.2 137 27-213 4-146 (283) 118 COG4857 Predicted kinase [Gene 97.7 0.00015 3.8E-09 49.1 6.4 45 184-229 228-273 (408) 119 cd06659 STKc_PAK6 Serine/threo 97.7 0.0021 5.3E-08 41.7 12.2 136 26-213 25-165 (297) 120 cd07832 STKc_CCRK The catalyti 97.7 0.0015 3.8E-08 42.6 11.4 136 28-213 6-147 (286) 121 cd05598 STKc_LATS STKc_LATS: S 97.6 0.0026 6.5E-08 41.1 12.5 136 27-212 6-148 (376) 122 KOG1235 consensus 97.6 0.0003 7.5E-09 47.2 7.5 33 182-214 318-354 (538) 123 cd07853 STKc_NLK The catalytic 97.6 0.00086 2.2E-08 44.2 9.6 140 27-213 5-151 (372) 124 cd06649 PKc_MEK2 MEK2 (MAPKK2 97.6 0.0053 1.3E-07 39.1 13.6 138 26-213 9-152 (331) 125 cd05577 STKc_GRK STKc_GRK: Ser 97.6 0.0011 2.9E-08 43.3 10.2 133 32-213 3-143 (277) 126 cd07840 STKc_CDK9_like The cat 97.6 0.0016 4.1E-08 42.4 10.9 139 27-213 4-148 (287) 127 cd06615 PKc_MEK MEK1/2 (MAPK k 97.6 0.0036 9.2E-08 40.1 12.7 139 26-213 5-148 (308) 128 cd05123 STKc_AGC STKc_AGC: Ser 97.6 0.0014 3.6E-08 42.8 10.6 131 32-213 3-141 (250) 129 cd05082 PTKc_Csk Catalytic Dom 97.6 0.0016 4E-08 42.5 10.9 148 27-221 11-158 (256) 130 pfam00069 Pkinase Protein kina 97.6 0.00087 2.2E-08 44.1 9.6 137 28-214 5-147 (260) 131 cd06638 STKc_myosinIIIA Serine 97.6 0.0025 6.3E-08 41.2 11.8 145 26-214 22-173 (286) 132 cd06626 STKc_MEKK4 Serine/thre 97.6 0.0012 3.1E-08 43.2 10.2 134 30-213 8-147 (264) 133 cd07845 STKc_CDK10 The catalyt 97.6 0.0012 3.1E-08 43.2 10.2 141 25-213 10-156 (309) 134 cd07863 STKc_CDK4 The catalyti 97.6 0.00094 2.4E-08 43.9 9.5 144 27-214 5-157 (288) 135 cd05059 PTKc_Tec_like Catalyti 97.6 0.0027 6.8E-08 41.0 11.8 141 24-213 6-148 (256) 136 cd05571 STKc_PKB STKc_PKB: Ser 97.6 0.0018 4.6E-08 42.1 10.9 134 31-214 4-144 (323) 137 cd07869 STKc_PFTAIRE1 The cata 97.6 0.0034 8.7E-08 40.3 12.3 137 26-213 9-151 (303) 138 COG0661 AarF Predicted unusual 97.6 0.00073 1.9E-08 44.6 8.8 33 182-214 282-314 (517) 139 cd06605 PKc_MAPKK Protein kina 97.6 0.0061 1.6E-07 38.7 13.6 142 25-214 4-150 (265) 140 cd05599 STKc_NDR_like STKc_NDR 97.6 0.0048 1.2E-07 39.3 13.0 137 27-213 6-149 (364) 141 cd05084 PTKc_Fes Catalytic Dom 97.6 0.0041 1.1E-07 39.8 12.6 135 30-213 3-142 (252) 142 cd05617 STKc_aPKC_zeta STKc_aP 97.6 0.001 2.6E-08 43.6 9.5 136 30-214 3-145 (327) 143 cd05629 STKc_NDR_like_fungal S 97.6 0.0054 1.4E-07 39.0 13.1 136 27-212 6-148 (377) 144 cd05614 STKc_MSK2_N STKc_MSK2_ 97.5 0.00082 2.1E-08 44.3 8.9 136 28-213 6-153 (332) 145 cd05626 STKc_LATS2 STKc_LATS2: 97.5 0.0033 8.3E-08 40.4 11.9 138 26-213 5-149 (381) 146 cd05618 STKc_aPKC_iota STKc_aP 97.5 0.0021 5.4E-08 41.6 10.9 135 31-214 4-145 (329) 147 cd06650 PKc_MEK1 MEK1 (MAPKK1 97.5 0.005 1.3E-07 39.2 12.7 140 25-213 8-152 (333) 148 cd05113 PTKc_Btk_Bmx Catalytic 97.5 0.0018 4.5E-08 42.1 10.4 139 26-213 8-148 (256) 149 cd06616 PKc_MKK4 Protein kinas 97.5 0.0077 2E-07 38.0 13.7 147 23-214 5-157 (288) 150 cd07867 STKc_CDC2L6 The cataly 97.5 0.00064 1.6E-08 45.0 8.1 143 30-213 9-160 (317) 151 cd06622 PKc_MAPKK_PBS2_like Pr 97.5 0.0028 7E-08 40.9 11.3 141 26-213 5-151 (286) 152 cd07855 STKc_ERK5 The catalyti 97.5 0.003 7.7E-08 40.6 11.5 142 25-212 8-156 (336) 153 cd06619 PKc_MKK5 Protein kinas 97.5 0.0019 4.9E-08 41.9 10.5 130 29-213 8-143 (279) 154 cd07830 STKc_MAK_like The cata 97.5 0.0012 3.1E-08 43.2 9.5 138 28-213 5-147 (283) 155 cd05625 STKc_LATS1 STKc_LATS1: 97.5 0.0039 1E-07 39.9 12.1 137 26-212 5-148 (382) 156 cd06610 STKc_OSR1_SPAK Serine/ 97.5 0.0021 5.2E-08 41.7 10.5 138 28-213 7-150 (266) 157 cd06633 STKc_TAO3 Serine/threo 97.5 0.0023 5.9E-08 41.4 10.6 155 10-214 8-170 (313) 158 cd06613 STKc_MAP4K3_like Serin 97.5 0.0029 7.3E-08 40.8 11.1 137 27-213 8-148 (261) 159 cd05601 STKc_CRIK STKc_CRIK: S 97.5 0.0069 1.7E-07 38.3 13.0 136 28-213 7-150 (330) 160 cd07872 STKc_PCTAIRE2 The cata 97.5 0.0074 1.9E-07 38.1 13.0 139 24-213 8-152 (309) 161 cd06645 STKc_MAP4K3 Serine/thr 97.5 0.0039 1E-07 39.9 11.6 137 27-213 14-154 (267) 162 cd06624 STKc_ASK Serine/threon 97.5 0.0062 1.6E-07 38.6 12.6 144 23-213 9-157 (268) 163 cd05041 PTKc_Fes_like Catalyti 97.5 0.0038 9.6E-08 40.0 11.4 136 29-213 2-141 (251) 164 cd05594 STKc_PKB_alpha STKc_PK 97.5 0.0026 6.6E-08 41.1 10.6 134 31-214 4-145 (324) 165 cd07875 STKc_JNK1 The catalyti 97.5 0.0025 6.3E-08 41.2 10.5 140 27-214 29-175 (364) 166 cd05621 STKc_ROCK2 STKc_ROCK2: 97.5 0.0017 4.4E-08 42.2 9.7 142 20-212 41-189 (370) 167 cd07870 STKc_PFTAIRE2 The cata 97.5 0.008 2E-07 37.9 13.1 138 25-213 8-151 (291) 168 cd05589 STKc_PKN STKc_PKN: Ser 97.5 0.0036 9.1E-08 40.1 11.3 140 27-214 4-150 (324) 169 cd07868 STKc_CDK8 The catalyti 97.5 0.00074 1.9E-08 44.6 7.8 143 30-213 9-160 (317) 170 smart00221 STYKc Protein kinas 97.5 0.0066 1.7E-07 38.4 12.6 138 28-214 5-147 (225) 171 cd05612 STKc_PRKX_like STKc_PR 97.5 0.0021 5.4E-08 41.6 10.1 136 27-213 6-149 (291) 172 PTZ00266 NIMA-related protein 97.5 0.0011 2.9E-08 43.4 8.6 156 21-213 8-177 (484) 173 cd07873 STKc_PCTAIRE1 The cata 97.4 0.007 1.8E-07 38.3 12.6 138 25-213 9-152 (301) 174 cd05052 PTKc_Abl Catalytic Dom 97.4 0.0042 1.1E-07 39.7 11.4 139 27-213 11-152 (263) 175 cd06627 STKc_Cdc7_like Serine/ 97.4 0.0037 9.5E-08 40.0 11.1 134 30-213 8-147 (254) 176 cd05580 STKc_PKA STKc_PKA: Ser 97.4 0.0033 8.3E-08 40.4 10.8 136 28-213 7-149 (290) 177 cd05582 STKc_RSK_N STKc_RSK_N: 97.4 0.0018 4.5E-08 42.1 9.4 136 28-213 2-146 (318) 178 cd07871 STKc_PCTAIRE3 The cata 97.4 0.0094 2.4E-07 37.4 13.1 138 25-213 8-151 (288) 179 cd05588 STKc_aPKC STKc_aPKC: S 97.4 0.0028 7.3E-08 40.8 10.5 135 30-214 3-145 (329) 180 cd05600 STKc_Sid2p_Dbf2p STKc_ 97.4 0.0064 1.6E-07 38.5 12.2 136 27-213 6-149 (333) 181 cd06611 STKc_SLK_like Serine/t 97.4 0.0051 1.3E-07 39.2 11.7 137 27-214 10-152 (280) 182 cd07856 STKc_Sty1_Hog1 The cat 97.4 0.0044 1.1E-07 39.6 11.3 141 23-214 11-157 (328) 183 cd06646 STKc_MAP4K5 Serine/thr 97.4 0.0064 1.6E-07 38.5 12.1 137 28-214 15-155 (267) 184 cd06632 STKc_MEKK1_plant Serin 97.4 0.0021 5.4E-08 41.6 9.7 135 30-214 8-151 (258) 185 cd05622 STKc_ROCK1 STKc_ROCK1: 97.4 0.0035 8.9E-08 40.2 10.7 139 23-213 44-190 (371) 186 cd05583 STKc_MSK_N STKc_MSK_N: 97.4 0.0026 6.6E-08 41.1 9.9 136 28-213 6-153 (288) 187 cd05581 STKc_PDK1 STKc_PDK1: S 97.4 0.0039 9.9E-08 39.9 10.8 137 28-213 7-150 (279) 188 cd05609 STKc_MAST STKc_MAST: S 97.4 0.0037 9.4E-08 40.1 10.6 136 27-213 6-149 (305) 189 cd06625 STKc_MEKK3_like Serine 97.4 0.0061 1.6E-07 38.6 11.7 140 18-213 3-152 (263) 190 cd05605 STKc_GRK4_like STKc_GR 97.4 0.0041 1.1E-07 39.7 10.8 138 28-213 6-150 (285) 191 cd05573 STKc_ROCK_NDR_like STK 97.4 0.0057 1.5E-07 38.8 11.5 137 27-213 6-149 (354) 192 cd05585 STKc_YPK1_like STKc_YP 97.4 0.0054 1.4E-07 39.0 11.4 133 32-214 3-142 (312) 193 cd05072 PTKc_Lyn Catalytic Dom 97.4 0.0092 2.4E-07 37.5 12.5 142 24-213 8-151 (261) 194 cd07849 STKc_ERK1_2_like The c 97.4 0.0036 9.2E-08 40.1 10.4 141 25-213 8-154 (336) 195 cd06634 STKc_TAO2 Serine/threo 97.4 0.0063 1.6E-07 38.6 11.6 139 25-213 18-163 (308) 196 cd05627 STKc_NDR2 STKc_NDR2: S 97.4 0.013 3.4E-07 36.4 13.3 137 27-213 6-149 (360) 197 cd06623 PKc_MAPKK_plant_like P 97.4 0.011 2.8E-07 37.0 12.8 139 27-214 6-149 (264) 198 cd05593 STKc_PKB_gamma STKc_PK 97.4 0.0046 1.2E-07 39.4 10.8 132 32-214 5-144 (325) 199 cd05085 PTKc_Fer Catalytic Dom 97.4 0.0094 2.4E-07 37.4 12.3 133 32-213 5-141 (250) 200 cd06631 STKc_YSK4 Serine/threo 97.4 0.0032 8.2E-08 40.5 9.9 132 32-213 10-150 (265) 201 cd06618 PKc_MKK7 Protein kinas 97.3 0.014 3.7E-07 36.3 13.4 145 21-213 14-163 (296) 202 cd05570 STKc_PKC STKc_PKC: Ser 97.3 0.0082 2.1E-07 37.8 11.8 135 30-213 3-144 (318) 203 PRK13184 pknD serine/threonine 97.3 0.0043 1.1E-07 39.6 10.3 145 28-212 8-160 (933) 204 cd05633 STKc_GRK3 STKc_GRK3: S 97.3 0.0042 1.1E-07 39.7 10.2 135 32-213 4-145 (279) 205 cd07854 STKc_MAPK4_6 The catal 97.3 0.0046 1.2E-07 39.5 10.4 147 23-213 6-163 (342) 206 cd07850 STKc_JNK The catalytic 97.3 0.0059 1.5E-07 38.7 10.9 143 15-213 14-166 (353) 207 cd05595 STKc_PKB_beta STKc_PKB 97.3 0.0079 2E-07 37.9 11.5 133 31-214 4-144 (323) 208 cd05608 STKc_GRK1 STKc_GRK1: S 97.3 0.0081 2.1E-07 37.9 11.6 135 33-213 4-145 (280) 209 KOG0578 consensus 97.3 0.0048 1.2E-07 39.3 10.4 153 7-215 253-419 (550) 210 cd05114 PTKc_Tec_Rlk Catalytic 97.3 0.0049 1.3E-07 39.2 10.4 141 24-213 6-148 (256) 211 cd07878 STKc_p38beta_MAPK11 Th 97.3 0.01 2.6E-07 37.2 12.0 143 25-214 18-167 (343) 212 cd06653 STKc_MEKK3_like_1 Seri 97.3 0.0023 5.8E-08 41.4 8.6 135 30-213 10-154 (264) 213 cd05591 STKc_nPKC_epsilon STKc 97.3 0.0035 8.9E-08 40.2 9.6 134 31-213 4-144 (321) 214 cd05584 STKc_p70S6K STKc_p70S6 97.3 0.0045 1.2E-07 39.5 10.1 135 28-213 2-148 (323) 215 cd07879 STKc_p38delta_MAPK13 T 97.3 0.0055 1.4E-07 38.9 10.6 142 25-214 18-166 (342) 216 cd07880 STKc_p38gamma_MAPK12 T 97.3 0.005 1.3E-07 39.2 10.3 143 25-214 18-167 (343) 217 cd07862 STKc_CDK6 The catalyti 97.3 0.011 2.7E-07 37.1 12.0 143 27-213 6-158 (290) 218 pfam07714 Pkinase_Tyr Protein 97.3 0.0092 2.4E-07 37.5 11.6 136 29-213 6-150 (258) 219 cd07852 STKc_MAPK15 The cataly 97.3 0.002 5.1E-08 41.8 8.2 143 14-212 4-154 (337) 220 cd05592 STKc_nPKC_theta_delta 97.3 0.0033 8.4E-08 40.4 9.3 134 31-213 4-144 (316) 221 cd05587 STKc_cPKC STKc_cPKC: 97.3 0.0061 1.6E-07 38.6 10.6 137 27-213 5-149 (324) 222 cd06635 STKc_TAO1 Serine/threo 97.3 0.0024 6.2E-08 41.2 8.5 157 7-214 9-174 (317) 223 cd07851 STKc_p38 The catalytic 97.3 0.011 2.7E-07 37.1 11.8 142 25-213 18-166 (343) 224 cd05068 PTKc_Frk_like Catalyti 97.3 0.011 2.7E-07 37.1 11.7 141 25-213 9-151 (261) 225 cd05039 PTKc_Csk_like Catalyti 97.3 0.0041 1.1E-07 39.7 9.5 140 28-215 12-152 (256) 226 cd05623 STKc_MRCK_alpha STKc_M 97.2 0.01 2.6E-07 37.2 11.5 136 27-212 6-149 (332) 227 cd05038 PTKc_Jak_rpt2 Catalyti 97.2 0.015 3.8E-07 36.1 12.4 143 24-213 6-157 (279) 228 cd05603 STKc_SGK2 STKc_SGK2: S 97.2 0.0059 1.5E-07 38.7 10.1 135 30-214 3-145 (321) 229 PTZ00284 protein kinase; Provi 97.2 0.015 3.8E-07 36.2 12.1 32 184-216 251-299 (467) 230 cd06628 STKc_MAPKKK_Byr2_like 97.2 0.005 1.3E-07 39.2 9.7 132 32-213 10-154 (267) 231 cd06651 STKc_MEKK3 Serine/thre 97.2 0.0028 7.1E-08 40.9 8.4 142 18-213 3-154 (266) 232 cd05083 PTKc_Chk Catalytic Dom 97.2 0.016 4.2E-07 35.9 12.3 139 30-217 14-152 (254) 233 KOG0592 consensus 97.2 0.00082 2.1E-08 44.3 5.5 134 30-214 81-223 (604) 234 cd05624 STKc_MRCK_beta STKc_MR 97.2 0.016 4E-07 36.0 12.0 137 27-212 6-149 (331) 235 cd05034 PTKc_Src_like Catalyti 97.2 0.014 3.6E-07 36.3 11.8 139 27-213 11-151 (261) 236 cd07858 STKc_TEY_MAPK_plant Th 97.2 0.005 1.3E-07 39.2 9.4 142 25-213 8-156 (337) 237 COG3281 Ble Uncharacterized pr 97.2 0.0015 3.9E-08 42.5 6.7 199 47-252 108-381 (438) 238 cd05586 STKc_Sck1_like STKc_Sc 97.2 0.01 2.6E-07 37.2 10.8 134 32-213 3-144 (330) 239 cd05606 STKc_beta_ARK STKc_bet 97.1 0.012 3E-07 36.8 11.0 134 32-213 4-145 (278) 240 cd07834 STKc_MAPK The catalyti 97.1 0.0075 1.9E-07 38.1 9.9 137 28-212 6-150 (330) 241 cd00192 PTKc Catalytic Domain 97.1 0.02 5.1E-07 35.3 11.8 142 30-213 3-152 (261) 242 cd05615 STKc_cPKC_alpha STKc_c 97.1 0.0061 1.5E-07 38.7 9.1 136 28-213 6-149 (323) 243 cd05604 STKc_SGK3 STKc_SGK3: S 97.1 0.011 2.9E-07 36.9 10.4 134 31-214 4-145 (325) 244 cd05607 STKc_GRK7 STKc_GRK7: S 97.1 0.0092 2.4E-07 37.5 9.9 132 33-213 4-143 (277) 245 smart00219 TyrKc Tyrosine kina 97.1 0.015 3.9E-07 36.1 11.0 136 30-213 7-151 (258) 246 cd06652 STKc_MEKK2 Serine/thre 97.1 0.0064 1.6E-07 38.5 8.9 143 18-213 3-154 (265) 247 cd05628 STKc_NDR1 STKc_NDR1: S 97.0 0.029 7.4E-07 34.3 13.2 135 27-212 6-148 (363) 248 cd07842 STKc_CDK8_like The cat 97.0 0.0092 2.4E-07 37.5 9.6 141 28-213 6-160 (315) 249 cd05619 STKc_nPKC_theta STKc_n 97.0 0.01 2.6E-07 37.2 9.7 135 30-213 3-144 (316) 250 cd07837 STKc_CdkB_plant The ca 97.0 0.0079 2E-07 37.9 9.1 144 27-213 6-159 (295) 251 cd05073 PTKc_Hck Catalytic Dom 97.0 0.026 6.7E-07 34.5 11.8 138 27-213 11-150 (260) 252 cd05631 STKc_GRK4 STKc_GRK4: S 97.0 0.019 4.7E-07 35.5 11.0 137 27-213 5-150 (285) 253 cd05616 STKc_cPKC_beta STKc_cP 97.0 0.0084 2.2E-07 37.7 9.0 136 28-213 6-149 (323) 254 cd05602 STKc_SGK1 STKc_SGK1: S 97.0 0.01 2.7E-07 37.1 9.5 133 31-213 4-144 (325) 255 cd05590 STKc_nPKC_eta STKc_nPK 97.0 0.02 5E-07 35.4 10.9 134 31-213 4-144 (320) 256 cd05632 STKc_GRK5 STKc_GRK5: S 97.0 0.016 4.1E-07 35.9 10.4 138 27-213 5-150 (285) 257 cd07859 STKc_TDY_MAPK_plant Th 97.0 0.018 4.7E-07 35.6 10.7 139 28-213 6-151 (338) 258 cd05046 PTK_CCK4 Catalytic Dom 97.0 0.033 8.3E-07 33.9 12.8 150 23-213 6-165 (275) 259 cd05070 PTKc_Fyn_Yrk Catalytic 97.0 0.033 8.4E-07 33.9 12.3 142 23-213 7-150 (260) 260 cd05575 STKc_SGK STKc_SGK: Ser 97.0 0.014 3.5E-07 36.4 9.9 134 30-213 3-144 (323) 261 cd05630 STKc_GRK6 STKc_GRK6: S 96.9 0.025 6.4E-07 34.7 11.1 138 27-213 5-150 (285) 262 KOG0615 consensus 96.9 0.0047 1.2E-07 39.4 7.3 31 183-213 294-327 (475) 263 cd05579 STKc_MAST_like STKc_MA 96.9 0.02 5.1E-07 35.3 10.3 133 31-213 2-141 (265) 264 cd07877 STKc_p38alpha_MAPK14 T 96.9 0.016 4.1E-07 35.9 9.7 143 25-214 20-169 (345) 265 cd05576 STKc_RPK118_like STKc_ 96.9 0.015 3.8E-07 36.1 9.4 124 37-213 8-133 (237) 266 cd05596 STKc_ROCK STKc_ROCK: S 96.9 0.0089 2.3E-07 37.6 8.2 140 22-212 43-189 (370) 267 cd05620 STKc_nPKC_delta STKc_n 96.8 0.02 5.1E-07 35.3 9.8 133 31-213 4-144 (316) 268 PTZ00283 serine/threonine prot 96.8 0.028 7.2E-07 34.3 10.5 137 30-213 40-191 (496) 269 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 96.8 0.046 1.2E-06 32.9 12.5 144 24-214 6-157 (284) 270 cd05067 PTKc_Lck_Blk Catalytic 96.8 0.048 1.2E-06 32.9 12.2 141 24-213 8-150 (260) 271 PRK12274 serine/threonine prot 96.7 0.011 2.9E-07 36.9 8.0 81 184-277 90-173 (198) 272 cd05088 PTKc_Tie2 Catalytic Do 96.7 0.051 1.3E-06 32.7 12.2 149 28-213 13-172 (303) 273 KOG0605 consensus 96.7 0.02 5.1E-07 35.3 9.2 28 184-212 260-288 (550) 274 TIGR01982 UbiB 2-polyprenylphe 96.7 0.0022 5.5E-08 41.6 4.2 47 181-228 284-337 (452) 275 KOG0667 consensus 96.7 0.0024 6E-08 41.3 4.3 31 184-215 308-341 (586) 276 cd05045 PTKc_RET Catalytic Dom 96.7 0.055 1.4E-06 32.5 11.9 30 184-213 141-170 (285) 277 cd05148 PTKc_Srm_Brk Catalytic 96.7 0.056 1.4E-06 32.4 12.7 139 27-213 11-152 (261) 278 cd05060 PTKc_Syk_like Catalyti 96.7 0.057 1.5E-06 32.4 11.9 133 30-213 3-143 (257) 279 cd05057 PTKc_EGFR_like Catalyt 96.7 0.058 1.5E-06 32.3 13.5 139 25-213 10-157 (279) 280 cd06617 PKc_MKK3_6 Protein kin 96.7 0.058 1.5E-06 32.3 13.3 141 27-213 6-152 (280) 281 cd05050 PTKc_Musk Catalytic Do 96.6 0.021 5.3E-07 35.2 8.8 163 23-213 6-178 (288) 282 cd05053 PTKc_FGFR Catalytic Do 96.6 0.049 1.2E-06 32.8 10.6 149 28-213 18-181 (294) 283 cd05049 PTKc_Trk Catalytic Dom 96.6 0.031 7.8E-07 34.1 9.5 151 27-213 10-170 (280) 284 cd05048 PTKc_Ror Catalytic Dom 96.6 0.038 9.7E-07 33.5 9.9 155 23-213 6-172 (283) 285 cd05090 PTKc_Ror1 Catalytic Do 96.6 0.053 1.4E-06 32.6 10.4 153 23-213 6-172 (283) 286 cd05032 PTKc_InsR_like Catalyt 96.5 0.071 1.8E-06 31.7 13.0 149 25-213 9-167 (277) 287 KOG1166 consensus 96.5 0.038 9.8E-07 33.5 9.3 51 160-213 792-849 (974) 288 KOG0603 consensus 96.4 0.0057 1.5E-07 38.8 4.8 34 184-218 434-469 (612) 289 cd05071 PTKc_Src Catalytic Dom 96.4 0.081 2.1E-06 31.4 12.1 138 27-213 11-150 (262) 290 cd05040 PTKc_Ack_like Catalyti 96.4 0.084 2.1E-06 31.3 12.5 135 30-213 3-145 (257) 291 KOG0581 consensus 96.4 0.039 1E-06 33.4 8.8 29 184-213 198-227 (364) 292 cd05109 PTKc_HER2 Catalytic Do 96.3 0.093 2.4E-06 31.0 13.7 140 24-213 9-157 (279) 293 cd05063 PTKc_EphR_A2 Catalytic 96.3 0.096 2.5E-06 30.9 11.9 137 28-213 11-155 (268) 294 cd05055 PTKc_PDGFR Catalytic D 96.2 0.064 1.6E-06 32.0 9.3 139 28-213 41-189 (302) 295 cd05042 PTKc_Aatyk Catalytic D 96.2 0.11 2.8E-06 30.5 12.3 40 166-212 108-147 (269) 296 cd05080 PTKc_Tyk2_rpt2 Catalyt 96.2 0.11 2.8E-06 30.5 12.5 140 24-213 6-155 (283) 297 cd05069 PTKc_Yes Catalytic Dom 96.2 0.11 2.8E-06 30.5 12.9 138 27-213 11-150 (260) 298 KOG0032 consensus 96.1 0.077 2E-06 31.5 9.2 144 16-217 34-191 (382) 299 cd05079 PTKc_Jak1_rpt2 Catalyt 96.0 0.14 3.5E-06 29.9 13.3 142 24-213 6-157 (284) 300 cd07876 STKc_JNK2 The catalyti 96.0 0.017 4.4E-07 35.7 5.3 146 15-213 19-171 (359) 301 KOG2269 consensus 95.9 0.043 1.1E-06 33.2 7.0 76 185-263 404-492 (531) 302 cd05597 STKc_DMPK_like STKc_DM 95.9 0.023 5.8E-07 35.0 5.5 135 28-212 7-149 (331) 303 cd05047 PTKc_Tie Catalytic Dom 95.8 0.16 4E-06 29.5 12.1 145 32-213 5-160 (270) 304 cd05110 PTKc_HER4 Catalytic Do 95.8 0.16 4.1E-06 29.5 12.2 140 24-213 9-157 (303) 305 cd05086 PTKc_Aatyk2 Catalytic 95.8 0.16 4.2E-06 29.4 12.5 29 184-212 118-146 (268) 306 cd05062 PTKc_IGF-1R Catalytic 95.7 0.18 4.5E-06 29.2 12.1 30 184-213 138-167 (277) 307 cd05065 PTKc_EphR_B Catalytic 95.7 0.18 4.5E-06 29.2 11.0 137 28-213 10-154 (269) 308 KOG0595 consensus 95.7 0.12 3.1E-06 30.2 8.8 137 28-214 16-164 (429) 309 cd05051 PTKc_DDR Catalytic Dom 95.6 0.19 4.8E-06 29.0 13.1 127 48-213 49-178 (296) 310 cd05044 PTKc_c-ros Catalytic D 95.6 0.19 4.9E-06 28.9 12.0 124 47-213 28-160 (270) 311 cd06629 STKc_MAPKKK_Bck1_like 95.5 0.032 8.2E-07 34.0 5.3 136 31-216 10-159 (272) 312 KOG0616 consensus 95.5 0.17 4.4E-06 29.2 8.9 146 19-213 41-192 (355) 313 cd05056 PTKc_FAK Catalytic Dom 95.4 0.045 1.2E-06 33.0 5.8 135 29-213 13-155 (270) 314 cd05061 PTKc_InsR Catalytic Do 95.4 0.22 5.7E-06 28.5 13.0 148 26-213 10-167 (288) 315 KOG0610 consensus 95.4 0.19 4.8E-06 29.0 8.8 137 27-214 82-228 (459) 316 cd07857 STKc_MPK1 The catalyti 95.3 0.032 8.3E-07 34.0 4.8 29 184-213 124-153 (332) 317 KOG0593 consensus 95.3 0.03 7.6E-07 34.2 4.5 29 185-213 121-149 (396) 318 cd05095 PTKc_DDR2 Catalytic Do 95.3 0.25 6.4E-06 28.2 12.9 30 184-213 149-178 (296) 319 pfam10009 DUF2252 Uncharacteri 95.2 0.016 4.1E-07 36.0 2.8 73 179-251 36-117 (383) 320 cd05096 PTKc_DDR1 Catalytic Do 95.2 0.27 6.8E-06 28.0 11.0 30 184-213 157-186 (304) 321 cd06630 STKc_MEKK1 Serine/thre 95.1 0.063 1.6E-06 32.1 5.7 134 30-213 8-152 (268) 322 cd05111 PTK_HER3 Pseudokinase 95.1 0.27 7E-06 28.0 13.2 141 23-213 8-157 (279) 323 cd05092 PTKc_TrkA Catalytic Do 95.1 0.28 7.1E-06 27.9 13.1 151 28-213 11-170 (280) 324 KOG4250 consensus 95.0 0.21 5.5E-06 28.6 8.2 29 184-212 139-171 (732) 325 PTZ00024 cyclin-dependent prot 95.0 0.046 1.2E-06 33.0 4.8 133 30-213 16-159 (325) 326 cd05094 PTKc_TrkC Catalytic Do 95.0 0.017 4.2E-07 35.8 2.4 148 28-213 11-171 (291) 327 KOG0608 consensus 94.9 0.053 1.4E-06 32.6 4.7 30 183-213 747-777 (1034) 328 cd05066 PTKc_EphR_A Catalytic 94.8 0.095 2.4E-06 30.9 6.0 136 29-213 11-154 (267) 329 cd05108 PTKc_EGFR Catalytic Do 94.8 0.099 2.5E-06 30.8 6.0 136 28-213 13-157 (316) 330 cd05064 PTKc_EphR_A10 Catalyti 94.7 0.11 2.8E-06 30.5 6.0 30 184-213 126-155 (266) 331 cd05091 PTKc_Ror2 Catalytic Do 94.7 0.36 9.3E-06 27.2 10.8 153 23-213 6-172 (283) 332 cd05097 PTKc_DDR_like Catalyti 94.6 0.37 9.4E-06 27.1 12.6 30 184-213 148-177 (295) 333 COG2112 Predicted Ser/Thr prot 94.6 0.1 2.6E-06 30.7 5.7 134 19-213 19-154 (201) 334 KOG1035 consensus 94.6 0.056 1.4E-06 32.4 4.3 31 183-214 715-746 (1351) 335 cd05087 PTKc_Aatyk1_Aatyk3 Cat 94.6 0.38 9.7E-06 27.0 13.3 30 184-213 119-148 (269) 336 cd05115 PTKc_Zap-70 Catalytic 94.6 0.11 2.7E-06 30.6 5.7 116 48-213 25-143 (257) 337 cd05074 PTKc_Tyro3 Catalytic D 94.6 0.025 6.4E-07 34.7 2.5 30 184-213 132-161 (273) 338 cd05093 PTKc_TrkB Catalytic Do 94.5 0.026 6.7E-07 34.6 2.4 149 28-213 11-168 (288) 339 cd05099 PTKc_FGFR4 Catalytic D 94.5 0.4 1E-05 26.9 12.0 30 184-213 153-182 (314) 340 cd05058 PTKc_Met_Ron Catalytic 94.4 0.41 1.1E-05 26.8 12.4 30 184-213 117-146 (262) 341 cd05075 PTKc_Axl Catalytic Dom 94.2 0.035 8.9E-07 33.7 2.6 29 184-212 131-159 (272) 342 cd05103 PTKc_VEGFR2 Catalytic 94.2 0.45 1.1E-05 26.6 11.6 30 184-213 198-227 (343) 343 KOG0596 consensus 94.2 0.11 2.8E-06 30.5 5.1 29 184-213 479-507 (677) 344 cd05098 PTKc_FGFR1 Catalytic D 94.2 0.027 6.9E-07 34.4 2.0 153 27-213 23-188 (307) 345 cd05116 PTKc_Syk Catalytic Dom 94.2 0.1 2.6E-06 30.7 5.0 131 32-213 5-143 (257) 346 KOG0583 consensus 94.1 0.078 2E-06 31.5 4.1 32 184-216 139-172 (370) 347 cd05089 PTKc_Tie1 Catalytic Do 94.1 0.034 8.6E-07 33.8 2.2 150 29-213 9-167 (297) 348 cd05054 PTKc_VEGFR Catalytic D 94.0 0.033 8.4E-07 33.9 2.1 30 184-213 192-221 (337) 349 cd05035 PTKc_Axl_like Catalyti 93.7 0.045 1.1E-06 33.0 2.3 30 184-213 132-161 (273) 350 cd05033 PTKc_EphR Catalytic Do 93.7 0.58 1.5E-05 25.9 12.7 136 29-213 11-154 (266) 351 KOG0594 consensus 93.6 0.11 2.8E-06 30.5 4.2 146 26-213 15-168 (323) 352 KOG1164 consensus 93.6 0.59 1.5E-05 25.8 11.7 144 24-213 20-175 (322) 353 KOG0198 consensus 93.4 0.63 1.6E-05 25.6 11.8 138 29-213 24-166 (313) 354 cd05043 PTK_Ryk Pseudokinase D 93.4 0.062 1.6E-06 32.1 2.6 30 184-213 136-165 (280) 355 cd05101 PTKc_FGFR2 Catalytic D 93.1 0.048 1.2E-06 32.9 1.7 152 27-213 20-185 (304) 356 cd05100 PTKc_FGFR3 Catalytic D 93.1 0.065 1.7E-06 32.0 2.3 30 184-213 153-182 (334) 357 KOG0599 consensus 93.0 0.17 4.2E-06 29.4 4.4 31 184-214 142-172 (411) 358 KOG1152 consensus 93.0 0.14 3.6E-06 29.8 3.9 36 179-214 683-719 (772) 359 KOG1187 consensus 92.9 0.2 5.2E-06 28.8 4.7 161 7-217 65-229 (361) 360 COG3570 StrB Streptomycin 6-ki 92.9 0.75 1.9E-05 25.1 10.4 178 67-270 57-242 (274) 361 KOG0903 consensus 92.9 0.42 1.1E-05 26.8 6.3 95 188-285 699-842 (847) 362 KOG0192 consensus 92.6 0.42 1.1E-05 26.8 5.9 28 186-213 164-192 (362) 363 cd05102 PTKc_VEGFR3 Catalytic 92.4 0.096 2.4E-06 30.9 2.5 30 184-213 193-222 (338) 364 KOG0983 consensus 92.4 0.4 1E-05 26.9 5.6 30 183-213 210-240 (391) 365 KOG0659 consensus 92.4 0.72 1.8E-05 25.2 6.9 31 184-214 120-150 (318) 366 KOG0612 consensus 92.2 0.38 9.7E-06 27.0 5.3 28 184-212 194-222 (1317) 367 cd05078 PTK_Jak2_Jak3_rpt1 Pse 92.0 0.4 1E-05 26.9 5.2 30 184-213 119-156 (258) 368 KOG1989 consensus 91.9 0.99 2.5E-05 24.3 12.1 147 29-219 44-200 (738) 369 cd05036 PTKc_ALK_LTK Catalytic 91.9 0.1 2.6E-06 30.7 2.1 30 184-213 135-167 (277) 370 COG4320 Uncharacterized protei 91.8 0.5 1.3E-05 26.2 5.5 16 207-222 85-100 (410) 371 KOG0585 consensus 91.6 0.12 3.1E-06 30.3 2.2 30 184-213 229-258 (576) 372 TIGR02569 TIGR02569_actnb cons 91.4 0.075 1.9E-06 31.6 1.0 201 60-287 43-264 (279) 373 KOG0984 consensus 91.3 0.57 1.4E-05 25.9 5.4 80 184-273 168-250 (282) 374 cd05037 PTK_Jak_rpt1 Pseudokin 91.3 0.57 1.5E-05 25.9 5.4 30 184-213 120-156 (259) 375 KOG0670 consensus 91.1 0.53 1.3E-05 26.1 5.1 31 184-214 555-586 (752) 376 cd05167 PI4Kc_III_alpha Phosph 90.9 1.2 3.2E-05 23.7 7.4 74 187-264 163-250 (311) 377 KOG0660 consensus 90.7 0.13 3.3E-06 30.1 1.7 32 184-215 144-175 (359) 378 KOG0575 consensus 90.7 0.57 1.5E-05 25.9 4.9 30 184-214 137-167 (592) 379 cd05106 PTKc_CSF-1R Catalytic 90.4 0.21 5.4E-06 28.7 2.5 30 184-213 231-260 (374) 380 PRK09902 hypothetical protein; 90.2 1.4 3.7E-05 23.3 8.6 201 1-250 1-215 (216) 381 KOG0598 consensus 90.2 0.44 1.1E-05 26.6 4.0 136 26-213 29-173 (357) 382 cd05169 PIKKc_TOR TOR (Target 90.2 1.1 2.7E-05 24.1 6.0 26 186-212 183-210 (280) 383 cd00893 PI4Kc_III Phosphoinosi 90.1 1.5 3.7E-05 23.2 6.9 26 187-213 142-168 (289) 384 KOG1167 consensus 90.1 0.36 9.2E-06 27.2 3.5 42 59-107 78-119 (418) 385 cd05107 PTKc_PDGFR_beta Cataly 90.1 0.19 4.9E-06 28.9 2.1 30 184-213 258-287 (401) 386 cd05105 PTKc_PDGFR_alpha Catal 89.9 0.2 5.2E-06 28.8 2.1 30 184-213 256-285 (400) 387 KOG1151 consensus 89.2 0.57 1.4E-05 25.9 4.0 29 185-213 590-621 (775) 388 PRK09188 serine/threonine prot 89.2 1.7 4.4E-05 22.8 6.9 37 96-132 91-131 (365) 389 KOG0665 consensus 89.1 0.21 5.4E-06 28.7 1.7 31 184-214 137-167 (369) 390 cd05076 PTK_Tyk2_rpt1 Pseudoki 89.1 0.85 2.2E-05 24.8 4.8 41 166-213 125-172 (274) 391 cd05077 PTK_Jak1_rpt1 Pseudoki 88.9 1.1 2.8E-05 24.0 5.3 41 165-212 112-159 (262) 392 cd07925 LigA_like_1 The A subu 88.6 1 2.7E-05 24.2 4.9 66 215-280 1-76 (106) 393 cd07921 PCA_45_Doxase_A_like S 88.6 1 2.6E-05 24.2 4.9 66 215-280 1-76 (106) 394 KOG2345 consensus 88.3 0.58 1.5E-05 25.9 3.5 33 185-217 149-181 (302) 395 KOG0658 consensus 88.2 0.31 8E-06 27.6 2.0 29 184-212 144-173 (364) 396 PRK13377 protocatechuate 4,5-d 88.0 1.1 2.8E-05 24.0 4.8 67 214-280 11-87 (129) 397 KOG0663 consensus 87.9 1.6 4.2E-05 22.9 5.6 33 185-217 197-230 (419) 398 cd07924 PCA_45_Doxase_A The A 87.6 1.1 2.9E-05 23.9 4.6 67 214-280 8-84 (121) 399 KOG0600 consensus 87.4 1 2.6E-05 24.2 4.3 31 183-213 236-266 (560) 400 PRK09897 hypothetical protein; 87.3 2.2 5.7E-05 22.1 6.0 16 299-314 351-366 (535) 401 PRK13378 protocatechuate 4,5-d 87.2 1.3 3.2E-05 23.7 4.7 66 215-280 12-87 (117) 402 KOG0584 consensus 87.2 0.57 1.5E-05 25.9 2.9 42 165-212 150-193 (632) 403 KOG1236 consensus 87.1 0.49 1.3E-05 26.3 2.5 75 185-268 365-452 (565) 404 cd05104 PTKc_Kit Catalytic Dom 86.6 0.46 1.2E-05 26.5 2.2 30 184-213 233-262 (375) 405 KOG0193 consensus 86.4 0.92 2.3E-05 24.6 3.6 31 184-215 507-538 (678) 406 PTZ00267 NIMA-related protein 86.3 0.39 1E-05 26.9 1.7 30 184-213 188-217 (478) 407 KOG3653 consensus 86.3 1.2 3.1E-05 23.8 4.1 88 183-282 334-425 (534) 408 KOG0668 consensus 85.4 0.86 2.2E-05 24.7 3.1 30 183-213 150-181 (338) 409 KOG0671 consensus 85.4 2.5 6.4E-05 21.7 5.4 32 185-217 212-264 (415) 410 KOG1163 consensus 84.8 3 7.7E-05 21.2 11.0 143 21-213 14-162 (341) 411 KOG1006 consensus 84.5 0.76 1.9E-05 25.1 2.5 42 185-229 188-230 (361) 412 KOG1027 consensus 84.5 0.67 1.7E-05 25.5 2.1 30 184-213 625-659 (903) 413 PRK00029 hypothetical protein; 84.4 3.1 8E-05 21.1 6.7 28 182-213 241-268 (487) 414 KOG0666 consensus 84.3 1.5 3.9E-05 23.2 3.9 146 14-213 21-184 (438) 415 COG5072 ALK1 Serine/threonine 83.8 0.58 1.5E-05 25.9 1.6 67 186-256 343-418 (488) 416 KOG0197 consensus 83.5 1.5 3.9E-05 23.1 3.7 78 184-261 322-435 (468) 417 KOG0586 consensus 83.4 1.5 3.8E-05 23.2 3.6 30 184-213 174-203 (596) 418 cd05124 AFK Actin-Fragmin Kina 82.3 3.3 8.5E-05 20.9 5.0 45 38-89 15-62 (238) 419 KOG0661 consensus 82.3 2.4 6.1E-05 21.9 4.3 99 162-266 111-223 (538) 420 KOG0664 consensus 82.0 0.8 2E-05 25.0 1.7 31 184-214 175-205 (449) 421 KOG0694 consensus 82.0 3.1 7.8E-05 21.2 4.7 38 184-222 487-525 (694) 422 PRK13379 protocatechuate 4,5-d 81.6 3.6 9.2E-05 20.7 5.0 66 214-279 12-87 (119) 423 KOG0577 consensus 80.9 4.2 0.00011 20.2 5.6 155 7-215 10-176 (948) 424 pfam07387 Seadorna_VP7 Seadorn 77.6 3.8 9.8E-05 20.5 4.1 85 116-209 103-187 (308) 425 KOG0588 consensus 76.6 2.8 7.2E-05 21.4 3.2 29 184-213 131-160 (786) 426 pfam02696 UPF0061 Uncharacteri 76.4 5.5 0.00014 19.5 4.6 121 70-210 142-270 (487) 427 cd05175 PI3Kc_IA_alpha Phospho 76.3 4.9 0.00013 19.8 4.3 78 187-265 214-307 (366) 428 pfam07746 LigA Aromatic-ring-o 76.0 2.9 7.5E-05 21.3 3.1 56 226-281 2-62 (88) 429 KOG4236 consensus 75.7 6 0.00015 19.3 5.2 29 184-213 683-715 (888) 430 KOG0669 consensus 75.2 3 7.6E-05 21.2 3.0 28 185-212 144-171 (376) 431 KOG0590 consensus 74.9 1.9 4.7E-05 22.6 1.9 36 184-219 439-474 (601) 432 KOG4717 consensus 74.6 6.1 0.00015 19.2 4.4 28 185-212 138-166 (864) 433 KOG4530 consensus 73.7 6.8 0.00017 18.9 5.1 55 75-132 97-151 (199) 434 cd05165 PI3Kc_I Phosphoinositi 73.2 7 0.00018 18.9 5.0 74 187-265 215-307 (366) 435 cd00891 PI3Kc Phosphoinositide 73.0 7 0.00018 18.8 4.7 76 187-264 206-293 (352) 436 KOG0582 consensus 72.3 7.3 0.00019 18.7 5.8 135 30-212 34-173 (516) 437 pfam09192 Act-Frag_cataly Acti 70.7 3.5 8.8E-05 20.8 2.4 54 22-82 25-87 (274) 438 cd00896 PI3Kc_III Phosphoinosi 70.6 7.9 0.0002 18.5 4.6 77 187-265 205-288 (350) 439 cd05170 PIKKc_SMG1 Suppressor 70.4 2.7 6.9E-05 21.5 1.8 26 186-212 211-238 (307) 440 cd00142 PI3Kc_like Phosphoinos 70.0 2.7 6.8E-05 21.5 1.7 29 186-215 130-160 (219) 441 KOG0591 consensus 69.1 8.6 0.00022 18.3 6.1 29 184-212 147-175 (375) 442 KOG0611 consensus 68.4 7.4 0.00019 18.7 3.7 27 185-211 173-199 (668) 443 cd00892 PIKKc_ATR ATR (Ataxia 67.2 3.6 9.1E-05 20.7 1.9 27 186-213 141-169 (237) 444 cd05171 PIKKc_ATM Ataxia telan 67.2 3.1 7.9E-05 21.2 1.6 25 187-212 184-210 (279) 445 KOG4278 consensus 66.9 8.1 0.00021 18.4 3.7 30 184-213 384-413 (1157) 446 KOG0579 consensus 66.7 9.5 0.00024 18.0 5.0 153 3-214 24-179 (1187) 447 KOG2653 consensus 65.9 2 5.2E-05 22.3 0.4 21 7-27 214-234 (487) 448 cd05163 TRRAP TRansformation/t 65.7 3.3 8.3E-05 21.0 1.4 26 187-213 157-184 (253) 449 cd05172 PIKKc_DNA-PK DNA-depen 65.7 3.8 9.7E-05 20.6 1.8 27 186-213 138-166 (235) 450 cd05168 PI4Kc_III_beta Phospho 65.0 10 0.00026 17.8 4.3 79 187-267 144-232 (293) 451 COG0515 SPS1 Serine/threonine 64.1 3.5 8.9E-05 20.8 1.3 30 184-213 120-150 (384) 452 cd05164 PIKKc Phosphoinositide 63.8 3.9 9.9E-05 20.5 1.5 27 186-213 133-161 (222) 453 KOG0902 consensus 63.6 11 0.00028 17.6 6.8 75 188-266 1656-1743(1803) 454 cd07923 Gallate_dioxygenase_C 63.2 11 0.00028 17.6 4.5 58 222-279 5-67 (94) 455 KOG0200 consensus 62.0 5.6 0.00014 19.5 2.1 29 185-213 438-466 (609) 456 KOG0614 consensus 61.8 4.6 0.00012 20.0 1.6 30 183-212 538-567 (732) 457 pfam00454 PI3_PI4_kinase Phosp 61.6 4.6 0.00012 20.0 1.6 28 186-214 134-163 (233) 458 TIGR00654 PhzF_family phenazin 61.3 12 0.0003 17.3 4.8 115 5-136 32-163 (314) 459 KOG0905 consensus 61.3 12 0.00031 17.3 4.6 71 188-265 1200-1289(1639) 460 KOG1025 consensus 60.3 12 0.00032 17.2 4.9 32 183-214 816-847 (1177) 461 KOG0580 consensus 60.1 7.6 0.00019 18.6 2.5 145 15-216 20-175 (281) 462 cd05174 PI3Kc_IA_delta Phospho 59.7 13 0.00033 17.2 5.4 73 187-265 211-302 (361) 463 TIGR02090 LEU1_arch isopropylm 59.4 8.1 0.00021 18.4 2.5 35 164-198 171-208 (371) 464 KOG0607 consensus 59.1 13 0.00033 17.1 4.0 31 183-213 194-227 (463) 465 smart00146 PI3Kc Phosphoinosit 58.1 5 0.00013 19.8 1.3 27 187-214 104-131 (202) 466 KOG1033 consensus 58.0 2.1 5.3E-05 22.2 -0.7 31 184-214 375-405 (516) 467 KOG0597 consensus 58.0 14 0.00035 17.0 5.9 29 185-213 120-148 (808) 468 KOG4158 consensus 56.5 14 0.00037 16.8 4.5 30 183-213 359-393 (598) 469 KOG0696 consensus 56.1 9.4 0.00024 18.0 2.4 30 183-213 468-498 (683) 470 cd05177 PI3Kc_C2_gamma Phospho 55.6 15 0.00038 16.7 5.7 73 187-266 206-297 (354) 471 pfam08909 DUF1854 Domain of un 53.9 16 0.0004 16.5 4.9 42 10-51 46-90 (133) 472 pfam04767 Pox_F17 DNA-binding 53.6 9.8 0.00025 17.9 2.2 20 33-52 1-21 (98) 473 KOG4721 consensus 53.0 6.7 0.00017 19.0 1.2 28 186-213 233-260 (904) 474 KOG1290 consensus 52.9 9.1 0.00023 18.1 1.9 48 28-76 84-135 (590) 475 KOG0604 consensus 52.6 17 0.00042 16.4 4.0 54 163-223 166-222 (400) 476 cd05176 PI3Kc_C2_alpha Phospho 51.8 10 0.00026 17.8 2.0 72 187-260 205-290 (353) 477 KOG0589 consensus 51.4 17 0.00044 16.3 7.3 131 39-214 21-155 (426) 478 KOG1240 consensus 51.1 11 0.00028 17.5 2.1 18 40-57 41-58 (1431) 479 cd05166 PI3Kc_II Phosphoinosit 50.9 9.3 0.00024 18.0 1.7 77 187-265 205-295 (353) 480 cd05173 PI3Kc_IA_beta Phosphoi 50.5 9.6 0.00024 18.0 1.7 74 187-266 211-303 (362) 481 KOG4645 consensus 47.7 14 0.00035 17.0 2.1 31 183-213 1352-1382(1509) 482 KOG1094 consensus 47.4 11 0.00027 17.7 1.6 29 185-213 657-685 (807) 483 KOG0574 consensus 46.9 10 0.00026 17.8 1.4 13 76-88 154-166 (502) 484 cd00894 PI3Kc_IB_gamma Phospho 46.8 12 0.00029 17.4 1.7 77 187-265 215-306 (365) 485 cd00895 PI3Kc_C2_beta Phosphoi 46.7 12 0.00031 17.3 1.8 73 187-265 206-296 (354) 486 TIGR02144 LysX_arch Lysine bio 46.0 21 0.00053 15.8 3.2 37 71-108 95-134 (289) 487 pfam05445 Pox_ser-thr_kin Poxv 45.6 15 0.00039 16.7 2.1 20 181-200 293-314 (434) 488 COG0397 Uncharacterized conser 44.1 22 0.00057 15.6 9.8 121 70-211 142-275 (488) 489 KOG1095 consensus 43.1 13 0.00033 17.1 1.5 30 184-213 821-850 (1025) 490 TIGR01743 purR_Bsub pur operon 41.2 20 0.00051 15.9 2.1 88 12-137 45-142 (269) 491 KOG0194 consensus 41.1 25 0.00064 15.3 4.5 33 184-216 281-313 (474) 492 KOG4279 consensus 41.0 25 0.00064 15.3 3.4 77 185-261 695-806 (1226) 493 PRK13277 5-formaminoimidazole- 39.9 20 0.00051 15.9 2.0 42 39-87 105-146 (363) 494 KOG0662 consensus 39.7 26 0.00067 15.1 4.3 29 184-212 120-148 (292) 495 COG1693 Repressor of nif and g 39.6 14 0.00037 16.8 1.2 84 4-91 66-149 (325) 496 pfam11080 DUF2622 Protein of u 38.8 27 0.00069 15.0 4.9 71 45-129 6-76 (96) 497 TIGR02944 suf_reg_Xantho FeS a 37.9 13 0.00034 17.0 0.8 48 2-53 32-80 (130) 498 COG1554 ATH1 Trehalose and mal 37.7 28 0.00072 14.9 6.4 34 262-299 461-496 (772) 499 TIGR01990 bPGM beta-phosphoglu 37.2 29 0.00073 14.9 3.9 82 47-129 78-163 (190) 500 KOG0906 consensus 36.6 12 0.00029 17.4 0.4 67 188-255 698-770 (843) No 1 >PRK05231 homoserine kinase; Provisional Probab=100.00 E-value=0 Score=700.54 Aligned_cols=315 Identities=42% Similarity=0.787 Sum_probs=303.9 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 96577089999999998489986053100466812001799943995899982166998899999999999853267755 Q gi|254780795|r 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP 80 (316) |||||+||.+|++.+|++|+||++++++||++|++||||+|+|++|+||||||| +.+.++|||++++|+||+++|+||| T Consensus 1 MaVyT~ls~~el~~~l~~Y~lG~l~~~~gI~~GieNTNY~v~T~~g~yILTifE-r~~~~~lpff~~Lm~~L~~~gipcP 79 (319) T PRK05231 1 MAVYTPVSDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQGEYVLTLFE-RLTAEDLPFFLELMQHLAARGLPVP 79 (319) T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEEEE-CCCHHHCCHHHHHHHHHHHCCCCCC T ss_conf 971114899999999996699975021064666347428999459718999961-2883655299999999987899788 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 51001026778752245155786478870768998999999998643675306875433231124564576675200155 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD 160 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~ 160 (316) .||++++|+.+.+++|||++|++|++|+++..+++++|+++|++||+||+++++|+..|+|.+++.||...+.++.+.++ T Consensus 80 ~Pi~~~~G~~i~~l~gKpa~L~~fL~G~~~~~~~~~~c~~iG~~LA~lH~a~~~f~~~r~n~~~~~~~~~~~~~~~~~~~ 159 (319) T PRK05231 80 APLARRDGELLGTLAGKPAAIVTFLEGKHPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRSLAWWRELAPRLLPFLD 159 (319) T ss_pred CEEECCCCCCHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 36788998755785690489998258988799999999999999999665216798668888986899999999872178 Q ss_pred HHHHH----HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCC Q ss_conf 22788----99999998887652107774440223464225627960487316213568000198999986431168887 Q gi|254780795|r 161 EDLKK----EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTY 236 (316) Q Consensus 161 ~~~~~----~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~ 236 (316) +.... ++......+++.+|++||+|+||||+|+|||||++++++|||||++||.|+++||||||+|+||++.+|.+ T Consensus 160 ~~~~~ll~~~i~~~~~~l~~~~~~~LP~GiIHaDLF~DNvlF~~~~lsGiIDFyfac~d~~~yDLAI~iN~WC~~~~g~~ 239 (319) T PRK05231 160 EDQAALLEDELAAQLAFLASAWPAALPRGVIHADLFRDNVLFEGDRLSGFIDFYFACNDKLLYDVAITLNDWCFELDGAL 239 (319) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCEEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 76799999999999999853151028865320322433433508951689750230461689999999999982788983 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 87889999988764188998999999999999999999999998760885123112687999999999975211785179 Q gi|254780795|r 237 NPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFHKQISSISEYGF 316 (316) Q Consensus 237 d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~~~~~~~~~~~~ 316 (316) |.+++++||+||+++||||++|+++||.|+|+||||||+|||+|++++|+++.|++|||+||.++|+||+++++..+||+ T Consensus 240 ~~~~~~all~gY~~~R~L~~~E~~~lp~llr~AAlRF~ltRL~d~~~~~~~~~v~~KdP~ef~~~L~~~~~~~~~~~~~~ 319 (319) T PRK05231 240 DVTKARALLAAYQSVRPLTAAERAALPVMLRGAALRFWLSRLYDFLLPRAGALVKPKDPLEFERKLRFRQAVVSALPYGL 319 (319) T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 89999999999985489999999999999999999999999999765999756615698999999999860498402489 No 2 >TIGR00938 thrB_alt homoserine kinase; InterPro: IPR005280 Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase. . Probab=100.00 E-value=0 Score=676.42 Aligned_cols=304 Identities=43% Similarity=0.806 Sum_probs=294.8 Q ss_pred CCCCCCCCHHHHHHHHHHC-CCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9657708999999999848-998605310046681200179994399589998216699889999999999985326775 Q gi|254780795|r 1 MAVYTHPPQKEIQSFVQEY-AIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPC 79 (316) Q Consensus 1 MaVyt~ls~~el~~il~~y-~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipv 79 (316) |||||.||.+|++.+|+-| |+|++.+++||++||+||||+|+|++|+||||+||+|.+.++||||++|+.||+.+|+|| T Consensus 1 MaVYT~vsD~e~~~FL~GYPDlG~ll~lkGIA~Gv~NSNYl~tT~~GrYiLTlyE~~~~~EeLPfFL~L~~hLA~~g~p~ 80 (312) T TIGR00938 1 MAVYTSVSDEEMEAFLEGYPDLGELLSLKGIAEGVENSNYLLTTDKGRYILTLYEKRVKAEELPFFLELLTHLAERGLPV 80 (312) T ss_pred CCEEECCCHHHHHHHHCCCCCCCCHHHCCCCCCCCCEECCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 93440241899999853377555310001322362100315660587368876520168657710889999998638998 Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHH-- Q ss_conf 55100102677875224515578647887076899899999999864367530--68754332311245645766752-- Q gi|254780795|r 80 PIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT--KNFHLYRKNTLSPLNLKFLWAKC-- 155 (316) Q Consensus 80 P~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~--~~f~~~r~~~~~~~~~~~~~~~~-- 155 (316) |+|+++++|+.+.++.|||+||++|++|.++..|+..+|+.+|+.+|+||.+. .+|+..+.|.+....|.....+. T Consensus 81 a~p~~~~~G~~~~~L~GkPAaLv~fL~G~s~~~P~~~~c~~~G~~lA~~hla~sl~~F~~~~~N~L~~~~W~~~~~~~G~ 160 (312) T TIGR00938 81 AKPVKSRDGRALSSLAGKPAALVEFLKGLSVAKPTAEHCREVGEVLAWMHLAGSLADFPEERKNDLRLEAWRILASKKGF 160 (312) T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCH T ss_conf 87500025430222067715666312688778880775367647887898775541563102678552231599873324 Q ss_pred --HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEECCCCCCCCHHHCCHHHHHHHHHHCC Q ss_conf --00155227889999999888765210777444022346422562796-048731621356800019899998643116 Q gi|254780795|r 156 --FDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNK-IMGLIDFYFSCNDFLMYDLSICINAWCFDE 232 (316) Q Consensus 156 --~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~-i~giIDF~~~~~~~~i~DLAi~i~~~c~~~ 232 (316) .+.++++..+.|.++++.+...+|++||+|+||+|||+|||||++|+ +.|+||||+||.+-++||||||+|+||++. T Consensus 161 ~~~~~L~~~~~~~~~~~L~~l~~~~~~~LP~gvIHADlF~DNVL~~g~~k~~g~IDFYfAC~~~~~YD~Ait~n~Wc~~a 240 (312) T TIGR00938 161 KAAPQLEEELSALLDKELDYLKKFWPRDLPRGVIHADLFPDNVLFDGDKKVAGVIDFYFACDDAYAYDLAITVNAWCFEA 240 (312) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEECCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 54332271038899999999974366557862364224777456507874455651131335025789999996898621 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH Q ss_conf 888787889999988764188998999999999999999999999998760885123112687999999999 Q gi|254780795|r 233 NNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRF 304 (316) Q Consensus 233 ~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~ 304 (316) ++.+|....+|||+||+++||||++|+++||+|+|+||||||+|||.||+++|.|++|.+|||.+|.++|++ T Consensus 241 d~~l~~~~~kAll~GY~~~rpLs~eEkaafp~l~R~AA~RF~ltRl~D~~~t~Ag~Lv~~KDP~~F~~~L~~ 312 (312) T TIGR00938 241 DDKLDAAAAKALLDGYERVRPLSEEEKAAFPVLLRGAAMRFLLTRLLDWVFTPAGALVVPKDPREFERKLKV 312 (312) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 131479999998731211478888789899999999999999999985478778863345880899987259 No 3 >cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. Probab=100.00 E-value=0 Score=632.80 Aligned_cols=296 Identities=39% Similarity=0.742 Sum_probs=288.7 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH Q ss_conf 99999999848998605310046681200179994399589998216699889999999999985326775551001026 Q gi|254780795|r 9 QKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDG 88 (316) Q Consensus 9 ~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G 88 (316) ++||+.+|++|+||++++++||++|++||||+|+|++|+|||||||+ .+.+++||++++|+||+++|+|||.||++++| T Consensus 1 ~~el~~~l~~Y~lG~l~~~~gI~~GieNtNy~l~T~~g~yILtifE~-~~~~dlpff~~Lm~~L~~~g~p~P~pi~~~~G 79 (296) T cd05153 1 QEELASFLADYDLGELLSFEGISAGIENTNYFVTTDSGRYVLTLFEK-VSAEELPFFLALLDHLAERGLPVPRPIADRDG 79 (296) T ss_pred CHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEECCCC T ss_conf 96899999857998750202725564564589995598389997268-99466539999999998679869978448999 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 77875224515578647887076899899999999864367530687543323112456457667520015522788999 Q gi|254780795|r 89 KLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEID 168 (316) Q Consensus 89 ~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (316) +.+..++|||++|++|++|+++..+++.+|+++|++||+||+++++|+..++|.++..||........+.+.++....+. T Consensus 80 ~~~~~l~gKpa~l~~fL~G~~~~~~~~~~c~~iG~~LAklH~~~~~f~~~r~n~~~~~w~~~~~~~~~~~~~~~~~~~l~ 159 (296) T cd05153 80 EYLSELAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLA 159 (296) T ss_pred CCHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 87335269459999856888989999999999999999987510679876888876668999998753006988999999 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 99998887652107774440223464225627960487316213568000198999986431168887878899999887 Q gi|254780795|r 169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGY 248 (316) Q Consensus 169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY 248 (316) +++..++..++++||+|+||||+|+|||||++++|+|||||++||+|+++||||||+|+||++.+|.+|++++++||+|| T Consensus 160 ~el~~l~~~~~~~LP~GiIHgDLF~DNVlF~~d~vsGiIDFy~ac~d~~~yDLAI~iN~WC~~~~~~~~~~~~~all~gY 239 (296) T cd05153 160 DELARQDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFACTDAFLYDLAITLNDWCFDEDGALDPERAQALLAGY 239 (296) T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 99999986180008865532433423344506874023134541431899999999999991567885899999999999 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHH Q ss_conf 641889989999999999999999999999987608851231126879999999999 Q gi|254780795|r 249 NKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFH 305 (316) Q Consensus 249 ~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~ 305 (316) +++||||++|+++||.++|+||||||+|||+|++++++++++++|||+||.++|++| T Consensus 240 ~~~R~L~~~E~~~l~~~~r~AAlRF~ltRl~d~~~~~~~~~~~~KdP~e~~~~l~~~ 296 (296) T cd05153 240 QAVRPLTEAERAALPIMLRGAALRFWLSRLYDFHFPPAGELVTIKDPLEYRRRLRFR 296 (296) T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 863999999999999999999999999999996659996316665989999998459 No 4 >COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only] Probab=100.00 E-value=0 Score=439.61 Aligned_cols=313 Identities=33% Similarity=0.516 Sum_probs=285.8 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 96577089999999998489986053100466812001799943995899982166998899999999999853267755 Q gi|254780795|r 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP 80 (316) |+|||.++..++...+..|++|-..++.++.+ .+|+||+|.|++|+||||+|+...+..++++|+.+|+||+++|+||| T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~l~s-~eN~~f~~~~~~g~~iLki~~~~~~~~~i~~el~~l~~La~~~i~v~ 83 (331) T COG2334 5 MAVFTPLTSDEAAAALEAYHYGLDGSLRGLNS-EENSNFRVQTEDGRYILKIYRPGWTRAEIPFELALLQHLAERGIPVP 83 (331) T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 22456758099999998457487544232333-46751788717997699982688887777999999999997599887 Q ss_pred CCCCCCHHHHHHHHCC--CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHH Q ss_conf 5100102677875224--515578647887076-899899999999864367530687543323112456457---6675 Q gi|254780795|r 81 IPIPRNDGKLYGFLCK--KPANIFSFIKGSPLN-HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF---LWAK 154 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~--k~~~L~~~i~G~~~~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~---~~~~ 154 (316) .|++++||+.+..+.+ ++++|++|++|++.. .+|.++|+.+|++||+||.++++|+..+++......|.. .... T Consensus 84 ~Pl~~~dG~~l~~~~~~~r~a~lf~~l~G~~~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~ 163 (331) T COG2334 84 APLPSLDGELLEALSGGPRPAALFEYLPGRPLERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALL 163 (331) T ss_pred CCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 77616785611101478657999886699676778878999999999999999747797658873343220111115566 Q ss_pred HHHC-CCHHHHHHHHHHHHHHHHHHHHCCCCC---EEECCCCCCCEEECCCC-CEEEECCCCCCCCHHHCCHHHHHHHHH Q ss_conf 2001-552278899999998887652107774---44022346422562796-048731621356800019899998643 Q gi|254780795|r 155 CFDK-VDEDLKKEIDHEFCFLKESWPKNLPTG---IIHADLFPDNVLFYNNK-IMGLIDFYFSCNDFLMYDLSICINAWC 229 (316) Q Consensus 155 ~~~~-~~~~~~~~l~~~l~~~~~~~~~~Lp~g---~IHgDl~~~NiL~~~~~-i~giIDF~~~~~~~~i~DLAi~i~~~c 229 (316) .... .+......+...++.+.+.+++.+|.+ +||||+|++||+|+++. ++|+|||||||++|++|||||++|+| T Consensus 164 ~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~~~~i~DlAi~l~~~- 242 (331) T COG2334 164 RLDLVEPEDLRAALLAALDRLLARLPAHLPALGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGYGWFIYDLAIALNAW- 242 (331) T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCCCCCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHH- T ss_conf 5314787767799999999999745332676555457667760347776898700078761124435999999999876- Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 11688878788999998876418899899999999999999999999999876088512311268799999999997521 Q gi|254780795|r 230 FDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTRFHKQIS 309 (316) Q Consensus 230 ~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~~~~~~~~kdp~~~~~~~~~~~~~~ 309 (316) ..+...+..+..+|++||+++|||+++|+++||.++|++|+|||.+|++++..+|.+.....++|..+.+.++++++.. T Consensus 243 -~~d~~~~~~~~~a~l~GY~~v~pl~~~El~~Lp~l~r~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~ 321 (331) T COG2334 243 -NGDEADPRAAIAAFLEGYEEVRPLTAAELELLPDLRRLRALRLWAWRLIRWLLPPAGRLWLKLDPAWLRRLLEFLEQIK 321 (331) T ss_pred -HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHH T ss_conf -2578764899999999865338899999987799999999999998877603687665102057205999999997400 Q ss_pred HHHHCCC Q ss_conf 1785179 Q gi|254780795|r 310 SISEYGF 316 (316) Q Consensus 310 ~~~~~~~ 316 (316) +..++.+ T Consensus 322 ~~~~~~~ 328 (331) T COG2334 322 ALDEPPL 328 (331) T ss_pred CCCCCCC T ss_conf 3354444 No 5 >PRK06149 hypothetical protein; Provisional Probab=100.00 E-value=0 Score=321.20 Aligned_cols=302 Identities=19% Similarity=0.282 Sum_probs=240.5 Q ss_pred CCCHHHHHHHHH-HCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCCCCCC Q ss_conf 089999999998-4899860531004668120017999439958999821669988999999999998532--6775551 Q gi|254780795|r 6 HPPQKEIQSFVQ-EYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN--KLPCPIP 82 (316) Q Consensus 6 ~ls~~el~~il~-~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~--gipvP~p 82 (316) .+|.+|.+.+++ +|||. -+++++ .|-...||+|++++|+|||||.+...+...++++..+|.||+++ ++|||++ T Consensus 16 ~~S~~eA~~ll~~~yGi~--g~l~~L-~sErD~NF~v~~~~g~yVLKI~n~~e~~~~ld~Q~~aL~HLa~~~~~l~vP~v 92 (972) T PRK06149 16 DVSEAQAQEILAQHYGLS--GTLASL-GSQQDRNFRVDTDRGRFVLKICHGAYTTVELEAQHAALRHLAEAEPALRVPVV 92 (972) T ss_pred CCCHHHHHHHHHHHCCCE--EEEEEC-CCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE T ss_conf 999999999999867987--998517-86015125798189878999627889878999999999999836999989977 Q ss_pred CCCCHHHHHHHHC--C--CCEEEEECCCCCCC---CCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHH Q ss_conf 0010267787522--4--51557864788707---689989999999986436753068754---332311245645766 Q gi|254780795|r 83 IPRNDGKLYGFLC--K--KPANIFSFIKGSPL---NHISDIHCEEIGSMLASMHQKTKNFHL---YRKNTLSPLNLKFLW 152 (316) Q Consensus 83 i~~~~G~~~~~~~--~--k~~~L~~~i~G~~~---~~~~~~~~~~lG~~La~lH~~~~~f~~---~r~~~~~~~~~~~~~ 152 (316) +++++|+.+..++ | ..++|++|+||+.. ...++...+++|+++|++.+++++|.. .|...|++....... T Consensus 93 i~t~~G~~~~~~~~~g~~~~vRLlsyl~G~~l~~~~~~s~~l~~~LG~~lg~l~~AL~~F~HP~~~R~~~WDl~~a~~~~ 172 (972) T PRK06149 93 IPANDGEELLTLDVRGQGLHVRLLEYLEGQPLTRLGHLAPASVAGLGALCARVDRALADFDHPGLDRTLQWDLRHAGAVI 172 (972) T ss_pred EECCCCCEEEEEECCCCEEEEEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 53699985799964897799999980098743448889989999999999999998657988776787560701118999 Q ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHH-H--HHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHHHCCHHH Q ss_conf 7520015-522788999999988876-5--21077744402234642256279-----6048731621356800019899 Q gi|254780795|r 153 AKCFDKV-DEDLKKEIDHEFCFLKES-W--PKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFLMYDLSI 223 (316) Q Consensus 153 ~~~~~~~-~~~~~~~l~~~l~~~~~~-~--~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~i~DLAi 223 (316) ..+...+ +...++.+...+..+.+. . .+.||+++||||++.+|||++++ +++|||||+|+|+.|++.|||| T Consensus 173 ~~ll~~I~D~~~R~~i~~~l~~f~~~v~P~l~~Lr~qvIHND~ND~NIlV~~d~~~~~~vsGIIDFGD~~~~~~i~dlAi 252 (972) T PRK06149 173 DHLLPHVADPAQRDRIAEATRDAVRRLQPLADALPLQAVHLDITDDNVVWSRDAGGQWQPDGVIDFGDLTRTWRVADLAV 252 (972) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHHHHHCCHHHHHHH T ss_conf 99988639999999999999999997415455386232547886455785068888730455765355451124569999 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHCCCCCHHHHHH Q ss_conf 99864311688878788999998876418899899999999999999999999999---876088512311268799999 Q gi|254780795|r 224 CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLY---DSQNMPCNALTITKDPMEYIL 300 (316) Q Consensus 224 ~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~---d~~~~~~~~~~~~kdp~~~~~ 300 (316) ||.|...+.++ ++..+.++++||++++||+++|+++|+.|+ ++|.-+|..- .....|+|.|+++....+|.. T Consensus 253 a~ay~l~~~~~--~p~~~~~~v~gyh~~~pL~~~Ei~~l~~li---~~Rl~vsv~~s~~~~~~~Pdn~Yl~is~~~aw~~ 327 (972) T PRK06149 253 TCASLLHHAGG--DPFSILPAVRAYHAINPLSDAELKALWPLV---VARAAVLVLSSEQQASVDPGNAYVRDNLDHEWEI 327 (972) T ss_pred HHHHHHHCCCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH T ss_conf 99999835799--999999999998516999999999999999---9999999999999986189996523124448899 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999997521178517 Q gi|254780795|r 301 KTRFHKQISSISEYG 315 (316) Q Consensus 301 ~~~~~~~~~~~~~~~ 315 (316) +.+++.....+..+. T Consensus 328 l~~~~~~~~~l~~a~ 342 (972) T PRK06149 328 FDTATSVPFDLMEAA 342 (972) T ss_pred HHHHHHCCHHHHHHH T ss_conf 999874799999999 No 6 >PRK06148 hypothetical protein; Provisional Probab=100.00 E-value=0 Score=316.94 Aligned_cols=300 Identities=19% Similarity=0.264 Sum_probs=240.5 Q ss_pred CCCHHHHHHHHH-HCCC-CCEEEEEECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCCCC Q ss_conf 089999999998-4899-8605310046681200179994399-58999821669988999999999998532--67755 Q gi|254780795|r 6 HPPQKEIQSFVQ-EYAI-GQLNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKDLPVFIELLHYISRN--KLPCP 80 (316) Q Consensus 6 ~ls~~el~~il~-~y~l-g~~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~--gipvP 80 (316) .+|.+|.+++|+ +||| |++ +++ .|-...||+|++++| +|||||++...+...++++..+|+||+++ ++||| T Consensus 10 ~~s~~ea~~ll~~~yGi~g~l---~~L-~sE~D~NF~v~~~~g~~yVLKI~n~~e~~~~le~Q~~aL~hL~~~~~~l~vP 85 (1015) T PRK06148 10 EFTTKDAEALLAQHFGVSASL---TPL-DGERDLNFRLKTGNGAGYILKIVNASEPRVESEFQTALLDHLAATAPALPVP 85 (1015) T ss_pred CCCHHHHHHHHHHHCCCEEEE---EEC-CCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 999999999999867986999---767-8635521589718998799996588798779999999999998459999888 Q ss_pred CCCCCCHHHHHHHHC---CC--CEEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHH Q ss_conf 510010267787522---45--15578647887076--89989999999986436753068754---3323112456457 Q gi|254780795|r 81 IPIPRNDGKLYGFLC---KK--PANIFSFIKGSPLN--HISDIHCEEIGSMLASMHQKTKNFHL---YRKNTLSPLNLKF 150 (316) Q Consensus 81 ~pi~~~~G~~~~~~~---~k--~~~L~~~i~G~~~~--~~~~~~~~~lG~~La~lH~~~~~f~~---~r~~~~~~~~~~~ 150 (316) ++++|.+|+.+..+. |+ .++|++|+||+... ..++...+++|+++|++.+++++|.. .|...|++..... T Consensus 86 ~vi~t~~G~~~~~~~~~~g~~~~vRLlt~l~G~~l~~~~~s~~l~~~LG~~lg~l~~AL~~F~HP~~~R~~~WDl~~a~~ 165 (1015) T PRK06148 86 HLKPSLSGASLASAEDPDGKPHALRLVSWLPGTPLAEAKRTKALLKNLGRALGELDRALQGFMHPGALRDFDWDLRHAGR 165 (1015) T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH T ss_conf 25525999856899868998899998982288771348999899999999999999986489886667877738566499 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH-H--HHCCCCCEEECCCCCCCEEECC---CCCEEEECCCCCCCCHHHCCHHHH Q ss_conf 667520015522788999999988876-5--2107774440223464225627---960487316213568000198999 Q gi|254780795|r 151 LWAKCFDKVDEDLKKEIDHEFCFLKES-W--PKNLPTGIIHADLFPDNVLFYN---NKIMGLIDFYFSCNDFLMYDLSIC 224 (316) Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~-~--~~~Lp~g~IHgDl~~~NiL~~~---~~i~giIDF~~~~~~~~i~DLAi~ 224 (316) ....+....+++.++.+.+.+..+++. . .+.||+++||||++.+||++++ ++|+|||||+|+|++|++.||||| T Consensus 166 ~~~~L~~i~d~~~r~ii~~~~~~f~~~v~P~l~~L~~qvIHnD~Nd~NIlV~~~~~~~v~GiIDFGD~~~~~~i~dlAi~ 245 (1015) T PRK06148 166 ARDRLHCIDDPERRALIERFLARFERTVAPRLPALRAQVIHNDANDWNVLVDADDGERISGLIDFGDAVHTPRIAEVAIA 245 (1015) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHH T ss_conf 99998754999999999999999999740545538612177888755477658888760489974200123234499999 Q ss_pred HHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHCCCCCHHHHHH Q ss_conf 9864311688878788-999998876418899899999999999999999999999---876088512311268799999 Q gi|254780795|r 225 INAWCFDENNTYNPSR-GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLY---DSQNMPCNALTITKDPMEYIL 300 (316) Q Consensus 225 i~~~c~~~~~~~d~~~-~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~---d~~~~~~~~~~~~kdp~~~~~ 300 (316) +.|..++.. |+.. ..++++||++++||+++|+++|+.|+ ++|.-+|..- .....|+|.|+++....+|.. T Consensus 246 ~ay~~l~~~---dp~~~~~~~v~gyh~~~pL~~~Ei~~l~~li---~~Rl~vsv~~s~~~~~~~Pdn~Y~~is~~~aw~l 319 (1015) T PRK06148 246 AAYAILDMP---DPIGAAAALAAGYHAKYPLQAQELDLLFDLI---AMRLVVSVTNSASRREQTPDNPYLAISEAPAWRL 319 (1015) T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH T ss_conf 999972589---8789999999998745899999999999999---9999999999999987389996235303438999 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999997521178517 Q gi|254780795|r 301 KTRFHKQISSISEYG 315 (316) Q Consensus 301 ~~~~~~~~~~~~~~~ 315 (316) +-++......+..+. T Consensus 320 L~~~~~i~~~~~~a~ 334 (1015) T PRK06148 320 LERLDALNPRLATAI 334 (1015) T ss_pred HHHHHHCCHHHHHHH T ss_conf 999873699999999 No 7 >TIGR02906 spore_CotS spore coat protein, CotS family; InterPro: IPR014255 Members of this entry include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologues that are more closely related to these two than to the spore coat proteins YutH (IPR014254 from INTERPRO) and YsxE (IPR014253 from INTERPRO). The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.. Probab=100.00 E-value=1.8e-31 Score=223.34 Aligned_cols=256 Identities=19% Similarity=0.236 Sum_probs=200.2 Q ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-CCCH Q ss_conf 179994399589998216699889999999999985326-77555100102677875224515578647887076-8998 Q gi|254780795|r 38 NFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLN-HISD 115 (316) Q Consensus 38 ny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~-~~~~ 115 (316) .|.|.|++|+++||... .+.+.+-|-+.+++||.++| .+||..++|++|+.+..++|..++|++||+|+.++ ..|+ T Consensus 12 v~~~~T~~g~~cLK~i~--~~~~~~lFi~~A~ehL~~~gF~~i~~i~~tk~g~~y~~~n~~ly~l~ew~eGrec~P~~n~ 89 (321) T TIGR02906 12 VYKVETDSGEKCLKKIN--YSPERLLFILGAQEHLKKNGFNNIPKILKTKDGELYVKLNGDLYVLTEWIEGRECDPFNNP 89 (321) T ss_pred EEEEECCCCCEEEEEEC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCCH T ss_conf 78898489752455511--7864002579999999981776564233588887446547818998433026469888898 Q ss_pred HHHHHHHHHHHHHHHHCCCC-CCCCC--CCCC--HHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH-- Q ss_conf 99999999864367530687-54332--3112--45645766752001----------------55227889999999-- Q gi|254780795|r 116 IHCEEIGSMLASMHQKTKNF-HLYRK--NTLS--PLNLKFLWAKCFDK----------------VDEDLKKEIDHEFC-- 172 (316) Q Consensus 116 ~~~~~lG~~La~lH~~~~~f-~~~r~--~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~l~~~l~-- 172 (316) .++..+.+.||.||.++.|| .+++. .... +..|...+.+..+. .+......++..++ T Consensus 90 ~dl~~~~~~La~~H~aS~Gy~~~p~~~~~~~~~~Lgkw~~~f~~~~~~l~~~k~~~~~~~~~~~Fd~~yl~~~D~~l~~~ 169 (321) T TIGR02906 90 IDLKKAAKALALLHEASKGYRVPPDGSKIRSKNELGKWPKQFEKRLEELEKFKKIAKEKKYKDEFDKLYLKEVDYFLERA 169 (321) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999998556506675107776641034430201679999999999999998621225700368998878999999 Q ss_pred -----HHHHHHHHCC------CCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHH Q ss_conf -----8887652107------774440223464225627-9604873162135680001989999864311688878788 Q gi|254780795|r 173 -----FLKESWPKNL------PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR 240 (316) Q Consensus 173 -----~~~~~~~~~L------p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~ 240 (316) .+....+.+| .+|+||.|+-.+|+|+.+ +++. |||||.|..|.++.||+-.|+-..+.+.+.||.+. T Consensus 170 ~~~~~~l~~S~Y~~l~~~~~~~~~fCH~Dy~~~Nil~~~~~~~~-~IDfD~~~~Dl~~~Dl~~~i~k~~~~k~~~WD~~~ 248 (321) T TIGR02906 170 KKALELLNKSKYYDLCKEEKKKRGFCHQDYAYHNILLKDNNEVY-VIDFDYCTIDLRVRDLRKLIIKLMFKKNGKWDLEK 248 (321) T ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCEECHHHHCCCCCCCCCEE-EEECCEEEECCCHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 99999863277226888753235630320144251223798756-87516056655365599997667753022146789 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHCCCCCHHHHHHHHH Q ss_conf 999998876418899899999999999999999999999876088-512311268799999999 Q gi|254780795|r 241 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMP-CNALTITKDPMEYILKTR 303 (316) Q Consensus 241 ~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~-~~~~~~~kdp~~~~~~~~ 303 (316) +..+|++|+++.||+.+|.+.|..+|.. =-+||-... +++..+ ... .+..|..+|. T Consensus 249 ~~~iI~~Y~~~~pL~~~e~e~~~i~l~F-P~~Fw~~~~-~yY~~~~k~w-----~~e~f~~~l~ 305 (321) T TIGR02906 249 AKEIIEAYSSINPLSKEEYEVLYIDLAF-PHKFWKIGK-QYYYKRDKSW-----SEEKFLKKLE 305 (321) T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHC-HHHHHHHHH-HHHHCCCCCC-----CHHHHHHHHH T ss_conf 9999861100368887569999999846-799999999-8640256665-----4448999999 No 8 >pfam01636 APH Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881. Probab=99.97 E-value=1.3e-30 Score=217.83 Aligned_cols=216 Identities=20% Similarity=0.268 Sum_probs=155.9 Q ss_pred EEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf 10046681200179994399589998216699889999999999985326775551001026778752245155786478 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK 106 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~ 106 (316) ++++++|.+|+||++.+++++||||++++......+..|..++++|++.|+|||+|+....+.. ..+.++.+++|++ T Consensus 2 ~~~~~~G~~n~~~~~~~~~~~~vlr~~~~~~~~~~~~~e~~~l~~L~~~~~~vP~~~~~~~~~~---~~~~~~~~~~~i~ 78 (239) T pfam01636 2 LRPLSGGASNRTYLVGTGDGRYVLKLAPPAEAAEELRRELALLRHLAAAGIPVPRVLAGGTDGG---GLGLPFLLMEGLP 78 (239) T ss_pred CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC---CCCCCEEEEEEEC T ss_conf 6766897553549999499318999899886755578999999998733999982533366754---4687679998646 Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH Q ss_conf 87076899-------8999999998643675306875-43323112456457667520----015522788999999988 Q gi|254780795|r 107 GSPLNHIS-------DIHCEEIGSMLASMHQKTKNFH-LYRKNTLSPLNLKFLWAKCF----DKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 107 G~~~~~~~-------~~~~~~lG~~La~lH~~~~~f~-~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~ 174 (316) |+...... ...+.++|+.|++||....... ...........+........ ...............+.+ T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239) T pfam01636 79 GEDLTRDDLLDLAERGALLEALARLLARLHSVPPEALPLARRLARRLKLLRQLAAALARLVAAELLDSLAELWERLLAAL 158 (239) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 71346776313589999999999999999659975578432231327899999999987522223443899999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 8765210777444022346422562-796048731621356800019899998643116888787889999988764 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNK 250 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~ 250 (316) ....+ ..|.++||||++++|+|++ +++++||||||+||+++++||||.+++.||.. +..+....++.+|.. T Consensus 159 ~~~~~-~~~~~l~HgD~~~~Nil~~~~~~v~giID~e~a~~g~~~~Dla~~l~~~~~~----~~~~~~~~~~~~~~~ 230 (239) T pfam01636 159 LALLP-ALPPVLVHGDLHPGNLLVDPGGRVSGVIDFEDAGLGDPAYDLASLLRSLGEE----LGAELLAAYLAAYGA 230 (239) T ss_pred HHCCC-CCCCEEEECCCCCCEEEECCCCCEEEEEECHHCCCCCHHHHHHHHHHHCCCC----CCHHHHHHHHHHHCC T ss_conf 85398-6895588478998818985999589998103237589999999999876668----999999999997689 No 9 >PRK11768 serine/threonine protein kinase; Provisional Probab=99.97 E-value=1.6e-28 Score=204.17 Aligned_cols=296 Identities=15% Similarity=0.220 Sum_probs=208.0 Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCC-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 57708999999999848998605310046681200179994399-589998216-6998899999999999853267755 Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKG-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP 80 (316) -|..||++-+-.-+..-|+-.--.+-++ .-+||+.|.|..+++ +||.|.|+. |-+.++|..|+..+..|++.+|||. T Consensus 7 ~f~~LtPd~ilDAves~G~~~d~rllaL-NSYENRVYQvg~Ed~~~~VaKFYRP~RWS~~QIlEEH~F~~eL~~~EIPVV 85 (326) T PRK11768 7 PFQTLTPDLILDALESVGLRPDGRLLAL-NSYENRVYQFGDEDGRRVVAKFYRPERWSDAQILEEHQFALELAEAEIPVV 85 (326) T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEEC-CCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 8343897999999998387777776422-562422168642489847998518887888999999999999997699813 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHH--H Q ss_conf 51001026778752245155786478870768998999999998643675306875433231124564576-67520--0 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFL-WAKCF--D 157 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~-~~~~~--~ 157 (316) .|+.. +|+++++.+|-.++|++...|+.++..+.++++.+|+.||++|.+++.-+...++.+++...... ...+. . T Consensus 86 aPl~~-~G~TL~~~~Gf~fAlfpr~gGrapEldn~d~L~~lGr~lgRiH~vG~~~~f~hRp~l~~~~~~~~~~~~L~~~~ 164 (326) T PRK11768 86 APLAF-NGETLHEHQGFRFALFPRRGGRAPELDNLDQLEWVGRFLGRIHQVGATRPFEHRPTLDLQEYGHEPRQWLLDSD 164 (326) T ss_pred CCEEE-CCCCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 87523-87201000898999851436879898987999999999999998601478854766788888888999998669 Q ss_pred CCCHHHH----HHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCC Q ss_conf 1552278----8999999988876521-0777444022346422562796048731621356800019899998643116 Q gi|254780795|r 158 KVDEDLK----KEIDHEFCFLKESWPK-NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDE 232 (316) Q Consensus 158 ~~~~~~~----~~l~~~l~~~~~~~~~-~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~ 232 (316) .+..++. +.....+..+...+.. +.+.--+|||+|++||||.++... ++|||||..||.+.|| |.+-. T Consensus 165 ~iP~~l~~~y~~~~~~ll~~v~~~~~~~~~~~iRlHGDCH~GNILwrdd~p~-fVDfDD~r~GPAIQDL------WMlLs 237 (326) T PRK11768 165 LIPSSLRPAYLSAADQLLAAVEAHWARAPFRLLRLHGDCHPGNILWTDDGPH-FVDLDDARMGPAVQDL------WMLLS 237 (326) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCE-EEECCCCCCCCHHHHH------HHHCC T ss_conf 8898999999999999999999985218852244106767554113289864-8744003456178888------87537 Q ss_pred CCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHCCCHHHCCCCCHHHH-HHHHHH Q ss_conf 888787-88999998876418899899999999999999999-----9999998-760885123112687999-999999 Q gi|254780795|r 233 NNTYNP-SRGFSILNGYNKVRKISENELQSLPTLLRGAALRF-----FLTRLYD-SQNMPCNALTITKDPMEY-ILKTRF 304 (316) Q Consensus 233 ~~~~d~-~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf-----~lsrl~d-~~~~~~~~~~~~kdp~~~-~~~~~~ 304 (316) ...-+. .+...+++||+..++....|+..+..|- +||. ||.|-|+ .-+ |.+ .---..+.-| ..++.+ T Consensus 238 G~r~~~~~QL~~lleGYeeF~~Fd~reL~LIEpLR---tlRmihy~AWlarRW~DPAF-p~a-FPWF~t~~YW~~~il~L 312 (326) T PRK11768 238 GDRAEQLMQLETLLEGYEEFCEFDTRELALIEPLR---ALRLIHYSAWLARRWDDPAF-PRA-FPWFGTEDYWEQQILEL 312 (326) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCC-CCC-CCCCCCCHHHHHHHHHH T ss_conf 98279999999999999988369999998889999---99999999999875358653-222-88778614799999999 Q ss_pred HHHHHHHH Q ss_conf 97521178 Q gi|254780795|r 305 HKQISSIS 312 (316) Q Consensus 305 ~~~~~~~~ 312 (316) +++....+ T Consensus 313 rEQ~~~l~ 320 (326) T PRK11768 313 REQLAALQ 320 (326) T ss_pred HHHHHHHC T ss_conf 99999743 No 10 >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain Probab=99.94 E-value=2.4e-26 Score=190.14 Aligned_cols=200 Identities=17% Similarity=0.281 Sum_probs=137.1 Q ss_pred EEEECCCCCEEEEEEEEECCC-CEEEEEECC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 310046681200179994399-589998216---6998899999999999853267755510010267787522451557 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSKG-TFILTIYEK---RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~---~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +++.+++|..|+||+|+++++ +||||+.-. .....++..|..+|+.|++.|+|||+|+..-.+. ..-|.+|.| T Consensus 2 ~~~~l~gG~sn~t~~v~~~~~~~~VlR~~p~~~~~~~~~~~~rE~~vl~~L~~~~vPvP~v~~~~~~~---~~~G~pf~v 78 (223) T cd05154 2 EVRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDP---SVLGTPFYV 78 (223) T ss_pred EEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC---CCCCCCEEE T ss_conf 25876997655569999799968999718988888663037999999998656699976189982688---747875699 Q ss_pred EECCCCCCCCC------CCHH----HHHHHHHHHHHHHHHC-CCCCC--CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 86478870768------9989----9999999864367530-68754--3323112456457667520015522788999 Q gi|254780795|r 102 FSFIKGSPLNH------ISDI----HCEEIGSMLASMHQKT-KNFHL--YRKNTLSPLNLKFLWAKCFDKVDEDLKKEID 168 (316) Q Consensus 102 ~~~i~G~~~~~------~~~~----~~~~lG~~La~lH~~~-~~f~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (316) |+|++|+.... .+++ .+.++|+.||+||... ..+.. .....-........+.+............+. T Consensus 79 m~~i~G~~~~~~~~~~~~~~~~r~~l~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (223) T cd05154 79 MERVDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAME 158 (223) T ss_pred EEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 97326552487666667999999999999999999984689767685325789857999999999999874267873799 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHH Q ss_conf 99998887652107774440223464225627--9604873162135680001989999864 Q gi|254780795|r 169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAW 228 (316) Q Consensus 169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~ 228 (316) ..+.++.++.|..-|-.+||||++++|+||++ ++|+||||||+|..|...+|||..+..| T Consensus 159 ~~~~~L~~~~p~~~~~~L~HgD~~~~Nilv~~~~~~i~gVlDWE~a~~GdP~~Dla~~l~~~ 220 (223) T cd05154 159 RLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLADLGWLLMYW 220 (223) T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHC T ss_conf 99999885577768850562788887089938999489998231256288499999998662 No 11 >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves Probab=99.94 E-value=1.2e-25 Score=185.55 Aligned_cols=147 Identities=24% Similarity=0.421 Sum_probs=124.2 Q ss_pred EEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 31004668120017999439958999821669988999999999998532677555100102677875224515578647 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316) +++++.+|..|.+|+|++++++||||+........+...|..++++|+++++|||+|+....+ .+..+.+++|+ T Consensus 2 ~i~~l~~G~~N~~y~~~~~~~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~~~P~~~~~~~~------~~~~~~i~~~i 75 (155) T cd05120 2 SIKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGES------DGWSYLLMEWI 75 (155) T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC------CCCEEEEEEEE T ss_conf 721879987127699998996799997999855655999999999997569897879999626------99449999721 Q ss_pred CCCCCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 887076899----8999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 106 KGSPLNHIS----DIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 106 ~G~~~~~~~----~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) +|+++...+ +..++++|+.|++||+... T Consensus 76 ~G~~l~~~~~~~~~~~~~~l~~~l~~lh~~~~------------------------------------------------ 107 (155) T cd05120 76 EGETLDEVSEEEKEDIAEQLAELLAKLHQLPL------------------------------------------------ 107 (155) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC------------------------------------------------ T ss_conf 58633447988999999999999999864588------------------------------------------------ Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHH Q ss_conf 77744402234642256279604873162135680001989999864 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAW 228 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~ 228 (316) .++||||++++|+|++++++.+|||||+|+++++.||||.++..+ T Consensus 108 --~~l~H~Dl~~~Nil~~~~~~~~lIDwe~a~~~d~~~Dla~~~~~~ 152 (155) T cd05120 108 --LVLCHGDLHPGNILVDDGKILGIIDWEYAGYGPPAFDLAAALLFN 152 (155) T ss_pred --CEEECCCCCCCCEEEECCCEEEEECCHHCCCCCHHHHHHHHHHHH T ss_conf --326917678670899189979998174316388999999999761 No 12 >pfam03881 Fructosamin_kin Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function. Probab=99.88 E-value=3.1e-20 Score=150.65 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=149.0 Q ss_pred CEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 605310046681200179994399589998216699889999999999985326-7755510010267787522451557 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) ++++.+++++|..|..|+|+|+.++|++|+-.+ ........|..-|+.|++.+ ++||+|+..- ...+..+.| T Consensus 17 ~i~~~~~v~GGdIn~a~~l~~~~~~~FvK~~~~-~~~~~F~~Ea~gL~~L~~~~~~~vP~vi~~g------~~~~~~~Lv 89 (287) T pfam03881 17 TITEREKVGGGDINQAYRISDGEQRYFVKLNER-EALAMFEAEAEGLELLARTQTIRVPRVIAWG------STRDHSFLV 89 (287) T ss_pred CCCEEEECCCCCHHHEEEEEECCCCEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEC------CCCCCEEEE T ss_conf 310334428841733688980897689996795-4278999999999989866998899568863------459964899 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCC---------CCCCCCCCHHHHHHHHHH-HHHCCC----H-HHH Q ss_conf 8647887076899899999999864367530--6875---------433231124564576675-200155----2-278 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKT--KNFH---------LYRKNTLSPLNLKFLWAK-CFDKVD----E-DLK 164 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~--~~f~---------~~r~~~~~~~~~~~~~~~-~~~~~~----~-~~~ 164 (316) ++||+-. ..++..-.++|+.||+||+.. ..|- ....|.+...|.....+. +.+.++ . ... T Consensus 90 le~i~~~---~~~~~~~~~LG~~LA~LH~~~~~~~FGf~~d~~iG~~~Q~N~w~~~W~~Ff~~~RL~~ql~~~~~~~~~~ 166 (287) T pfam03881 90 LEYLPLG---PDNTGSAYQLGQQLAKLHQWGEQKQFGFDFDNTIGSTPQPNRWQSSWADFFAEQRIGWQLQLAKEKGLSF 166 (287) T ss_pred EEECCCC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 8610358---9980789999999999871489889889888987760468987688999999982999999999749976 Q ss_pred HHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 89999999888765210777-44402234642256279604873162135680001989999864311688878788999 Q gi|254780795|r 165 KEIDHEFCFLKESWPKNLPT-GIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFS 243 (316) Q Consensus 165 ~~l~~~l~~~~~~~~~~Lp~-g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~ 243 (316) ..+...++.+.+..+...|. +++||||+.+|++++.+....+|| =-|.++.+-+|||++- -.|.++. . T Consensus 167 ~~~~~l~~~l~~~l~~~~~~PsLlHGDLW~GN~~~~~~G~p~liD-PA~yyG~rE~DLAm~~------lFggf~~----~ 235 (287) T pfam03881 167 GDIDRLVERVADLLSGHQPQPSLLHGDLWSGNAAFTADGEPVIFD-PACYYGDRECDLAMTE------LFGGFPP----D 235 (287) T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEEC-CHHCCCCCHHHHHHHH------HCCCCCH----H T ss_conf 779999999999842589983002255356525584799878975-4311577077678777------3278759----9 Q ss_pred HHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9988764188998999999999 Q gi|254780795|r 244 ILNGYNKVRKISENELQSLPTL 265 (316) Q Consensus 244 ~l~gY~~vrpLs~~E~~~l~~l 265 (316) |.++|+++.||.+.-.+..+++ T Consensus 236 Fy~~Y~~~~Pl~~g~~~R~~lY 257 (287) T pfam03881 236 FYDGYQSVYPLDEGYEERKPLY 257 (287) T ss_pred HHHHHHHHCCCCCCHHHHHHHH T ss_conf 9999997279982889999999 No 13 >cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph Probab=99.88 E-value=1.8e-21 Score=158.65 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=128.7 Q ss_pred EEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 53100466812001799943995899982166998-89999999999985326775551001026778752245155786 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ++++++++|.+|.||+|++.+++||+|++.+.... .+-..|...++.+++.|+. |+++..-. ..-+.|++ T Consensus 1 ~~i~~l~gGlTN~~y~v~~~~~~yvlRi~~~~~~~~idR~~E~~~~~~~~~~gl~-P~~~~~d~--------~~g~~i~e 71 (170) T cd05151 1 IHISPLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIG-PKLYYFDP--------ETGVLITE 71 (170) T ss_pred CEEEECCCCCCCCEEEEEECCEEEEEECCCCCCHHHCCHHHHHHHHHHHHHCCCC-CEEEEEEC--------CCCEEEEE T ss_conf 9468848852288799998996899981898741010899999999999974999-82799966--------89969999 Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 478870768---99899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 104 FIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 104 ~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) |++|..... .+++.+.++++.++++|.... T Consensus 72 ~i~g~~~~~~~~~~~~~~~~la~~l~~lH~~~~----------------------------------------------- 104 (170) T cd05151 72 FIEGSELLTEDFSDPENLEKIAKLLKKLHSSPL----------------------------------------------- 104 (170) T ss_pred EECCCCCCCHHHCCHHHHHHHHHHHHHHHCCCC----------------------------------------------- T ss_conf 766850582120899999999999999857999----------------------------------------------- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 0777444022346422562796048731621356800019899998643116888787889999988764188 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRK 253 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrp 253 (316) .|..+||||++++|+|++++++. +||||+|+.+.+.||||..++. ..++.+....|++.|...-| T Consensus 105 -~~~v~cHnDl~~~Nil~~~~~~~-lIDwEYa~~~dp~fDlA~~~~~------~~l~~~~~~~ll~~Y~~~~~ 169 (170) T cd05151 105 -PDLVPCHNDLLPGNFLLDDGRLW-LIDWEYAGMNDPLFDLANFFSE------AKLSEDQEEELLEAYFGREP 169 (170) T ss_pred -CCCEECCCCCCCCCEEEECCEEE-EEEHHHCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHHHHCCCC T ss_conf -99660268898021998899089-9840125678879999999988------48999999999999818999 No 14 >cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer Probab=99.87 E-value=5.6e-20 Score=148.92 Aligned_cols=226 Identities=21% Similarity=0.285 Sum_probs=139.2 Q ss_pred EEEECCCCCEEEEEEEEECC--------CCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 31004668120017999439--------95899982166998-8999999999998532677555100102677875224 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSK--------GTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~--------~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +++.|+||++|.+|+|+..+ .++++|||-+.+.. .+-..|...+..|+++|+. |+.+-.- .| T Consensus 2 ~v~~l~GGiTN~ly~v~~~~~~~~~~~~~~vlvRIyG~~te~~IdR~~E~~~~~~Ls~~gig-pkl~~~F--------~n 72 (302) T cd05156 2 EVSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERNLG-PKLYGIF--------PN 72 (302) T ss_pred EEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEE--------CC T ss_conf 69990774146118998378776678888699994889866327769999999999975999-7189992--------89 Q ss_pred CCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH------HHHHHHHHHHHHCCCHHHH--- Q ss_conf 5155786478870768---998999999998643675306875433231124------5645766752001552278--- Q gi|254780795|r 97 KPANIFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSP------LNLKFLWAKCFDKVDEDLK--- 164 (316) Q Consensus 97 k~~~L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~--- 164 (316) ..+.+|++|+++.. .++.....+++.||++|..-.... ..+....+ ..|................ T Consensus 73 --Grieefi~g~~L~~~dl~~p~~~~~IA~~l~~lH~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 149 (302) T cd05156 73 --GRIEEFIPSRTLTTEELRDPDISAEIARRMAKLHSIVVPLS-PEERDLTPAIWKLLKQWLDLAETVIEIVDSDSEKLL 149 (302) T ss_pred --CEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf --65999878701896781496899999999998844667788-863334444999999999860100133204666665 Q ss_pred ----HHHHHHH----HHHHHHH--HHCCCCCEEECCCCCCCEEECC-----CCCEEEECCCCCCCCHHHCCHHHHHHHHH Q ss_conf ----8999999----9888765--2107774440223464225627-----96048731621356800019899998643 Q gi|254780795|r 165 ----KEIDHEF----CFLKESW--PKNLPTGIIHADLFPDNVLFYN-----NKIMGLIDFYFSCNDFLMYDLSICINAWC 229 (316) Q Consensus 165 ----~~l~~~l----~~~~~~~--~~~Lp~g~IHgDl~~~NiL~~~-----~~i~giIDF~~~~~~~~i~DLAi~i~~~c 229 (316) ....... ..+.+.. ....|-.+||+|+.++|+|.++ +++. +||||+|++.+++||||--.+-|| T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVfcHNDLl~gNil~~~~~~~~~~l~-~IDfEYag~N~r~fDiaNhF~E~~ 228 (302) T cd05156 150 EVELSLFLEDEAKYLRFLLESTSEESGSPVVFCHNDLQEGNILLLNPSSETKKLV-LIDFEYASYNYRGFDIANHFCEWM 228 (302) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCEE-EEEEECCCCCCHHHHHHHHHHHHH T ss_conf 4578889999999999999750203689768765477755078616767777269-998503666702677888889886 Q ss_pred HCCCC------------CCCHHHHHHHHHHHHHC-------CCCCHHHHHHHHH Q ss_conf 11688------------87878899999887641-------8899899999999 Q gi|254780795|r 230 FDENN------------TYNPSRGFSILNGYNKV-------RKISENELQSLPT 264 (316) Q Consensus 230 ~~~~~------------~~d~~~~~~~l~gY~~v-------rpLs~~E~~~l~~ 264 (316) .+.+. -.+.+....|++.|-+. ..-++.|.+.|.. T Consensus 229 ~dY~~~~~p~~~~d~~~yPs~e~q~~Fi~~Yl~~~~~~~~~~~~~~~~v~~l~~ 282 (302) T cd05156 229 YDYHDPEPPFFKIHEDKYPTEEQRLNFISAYLSESLKGKNSVEEREKEVKDLLE 282 (302) T ss_pred HCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 104778788630476669099999999999999852456787725999999999 No 15 >COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only] Probab=99.87 E-value=9.4e-20 Score=147.48 Aligned_cols=244 Identities=14% Similarity=0.184 Sum_probs=162.3 Q ss_pred CCCHHHHHHHHH-HCC-CCCEEEEEECCCCCEEEEEEEEECCCCEEEEEE---CCCCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 089999999998-489-986053100466812001799943995899982---166998899999999999853267755 Q gi|254780795|r 6 HPPQKEIQSFVQ-EYA-IGQLNSVQPIIHGVENSNFVIQTSKGTFILTIY---EKRMNEKDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 6 ~ls~~el~~il~-~y~-lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~---e~~~~~~~l~~~~~ll~~L~~~gipvP 80 (316) .+....+...+. +.. .-....+..+++|..|.+|++..+..+||||.- ...........+..+|..|....+||| T Consensus 7 ~~~~~~l~~~l~~~ip~~~~~~~v~~~~~G~sn~t~~~~~~~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p 86 (321) T COG3173 7 ALDIAALAAYLRSQIPGYAGLLIVEEISGGWSNDTFRLGDTGQKYVLRKPPRGDPVESAHDEKREYRVIAALLDVDVPVP 86 (321) T ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 67999999999966767678762100368754305897358845787668765540246677758999997467899986 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC-----CCH-HHHH-HHHHHHHHHHHHC-CCCCCCCC----CCCCHHHH Q ss_conf 51001026778752245155786478870768-----998-9999-9999864367530-68754332----31124564 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNH-----ISD-IHCE-EIGSMLASMHQKT-KNFHLYRK----NTLSPLNL 148 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~-----~~~-~~~~-~lG~~La~lH~~~-~~f~~~r~----~~~~~~~~ 148 (316) .++---...+ .|.||.|++|++|+.... ... .... .+|+.||.||++- .+++.... .......| T Consensus 87 ~~~~~~~~~~----~g~pf~v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~ 162 (321) T COG3173 87 RAFGLCGEGY----LGTPFYVMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARW 162 (321) T ss_pred CCCCCCCCCC----CCCCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 2122466677----788559998744645267677544358899999999999985799767898786675233304678 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHH Q ss_conf 5766752001552278899999998887652-107774440223464225627960487316213568000198999986 Q gi|254780795|r 149 KFLWAKCFDKVDEDLKKEIDHEFCFLKESWP-KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINA 227 (316) Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~ 227 (316) ...+....... ............++....| .+-+.+++|||++++|+|+++++.+|||||+-+..|.+..||++.| T Consensus 163 ~~~~~~~~~~~-~~~~p~~~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~Dl~~~~-- 239 (321) T COG3173 163 DDEYRRAKKEL-GGRIPLADRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLEDLAIIC-- 239 (321) T ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHH-- T ss_conf 89999998741-677826899999998558876789656647755687887289725899655666688389988988-- Q ss_pred HHHCCCC----CCC--HHHHHHHHHHHHHCCCCCH Q ss_conf 4311688----878--7889999988764188998 Q gi|254780795|r 228 WCFDENN----TYN--PSRGFSILNGYNKVRKISE 256 (316) Q Consensus 228 ~c~~~~~----~~d--~~~~~~~l~gY~~vrpLs~ 256 (316) |+....- .+. ..-...+++.|...+-+.. T Consensus 240 W~~~~~~~~~~~~~~~~~~~~~l~a~y~~~~G~~~ 274 (321) T COG3173 240 WTIFDEPAARAIFRLGVPALDELLATYARARGLAL 274 (321) T ss_pred HCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 40454433331026676518999999998349464 No 16 >cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo Probab=99.86 E-value=4.3e-20 Score=149.69 Aligned_cols=193 Identities=19% Similarity=0.303 Sum_probs=124.4 Q ss_pred EEEEECCCCCEEEEEEEEECC---CCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 531004668120017999439---95899982166998-89999999999985326775551001026778752245155 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTSK---GTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~~---~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +++++|+||++|.||+|+... .+||+|||-+.++. -+=..|...+..|++.|+ .|+.+..-+ | .. T Consensus 1 i~v~~l~GGlTN~~y~v~~~~~~~~~~v~Ri~G~~te~~IdR~~E~~~~~~l~~~gl-~p~l~~~f~--------~--gr 69 (235) T cd05157 1 ITFKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL-APKLYATFQ--------N--GL 69 (235) T ss_pred CEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHCCC-CCCEEEECC--------C--CE T ss_conf 969982785367428998658998789999388986734778999999999998599-971899759--------9--77 Q ss_pred EEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCC----CCC-C-CHHHHHHHHHHHH-------HCCCHHHH Q ss_conf 786478870768---998999999998643675306875433----231-1-2456457667520-------01552278 Q gi|254780795|r 101 IFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYR----KNT-L-SPLNLKFLWAKCF-------DKVDEDLK 164 (316) Q Consensus 101 L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r----~~~-~-~~~~~~~~~~~~~-------~~~~~~~~ 164 (316) |.+|++|+++.. .++..+..+++.|++||+.-....... ... + .+..|.....+.. ........ T Consensus 70 ieefi~g~~l~~~d~~~~~~~~~IA~~l~~lH~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (235) T cd05157 70 IYEFIPGRTLEPEDLRNPKIYRLIARELAKLHSIKPPEAISSPGTPKPILWPTIRKWINLVPTEFKKPEKFQKKTKAISF 149 (235) T ss_pred EEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 99977785599678009489999999999986476756643345664528999999999857653005655120012219 Q ss_pred HHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEEC--CCCCEEEECCCCCCCCHHHCCHHHHHHHHH Q ss_conf 89999999888765-210777444022346422562--796048731621356800019899998643 Q gi|254780795|r 165 KEIDHEFCFLKESW-PKNLPTGIIHADLFPDNVLFY--NNKIMGLIDFYFSCNDFLMYDLSICINAWC 229 (316) Q Consensus 165 ~~l~~~l~~~~~~~-~~~Lp~g~IHgDl~~~NiL~~--~~~i~giIDF~~~~~~~~i~DLAi~i~~~c 229 (316) ..+.+.+..+.+.. ....|..+||+|+.++|+|++ ++++. +||||+|+++++.||||-..+-|| T Consensus 150 ~~l~~~~~~l~~~l~~~~~~~v~CHNDL~~~Nil~~~~~~~l~-lIDfEYag~N~~~fDiAN~F~E~~ 216 (235) T cd05157 150 EQLRDEISWLKELLSALNSPIVFCHNDLLSGNIIYNEEKNSVK-FIDYEYAGYNYRAFDIANHFNEWA 216 (235) T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCEE-EEEECCCCCCCHHHHHHHHHHHHC T ss_conf 9999999999999734699802444668745467617999589-997788888831888999998864 No 17 >cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista Probab=99.85 E-value=6.2e-20 Score=148.65 Aligned_cols=205 Identities=17% Similarity=0.197 Sum_probs=131.2 Q ss_pred EEEC-CCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 1004-668120017999439958999821669988999999999998532-67755510010267787522451557864 Q gi|254780795|r 27 VQPI-IHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 27 ~~~i-~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) ++++ ++|..|.+|+| ..++|+|+=........+..|..++..|+.+ .+|||.|+..-... ..-..++.+++| T Consensus 2 i~~~~~~G~dN~~~rl---G~~~v~R~Prr~~~a~~l~~E~~~L~~La~~lpv~VP~pv~~g~p~---~~yp~pw~v~~~ 75 (235) T cd05155 2 IEPVDSGGTDNATFRL---GDDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPG---EGYPWPWSVYRW 75 (235) T ss_pred CCCCCCCCCEEEEEEE---CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCC---CCCCCCCEEEEC T ss_conf 7655789840148996---8887997579701599999999999987243887889843328985---568976344521 Q ss_pred CCCCCCCCC---C-HHHHHHHHHHHHHHHHHCC-CCCC-CCCCC---CCHHHHHHHHHHH----HHCCCHHHHHHHHHHH Q ss_conf 788707689---9-8999999998643675306-8754-33231---1245645766752----0015522788999999 Q gi|254780795|r 105 IKGSPLNHI---S-DIHCEEIGSMLASMHQKTK-NFHL-YRKNT---LSPLNLKFLWAKC----FDKVDEDLKKEIDHEF 171 (316) Q Consensus 105 i~G~~~~~~---~-~~~~~~lG~~La~lH~~~~-~f~~-~r~~~---~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l 171 (316) ++|+..... + .....++|+.|+.||.+.. +.+. ...+. .....+....... ....+......+- T Consensus 76 l~G~~~~~~~~~~~~~~a~~La~~L~aLH~id~~~~~~~g~~~~~r~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~w--- 152 (235) T cd05155 76 LEGETATAAALSDPSEFAEDLADFLAALRQIDPSGGPPAGRHNFLRGGDLAVRDAETREAIEALEGVIDVDAARALW--- 152 (235) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH--- T ss_conf 68877874676787999999999999973789656886676664445678999899999998733664779999999--- Q ss_pred HHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 988876521077744402234642256279604873162135680001989999864311688878788999998876 Q gi|254780795|r 172 CFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYN 249 (316) Q Consensus 172 ~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~ 249 (316) +.... .+..-+..+||||++++|||+++++++|||||++++.|..++|||++ |.+ ++.+--+.|.+.|. T Consensus 153 ~~al~-~p~~~~~v~vHGDl~p~NvLv~dgrlsgVIDwg~~~vGDPA~DLa~a---w~~-----~~~~~r~~f~~~~~ 221 (235) T cd05155 153 EAALR-APWWGPPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVGDPACDLAIA---WTL-----LDEDSRAAFRAALG 221 (235) T ss_pred HHHHH-CCCCCCCEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCHHHHHHH---HHH-----CCHHHHHHHHHHHC T ss_conf 99974-75768988770798887189889928999877777658818999999---984-----79889999999858 No 18 >TIGR02721 ycfN_thiK thiamine kinase; InterPro: IPR014093 Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (ThiK), and additional proteobacterial homologues taken to be orthologs with equivalent function.. Probab=99.74 E-value=5e-17 Score=129.84 Aligned_cols=202 Identities=18% Similarity=0.287 Sum_probs=142.3 Q ss_pred ECCCCCEEEEEEEEECCC-CEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 046681200179994399-589998216699--88999999999998532677555100102677875224515578647 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKG-TFILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316) ...+|.+|.+|+|+...| .||.|--.+... ..+=..|.++|++|+..++. |+|+.-.. -+.|++|+ T Consensus 3 ~~~gGLtn~sw~i~~~~G~~~V~R~~s~~~~~~g~~R~rEy~~L~~l~~~~la-P~~~~~~~----------~wllVEWL 71 (262) T TIGR02721 3 TLSGGLTNESWRIEAHQGISFVWRRQSPVDKQLGVDRQREYAILQALSAVKLA-PKPILVNE----------HWLLVEWL 71 (262) T ss_pred ECCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEECC----------CCEEEEEC T ss_conf 21545505426764189725883268874121460258899999741305788-84477638----------71688604 Q ss_pred CCCCCCC-----CCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HH Q ss_conf 8870768-----9989999999986436753068-754332311245645766752001552278899999998887-65 Q gi|254780795|r 106 KGSPLNH-----ISDIHCEEIGSMLASMHQKTKN-FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE-SW 178 (316) Q Consensus 106 ~G~~~~~-----~~~~~~~~lG~~La~lH~~~~~-f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~ 178 (316) ||+.... ...+...+++..|+++|..... .++. -.......|..+.+. .........++.+.+ .. T Consensus 72 ~G~v~~~dka~~~~l~~~~~~A~~l~~lh~~p~~g~p~~-----l~~~~~~YW~~~dp~---r~tp~~lr~~~~f~~~~~ 143 (262) T TIGR02721 72 EGEVITKDKAEFVALDLLGELAALLAQLHSQPRFGYPLS-----LKARIAQYWLQIDPA---RRTPEWLRLYKQFRSAPE 143 (262) T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHCCC T ss_conf 875413543235562001368999999710578888724-----488999864650787---256999999999964577 Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH Q ss_conf 210777444022346422562796048731621356800019899998643116888787889999988764188998 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE 256 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~ 256 (316) |.-|+-.+||-|.|.+|++.....+. +||||+|+.|...+|||..+. .+.+|....+.|++.|++.|.+.+ T Consensus 144 p~~l~laplH~Dvh~~Nlv~~~~G~k-LIDWEYA~dgDialeLa~~~~------~n~~d~~~~~~~~~~Yc~~~~~~~ 214 (262) T TIGR02721 144 PAPLKLAPLHMDVHAYNLVVTPQGLK-LIDWEYASDGDIALELAAIIR------ANHWDEEQQQDFVQRYCQRRRIYS 214 (262) T ss_pred CCHHHHHHHHCCCCCCCCEECCCCCE-EEHHHCCCCCCHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHCCCH T ss_conf 44044300330346431244588753-531111034677899999999------713781689999999987621542 No 19 >cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported Probab=99.74 E-value=1.6e-16 Score=126.51 Aligned_cols=217 Identities=14% Similarity=0.246 Sum_probs=127.3 Q ss_pred HHHHCCCCC-EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 998489986-05310046681200179994399-5899982166998899999999999853267755510010267787 Q gi|254780795|r 15 FVQEYAIGQ-LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316) Q Consensus 15 il~~y~lg~-~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316) +....||.- ..+++---.|..|..-++...+| +||+|+-+...-...++.|..++..|+.+ +|++.|-.... T Consensus 3 ~a~~~gl~~~~~~~~~ne~G~Df~v~~~~d~~G~~WV~R~PRr~e~~~~l~~E~~~L~~l~~~-Lp~~VP~~~i~----- 76 (276) T cd05152 3 LARKHGLTLKPETLSLNESGLDFQVVFAKDTDGVPWVLRIPRRPDVSERAAAEKRVLALVRKH-LPVQVPDWRVH----- 76 (276) T ss_pred HHHHCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEC----- T ss_conf 357519986767414446666405999984789776895589778999999999999986105-87688980513----- Q ss_pred HHCCCCEEEEECCCCCCC----------------CCCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCHHHHHH Q ss_conf 522451557864788707----------------68998999999998643675306------87543323112456457 Q gi|254780795|r 93 FLCKKPANIFSFIKGSPL----------------NHISDIHCEEIGSMLASMHQKTK------NFHLYRKNTLSPLNLKF 150 (316) Q Consensus 93 ~~~~k~~~L~~~i~G~~~----------------~~~~~~~~~~lG~~La~lH~~~~------~f~~~r~~~~~~~~~~~ 150 (316) +...+.|++++|++. ...++....++|+.|+.||.... +++....... -..+.. T Consensus 77 ---~~eliaYp~L~G~P~~~~d~~~~~~~w~~d~~~~~~~~a~~Lg~~LaaLHsip~~~~~~~G~p~~~~~~~-r~~~~~ 152 (276) T cd05152 77 ---TPELIAYPKLPGVPAATIDPEIGEYVWNFDHKNPPEVFIESLAKALAELHSIPQDEAEAAGIPVETPEEV-RQTMAD 152 (276) T ss_pred ---CCCCEEECCCCCEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHH-HHHHHH T ss_conf ---7742120453884221103332552112566665679999999999998678988898679987899999-999999 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH--HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHH Q ss_conf 66752001552278899999998887--652107774440223464225627-960487316213568000198999986 Q gi|254780795|r 151 LWAKCFDKVDEDLKKEIDHEFCFLKE--SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINA 227 (316) Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~ 227 (316) .++......... ...+......+.. .|+ ...++||||++++|||+++ ++|+|||||++++.|.+++|+|--.. T Consensus 153 ~~~~~~~~~~v~-~~L~~Rwe~~L~d~~~w~--~~~~lvHGDL~~~hiLvd~~~rvtGVIDW~da~VGDPA~Dfa~l~~- 228 (276) T cd05152 153 RMDRVKEEFGVS-EALWNRWQAWLDDDSYWP--RHTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVGDPARDFVLHYR- 228 (276) T ss_pred HHHHHHHCCCCC-HHHHHHHHHHHCCCCCCC--CCCEEEECCCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHH- T ss_conf 999998603778-799999999845412367--8863463575577079848985899844301477884899999998- Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 4311688878788999998876418 Q gi|254780795|r 228 WCFDENNTYNPSRGFSILNGYNKVR 252 (316) Q Consensus 228 ~c~~~~~~~d~~~~~~~l~gY~~vr 252 (316) .+.++-...+|+.|.+.. T Consensus 229 -------~~g~~~l~~~l~~Y~~ag 246 (276) T cd05152 229 -------IFGEAGLERLIDAYEAAG 246 (276) T ss_pred -------HCCHHHHHHHHHHHHHCC T ss_conf -------728899999999999758 No 20 >COG3001 Uncharacterized protein conserved in bacteria [Function unknown] Probab=99.73 E-value=7.6e-16 Score=122.19 Aligned_cols=226 Identities=15% Similarity=0.209 Sum_probs=142.1 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHH Q ss_conf 99848998605310046681200179994399589998216699889999999999985326-77555100102677875 Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYGF 93 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~~ 93 (316) +..+.+.+++++.+.+++|-.|.-|.|.+...+|++|.-.. ........|..=|+.|++.+ +.||+||.. .. T Consensus 9 lse~lg~~~i~er~~v~gG~inea~~v~dg~~~~FvK~n~~-~~~~~f~AEa~gL~~la~s~ti~VP~vi~~------G~ 81 (286) T COG3001 9 LSEQLGEGEIKEREEVSGGDINEAWRLRDGTDPFFVKCNQR-EQLSMFTAEADGLELLARSNTITVPKVIAV------GA 81 (286) T ss_pred HHHHHCCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEECCH-HHHHHHHHHHHHHHHHHHCCCCCCCCEEEE------CC T ss_conf 99870814444005568864020357513885247870625-678789998877999987187346615884------47 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CC---------CCCCCCCCHHHHHHHHHHHHHCCCHH Q ss_conf 22451557864788707689989999999986436753068--75---------43323112456457667520015522 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN--FH---------LYRKNTLSPLNLKFLWAKCFDKVDED 162 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~--f~---------~~r~~~~~~~~~~~~~~~~~~~~~~~ 162 (316) .++..+.|++|+|=. ..+....+++|+.||+||+++.. |- ...+|.|...|.....++.....-+. T Consensus 82 ~~~~sylVle~L~~~---~~d~~s~~~~GqqLA~LH~~~~~~~fG~d~dn~iG~t~QpN~W~~~Wa~FfaeqRig~qlql 158 (286) T COG3001 82 SRDHSYLVLEYLPTG---PLDAHSAFILGQQLARLHQWGGQAQFGLDFDNYIGTTPQPNTWQRRWATFFAEQRIGWQLQL 158 (286) T ss_pred CCCEEEEEEEECCCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 787068998623679---99823689999999999861376566765666457878898772349999898652499999 Q ss_pred HH------HHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCEEECCCCCEEEECCCCCC-CCHHHCCHHHHHHHHHHCCCC Q ss_conf 78------89999999888765210777-44402234642256279604873162135-680001989999864311688 Q gi|254780795|r 163 LK------KEIDHEFCFLKESWPKNLPT-GIIHADLFPDNVLFYNNKIMGLIDFYFSC-NDFLMYDLSICINAWCFDENN 234 (316) Q Consensus 163 ~~------~~l~~~l~~~~~~~~~~Lp~-g~IHgDl~~~NiL~~~~~i~giIDF~~~~-~~~~i~DLAi~i~~~c~~~~~ 234 (316) .+ ..++.....+.+...+.-|+ +++|||++.+|+.+-.+... ++ |=|| +|.+-.|||++= -.| T Consensus 159 ar~rg~~f~did~~~~~i~elL~~hqpqPsLlHGDLW~gN~a~~~~GPv-~f--DPA~y~GDrE~Dlam~e------lFg 229 (286) T COG3001 159 ARERGLTFGDIDAIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDGPV-IF--DPACYWGDRECDLAMLE------LFG 229 (286) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCE-EE--CCCCCCCCCCCCEEHHH------HHC T ss_conf 9980898567999999999987227999530114522243223578973-54--65012688431310675------516 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHH--HHHHHH Q ss_conf 87878899999887641889989--999999 Q gi|254780795|r 235 TYNPSRGFSILNGYNKVRKISEN--ELQSLP 263 (316) Q Consensus 235 ~~d~~~~~~~l~gY~~vrpLs~~--E~~~l~ 263 (316) .+- ..|-+||+|+.||.+. |++.++ T Consensus 230 gfp----~efy~gY~sv~PL~~G~~eRk~iY 256 (286) T COG3001 230 GFP----PEFYDGYQSVSPLPAGYLERKPIY 256 (286) T ss_pred CCC----HHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 776----999976640688987647776899 No 21 >TIGR02904 spore_ysxE spore coat protein YsxE; InterPro: IPR014253 Members of this entry, which includes the Bacillus subtilis protein YsxE, are found only in the family Bacillaceae, part of the the endospore-forming group within the Firmicutes. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat and is a homologue of CotS (IPR014255 from INTERPRO).. Probab=99.72 E-value=7.8e-16 Score=122.13 Aligned_cols=245 Identities=15% Similarity=0.188 Sum_probs=162.0 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHH Q ss_conf 99999848998605310046681200179994399589998216699889999999999985326775551-00102677 Q gi|254780795|r 12 IQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIP-IPRNDGKL 90 (316) Q Consensus 12 l~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~p-i~~~~G~~ 90 (316) ++.||.+|+| ....++.+ .+..++|.|++|-|-||-.. .+...++.++..+..|.++|++==.| .+|++|++ T Consensus 1 ~~~vL~~Y~l-~P~~~E~V----~~k~~kvytd~G~fALK~~~--~~~~~~~~f~~~~~~L~~kg~~~~vPvY~t~~G~y 73 (313) T TIGR02904 1 YEAVLEQYGL-QPEEMEQV----TGKLVKVYTDQGVFALKKLE--ADRNTVEEFVSQIQVLKEKGFSRIVPVYPTKDGEY 73 (313) T ss_pred CCHHHHHCCC-CCCCEEEE----CCCEEEEECCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCH T ss_conf 9112523278-83101454----16389987689864255437--77878999999999998768984200000376203 Q ss_pred HHHHCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------CCCHHHHHHHHHHHH Q ss_conf 8752245155786478-87076899899999999864367530687543323-------------112456457667520 Q gi|254780795|r 91 YGFLCKKPANIFSFIK-GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKN-------------TLSPLNLKFLWAKCF 156 (316) Q Consensus 91 ~~~~~~k~~~L~~~i~-G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~-------------~~~~~~~~~~~~~~~ 156 (316) +..-+++.+.|+||++ ++.... ...+...+-+.||.||+.+..=..-... ......+...+.++. T Consensus 74 ~~~~g~~~YYLmPW~~r~e~~~~-~~~~~~~~f~~La~lH~~T~kt~~~~~E~~~~~ye~~~~~W~~~~~~~e~fi~~~E 152 (313) T TIGR02904 74 LLFAGEKLYYLMPWLDREERKEE-RNEQHEKMFRELALLHRKTVKTEEVTEEELKKHYERTKSRWEREKEVLEEFIVEAE 152 (313) T ss_pred HHHCCCCCCCCCHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 22224522344302311555465-67899999999999866643110112888888888778875101779999999998 Q ss_pred H--CCCHHH-------------HHHHHHHHHHHHHHH--HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC Q ss_conf 0--155227-------------889999999888765--21077744402234642256279604873162135680001 Q gi|254780795|r 157 D--KVDEDL-------------KKEIDHEFCFLKESW--PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY 219 (316) Q Consensus 157 ~--~~~~~~-------------~~~l~~~l~~~~~~~--~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~ 219 (316) . .+++=. .+...+.++...+.. ...-+..+|||=+-+.-.|+++.+-.=+|-||-|..++++. T Consensus 153 ~~~YMSPFeL~~c~yY~~v~~A~~fa~~~L~~W~E~~~e~~~~R~~l~HGkls~~H~l~~~~~~gYf~nfE~A~~~~P~~ 232 (313) T TIGR02904 153 AKWYMSPFELQACTYYHEVMRAAEFAKNKLEDWHEATKEKESARTVLVHGKLSLSHFLYDETREGYFINFEKASFASPLT 232 (313) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHEEEECCCCCCEEHHHHHCCCCCHH T ss_conf 52288858999999877899999999988889987522003131000326535212003138896410044323699677 Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 98999986431168887878899999887641889989999999999 Q gi|254780795|r 220 DLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLL 266 (316) Q Consensus 220 DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll 266 (316) ||+..+.- .+ ...+...+-+-.-+.-|++..||+++|+.+|...| T Consensus 233 Dl~~f~~r-~~-~~~p~~~~E~~~w~~~Y~k~~PL~~~E~~Ll~syL 277 (313) T TIGR02904 233 DLIAFFRR-SL-KTYPVEEDEVVEWLYTYEKELPLTDEEILLLLSYL 277 (313) T ss_pred HHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 89999998-75-01785057899998887732796377899999985 No 22 >cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio Probab=99.71 E-value=1.6e-15 Score=120.06 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=139.2 Q ss_pred ECCCCCE-EEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC Q ss_conf 0466812-001799943995899982166998899999999999853267755510010267787522451557864788 Q gi|254780795|r 29 PIIHGVE-NSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG 107 (316) Q Consensus 29 ~i~~G~~-Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G 107 (316) +++.|.. -+.|++....+.|.||+-- .....++.-|...|.+|+.+ +|||+++.. ..-++..+.|++.++| T Consensus 5 ~~~~G~SgA~V~r~~~~~~~~ylK~~~-~~~~~~l~~Ea~rl~WL~~~-~pvP~Vl~~------~~~~~~~~Llt~av~G 76 (244) T cd05150 5 RVTEGQSGATVYRLDGKNPGLYLKIAP-SGPTYELEREAERLRWLAGK-LPVPEVIDY------GSDDGRAWLLTSAVPG 76 (244) T ss_pred CCCCCCCCCEEEEECCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCC-CCCCEEEEE------ECCCCCCEEEEECCCC T ss_conf 167887778799970799857999665-88733369999999998505-999759996------0258874688943389 Q ss_pred CCCCCC----C-HHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHHC--CCHHH-HHHHHHHHHHHHHH Q ss_conf 707689----9-899999999864367530-6875433231124564576675-2001--55227-88999999988876 Q gi|254780795|r 108 SPLNHI----S-DIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFDK--VDEDL-KKEIDHEFCFLKES 177 (316) Q Consensus 108 ~~~~~~----~-~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~l~~~l~~~~~~ 177 (316) ++.... + ...+..+|+.|.+||... .+.|..+.-...+.......+. ..+. ++... -.--.+.++.+... T Consensus 77 ~~a~~~~~~~~~~~~~~~lA~~Lr~LH~lp~~~CPf~~~l~~~l~~A~~~~~~g~vd~~d~~~~~~g~~~~el~~~l~~~ 156 (244) T cd05150 77 VPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEAT 156 (244) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHC T ss_conf 75444455439999999999999985389921189866289999999999970688945676100499999999999843 Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH Q ss_conf 52107774440223464225627960487316213568000198999986431168887878899999887641889989 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISEN 257 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~ 257 (316) .|..-...+||||+.+.|+|+++++++|+|||+-++.+.+.+|||.++. +...+. ..+.....|++.|-.. --+. T Consensus 157 ~p~~~~~v~~HGD~~~~N~l~~~~~~~g~iD~~~~g~aDr~~DLa~~~~--sl~~n~-~~~~~~~~Fl~~YG~~--~~D~ 231 (244) T cd05150 157 RPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVADRYQDLALAVR--SLRENL-GGEEYAARFLDRYGID--APDP 231 (244) T ss_pred CCCCCCCEEECCCCCCCCEEEECCEEEEEEECCCCCCCCHHHHHHHHHH--HHHHCC-CCHHHHHHHHHHCCCC--CCCH T ss_conf 9975684787788888888985891899997666677777999999996--775306-9838999999980999--8998 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780795|r 258 ELQSLPTL 265 (316) Q Consensus 258 E~~~l~~l 265 (316) |+-..+.+ T Consensus 232 ~rl~~y~l 239 (244) T cd05150 232 EKLAYYRL 239 (244) T ss_pred HHHHHHHH T ss_conf 99999998 No 23 >pfam01633 Choline_kinase Choline/ethanolamine kinase. Choline kinase catalyses the committed step in the synthesis of phosphatidylcholine by the CDP-choline pathway. This alignment covers the protein kinase portion of the protein. The divergence of this family makes it very difficult to create a model that specifically predicts choline/ethanolamine kinases only. However if Choline_kinase_C is also present then it is definitely a member of this family. Probab=99.71 E-value=5.2e-16 Score=123.28 Aligned_cols=176 Identities=18% Similarity=0.196 Sum_probs=111.5 Q ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC---CCHHHHHH Q ss_conf 995899982166998-89999999999985326775551001026778752245155786478870768---99899999 Q gi|254780795|r 45 KGTFILTIYEKRMNE-KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNH---ISDIHCEE 120 (316) Q Consensus 45 ~~~yiLri~e~~~~~-~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~---~~~~~~~~ 120 (316) .++||+|||-+.++. .+-..|...+..|++.|+. |+++..-.| ..|.+|++|+++.. .++..... T Consensus 2 ~~~vl~Ri~G~~te~~IdR~~E~~~~~~l~~~gl~-p~~~~~f~~----------~~i~efi~g~~l~~~dl~~~~~~~~ 70 (208) T pfam01633 2 PRKVLVRIYGAGTELFIDRETEIVIFALLSERGLG-PKLYGFFPN----------GRVEEFIPSRTLSAEDLRDPEISKK 70 (208) T ss_pred CCEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEECC----------CCEEEEECCCCCCHHHCCCHHHHHH T ss_conf 98899985889857507789999999999985999-827999289----------8679978775389568259999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH-HHCCCCCEEECCCC Q ss_conf 99986436753068754332311-2456457667520015------5227889999999888765-21077744402234 Q gi|254780795|r 121 IGSMLASMHQKTKNFHLYRKNTL-SPLNLKFLWAKCFDKV------DEDLKKEIDHEFCFLKESW-PKNLPTGIIHADLF 192 (316) Q Consensus 121 lG~~La~lH~~~~~f~~~r~~~~-~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~-~~~Lp~g~IHgDl~ 192 (316) +++.|++||......... +..+ ....|........... .......+.+.+..+.+.. ....|..+||+|++ T Consensus 71 ia~~L~~lH~~~~~~~~~-~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~v~cHNDL~ 149 (208) T pfam01633 71 IAKRLREFHDIEPPGKKS-PSLWDTIRKWLKQAKELGESVNKSKGLKLIDLEDLEKEINELEKLLENLESPIVFCHNDLQ 149 (208) T ss_pred HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 999999996687888899-8789999999999876123200102312014999999999999999616998166540588 Q ss_pred CCCEEEC--CCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCC Q ss_conf 6422562--7960487316213568000198999986431168 Q gi|254780795|r 193 PDNVLFY--NNKIMGLIDFYFSCNDFLMYDLSICINAWCFDEN 233 (316) Q Consensus 193 ~~NiL~~--~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~ 233 (316) ++|+|+. ++++. +||||+|++++++||||--.+-||.+.+ T Consensus 150 ~~Nil~~~~~~~l~-lID~EYag~n~~~fDiAn~F~E~~~~y~ 191 (208) T pfam01633 150 PGNILLLESTNRLV-LIDFEYASYNYRAFDIANHFCEWAGDYH 191 (208) T ss_pred CCCEEEECCCCEEE-EEEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 66665628998499-9988405668516749999999864558 No 24 >PTZ00296 choline kinase; Provisional Probab=99.68 E-value=7e-14 Score=109.47 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=141.9 Q ss_pred EEEEECCCCCEEEEEEEEECC----------CCEEEEEECCCCCHH-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 531004668120017999439----------958999821669988-999999999998532677555100102677875 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTSK----------GTFILTIYEKRMNEK-DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF 93 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~~----------~~yiLri~e~~~~~~-~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~ 93 (316) +.++.|.+|.+|.-|.|.... .++.+|||-+.++.- +=..|..+-..|+++|+- |+..- . T Consensus 106 ~~v~qi~~gltnqlf~v~~~~~~~~~~~~~~~kVLvRIYG~~td~fiDR~~E~~vF~lLSe~glG-PKLyG--------~ 176 (439) T PTZ00296 106 LCVKQILSGLTNQLFEVGIKEDTAIEYHIIRRHVLFRIYGKDVDALYNPISEFEVYKTMSKYKIA-PLLLN--------T 176 (439) T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCC-CEEEE--------E T ss_conf 33999874213522899863144545654015489997369955476728999999999867999-80799--------8 Q ss_pred HCCCCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------HHHHHHHHHHHHHC--CCHH Q ss_conf 2245155786478870768---99899999999864367530687543323112------45645766752001--5522 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLS------PLNLKFLWAKCFDK--VDED 162 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~------~~~~~~~~~~~~~~--~~~~ 162 (316) +.| .++-+|++|+.+.. -+++....+|+.||++|..-.....+..-... ...|.....+..+. .... T Consensus 177 Fpn--GRIEEFI~grtLtt~dLrdP~IS~~IA~kLaefH~l~~p~~~p~~wdr~p~l~~~m~kW~~~l~~~~~~~~~~~d 254 (439) T PTZ00296 177 FDG--GRIEEWLYGDPLRIDDLKNKSILIGIANVLGKFHTLSRKRHLPEHWDKTPCIFKMMDKWKLALSKYKNIDKVKLD 254 (439) T ss_pred CCC--CEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCC T ss_conf 389--567874078427967856988999999999997387665678987654235999999999984214544320021 Q ss_pred HHHHH---HHHHHHHH--HH-HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCC- Q ss_conf 78899---99999888--76-5210777444022346422562796048731621356800019899998643116888- Q gi|254780795|r 163 LKKEI---DHEFCFLK--ES-WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNT- 235 (316) Q Consensus 163 ~~~~l---~~~l~~~~--~~-~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~- 235 (316) +...+ ........ .. ..-..|-.+||+|+..+||+-.++.++ +||||+|++.++.||+|--.+-|+++.+.. T Consensus 255 l~~~~~e~e~~~~~l~l~s~l~~~~~~vvFCHNDL~~~NIl~~~~~l~-~IDfEY~~yNy~~fDIaNHFcE~~~dY~~~~ 333 (439) T PTZ00296 255 IHKYIKESEKFIKFIKIYSKIDNIANAIVFCHNDLQENNIINTNKCLR-LIDFEYSGFNFLAADIANFFIETSIDYSVNA 333 (439) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEE-EEEECCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 877777899999999998641255687355413253023535888479-9985035667214568888776511468889 Q ss_pred -----------CCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHH Q ss_conf -----------7878899999887641------889989999999999---9999999999999876 Q gi|254780795|r 236 -----------YNPSRGFSILNGYNKV------RKISENELQSLPTLL---RGAALRFFLTRLYDSQ 282 (316) Q Consensus 236 -----------~d~~~~~~~l~gY~~v------rpLs~~E~~~l~~ll---~~aalRf~lsrl~d~~ 282 (316) ...+.-..|+..|-+. ..-++++.+.+-..+ ..|+-=||- +|... T Consensus 334 ~P~f~~d~~~YPs~e~q~~Fi~~YL~~~~~~~~~~~~~~~ve~ll~eVe~faLaSHLfWg--lWsII 398 (439) T PTZ00296 334 YPFFIIDKKKYISYENRILFITAYLSKYLDDSLAAPDPDIIDQFLEAIEVQALGAHLIWA--FWSII 398 (439) T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHH T ss_conf 985202701196989999999999987506678899889999999999998898899999--99998 No 25 >KOG2686 consensus Probab=99.62 E-value=2.2e-13 Score=106.32 Aligned_cols=230 Identities=19% Similarity=0.211 Sum_probs=143.5 Q ss_pred CEEEEEECCCCCEEEEEEEEECCC---------CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 605310046681200179994399---------58999821669988999999999998532677555100102677875 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTSKG---------TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF 93 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~~~---------~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~ 93 (316) ...+++.|.+|..|++|.++.... ++.||||....+..+...+.....+|+.+|+- |+. +.. T Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~LlRiyg~~~~~~~~~~Esv~fa~lSer~lG-PkL--------~G~ 111 (366) T KOG2686 41 EEQRLEVIPGGGSNLLFVVTSSASTTPIKDEPRKVLLRIYGQGVDFSQRETESVMFAILSERGLG-PKL--------YGF 111 (366) T ss_pred HHHEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CCE--------EEE T ss_conf 35325533577765479994576667865665206888725873377765478999997532778-600--------200 Q ss_pred HCCCCEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC---------- Q ss_conf 224515578647887076---8998999999998643675306875433231124564576675200155---------- Q gi|254780795|r 94 LCKKPANIFSFIKGSPLN---HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD---------- 160 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~---~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~---------- 160 (316) +.| ..+=+|+|-+.+. -..++....+|..++++|.. ..+..+.....+...+.+......... T Consensus 112 F~~--GR~EefipSRtL~~~~i~~p~~S~~Ia~~~~~~H~~--~~p~~ke~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~ 187 (366) T KOG2686 112 FSG--GRFEEFIPSRTLTLADIRDPEISKRIAAKLAEYHGI--EVPGPKEPRSLWERYKKWLKGAKKIKPTEVSYSCGPD 187 (366) T ss_pred CCC--CCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC T ss_conf 278--607661355334167542524789999999871677--6888854799999999998655404787552001542 Q ss_pred HHHHHHHHHHHHHHHHHH-HHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCC--- Q ss_conf 227889999999888765-2107774440223464225627--9604873162135680001989999864311688--- Q gi|254780795|r 161 EDLKKEIDHEFCFLKESW-PKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENN--- 234 (316) Q Consensus 161 ~~~~~~l~~~l~~~~~~~-~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~--- 234 (316) .-....+..++..+.+.. ..+-|.++||+|+-.+|+|..+ +.++ +|||++|+++|+.||||--.+-|..+... T Consensus 188 ~~~~~~l~~e~~~~~~~~e~~~~~vvFcHNDlq~gNiL~~~~t~~Lv-~IDfEYasyN~r~fDlanHf~E~~~DY~~~~~ 266 (366) T KOG2686 188 KLEIEDLLLELSLFRKWSELTKSPVVFCHNDLQYGNILLLNSTKELV-LIDFEYASYNPRGFDLANHFCEWAADYHTPTP 266 (366) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCEE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 34698899999999999854788756553656545321323778536-88642466782035378888875242367999 Q ss_pred ---------CCCHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHH Q ss_conf ---------878788999998876418-----89989999999999 Q gi|254780795|r 235 ---------TYNPSRGFSILNGYNKVR-----KISENELQSLPTLL 266 (316) Q Consensus 235 ---------~~d~~~~~~~l~gY~~vr-----pLs~~E~~~l~~ll 266 (316) .-+++..+.|+.+|-+.. .-.+.|...|+.-+ T Consensus 267 P~~~~~~~~~p~~e~~~~F~~sYl~~~~~~~~~~~~~ev~~L~~e~ 312 (366) T KOG2686 267 PGLKINPDLYPGEEQRQRFIESYLDSAAVKRKEPREKEVEKLLKEI 312 (366) T ss_pred CEEECCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 7050264118881999999999999862011273579999999998 No 26 >KOG4720 consensus Probab=99.56 E-value=2.3e-12 Score=99.60 Aligned_cols=260 Identities=15% Similarity=0.224 Sum_probs=154.5 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEE--E-CCCCEEEEEECCCCCHHHHH--HHHHHHHHHHHCCCCCCCCCCCCHHH Q ss_conf 9984899860531004668120017999--4-39958999821669988999--99999999853267755510010267 Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQ--T-SKGTFILTIYEKRMNEKDLP--VFIELLHYISRNKLPCPIPIPRNDGK 89 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~--t-~~~~yiLri~e~~~~~~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~ 89 (316) +-.+|+..++ ++++.++|++|.-+-+. + -...-..|+|-.+++. -++ .++..-..|+..|+. |+ T Consensus 75 Lrp~W~~~~v-~~~~fs~gitNkL~~~~vg~~~e~~v~vrvyg~~te~-vIdre~Ev~afk~L~a~G~a-p~-------- 143 (391) T KOG4720 75 LRPHWKPPEV-TFKRFSDGITNKLFSCYVGENMEDHVLVRVYGHNTEL-VIDRENEVIAFKLLAAYGFA-PK-------- 143 (391) T ss_pred HCCCCCCCCE-EEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCE-EECCHHHHHHHHHHHHCCCC-HH-------- T ss_conf 5435896101-5554234136777775325666406999841687750-12428889999999971767-12-------- Q ss_pred HHHHHCCCCEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH----CCC-- Q ss_conf 78752245155786478870768---998999999998643675306875433231124564576675200----155-- Q gi|254780795|r 90 LYGFLCKKPANIFSFIKGSPLNH---ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD----KVD-- 160 (316) Q Consensus 90 ~~~~~~~k~~~L~~~i~G~~~~~---~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~----~~~-- 160 (316) .+..++| ..+++|++|+.++. -++.....+++.||+||..-..=..+.++ -+......++.+.. ..+ T Consensus 144 Ly~tF~N--GLvyefi~g~tL~p~~mr~pki~~lIAr~mak~H~~~~~g~~pkp~--lw~km~~f~~lv~~~f~de~~kq 219 (391) T KOG4720 144 LYGTFNN--GLVYEFIQGKTLEPEHMREPKIFRLIARRMAKIHSIVATGGNPKPP--LWEKMRKFLQLVPTSFEDEINKQ 219 (391) T ss_pred HHHEECC--CEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCC--HHHHHHHHHHHCCCHHHCCCCHH T ss_conf 3410158--5677630674258665028378999999998761104578999982--89999999986683111032533 Q ss_pred ----HHHHHHHHHHHHHHHHHHH-HCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCC- Q ss_conf ----2278899999998887652-107774440223464225627--96048731621356800019899998643116- Q gi|254780795|r 161 ----EDLKKEIDHEFCFLKESWP-KNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAWCFDE- 232 (316) Q Consensus 161 ----~~~~~~l~~~l~~~~~~~~-~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~- 232 (316) ......+.+++.++++... -+-|--+||+|+-.+|++.+. +.|. +|||+++++.+.+||++--.|-+|--. T Consensus 220 ~~~~~~~~~~L~~Ei~~l~E~l~~L~sPVVFcHNDLL~~Niiy~~~~~~v~-fIDYEYa~yNY~afDIgNHFnE~aGv~e 298 (391) T KOG4720 220 NLFDEPSPEDLGEEISKLKEMLSMLKSPVVFCHNDLLCGNIIYDSEKGSVE-FIDYEYAGYNYQAFDIGNHFNEYAGVEE 298 (391) T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCEEECCCCCCEE-EEEECCCCCCHHHEEHHHHHHHHCCCCC T ss_conf 402489888999999999999985079869860442212353305668378-8861146665111005666786538876 Q ss_pred -CCCC--CHHHHHHHHHHHHHCC---CCCHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHCCCHHHC Q ss_conf -8887--8788999998876418---89989999999999---9999999999--99987608851231 Q gi|254780795|r 233 -NNTY--NPSRGFSILNGYNKVR---KISENELQSLPTLL---RGAALRFFLT--RLYDSQNMPCNALT 290 (316) Q Consensus 233 -~~~~--d~~~~~~~l~gY~~vr---pLs~~E~~~l~~ll---~~aalRf~ls--rl~d~~~~~~~~~~ 290 (316) +-.. ..+---++|+.|-+.. ..|+.|.+.|.+=. ..|+-=||.. -++..+.+-+..++ T Consensus 299 vDYSlyp~rE~Q~qwl~~YLq~~kg~evs~~eVe~lfvqvn~FalAsHlfWavWAllQA~~StIdFdyl 367 (391) T KOG4720 299 VDYSLYPTREEQLQWLRDYLQAYKGKEVSDTEVETLFVQVNQFALASHLFWAVWALLQAQNSTIDFDYL 367 (391) T ss_pred CCHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH T ss_conf 641018788899999999975406755788999999999888988878999999999864075023320 No 27 >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed Probab=99.42 E-value=3.9e-12 Score=98.19 Aligned_cols=166 Identities=24% Similarity=0.408 Sum_probs=101.8 Q ss_pred EEECCCCCEEEEEEEEECCCCEEEEEECCC-----CCH----------HHHHHHHHHHHHHHHCCCCCCCCCCCC---HH Q ss_conf 100466812001799943995899982166-----998----------899999999999853267755510010---26 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKGTFILTIYEKR-----MNE----------KDLPVFIELLHYISRNKLPCPIPIPRN---DG 88 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~~yiLri~e~~-----~~~----------~~l~~~~~ll~~L~~~gipvP~pi~~~---~G 88 (316) +.|-++| .-|+|+|.+++.++|||.|... ... ..--.|..+|+.|.+.|+|||+||..+ .| T Consensus 39 i~g~a~G-RGttwFv~~~~~~~vLRHY~RGGl~~k~~~D~Y~f~g~~~TRs~~Ef~LL~~L~~~glpVP~PvAa~v~r~g 117 (240) T PRK01723 39 VVGSAKG-RGTTWFVQTEDGNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHG 117 (240) T ss_pred CCCCCCC-CEEEEEEECCCCCEEEECCCCCCCHHHCCCCCEECCCHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHEECC T ss_conf 1103787-605899982897777540324660100134343317756554899999999999879999817777703236 Q ss_pred HHHHHHCCCCEEEEECCCCCC-C------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH Q ss_conf 778752245155786478870-7------689989999999986436753068754332311245645766752001552 Q gi|254780795|r 89 KLYGFLCKKPANIFSFIKGSP-L------NHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE 161 (316) Q Consensus 89 ~~~~~~~~k~~~L~~~i~G~~-~------~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~ 161 (316) -.+ +.-.|.+.|||.. + ...+.+.-.++|+++++||. T Consensus 118 ~~Y-----~Adiite~I~~a~~L~~~L~~~~l~~~~w~~iG~~I~~fH~------------------------------- 161 (240) T PRK01723 118 LFY-----RADILIERIEGARDLVALLQEGPLSEEQWQAIGRLIARFHD------------------------------- 161 (240) T ss_pred EEE-----EHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH------------------------------- T ss_conf 278-----83565635689704899985089988999999999999997------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHC-----CHHHHHHHHHH---CC Q ss_conf 278899999998887652107774440223464225627-9604873162135680001-----98999986431---16 Q gi|254780795|r 162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMY-----DLSICINAWCF---DE 232 (316) Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~-----DLAi~i~~~c~---~~ 232 (316) .|+.|.||+..|||+++ +++. +||||-|......- -|+-..-++-- .. T Consensus 162 ----------------------~gV~H~DLN~~NILid~~~~vw-lIDFDk~~~~~~~~~Wk~~NL~RL~RSl~Ke~~~~ 218 (240) T PRK01723 162 ----------------------AGVYHADLNAHNILLDAGGKFW-LIDFDRGELRTPATRWKQANLARLLRSFNKEQGKR 218 (240) T ss_pred ----------------------CCCCCCCCCHHHEEECCCCCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf ----------------------4897666674416787999889-99886303368864488999999999899875225 Q ss_pred CCCCCHHHHHHHHHHHHHCC Q ss_conf 88878788999998876418 Q gi|254780795|r 233 NNTYNPSRGFSILNGYNKVR 252 (316) Q Consensus 233 ~~~~d~~~~~~~l~gY~~vr 252 (316) .-.+...-++.+++||++.. T Consensus 219 ~~~~~e~~W~~Ll~gY~~a~ 238 (240) T PRK01723 219 PIHFSEQNWQALLAGYQAAW 238 (240) T ss_pred CCCCCHHHHHHHHHHHHHHH T ss_conf 78878889999999999975 No 28 >PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed Probab=99.41 E-value=7.9e-12 Score=96.18 Aligned_cols=131 Identities=24% Similarity=0.351 Sum_probs=85.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99999999998532677555100102677875224515578647887076-89989999999986436753068754332 Q gi|254780795|r 62 LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLN-HISDIHCEEIGSMLASMHQKTKNFHLYRK 140 (316) Q Consensus 62 l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~ 140 (316) .-.|.++|..+.+.|+|||.+..-- .++...+|+|++|..+. ..+.+.++++|+.+|+||. T Consensus 385 t~~EaR~l~r~~~~GV~~P~vy~vD--------~~~~~I~ME~I~G~~lkd~l~~~~~~~iG~~i~~lH~---------- 446 (536) T PRK09605 385 TRAEARLLSEARRAGVPTPIIYDID--------PENKTITMEYIGGKDLKDVISEELCEKVGEMVGKLHS---------- 446 (536) T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEE--------CCCCEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHH---------- T ss_conf 9999999999997699998489997--------7899899999789479999749999999999999973---------- Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCC Q ss_conf 31124564576675200155227889999999888765210777444022346422562796048731621356800019 Q gi|254780795|r 141 NTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYD 220 (316) Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~D 220 (316) .++||||+..+|+++.++++. +|||+-+..+..+=| T Consensus 447 -------------------------------------------~gIiHGDLTTsNiil~~~~i~-lIDFGLs~~s~~~Ed 482 (536) T PRK09605 447 -------------------------------------------AGIVHGDLTTSNIIVRSDRTY-LIDFGLGKYSDLIED 482 (536) T ss_pred -------------------------------------------CCCCCCCCCHHHEEEECCCEE-EEECCCCCCCCCHHH T ss_conf -------------------------------------------997056773240788798899-997998778797576 Q ss_pred HHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 89999864--31168887878899999887641889 Q gi|254780795|r 221 LSICINAW--CFDENNTYNPSRGFSILNGYNKVRKI 254 (316) Q Consensus 221 LAi~i~~~--c~~~~~~~d~~~~~~~l~gY~~vrpL 254 (316) -|+=+.=+ |+....+--.+.+..|++||.+..+- T Consensus 483 kAVDL~VLeral~StH~~~e~l~~~~l~gY~~~~~~ 518 (536) T PRK09605 483 KAVDLHVLKQSLESTYDDFEELIKAFEEGYRKTFPD 518 (536) T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 320099999999844998899999999999986247 No 29 >COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms] Probab=99.36 E-value=2.9e-11 Score=92.50 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=115.4 Q ss_pred ECCCCCEEEEEEEEECCCCEEEEEE-CCCCCHHHHH---------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 0466812001799943995899982-1669988999---------99999999853267755510010267787522451 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKGTFILTIY-EKRMNEKDLP---------VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~~yiLri~-e~~~~~~~l~---------~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) .|..|.+...|...--..+.|+|.= .++.--.+|+ .|..++..+...|+|||.+.-- + .+.. T Consensus 3 ~i~~GAEa~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dv-D-------~~~~ 74 (204) T COG3642 3 LIKQGAEAIIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDV-D-------PDNG 74 (204) T ss_pred HHHCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-C-------CCCC T ss_conf 3437861168863105852589850675557867899999888899999999999769998769997-3-------9987 Q ss_pred EEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 5578647887076----899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 99 ANIFSFIKGSPLN----HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 99 ~~L~~~i~G~~~~----~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) ..+|+|++|..++ ...++.++++|+.+|+||.+ T Consensus 75 ~I~me~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~------------------------------------------- 111 (204) T COG3642 75 LIVMEYIEGELLKDALEEARPDLLREVGRLVGKLHKA------------------------------------------- 111 (204) T ss_pred EEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHC------------------------------------------- T ss_conf 7999985881689998721668999999999988756------------------------------------------- Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 876521077744402234642256279604873162135680001989999864--311688878788999998876418 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAW--CFDENNTYNPSRGFSILNGYNKVR 252 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~--c~~~~~~~d~~~~~~~l~gY~~vr 252 (316) |+||||+..+|+++.++++. +|||+-+-.+--+-|.|+=+.-+ |++....--.+.+.+|++||.+.. T Consensus 112 ----------givHGDLTtsNiIl~~~~i~-~IDfGLg~~s~~~Ed~aVDl~Vleral~sth~~~e~l~~~f~~gY~~~~ 180 (204) T COG3642 112 ----------GIVHGDLTTSNIILSGGRIY-FIDFGLGEFSDEVEDKAVDLHVLERALESTHEKAEELFAAFLEGYREEF 180 (204) T ss_pred ----------CEECCCCCCCEEEEECCCEE-EEECCCCCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf ----------80057886132898389689-9977843245617764011999999987405038999999999999875 Q ss_pred CCCH Q ss_conf 8998 Q gi|254780795|r 253 KISE 256 (316) Q Consensus 253 pLs~ 256 (316) .-.+ T Consensus 181 ~~~~ 184 (204) T COG3642 181 GEAK 184 (204) T ss_pred CCHH T ss_conf 0289 No 30 >PRK09550 mtnK methylthioribose kinase; Reviewed Probab=99.33 E-value=2.1e-09 Score=80.56 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=123.5 Q ss_pred CCCCCCHHHHHHHHHHCCC----CCEEEEEECCCCCEEEEEEEEEC--CCCEEEEE-------E-CCC-CCHHHHHHHHH Q ss_conf 5770899999999984899----86053100466812001799943--99589998-------2-166-99889999999 Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAI----GQLNSVQPIIHGVENSNFVIQTS--KGTFILTI-------Y-EKR-MNEKDLPVFIE 67 (316) Q Consensus 3 Vyt~ls~~el~~il~~y~l----g~~~~~~~i~~G~~Ntny~v~t~--~~~yiLri-------~-e~~-~~~~~l~~~~~ 67 (316) .|-+++.+++...+++.+. ....+++.|..|-.|-.|+|+.. .+..|+|- + |.. .+.+...+|.+ T Consensus 1 ~y~~L~~~~~~~y~~~~~~~~~~~~~~~~~EiGDGNlN~Vf~V~~~~~~~svIvKQAlpyvR~~geswpl~l~R~~~E~~ 80 (398) T PRK09550 1 GYEPLTEETAIEYAKELGLFASKAALWSAEEIGDGNLNLVFRVDDTNTKKSVIVKQALPYVRVVGESWPLTLDRARIEAE 80 (398) T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHH T ss_conf 97437777899999854776687656046896488548999996089983699982660102048878898669999999 Q ss_pred HHHHHHHCCCC--CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99998532677--55510010267787522451557864788707-------6899899999999864367530687543 Q gi|254780795|r 68 LLHYISRNKLP--CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL-------NHISDIHCEEIGSMLASMHQKTKNFHLY 138 (316) Q Consensus 68 ll~~L~~~gip--vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~-------~~~~~~~~~~lG~~La~lH~~~~~f~~~ 138 (316) .|..-++ -.| ||++..-- ....+.+|+.+....+ ...-|.....+|+.+|+.+-.+.++.+. T Consensus 81 ~L~~~~~-~~p~~vP~vy~~D--------~~~~~~vMEdLs~~~ilR~~Li~g~~~p~la~~ig~flA~tlf~tSd~~l~ 151 (398) T PRK09550 81 ALQAQAK-YVPGLVPKVYHHD--------PELAVTVMEDLSDHKILRKGLIAGKKYPKLAEHIGEFLARTLFYTSDLGLS 151 (398) T ss_pred HHHHHHH-HCCCCCCEEEEEC--------CHHHEEHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999986-6888688488886--------168410021075227799898668856438999999999986425533468 Q ss_pred CCCCCCH------HHHHHHHHH------HH----HCCCHHHHH---------HHHHHHHHHHHHHHHCCCCCEEECCCCC Q ss_conf 3231124------564576675------20----015522788---------9999999888765210777444022346 Q gi|254780795|r 139 RKNTLSP------LNLKFLWAK------CF----DKVDEDLKK---------EIDHEFCFLKESWPKNLPTGIIHADLFP 193 (316) Q Consensus 139 r~~~~~~------~~~~~~~~~------~~----~~~~~~~~~---------~l~~~l~~~~~~~~~~Lp~g~IHgDl~~ 193 (316) ....... ..+-.+-+. .. +...+.+.. .+..+...++.... +-+.++||||+|+ T Consensus 152 ~~~kk~~~~~f~N~eLc~ItEdlVFtdPy~d~~~N~~~~~l~~~v~~l~~D~~Lk~~v~~Lk~~F~-t~~eaLlHGDLHt 230 (398) T PRK09550 152 SEEKKALVAQFTNPELCKITEDLVFTDPYFDHERNNIEPELDPDVAELWADKELKLEVARLKHKFL-TKAEALLHGDLHT 230 (398) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH-CCCHHHHCCCCCC T ss_conf 598999887227877887776445256643356677786469999998549999999999999873-3021543577767 Q ss_pred CCEEECCCCCEEEECCCCCCCCHHHCCHHHHH Q ss_conf 42256279604873162135680001989999 Q gi|254780795|r 194 DNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI 225 (316) Q Consensus 194 ~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i 225 (316) ++|+..++++. |||-|++-+||.-|||+..+ T Consensus 231 GSImv~~~~tk-VIDpEFaFyGP~GFDiG~~i 261 (398) T PRK09550 231 GSIFVTEDETK-VIDPEFAFYGPIGFDIGQLI 261 (398) T ss_pred CCEEEECCCEE-EECCCCCCCCCCHHHHHHHH T ss_conf 85787078417-96520103587412099999 No 31 >COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism] Probab=99.33 E-value=8.2e-11 Score=89.61 Aligned_cols=198 Identities=15% Similarity=0.190 Sum_probs=104.4 Q ss_pred EECCCCCEEEEEEEEECCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE-EEEECC Q ss_conf 00466812001799943995-8999821669988999999999998532677555100102677875224515-578647 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSKGT-FILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA-NIFSFI 105 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~~~-yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~-~L~~~i 105 (316) .++. |.+|..|++.-+..+ ++.|.+++... . +...++- |..+.++.+ .+... +-..|. T Consensus 12 ~~~~-g~t~~~~~~~~~g~~~~~~r~~~p~~~--~----------~~~~~~~-~~l~~~~~~------~~~~~~~~q~~~ 71 (269) T COG0510 12 TPLN-GLTGYAFRIEGEGTRVFLKRNFEPFLP--A----------LIFRLIV-PKLLWLKRI------ANGGVLVAQYWE 71 (269) T ss_pred EECC-CCCCEEEEEECCCCEEEEECCCCCCCH--H----------HHHHHHH-HHHHHHHCC------CCCCCEEEEEEC T ss_conf 1134-666704886369974444446687528--9----------9998634-777631012------667624653102 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHH Q ss_conf 8870768998999999998643675---3068754332311245645766752001552--2788999999988876521 Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQ---KTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE--DLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~---~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~ 180 (316) .|+..... ......+...|+++|. ....++..... ...+..+.+.+...... .....+...+..+....++ T Consensus 72 ~~~~l~~~-~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 147 (269) T COG0510 72 NGRTLTPE-DMNLKKIAHILKKLHNSVPLLHQLPRSGSS---FIEPKDYLELLWQQNSRAYRDNHLLRKKLKELRRALEE 147 (269) T ss_pred CCCCCCCC-CCCCHHHHHHHHHHHCCCCCHHHHHHCCCH---HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 56114801-002188999999984554208888760646---65099999999961768775049999999999973410 Q ss_pred -CCC-CCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH Q ss_conf -077-74440223464225627-96048731621356800019899998643116888787889999988764188998 Q gi|254780795|r 181 -NLP-TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE 256 (316) Q Consensus 181 -~Lp-~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~ 256 (316) ..+ ..+||+|++++|.|..+ +++. +||||+||.+..++|||-.+.-+.++.. ........|-+..+... T Consensus 148 ~~~~~~v~cH~Dl~~~N~l~t~~~~l~-LIDWEyAg~~D~~~DLA~~~~e~~~~~~------~~~~~~~~~~~~~~~~~ 219 (269) T COG0510 148 VPKDDLVPCHNDLNPGNLLLTDKGGLF-LIDWEYAGLNDPAFDLAALLSEYIFNHN------ELEDLYSAYLEKYGFEA 219 (269) T ss_pred CCCCCEEEECCCCCCCCEEECCCCCEE-EEECCCCCCCCHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHCCCHH T ss_conf 276751444578984505785899689-9961457776589999999998564646------79999999986278428 No 32 >PRK12396 5-methylribose kinase; Reviewed Probab=99.26 E-value=3.5e-10 Score=85.52 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=125.1 Q ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEEECCCCCEEEEEEEEECCC--CEEEE-------EECC-CCCHHHHHHHH Q ss_conf 9657708999999999848----998605310046681200179994399--58999-------8216-69988999999 Q gi|254780795|r 1 MAVYTHPPQKEIQSFVQEY----AIGQLNSVQPIIHGVENSNFVIQTSKG--TFILT-------IYEK-RMNEKDLPVFI 66 (316) Q Consensus 1 MaVyt~ls~~el~~il~~y----~lg~~~~~~~i~~G~~Ntny~v~t~~~--~yiLr-------i~e~-~~~~~~l~~~~ 66 (316) |+-|-.++.+++-..+++. +.....+++.|..|-.|-.|+|...++ ..|+| +.+. ..+.+...+|. T Consensus 4 ~~~y~~l~~~~~i~Y~k~~~~~f~~~~~l~~~EIGDGNLN~Vf~V~~~~~~~svivKQAlpyvRv~~~wpL~~~R~~~E~ 83 (409) T PRK12396 4 FTKYFLMEANDVIVYVKEKLCKFEHAKGLQCKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIES 83 (409) T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCEEECCCCCCCHHHHHHHH T ss_conf 35411076736999999826879998885368974785689999970898717999816760366689888866899999 Q ss_pred HHHHHHHHCCCC--CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999998532677--55510010267787522451557864788707-------689989999999986436753068754 Q gi|254780795|r 67 ELLHYISRNKLP--CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL-------NHISDIHCEEIGSMLASMHQKTKNFHL 137 (316) Q Consensus 67 ~ll~~L~~~gip--vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~-------~~~~~~~~~~lG~~La~lH~~~~~f~~ 137 (316) +.|...++. .| ||++..--. ...+.+|+.+....+ ...-|.....+|+.||+-+-.+.++.+ T Consensus 84 ~aL~~~~~~-~P~~vP~vy~~D~--------~~~~~vMEdLs~~~ilR~~Li~g~~~p~la~~ig~flA~Tlf~tSd~~l 154 (409) T PRK12396 84 DVLQLEEEL-APGLVPKVYLFDS--------VMNCCVMEDLSDHTILRTALINHEIFPRLADDLTTFLVNTLLLTSDVVM 154 (409) T ss_pred HHHHHHHHH-CCCCCCEEEEECH--------HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 999998856-8876774887661--------7866757754402559999877886730899999999998851253336 Q ss_pred CCCCCCCHH--HHHHHHHHH----------HHC-----CCHH----HHH------HHHHHHHHHHHHHHHCCCCCEEECC Q ss_conf 332311245--645766752----------001-----5522----788------9999999888765210777444022 Q gi|254780795|r 138 YRKNTLSPL--NLKFLWAKC----------FDK-----VDED----LKK------EIDHEFCFLKESWPKNLPTGIIHAD 190 (316) Q Consensus 138 ~r~~~~~~~--~~~~~~~~~----------~~~-----~~~~----~~~------~l~~~l~~~~~~~~~~Lp~g~IHgD 190 (316) ......... .....+.++ .+. ..+. ..+ .+..+...++...- +-+.++|||| T Consensus 155 ~~~~kK~~v~~f~N~eLc~ITEdlVFTdPy~~~~~~n~~~~~~~~~v~~~l~~D~~Lk~eva~LK~~Fm-t~aeaLlHGD 233 (409) T PRK12396 155 NHKEKKELVKNYINPELCEITEDLVYAEPFTNHNKRNELFPLNEGWIREHIYSDKELRIEVAKLKFSFM-TNAQALIHGD 233 (409) T ss_pred CHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH-HCCHHHHCCC T ss_conf 879999998853996776545653637776454447788854649999998509999999999999875-2002443267 Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH Q ss_conf 34642256279604873162135680001989999 Q gi|254780795|r 191 LFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI 225 (316) Q Consensus 191 l~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i 225 (316) ||.++|++.+++.. |||-|++-|||.-|||+..+ T Consensus 234 LHTGSImv~~~~tk-VIDpEFAFYGPmGFDiG~~i 267 (409) T PRK12396 234 LHTGSVFVKNDSTK-VIDPEFAFYGPMGYDIGNVM 267 (409) T ss_pred CCCCCEEEECCCCE-EECCHHHCCCCCHHHHHHHH T ss_conf 55675686078415-87620321687410099999 No 33 >TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. Probab=99.24 E-value=2.7e-10 Score=86.24 Aligned_cols=208 Identities=18% Similarity=0.245 Sum_probs=133.7 Q ss_pred CCCCCEEEEEEEEECCCC-EEEEEECC-CC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC--CCEEEEEC Q ss_conf 466812001799943995-89998216-69-988999999999998532677555100102677875224--51557864 Q gi|254780795|r 30 IIHGVENSNFVIQTSKGT-FILTIYEK-RM-NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK--KPANIFSF 104 (316) Q Consensus 30 i~~G~~Ntny~v~t~~~~-yiLri~e~-~~-~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~--k~~~L~~~ 104 (316) ..+|-.-.||. ..+++ ++||++.. +. +.+++-.+...-++..+=|||+|.|+. +.+.++ |...++|. T Consensus 9 ~GEG~~~~~Y~--hk~~~~~~lKL~~P~~~s~~~~~~~E~~~sr~~~~LGipTP~~~~------lV~~g~sGR~G~~YE~ 80 (234) T TIGR02172 9 TGEGANGESYT--HKTGKDILLKLYNPGECSDKETIKREFDASRKVFSLGIPTPKPID------LVEDGDSGRLGLIYEL 80 (234) T ss_pred HCCCCCCCCCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCEE------EEEECCCCCCCEEEEE T ss_conf 14773214531--788863254417689988889999998862104531688885347------7876687641117888 Q ss_pred CCCC-CCC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH Q ss_conf 7887-076---8998999999998643675306875433231124564576675200---15522788999999988876 Q gi|254780795|r 105 IKGS-PLN---HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD---KVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 105 i~G~-~~~---~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~ 177 (316) |.|+ ++. .-+|+++.++.+.+|++-+.+-+.+- +.-.....++.+.+..+ ......++.+.+.++ . T Consensus 81 I~gKrSfSRiis~~P~~L~E~~k~fAe~akkLH~~~c---dt~~f~s~ke~~~~~i~ek~fvp~~~k~~~~a~i~----~ 153 (234) T TIGR02172 81 IKGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKC---DTSKFQSYKEKIRKFIEEKDFVPDDYKEKARAFIE----E 153 (234) T ss_pred EECCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH----H T ss_conf 7175444233158832278999999987687468668---98766457899875103321573368999999986----2 Q ss_pred HHHCCCCCEEECCCCCCCEEECCCC--CEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 5210777444022346422562796--04873162135680001989999864311688878788999998876418899 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNK--IMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKIS 255 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~--i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs 255 (316) .|+. .+=+|||+.++|++.++++ -. .||.++=++|.+.||||.. |.+- ..++.++ +=+.+..++ T Consensus 154 vPd~--~tCLHGD~Q~GN~I~~g~~G~~y-WIDlG~FgyG~P~fDlg~~---f~~~--~~~~~~k------~~~~~FHM~ 219 (234) T TIGR02172 154 VPDT--KTCLHGDLQIGNLITSGKGGKTY-WIDLGDFGYGSPLFDLGLL---FMFC--NVLDDDK------ALQAIFHMN 219 (234) T ss_pred CCCC--CCCEECCCCCCCEEEECCCCCCC-EEECCCCCCCCHHHHHHHH---HHHH--CCCCCCH------HHHHHHCCC T ss_conf 6898--88310123544168828988411-4565775779766899999---9985--5687223------579985167 Q ss_pred HHHHHH-HHHHH Q ss_conf 899999-99999 Q gi|254780795|r 256 ENELQS-LPTLL 266 (316) Q Consensus 256 ~~E~~~-l~~ll 266 (316) .+.++. |..+. T Consensus 220 ~~~l~~~Wn~F~ 231 (234) T TIGR02172 220 EEQLKAHWNIFA 231 (234) T ss_pred HHHHHHHHHHHH T ss_conf 889888877763 No 34 >COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis] Probab=99.23 E-value=3.8e-10 Score=85.31 Aligned_cols=218 Identities=15% Similarity=0.101 Sum_probs=135.3 Q ss_pred EEEEEEECCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC-- Q ss_conf 01799943995-899982166998899999999999853267755510010267787522451557864788707689-- Q gi|254780795|r 37 SNFVIQTSKGT-FILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHI-- 113 (316) Q Consensus 37 tny~v~t~~~~-yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~-- 113 (316) +.|++..+++. +.+|+- ......+|+-|.+-+.+|+.++++||.++.-. ..++..+.+++-++|.....+ T Consensus 34 ~v~rl~a~~r~g~~~k~~-~~~~~a~L~~Ea~RlrWla~~~l~~P~V~~~~------~~~~~~wLl~salpG~~~s~~~~ 106 (266) T COG3231 34 GVFRLFADSRPGLYLKIA-SSGPAAELEGEAARLRWLAGQGLGCPRVLGLE------DDADQAWLLMSALPGEDASHPRY 106 (266) T ss_pred EEEEEECCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEC------CCCCHHHHHHHHCCCCCCCCHHH T ss_conf 578975067871699972-37624445648999877511379997257631------57646577664058976436131 Q ss_pred --CH-HHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHH---CCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf --98-99999999864367530-6875433231124564576675-200---1552278899999998887652107774 Q gi|254780795|r 114 --SD-IHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFD---KVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316) Q Consensus 114 --~~-~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316) ++ ..+..+++.|-.||... ..-|..+.-...+.......+. ..+ ..++..-....+.+..+....|..-.-. T Consensus 107 ~~~p~r~v~~la~aLR~LH~l~~~aCPFd~rl~~rl~~a~~r~~a~~vdesdfd~e~qgr~~~El~d~L~~~rp~~edLV 186 (266) T COG3231 107 ALDPKRAVPLLAEALRRLHELPVEACPFDRRLARRLAKARARVRAGLVDESDFDEERQGRTAEELFDELEARRPAVEDLV 186 (266) T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHCCCCHHHCE T ss_conf 07999999999999999842982008951489999999999875157884442744328877999999985188412115 Q ss_pred EEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 44022346422562796048731621356800019899998643116888787889999988764188998999999999 Q gi|254780795|r 186 IIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTL 265 (316) Q Consensus 186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~l 265 (316) +||||.=.-|++.++++.+|+||++-.+.+.+-.|||.+.-+ ...+-. -......|++.|.. ...+.++..++.+ T Consensus 187 v~HGDACLPN~i~d~~rf~GfIDlGrlGVaDRh~DLala~~s--~~~nl~-g~~~~~~fl~~Yg~--~~~d~~rl~~yr~ 261 (266) T COG3231 187 VTHGDACLPNFILDGWRFSGFIDLGRLGVADRHQDLALATWS--LRFNLG-GDVWDDPFLDAYGR--GAIDPARLAYYRL 261 (266) T ss_pred EECCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHHCCC-CCHHHHHHHHHHCC--CCCCHHHHHHHHH T ss_conf 631764576567528715776651765514777868999999--875058-20666799997386--7898788999999 Q ss_pred H Q ss_conf 9 Q gi|254780795|r 266 L 266 (316) Q Consensus 266 l 266 (316) | T Consensus 262 l 262 (266) T COG3231 262 L 262 (266) T ss_pred H T ss_conf 8 No 35 >COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only] Probab=99.22 E-value=1.4e-09 Score=81.69 Aligned_cols=216 Identities=15% Similarity=0.190 Sum_probs=128.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 98899999999999853267755510010--2677875224515578647887076899899999999864367530687 Q gi|254780795|r 58 NEKDLPVFIELLHYISRNKLPCPIPIPRN--DGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNF 135 (316) Q Consensus 58 ~~~~l~~~~~ll~~L~~~gipvP~pi~~~--~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f 135 (316) ..+++.-++.+-..|...|+.||+++..- .|-.+.+-=|....+.. ...+-.+.....+..++.+|..+-.+ T Consensus 63 ~ae~v~~Fvai~~lL~~~Gv~vPqIla~Dld~GfllLedLG~e~~l~~------~g~~~~ery~~a~~ll~~~h~~~~~~ 136 (351) T COG3178 63 LAEDVRPFVAIAGLLAGQGVRVPQILAADLDQGFLLLEDLGRETFLQA------LGEPIAERYAAADALLAAAHGALVPL 136 (351) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHCCCHHHHHCCCHHHHHH------CCCCCHHHHHHHHHHHHHHHCCCCHH T ss_conf 176564899999998617867517764064227316864371777876------08970467887999999985684244 Q ss_pred CCC-CCC-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEE Q ss_conf 543-323-----------------11245645766752001552278899999998887652107774440223464225 Q gi|254780795|r 136 HLY-RKN-----------------TLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVL 197 (316) Q Consensus 136 ~~~-r~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL 197 (316) +.. ++. ++-+.|... .+.--.++....+........+.... ..-|+.++|-|+|+-|++ T Consensus 137 q~~~~~g~~~~lp~fDr~am~~E~sLf~dWylp--r~~g~~l~~~~r~~~~aiwd~Lid~~-~~~~~vlvhRDfh~~NLm 213 (351) T COG3178 137 QKAVREGSTHVLPPFDRAAMRREASLFVDWYLP--RHLGRPLTDAERQAWEAIWDGLIDSL-LAQPKVLVHRDFHSRNLM 213 (351) T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCEEEECCCCCCCCE T ss_conf 404678987768862689999998765775339--87189888799999999999998887-428705644134675423 Q ss_pred ECCC-----CCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHH Q ss_conf 6279-----6048731621356800019899998643116888787889999988764188998---9999999999999 Q gi|254780795|r 198 FYNN-----KIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE---NELQSLPTLLRGA 269 (316) Q Consensus 198 ~~~~-----~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~---~E~~~l~~ll~~a 269 (316) |..+ ++ |||||-||.+||..||+|-. ..+..-++.+++....+..|.+.|+... +|-+-+-.+--|+ T Consensus 214 w~~~~~g~~rv-GvlDFQDA~iGP~aYDvasL----~~DArvt~~pe~~~~~l~rY~~~r~~~g~p~d~~~Flra~~~Mg 288 (351) T COG3178 214 WTADRAGADRV-GVLDFQDALIGPIAYDVASL----LRDARVTWSPERELALLDRYWAARRAAGLPFDEAAFLRAYAWMG 288 (351) T ss_pred ECCCCCCCCCC-CEEEHHHHHCCCCHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 34776678887-65532444238511339999----76240147989999999999986041289967899999999988 Q ss_pred HHHHH-HHHHHHHHHCCCH Q ss_conf 99999-9999987608851 Q gi|254780795|r 270 ALRFF-LTRLYDSQNMPCN 287 (316) Q Consensus 270 alRf~-lsrl~d~~~~~~~ 287 (316) |.|-. +.-++.....++| T Consensus 289 aQR~~KvlGIFaRL~~RDG 307 (351) T COG3178 289 AQRHLKVLGIFARLYYRDG 307 (351) T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 8887678777555232168 No 36 >pfam07914 DUF1679 Protein of unknown function (DUF1679). The region featured in this family is found in a number of C. elegans proteins, in one case as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in ZnF_C4 and HLH domain-containing kinases. In fact, one member of this family is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (Interpro:IPR000536, Interpro:IPR008946, and Interpro:IPR001628). Probab=99.20 E-value=9.8e-10 Score=82.62 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=138.4 Q ss_pred CCCCHHHHHHHHHH-CC----CCCEEEEEECCCC--CEEEEEEEEE-----CC-----CCEEEEEEC------------- Q ss_conf 70899999999984-89----9860531004668--1200179994-----39-----958999821------------- Q gi|254780795|r 5 THPPQKEIQSFVQE-YA----IGQLNSVQPIIHG--VENSNFVIQT-----SK-----GTFILTIYE------------- 54 (316) Q Consensus 5 t~ls~~el~~il~~-y~----lg~~~~~~~i~~G--~~Ntny~v~t-----~~-----~~yiLri~e------------- 54 (316) |+|+-++++..++. .| +|+-..+..|+.| ..-..-+|+. .. .||+|||.- T Consensus 11 THVtweDVe~~iq~~~~T~ak~G~n~k~~nI~D~~GFmSrI~lVe~dW~~~~~~~~LP~kf~lKIsS~l~~~~l~~~~~~ 90 (413) T pfam07914 11 THVTWEDVEKAIQEQLGTEAKFGENKKATNIGDGKGFMSRIALVEPDWTNVEPSKNLPKKFALKISSQLALVALSKKMKF 90 (413) T ss_pred CEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHC T ss_conf 50459999999999848876216884366653673544503686048603787766874179985035779999999741 Q ss_pred ---CCCCHHH-HHHHHH--------------HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC----CC Q ss_conf ---6699889-999999--------------9999853267755510010267787522451557864788707----68 Q gi|254780795|r 55 ---KRMNEKD-LPVFIE--------------LLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL----NH 112 (316) Q Consensus 55 ---~~~~~~~-l~~~~~--------------ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~----~~ 112 (316) .....+. +..+.. ++.......+|.|++...+.=. ..-.-|.+.+++|+|+-+. .. T Consensus 91 ~~~~~~~~e~~~~~f~~~~~~~HNrEVn~Ykil~k~n~~~i~~pKVY~~kkfd--~en~~KG~IimE~v~ni~~~~~y~n 168 (413) T pfam07914 91 EGGNGFTEEKELKHFESSTRELHNREVNFYKILEKFNHPDIPYTKVYFLKKFD--DENDLKGYIIMEYVPNIHTRHMYEN 168 (413) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC--CCCCCCCEEEEEECCCCEEEECCCC T ss_conf 37788876899999999878765479999999997068789874012302456--5677777788882488468725489 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHH-------------HHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 998999999998643675306875433231-12456457667-------------5200155227889999999888765 Q gi|254780795|r 113 ISDIHCEEIGSMLASMHQKTKNFHLYRKNT-LSPLNLKFLWA-------------KCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 113 ~~~~~~~~lG~~La~lH~~~~~f~~~r~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) .+++++..+=+.+|+++..+...+-..... .+.......+. ...........+.+.+....+.... T Consensus 169 i~~deL~~vv~~iA~fqA~~~~LseEE~k~i~g~df~~~~~~~~~~~~~~~~~f~~lr~~~g~~~~ekv~e~~~~~~~y~ 248 (413) T pfam07914 169 IPADELIPVLRAIATFQALGESLSEEEKKSANGADFLEQMFETFMSEEGLKGIFDQLRNIFGAEYPEKVEELVDIFEHYG 248 (413) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC T ss_conf 89899999999999999864349989975356757999999987236779999999975411123899987789998737 Q ss_pred ------------HH--CCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHH Q ss_conf ------------21--077744402234642256279-----60487316213568000198999986431168887878 Q gi|254780795|r 179 ------------PK--NLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPS 239 (316) Q Consensus 179 ------------~~--~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~ 239 (316) .+ ..+.-+||||++..|+||+.+ ++.+||||--+..+++..||+-.+.. |....+ -.+ T Consensus 249 ~~~~~~~k~~ni~~~lG~k~Vl~HgDlw~~NiL~~~~~~g~~~~~aiID~Q~~~~g~p~~Dl~rl~~~-~ls~~d--R~~ 325 (413) T pfam07914 249 PEILIFKKYTNLSKVLGIKPVLVHGDLWQSNILWSLDNDGKLKLKAIIDYQTVHMGNPAEDLVRLLLS-CLSGAD--RRA 325 (413) T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCEEHHEEEHHHHCCCCHHHHHHHHHHH-CCCHHH--HHH T ss_conf 23445898874787518754410475157650121377876000111110120568848889999983-598888--998 Q ss_pred HHHHHHHHHHH---------CCCCCHHHHHHHH Q ss_conf 89999988764---------1889989999999 Q gi|254780795|r 240 RGFSILNGYNK---------VRKISENELQSLP 263 (316) Q Consensus 240 ~~~~~l~gY~~---------vrpLs~~E~~~l~ 263 (316) +...+|+-|.. .-|.|-+|++-=+ T Consensus 326 ~~~~lL~~y~~~f~~~l~~~~~p~t~eqL~~sY 358 (413) T pfam07914 326 RWEELLEQYYETFTKVLGDNEEPYTLEQLKDSY 358 (413) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 799999999999998748888986899999999 No 37 >PRK10271 thiK thiamine kinase; Provisional Probab=99.19 E-value=2.8e-10 Score=86.14 Aligned_cols=139 Identities=17% Similarity=0.311 Sum_probs=90.5 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH Q ss_conf 786478870768998999999998643675306-8754332311245645766752001-55227889999999888765 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTK-NFHLYRKNTLSPLNLKFLWAKCFDK-VDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~-~f~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~ 178 (316) +++|++|+......+. -+++..++++|+... ++++.-+ ......+..+.++ .++...+.... +..... T Consensus 2 ~Vewl~Gev~~~~~~~--~~La~Lla~LHq~P~~g~rL~L~-----~~l~~YWq~id~~r~sp~wlrl~~~---f~~~~~ 71 (188) T PRK10271 2 AVDYLPGEVKSALPDT--NELAGLLYHLHQQPRFGWRITLL-----PLLELYWQQSDPARRTPFWLRMLKR---LRKAGE 71 (188) T ss_pred CEEECCCHHHCCCCCH--HHHHHHHHHHHCCCCCCCCCCCH-----HHHHHHHHHCCHHHCCHHHHHHHHH---HHHCCC T ss_conf 4020366243158972--68999999983589988876619-----9999999858964259999999999---985889 Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHH Q ss_conf 21077744402234642256279604873162135680001989999864311688878788999998876418899899 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENE 258 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E 258 (316) |..++-++||-|+|++|++..++.+ .+||||+|+.+...+|||..+ .. +......++.-|...+.+.... T Consensus 72 p~~lkla~~H~D~~~~Nli~~~~g~-~liDWEYAa~~d~~l~la~~~---~~------n~~~~~~~v~~Yc~~~~~d~~~ 141 (188) T PRK10271 72 PRPLRLAPLHMDVHAGNLVHSASGL-RLIDWEYAGDGDIALELAAVW---VE------NEEQHRQLVNDYATRAKIDPAQ 141 (188) T ss_pred CCCCCCCCCCCCCCCCCEEECCCCC-EEEEECCCCCCCHHHHHHHHH---HH------CCHHHHHHHHHHHHHCCCCHHH T ss_conf 9852322000025654145517874-687541124567688999999---72------7478999999999870598789 Q ss_pred H Q ss_conf 9 Q gi|254780795|r 259 L 259 (316) Q Consensus 259 ~ 259 (316) . T Consensus 142 l 142 (188) T PRK10271 142 L 142 (188) T ss_pred H T ss_conf 9 No 38 >KOG3021 consensus Probab=99.17 E-value=9.1e-09 Score=76.38 Aligned_cols=224 Identities=20% Similarity=0.203 Sum_probs=127.3 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHH Q ss_conf 9984899860531004668120017999439958999821669988999999999998532-677555100102677875 Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIPIPRNDGKLYGF 93 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~pi~~~~G~~~~~ 93 (316) +.++-++..+..+....+|..+..-.-.|+.|++++|+-++ ..++...=++.-|+.+.++ -+.||+|++-.+ . T Consensus 5 l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr~-~~~~mfeGE~~sLeAi~sT~tv~vprpikvid-----~ 78 (313) T KOG3021 5 LRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNRS-IARDMFEGELASLEAIQSTETVLVPRPIKVID-----L 78 (313) T ss_pred HHHHCCCCEEEEECCCCCCEECCCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHHCCCEECCCCEEEEE-----C T ss_conf 98760833056504788753214544556776279986630-12688765788899998548430577514576-----5 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH---------------CCC-----------CC---------CC Q ss_conf 22451557864788707689989999999986436753---------------068-----------75---------43 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQK---------------TKN-----------FH---------LY 138 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~---------------~~~-----------f~---------~~ 138 (316) -.|-.+.++++++=.+ ...+...+|..||+||.- .++ |- .+ T Consensus 79 p~Ggs~lime~idf~~----lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge~~e~~~v~~FGF~v~tccG~lp 154 (313) T KOG3021 79 PGGGSSLIMEHIDFQG----LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGEEGEQIGVENFGFHVVTCCGRLP 154 (313) T ss_pred CCCCEEEEEEHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCEEEEEECCCCC T ss_conf 8996143011100145----104799998999998654688999988751554568655665420015526652015676 Q ss_pred CCCCCCHHHHHHHHHHH-HHCCCHHHH----HHHHHHHHHHHHHHH---HC---CCCCEEECCCCCCCEEECCCCCEEEE Q ss_conf 32311245645766752-001552278----899999998887652---10---77744402234642256279604873 Q gi|254780795|r 139 RKNTLSPLNLKFLWAKC-FDKVDEDLK----KEIDHEFCFLKESWP---KN---LPTGIIHADLFPDNVLFYNNKIMGLI 207 (316) Q Consensus 139 r~~~~~~~~~~~~~~~~-~~~~~~~~~----~~l~~~l~~~~~~~~---~~---Lp~g~IHgDl~~~NiL~~~~~i~giI 207 (316) ..|.|.-.|.....++. .+.++-... +++.+.-..+..+.+ ++ +|. +.|||++.+||--++..-.-|. T Consensus 155 QvNdW~edW~eFf~rhRlq~Qldl~~~~~~Dre~~el~~~L~~kia~Lf~~~eI~Pa-LlHGDLW~GNva~D~~~ePiIf 233 (313) T KOG3021 155 QVNDWQEDWEEFFARHRLQPQLDLLEKTYGDREAFELWSILQTKIADLFKCLEILPA-LLHGDLWSGNVAEDGAGEPIIF 233 (313) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEHH-HHCCCCCCCCCCCCCCCCCEEE T ss_conf 546404569999998753278889988625399999999999863787546444232-4316633675344679996576 Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCH-HHHH Q ss_conf 1621356800019899998643116888787889999988764188998-9999 Q gi|254780795|r 208 DFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISE-NELQ 260 (316) Q Consensus 208 DF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~-~E~~ 260 (316) |= -+.|+..-||+||+ ||+ |.| .+.|..+|+++-|-.+ .|.. T Consensus 234 DP-asfYgh~Efefgia---~mf---Ggf----~~sF~naY~k~ipka~G~eqR 276 (313) T KOG3021 234 DP-ASFYGHSEFEFGIA---KMF---GGF----TQSFYNAYHKKIPKAPGFEQR 276 (313) T ss_pred CC-HHHCCCCHHHHHHH---HHH---CCC----CHHHHHHHHHHCCCCCCHHHH T ss_conf 75-33038737888999---986---777----387899886316788867888 No 39 >TIGR02905 spore_yutH spore coat protein YutH; InterPro: IPR014254 This entry, represented by the Bacillus subtilis protein YutH, is found only in the family Bacillaceae, part of the endospore-forming group within the Firmicutes. YutH has been shown to be involved in spore coat assmebly . Proteins in this entry are homologous to CotS (IPR014255 from INTERPRO).. Probab=99.17 E-value=6.4e-10 Score=83.81 Aligned_cols=236 Identities=14% Similarity=0.192 Sum_probs=153.6 Q ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH Q ss_conf 439958999821669988999999999998532677-5551001026778752245155786478870768998999999 Q gi|254780795|r 43 TSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEI 121 (316) Q Consensus 43 t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~l 121 (316) +++..|++ +=.+....+++.....+-+||.++|.+ |...|+|++|+....++|++++|+.--+-..-.......-.++ T Consensus 26 ~~nq~yl~-vP~~~~~~~E~aE~~~m~~yLq~~GD~~V~~l~~t~~G~~~a~~~G~~~~l~~~P~~~~r~g~r~Q~~~~~ 104 (325) T TIGR02905 26 AQNQLYLL-VPVDGLEEEELAELLEMSEYLQQAGDETVSELVKTKEGKLSAKIDGQSYYLLKAPEEAERRGVRLQSDEDL 104 (325) T ss_pred CCCCCEEE-CCHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCEEECCHHH T ss_conf 48872410-46331898899999999999985257402520025788447877381179987886111361143050766 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH-----------------------HHHHHHHHHHHHH Q ss_conf 99864367530687543323112456457667520015522788-----------------------9999999888765 Q gi|254780795|r 122 GSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKK-----------------------EIDHEFCFLKESW 178 (316) Q Consensus 122 G~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~l~~~~~~~ 178 (316) |+.||++|..++.++........+..|+.+|.|-.+.+..-..+ +-+|.+..+.... T Consensus 105 Gr~LA~fH~~Gr~~~~~~~~~~riGqW~eLW~KRLdQlE~~w~~~l~qgP~~~~D~~FletFPYYlGltENAIQy~aDte 184 (325) T TIGR02905 105 GRELATFHKRGRQYPSPIVKKSRIGQWKELWEKRLDQLEEFWQSLLAQGPETLFDRQFLETFPYYLGLTENAIQYLADTE 184 (325) T ss_pred HHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 68999998601678623312158887776798889999999999962477443567775226602124788999998633 Q ss_pred HHCCCC-----CEEECCCCCCCEEE---CCCCCEEEECCCCCCCCHHHCCHHHHHHH-HHHCCCCCCCHH--HHHHHHHH Q ss_conf 210777-----44402234642256---27960487316213568000198999986-431168887878--89999988 Q gi|254780795|r 179 PKNLPT-----GIIHADLFPDNVLF---YNNKIMGLIDFYFSCNDFLMYDLSICINA-WCFDENNTYNPS--RGFSILNG 247 (316) Q Consensus 179 ~~~Lp~-----g~IHgDl~~~NiL~---~~~~i~giIDF~~~~~~~~i~DLAi~i~~-~c~~~~~~~d~~--~~~~~l~g 247 (316) .++-|. ++||-=|..+.-+. +++.|.-=.|| .+|..+=|||==+-. .-+. ...-+.. ....|+.+ T Consensus 185 lD~~p~~~D~gTiCH~Rf~~~~W~~ms~~~~~~K~P~~w---VyDH~aRDLAEW~R~n~~~~-~~r~~~~al~i~~Fl~~ 260 (325) T TIGR02905 185 LDEEPGEADSGTICHERFTEETWLRMSERGGLIKVPTEW---VYDHAARDLAEWVRENRYLK-EIRKNQRALAIASFLQE 260 (325) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHEEECCCCCEECCCHHH---HCCCCCHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHC T ss_conf 146887656764244435421002210478751267032---23673045799874002344-41143048899999840 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHH Q ss_conf 76418899899999999999999999---999999876088512 Q gi|254780795|r 248 YNKVRKISENELQSLPTLLRGAALRF---FLTRLYDSQNMPCNA 288 (316) Q Consensus 248 Y~~vrpLs~~E~~~l~~ll~~aalRf---~lsrl~d~~~~~~~~ 288 (316) |+++.|||+-=...++.=| =| ..-.+.+||..+... T Consensus 261 Ye~~~PLt~f~wRl~YARL-----LFPLHYFE~iE~YY~~~~E~ 299 (325) T TIGR02905 261 YEQAAPLTSFSWRLMYARL-----LFPLHYFETIENYYIAQLES 299 (325) T ss_pred CCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHHHCCCCCHH T ss_conf 1223766457899999885-----03111567665211688706 No 40 >pfam02958 DUF227 Domain of unknown function (DUF227). This family includes a large number of drosophila proteins of unknown function. The family also includes several C. elegans proteins. The alignment contains many histidines and aspartates that are conserved, suggesting a metal binding and possibly a phosphoesterase function (A Bateman pers. obs.). Probab=99.06 E-value=2.5e-09 Score=80.06 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=80.2 Q ss_pred CEEEEECC------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-------------CC--CCCHHHHHHHHHHHH Q ss_conf 15578647------8870768998999999998643675306875433-------------23--112456457667520 Q gi|254780795|r 98 PANIFSFI------KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYR-------------KN--TLSPLNLKFLWAKCF 156 (316) Q Consensus 98 ~~~L~~~i------~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r-------------~~--~~~~~~~~~~~~~~~ 156 (316) .+.|++=+ .|......+.+++..+-+.||+||.++-.+.... .. .....++...+.... T Consensus 91 ~vlVLEDL~~~Gf~~~d~~~gl~~~~~~~~l~~LA~lHA~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (293) T pfam02958 91 QVIILEDLSEKGYKNADRLKGLDLEHTKLVLKKLAQFHAASAALKELQPEFFKQLKKGPFEEDYVNGAKEEFEPLMETGL 170 (293) T ss_pred CEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 48998141642984354467999999999999999998999999986851166741242342110010489999999999 Q ss_pred --------HCCC--HHHHHHHHH----HHHHHHHHH-HH-CCCCCEEECCCCCCCEEECC---C---CCEEEECCCCCCC Q ss_conf --------0155--227889999----999888765-21-07774440223464225627---9---6048731621356 Q gi|254780795|r 157 --------DKVD--EDLKKEIDH----EFCFLKESW-PK-NLPTGIIHADLFPDNVLFYN---N---KIMGLIDFYFSCN 214 (316) Q Consensus 157 --------~~~~--~~~~~~l~~----~l~~~~~~~-~~-~Lp~g~IHgDl~~~NiL~~~---~---~i~giIDF~~~~~ 214 (316) .... ....+.+.. ....+.... +. .-...+||||++.+|+||.. + .+ .+|||-.+++ T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~HGD~w~nN~mf~~d~~g~~~~~-~lvDfQ~~~~ 249 (293) T pfam02958 171 DAAAEALREQIPEYEKYAEKLEKLIDNYFDRLLRLVDPNPDEFNVLNHGDLWVNNIMFKYDEEGEPEDV-ILVDFQLSRY 249 (293) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHEEEEECCCCCEEEE-EEEECCCCCC T ss_conf 999999986473517899999999999999999983778778659884654643064642799986318-9993785781 Q ss_pred CHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC Q ss_conf 8000198999986431168887878899999887641 Q gi|254780795|r 215 DFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKV 251 (316) Q Consensus 215 ~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~v 251 (316) ++.+.||+..+.. |...+ .-......+|+-|++. T Consensus 250 g~p~~Dl~yfL~~-s~~~e--~R~~~~~~ll~~Y~~~ 283 (293) T pfam02958 250 GSPALDLLYFLYT-STSPE--LRLEHFDELLRYYHES 283 (293) T ss_pred CCHHHHHHHHHHH-CCCHH--HHHHHHHHHHHHHHHH T ss_conf 8809999999997-89999--9999999999999999 No 41 >smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases Probab=99.04 E-value=8.6e-10 Score=82.99 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=77.5 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------------CCHHHHHHHHHH----HHHCC----CHH Q ss_conf 8870768998999999998643675306875433231---------------124564576675----20015----522 Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNT---------------LSPLNLKFLWAK----CFDKV----DED 162 (316) Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~---------------~~~~~~~~~~~~----~~~~~----~~~ 162 (316) .|......+.+++..+-+.||+||.++-.+....+.. .....+...... ..... ... T Consensus 13 ~~~~~~~~~~~~~~~~l~~LA~~HA~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (196) T smart00587 13 NADRLKGLDLEHTSLVLKKLAKLHAASAVLIEEEKGSYLEEFDEGLFERFKRMFSEEFIGGLENFLRELLSQPELLKVEE 92 (196) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 37757898999999999999999656899987547666888532211246366899999999999999985412255699 Q ss_pred HHHHHHHHHHHHHHH-----HHH-CCCCCEEECCCCCCCEEECCC---C--CEEEECCCCCCCCHHHCCHHHHHHHHHHC Q ss_conf 788999999988876-----521-077744402234642256279---6--04873162135680001989999864311 Q gi|254780795|r 163 LKKEIDHEFCFLKES-----WPK-NLPTGIIHADLFPDNVLFYNN---K--IMGLIDFYFSCNDFLMYDLSICINAWCFD 231 (316) Q Consensus 163 ~~~~l~~~l~~~~~~-----~~~-~Lp~g~IHgDl~~~NiL~~~~---~--i~giIDF~~~~~~~~i~DLAi~i~~~c~~ 231 (316) ..+.+......+... .+. .-|..+||||++.+|++|+.+ + ..++|||-.+.+++.++||+..+. .|.+ T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~HGD~w~nN~lf~~d~~g~~~~~~liDfQ~~~~g~p~~Dl~~fl~-~s~~ 171 (196) T smart00587 93 YIEKLDKLLDNLEDLKKEDKEPDEGEFNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAEDLHYFLL-TSLS 171 (196) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHCEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHH-HCCC T ss_conf 999999988999999998426676785377715434311535107999833036642203045882999999999-8899 Q ss_pred CCCCCCHHHHHHHHHHHHHC Q ss_conf 68887878899999887641 Q gi|254780795|r 232 ENNTYNPSRGFSILNGYNKV 251 (316) Q Consensus 232 ~~~~~d~~~~~~~l~gY~~v 251 (316) .+ .-.+....+|+.|++. T Consensus 172 ~~--~R~~~~~~lL~~Y~~~ 189 (196) T smart00587 172 VE--IRREHFDELLKFYYET 189 (196) T ss_pred HH--HHHHHHHHHHHHHHHH T ss_conf 99--9999999999999999 No 42 >cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct Probab=98.96 E-value=9.2e-09 Score=76.34 Aligned_cols=133 Identities=23% Similarity=0.347 Sum_probs=80.9 Q ss_pred ECCCCCEEEEEEEEECCCC-EEEEEECCC---------------------CCHH-----HHHHHHHHHHHHHHCCCCCCC Q ss_conf 0466812001799943995-899982166---------------------9988-----999999999998532677555 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKGT-FILTIYEKR---------------------MNEK-----DLPVFIELLHYISRNKLPCPI 81 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~~-yiLri~e~~---------------------~~~~-----~l~~~~~ll~~L~~~gipvP~ 81 (316) .|+.|=|-..|...+.+|. .++|+|.-. .+.. ....|...|..|.+.|+|||+ T Consensus 4 ~I~~GKEa~Vy~a~~~~g~~~avKi~r~~~~~Fk~~~~y~~~d~~~~~~~~~~~~~~~~wA~kEf~~L~rl~~~Gv~VP~ 83 (187) T cd05119 4 PIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVPK 83 (187) T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 75125571189999899999999997667343152777313204315788899999999999999999999985999980 Q ss_pred CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH Q ss_conf 10010267787522451557864788707689989999999986436753068754332311245645766752001552 Q gi|254780795|r 82 PIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE 161 (316) Q Consensus 82 pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~ 161 (316) |+.-. +.+.+|+|+.|.....+. |.+.. . .. T Consensus 84 Pi~~~----------~~vlvMe~Ig~~~~~ap~----------L~~~~-------~----------------------~~ 114 (187) T cd05119 84 PIDLN----------RHVLVMEFIGGDGIPAPR----------LKDVR-------L----------------------LE 114 (187) T ss_pred EEEEE----------CCEEEEEEECCCCCCCCC----------HHHCC-------C----------------------CH T ss_conf 79970----------987999981688977846----------53387-------5----------------------25 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 27889999999888765210777444022346422562796048731621356 Q gi|254780795|r 162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +......+.+..+.+. .. ..|++||||...|||+.++++. ||||..+.. T Consensus 115 ~~~~~~~~il~~~~~~-~~--~~glVHgDLSeyNilv~~~~~~-iID~pQaV~ 163 (187) T cd05119 115 DPEELYDQILELMRKL-YR--EAGLVHGDLSEYNILVDDGKVY-IIDVPQAVE 163 (187) T ss_pred HHHHHHHHHHHHHHHH-HH--HCCCCCCCCCHHHEEEECCEEE-EEECCCEEC T ss_conf 3999999999999999-99--7493103655554589899089-995572104 No 43 >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom Probab=98.89 E-value=6.7e-08 Score=70.74 Aligned_cols=134 Identities=23% Similarity=0.306 Sum_probs=83.5 Q ss_pred CCEEEEE-ECCCCCEEEEEEEEECCCC-EEEEEECCC-------------------CCHH-----HHHHHHHHHHHHHHC Q ss_conf 8605310-0466812001799943995-899982166-------------------9988-----999999999998532 Q gi|254780795|r 22 GQLNSVQ-PIIHGVENSNFVIQTSKGT-FILTIYEKR-------------------MNEK-----DLPVFIELLHYISRN 75 (316) Q Consensus 22 g~~~~~~-~i~~G~~Ntny~v~t~~~~-yiLri~e~~-------------------~~~~-----~l~~~~~ll~~L~~~ 75 (316) |-+.++. .|+.|=|-..|...+.+|. .++|+|+-. .+.. ....|...|..|.+. T Consensus 14 g~i~~v~~~I~tGKEa~Vy~a~~~~g~~~avKi~r~~~~sFk~~k~~r~y~~~~~~~~~~~~~r~~A~kE~~nL~rl~~~ 93 (198) T cd05144 14 GVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE 93 (198) T ss_pred CCCHHHCCEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 87754097562262612899998999899999999585304131210022125553128999999999999999999984 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 67755510010267787522451557864788707689989999999986436753068754332311245645766752 Q gi|254780795|r 76 KLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKC 155 (316) Q Consensus 76 gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~ 155 (316) |+|||+|+.-+. -+.+|+|++|.+...... ... T Consensus 94 Gv~VP~Pi~~~~----------~vlvMefI~g~~l~~~~~-----------------------------~~~-------- 126 (198) T cd05144 94 GFPVPKPIDWNR----------HAVVMEYIDGVELYRVRV-----------------------------LED-------- 126 (198) T ss_pred CCCCCCEEEECC----------CEEEEEECCCCCCCCCCC-----------------------------CHH-------- T ss_conf 999998588518----------989997337811311544-----------------------------151-------- Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCC Q ss_conf 00155227889999999888765210777444022346422562-796048731621356 Q gi|254780795|r 156 FDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCN 214 (316) Q Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~ 214 (316) ......+.+..+.... + .|++||||..-|||++ ++++. ||||..+.. T Consensus 127 -------~~~~y~~ii~~~~~l~-~---~glVHgDLSEyNIL~~~~~~~~-iID~~QaV~ 174 (198) T cd05144 127 -------PEEVLDEILEEIVKAY-K---HGIIHGDLSEFNILVDDDEKIY-IIDWPQMVS 174 (198) T ss_pred -------HHHHHHHHHHHHHHHH-H---CCCCCCCCCHHHEEECCCCCEE-EEECCCCCC T ss_conf -------9999999999999998-6---6943257436652554799899-996665015 No 44 >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c Probab=98.81 E-value=8e-08 Score=70.25 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=77.7 Q ss_pred CCCCCEEEEEEEEECCCC-EEEEEECCCC---------------------C--H-----HHHHHHHHHHHHHHHCCCCCC Q ss_conf 466812001799943995-8999821669---------------------9--8-----899999999999853267755 Q gi|254780795|r 30 IIHGVENSNFVIQTSKGT-FILTIYEKRM---------------------N--E-----KDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 30 i~~G~~Ntny~v~t~~~~-yiLri~e~~~---------------------~--~-----~~l~~~~~ll~~L~~~gipvP 80 (316) |+.|=|-..|...+.+|. .+||+|+-.. . . .....|...|..|.+.|+||| T Consensus 5 Ig~GKEa~Vy~a~~~~g~~~alKi~r~~~~sFk~~~~Y~~gd~r~~~~~~~~~~r~~~~~wA~kEf~~L~rl~~~Gv~VP 84 (190) T cd05147 5 ISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIPCP 84 (190) T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 30462604899998999899999957670110466776437665642555669889999999999999999998599999 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 51001026778752245155786478870768998999999998643675306875433231124564576675200155 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD 160 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~ 160 (316) +|+.- ++.+.+|+|+.+.....+. |. +... .. T Consensus 85 ~Pi~~----------~rhvlvMe~Ig~~g~pap~-------------L~----d~~~------~~--------------- 116 (190) T cd05147 85 EPILL----------KSHVLVMEFIGDDGWAAPR-------------LK----DAPL------SE--------------- 116 (190) T ss_pred CEEEE----------CCCEEEEEEECCCCCCCCC-------------CC----CCCC------CH--------------- T ss_conf 84685----------2989999985589951320-------------14----5889------87--------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 227889999999888765210777444022346422562796048731621356 Q gi|254780795|r 161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +...+...+.+..+.....+ .++|||||..-|||+.+++++ ||||..+.. T Consensus 117 ~~~~~~~~~il~~~~~ly~~---~~lVHGDLSEyNIl~~~~~~~-iID~pQaV~ 166 (190) T cd05147 117 SKARELYLQVIQIMRILYQD---CRLVHADLSEYNLLYHDGKLY-IIDVSQSVE 166 (190) T ss_pred HHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEECCCCEE-EEECCCCCC T ss_conf 99999999999999999997---493224531542052489989-996664114 No 45 >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro Probab=98.81 E-value=6.9e-08 Score=70.65 Aligned_cols=133 Identities=22% Similarity=0.337 Sum_probs=77.8 Q ss_pred CCCCCEEEEEEEEECCCC-EEEEEECC--------------------C---CCHHH-----HHHHHHHHHHHHHCCCCCC Q ss_conf 466812001799943995-89998216--------------------6---99889-----9999999999853267755 Q gi|254780795|r 30 IIHGVENSNFVIQTSKGT-FILTIYEK--------------------R---MNEKD-----LPVFIELLHYISRNKLPCP 80 (316) Q Consensus 30 i~~G~~Ntny~v~t~~~~-yiLri~e~--------------------~---~~~~~-----l~~~~~ll~~L~~~gipvP 80 (316) |+.|=|-..|...+.+|. .++|+|.- + .+... ...|...|..|.+.|+||| T Consensus 5 I~~GKEs~Vy~a~~~~g~~~alKi~r~~~~sFk~~~~Y~~gd~r~~~~~~~~~~r~~~~~wA~kEf~~L~~l~~~Gv~VP 84 (190) T cd05145 5 ISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVPVP 84 (190) T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 10351502899998999889999977264333144451057722405647669889999999999999999998599999 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 51001026778752245155786478870768998999999998643675306875433231124564576675200155 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD 160 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~ 160 (316) +|+.-. +.+.+|+|+.+.....|. |... .+. . T Consensus 85 ~Pi~~~----------rhvlvMefIg~~g~pap~----------L~d~-------~~~------~--------------- 116 (190) T cd05145 85 EPILLK----------KNVLVMEFIGDDGSPAPR----------LKDV-------PLE------E--------------- 116 (190) T ss_pred CEEEEC----------CCEEEEEEECCCCCCCCC----------HHHC-------CCC------H--------------- T ss_conf 568862----------989999986589842430----------3205-------677------3--------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 227889999999888765210777444022346422562796048731621356 Q gi|254780795|r 161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .+......+.+..+.+.. . ..|++||||...|||+++++++ ||||..+.. T Consensus 117 ~~~~~~~~~il~~~~~l~-~--~~glVHgDLSEyNILv~~~~~~-iID~pQaV~ 166 (190) T cd05145 117 EEAEELYEQVVEQMRRLY-Q--EAGLVHGDLSEYNILYHDGKPY-IIDVSQAVE 166 (190) T ss_pred HHHHHHHHHHHHHHHHHH-H--HCCEEECCCCHHHEEEECCCEE-EEECCCCCC T ss_conf 509999999999999999-9--7492103641553389789479-995576125 No 46 >pfam06293 Kdo Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica. Probab=98.78 E-value=1.4e-07 Score=68.71 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=87.0 Q ss_pred EEEEEEECCCCEEEEEEC-C----C---------CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 017999439958999821-6----6---------9988999999999998532677555100102677875224515578 Q gi|254780795|r 37 SNFVIQTSKGTFILTIYE-K----R---------MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 37 tny~v~t~~~~yiLri~e-~----~---------~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|++......++++.|. + + ....-.-.|..++..|.+.|||||+|+.-..-.. . ..-+.+.|. T Consensus 19 ~~~f~~~~~~~~~lr~y~rgg~~~~i~k~~~~~~~~~~ra~rE~~~L~~L~~~Gipvp~pva~~~~~~-~-~~~~a~LIT 96 (206) T pfam06293 19 TTWFVVARKDNGALRHYYRGGMWGKLNRDRYRFPLGRTRSFREFRLLRRLREAGVPVPKPVAAGAVKV-G-GEYQADLLT 96 (206) T ss_pred EEEEEEECCCCEEEEEEEECCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECC-C-CCEEEEEEH T ss_conf 18999966865244468877706466000134748886999999999999985999887668999836-8-717998864 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +.|+|.. .+...+++..... +.....+...+...+..+. T Consensus 97 e~l~~~~----------~L~~~l~~~~~~~------------------------~~~~~~l~~~vg~~i~~~H------- 135 (206) T pfam06293 97 ERLEGAQ----------DLVTWLAQWADPA------------------------EELRRALWRAVGRLIARMH------- 135 (206) T ss_pred HHCCCCH----------HHHHHHHHCCCCC------------------------HHHHHHHHHHHHHHHHHHH------- T ss_conf 1356842----------0999986134445------------------------3678999999999999999------- Q ss_pred CCCEEECCCCCCCEEECCC----CCEEEECCCCCCCC-----HHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 7744402234642256279----60487316213568-----000198999986431168887878899999887 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNN----KIMGLIDFYFSCND-----FLMYDLSICINAWCFDENNTYNPSRGFSILNGY 248 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~----~i~giIDF~~~~~~-----~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY 248 (316) ..|+.|+||++.||+++.+ ++ .+||||-|..- +..-||+-..-+. .+-.+...-+..|++|| T Consensus 136 ~~gi~H~DL~~~nIll~~~~~~~~~-~LIDldr~~~r~~~~~~~~~dL~rL~rS~---~~~~~~~~dw~~~l~~Y 206 (206) T pfam06293 136 RAGVNHTDLNAHNILLDTGEGGFKV-WLIDFDKCRRRLRGDRWREKDLARLKRSF---LSIGLTEADWARLLSAY 206 (206) T ss_pred HCCCCCCCCCCEEEEEECCCCCCEE-EEEECCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHC T ss_conf 8768458999000898179987539-99987667056887138898799999765---00899999999999639 No 47 >smart00090 RIO RIO-like kinase. Probab=98.77 E-value=1.9e-07 Score=67.86 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=90.6 Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEE-ECCCCCEEEEEEEE--ECCC-CEEEEEECC----------------C-----C Q ss_conf 57708999999999848998605310-04668120017999--4399-589998216----------------6-----9 Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQ-PIIHGVENSNFVIQ--TSKG-TFILTIYEK----------------R-----M 57 (316) Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~-~i~~G~~Ntny~v~--t~~~-~yiLri~e~----------------~-----~ 57 (316) ||...+.-.|..+.++- -+.++. .|+.|=|-..|... +.+| ..++|+|.- | . T Consensus 11 v~d~~t~laL~~L~~rg---~i~~l~~~I~~GKEa~Vy~a~~~~~~g~~vavKi~r~~~~~Fk~~~~y~~gd~Rf~~~~~ 87 (237) T smart00090 11 VLDGRTRLALYSLLNRG---ILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKI 87 (237) T ss_pred HCCHHHHHHHHHHHHCC---CCHHHCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCC T ss_conf 35886899999999779---765539754024170379998447999889999977475230537663365410256888 Q ss_pred CHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 988-----999999999998532677555100102677875224515578647887076899899999999864367530 Q gi|254780795|r 58 NEK-----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT 132 (316) Q Consensus 58 ~~~-----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~ 132 (316) +.- ....|...|..|.+.|+|||+|+.-. +.+.+|+|+.|.....+... T Consensus 88 ~~~~~~~~wA~kEf~nL~rl~~aGv~VP~Pi~~~----------~nvlvMefIg~~~~pap~L~---------------- 141 (237) T smart00090 88 NPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAWR----------RNVLVMEFIGGDGLPAPRLK---------------- 141 (237) T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE----------CCEEEEEEECCCCCCCCCHH---------------- T ss_conf 9889999999999999999998599999848964----------89899997468897454321---------------- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEECCCCCCCEEECCCCCEEEECCCC Q ss_conf 68754332311245645766752001552278899999998887652107774-44022346422562796048731621 Q gi|254780795|r 133 KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG-IIHADLFPDNVLFYNNKIMGLIDFYF 211 (316) Q Consensus 133 ~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g-~IHgDl~~~NiL~~~~~i~giIDF~~ 211 (316) +.+. .. .+......+.+..+.+.. ..| ++||||..-|||+.++++. ||||.. T Consensus 142 -d~~~------~~---------------~~~~~~~~~il~~~~~~y----~~g~lVHgDLSEyNIL~~~~~~~-iID~~Q 194 (237) T smart00090 142 -DVEP------EE---------------EEEFELYDDILEEMRKLY----KEGELVHGDLSEYNILVHDGKVV-IIDVSQ 194 (237) T ss_pred -CCCC------CH---------------HHHHHHHHHHHHHHHHHH----HHCCEEECCHHHHHHEEECCCEE-EEECCC T ss_conf -1688------85---------------779999999999999999----82795203604655142089679-994675 Q ss_pred CCC Q ss_conf 356 Q gi|254780795|r 212 SCN 214 (316) Q Consensus 212 ~~~ 214 (316) +.. T Consensus 195 aV~ 197 (237) T smart00090 195 SVE 197 (237) T ss_pred CCC T ss_conf 236 No 48 >cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown. Probab=98.73 E-value=4.2e-07 Score=65.57 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 99999999985326775551001026778752245155786478870768998999999998643675306875433231 Q gi|254780795|r 63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNT 142 (316) Q Consensus 63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~ 142 (316) ..|...|..|.+.|+|||+|+.-. +.+.+|+|+.+.....+.. . +..+ T Consensus 74 ~kEf~nL~rl~~~Gv~vP~Pi~~~----------~~vlvMe~ig~~g~pap~L----------~-------d~~~----- 121 (197) T cd05146 74 EKEMHNLKRMQKAGIPCPEVVVLK----------KHVLVMSFIGDDQVPAPKL----------K-------DAKL----- 121 (197) T ss_pred HHHHHHHHHHHHCCCCCCCEEEEC----------CCEEEEEEECCCCCCCCCH----------H-------CCCC----- T ss_conf 999999999998599999846752----------9889999836999707431----------0-------1678----- Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 124564576675200155227889999999888765210777444022346422562796048731621356 Q gi|254780795|r 143 LSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) ... +......+.+..+.... . ..|++||||..-|+|+.+++++ ||||..+.. T Consensus 122 -~~~---------------~~~~~~~~~i~~i~~l~-~--~~gLVHgDlSEyNil~~~~~~~-iID~~QaV~ 173 (197) T cd05146 122 -NDE---------------EMKNAYYQVLSMMKQLY-K--ECNLVHADLSEYNMLWHDGKVW-FIDVSQSVE 173 (197) T ss_pred -CHH---------------HHHHHHHHHHHHHHHHH-H--HCCCEECCCCHHHEEECCCCEE-EEECCCCCC T ss_conf -848---------------89999999999999999-9--8395012410330164279879-996774015 No 49 >COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning] Probab=98.73 E-value=4.2e-07 Score=65.61 Aligned_cols=157 Identities=18% Similarity=0.292 Sum_probs=92.3 Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEE-CCCCCEEEEEEEEECCCC-EEEEEECCC---------------------CCH Q ss_conf 577089999999998489986053100-466812001799943995-899982166---------------------998 Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQP-IIHGVENSNFVIQTSKGT-FILTIYEKR---------------------MNE 59 (316) Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~~-i~~G~~Ntny~v~t~~~~-yiLri~e~~---------------------~~~ 59 (316) |+...|.+.|..+.+. |.+..+.| |+.|=+-..|+-.+.++. +.+|||... .+. T Consensus 31 v~D~~t~~~l~~L~~r---g~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~r 107 (268) T COG1718 31 VFDKRTLETLRRLLSR---GVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNR 107 (268) T ss_pred HHHHHHHHHHHHHHCC---CCEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHCCHHHHCCCCCH T ss_conf 5116899999998628---8601367620377414778731578753799997500355646888773264653478889 Q ss_pred HHH-----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 899-----999999999853267755510010267787522451557864788707689989999999986436753068 Q gi|254780795|r 60 KDL-----PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN 134 (316) Q Consensus 60 ~~l-----~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~ 134 (316) ..+ ..|..-|..+.+.|++||+|+.-.+| +.+|+||...-...|. +++ T Consensus 108 r~lv~~W~~kEf~NL~R~~eAGVrvP~Pi~~~~n----------VLvMEfIg~~g~pAP~-----------------LkD 160 (268) T COG1718 108 RKLVFAWARKEFRNLKRAYEAGVRVPEPIAFRNN----------VLVMEFIGDDGLPAPR-----------------LKD 160 (268) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC----------EEEEEECCCCCCCCCC-----------------CCC T ss_conf 9999999999999999999759999986100377----------5899831677887987-----------------334 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 75433231124564576675200155227889999999888765210777444022346422562796048731621356 Q gi|254780795|r 135 FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 135 f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .+.. .. +........++.+... .+ ..+++||||-..|||+.++... ||||..|.. T Consensus 161 v~~e------~~---------------e~~~~~~~~v~~~~~l-~~--~a~LVHgDLSEyNiL~~~~~p~-iID~~QaV~ 215 (268) T COG1718 161 VPLE------LE---------------EAEGLYEDVVEYMRRL-YK--EAGLVHGDLSEYNILVHDGEPY-IIDVSQAVT 215 (268) T ss_pred CCCC------CH---------------HHHHHHHHHHHHHHHH-HH--HCCCCCCCCHHHEEEEECCEEE-EEECCCCCC T ss_conf 7877------15---------------5899999999999999-98--6294113532350677799079-998832214 No 50 >KOG3087 consensus Probab=98.64 E-value=1.4e-06 Score=62.19 Aligned_cols=162 Identities=25% Similarity=0.257 Sum_probs=94.1 Q ss_pred EEEECCCCCEEEEEEEEECCCCEEEEE-ECCCCCHHHHH---------HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 310046681200179994399589998-21669988999---------99999999853267755510010267787522 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSKGTFILTI-YEKRMNEKDLP---------VFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~~~yiLri-~e~~~~~~~l~---------~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316) ++..+..|.|-+.+...-+...+|+|- |.++..-..|+ .|..++..+..-||+||..+..- . T Consensus 11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D--------~ 82 (229) T KOG3087 11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFID--------T 82 (229) T ss_pred CCEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--------C T ss_conf 50466436534675300377346775046423466688889988888999999888998288875489872--------6 Q ss_pred CCCEEEEECCCCCCCC---------CC-----CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH Q ss_conf 4515578647887076---------89-----989999999986436753068754332311245645766752001552 Q gi|254780795|r 96 KKPANIFSFIKGSPLN---------HI-----SDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE 161 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~---------~~-----~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~ 161 (316) ++-...|+|++|.+.. .. ..+.++.+|+.+|+||. T Consensus 83 ~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~------------------------------- 131 (229) T KOG3087 83 YGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD------------------------------- 131 (229) T ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH------------------------------- T ss_conf 7986899951540479999999706754226689999999999987632------------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC--CCCCE-EEECCCCCCCCHHHCCHHHHH----HH-HHHCCC Q ss_conf 27889999999888765210777444022346422562--79604-873162135680001989999----86-431168 Q gi|254780795|r 162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY--NNKIM-GLIDFYFSCNDFLMYDLSICI----NA-WCFDEN 233 (316) Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~--~~~i~-giIDF~~~~~~~~i~DLAi~i----~~-~c~~~~ 233 (316) .++||||+..+|++.. ++++. =+|||+-+..+-..-|=||-+ -+ .|..+. T Consensus 132 ----------------------ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~~~EDKgVDLYVlErA~lsTh~~ 189 (229) T KOG3087 132 ----------------------NDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSRLPEDKGVDLYVLERAVLSTHDK 189 (229) T ss_pred ----------------------CCEECCCCCCCCEEEECCCCCCCEEEEEECCHHCCCCCCCCCCEEEEEHHHHHCCCCC T ss_conf ----------------------7811255451316883698867548886041002357523563123246767315765 Q ss_pred CCCCHHHHHHHHHHHHHC Q ss_conf 887878899999887641 Q gi|254780795|r 234 NTYNPSRGFSILNGYNKV 251 (316) Q Consensus 234 ~~~d~~~~~~~l~gY~~v 251 (316) -+..+..|++||.+- T Consensus 190 ---~~~~fe~~~~~Y~~~ 204 (229) T KOG3087 190 ---KALLFEGFLEGYRAS 204 (229) T ss_pred ---CHHHHHHHHHHHHHC T ss_conf ---088999999999850 No 51 >pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined. Probab=98.56 E-value=3.4e-07 Score=66.23 Aligned_cols=97 Identities=24% Similarity=0.399 Sum_probs=60.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99999999985326775551001026778752245155786478--8707689989999999986436753068754332 Q gi|254780795|r 63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK--GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRK 140 (316) Q Consensus 63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~--G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~ 140 (316) ..|...|..|.+.|+|||+|+.-. +-+.+|+|+. |.+. -+|. +.+. T Consensus 54 ~kEf~nL~rl~~~Gv~VP~Pi~~~----------r~vlvMe~Ig~~g~pa---------------p~Lk----d~~~--- 101 (186) T pfam01163 54 EKEFRNLKRLYEAGVPVPKPIAVN----------RHVLVMEFIGDDGVPA---------------PRLK----DVEL--- 101 (186) T ss_pred HHHHHHHHHHHHCCCCCCCEEEEE----------CCEEEEEEECCCCCCC---------------CCCC----CCCC--- T ss_conf 999999999998499999858962----------9899999856899335---------------5010----0786--- Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 31124564576675200155227889999999888765210777444022346422562796048731621356 Q gi|254780795|r 141 NTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +.+......+.+..+..... ..|++||||...|||+.++++. ||||..+.. T Consensus 102 -------------------~~~~~~~~~~ii~~~~~~y~---~~glVHgDLSEyNIL~~~~~~~-iID~~QaV~ 152 (186) T pfam01163 102 -------------------EEEAEEIYDEIIREMRRLYQ---EAGLVHGDLSEYNVLVDDDKPV-IIDVPQAVE 152 (186) T ss_pred -------------------CHHHHHHHHHHHHHHHHHHH---HCCCEECCCHHHHEEEECCCEE-EEECCCCCC T ss_conf -------------------45399999999999999999---6693213620655064389679-995675225 No 52 >pfam06176 WaaY Lipopolysaccharide core biosynthesis protein (WaaY). This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system. Probab=98.54 E-value=2.1e-06 Score=61.02 Aligned_cols=163 Identities=14% Similarity=0.274 Sum_probs=89.6 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHH--HH------HHHHHHHH-- Q ss_conf 657708999999999848998605310046681200179994399589998216699889--99------99999999-- Q gi|254780795|r 2 AVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKD--LP------VFIELLHY-- 71 (316) Q Consensus 2 aVyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~--l~------~~~~ll~~-- 71 (316) .||+.=+..+...++..|==+++..++-.++-..|..-+|+|+.++||++.+.+.....+ +. ++.+++.. T Consensus 11 ~vy~ke~~~~y~~l~~~~l~~~~k~~kv~~~~~~~~V~lIe~~~~kyIlK~~~~~~~~~eR~~~s~ikg~~y~~li~~~~ 90 (229) T pfam06176 11 SVFYKDNDNKYKEIFNDFLSYNFKTIKVFRNIDDTKVSLIDTDYGKYVLKVFAPKVKRNERFLKSLVKGDYYENLIVQTD 90 (229) T ss_pred EEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 79965865039999999972650366742278752699999759558996675211128999999861489999999999 Q ss_pred -HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH Q ss_conf -8532677555100102677875224515578647887076899899999999864367530687543323112456457 Q gi|254780795|r 72 -ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF 150 (316) Q Consensus 72 -L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~ 150 (316) +...|+.+..-..-.--..........+.|++|++|..+.... T Consensus 91 ~~~~eG~~~~nd~yl~aekk~~r~~~~~i~l~EYIEG~~l~~~~------------------------------------ 134 (229) T pfam06176 91 RVRSEGLTSLNDFYLLAERKTLNYAHTYIMLIEYIEGVELNDMP------------------------------------ 134 (229) T ss_pred HHHHCCCCCCCCEEEEEEHHHCCEEEEEEEEEEEECCCCCCCCC------------------------------------ T ss_conf 88761330003200131214256014566665322573246644------------------------------------ Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHH Q ss_conf 6675200155227889999999888765210777444022346422562796048731621356800 Q gi|254780795|r 151 LWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL 217 (316) Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~ 217 (316) .++++....+.+.+..+.+ .|+.|||+|++|.+..++.+- |||- +|.+.. T Consensus 135 -------dI~e~~~~~Ik~~I~~LH~-------~g~~sgD~h~gNFI~s~~~ir-IIDl--sgK~~~ 184 (229) T pfam06176 135 -------EISEDVKAKIKQSIESLHQ-------HGMVSGDPHRGNFIVSKDGVR-IIDL--SGKRCT 184 (229) T ss_pred -------CCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCHH T ss_conf -------4566679999999999997-------166358998765475089779-9988--885167 No 53 >COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms] Probab=98.53 E-value=1.7e-06 Score=61.65 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=81.5 Q ss_pred ECCCCCEEEEEEEEECCC-CEEEEEECC-------------------CCC-----HHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 046681200179994399-589998216-------------------699-----8899999999999853267755510 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKG-TFILTIYEK-------------------RMN-----EKDLPVFIELLHYISRNKLPCPIPI 83 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~-------------------~~~-----~~~l~~~~~ll~~L~~~gipvP~pi 83 (316) .|.-|=+-..|.+.+.+| +.++|+.+- +.+ ......|.+.|+.|...|++||+|+ T Consensus 98 ~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP~P~ 177 (304) T COG0478 98 KIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVPKPI 177 (304) T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 12567543179998899988899862057235654220065651356762224678989999999998403389899853 Q ss_pred CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 01026778752245155786478870768998999999998643675306875433231124564576675200155227 Q gi|254780795|r 84 PRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL 163 (316) Q Consensus 84 ~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 163 (316) .- ++-+++|++++|..+..... . . .+. T Consensus 178 ~~----------nRHaVvMe~ieG~eL~~~r~----------------------~------~---------------en~ 204 (304) T COG0478 178 AW----------NRHAVVMEYIEGVELYRLRL----------------------D------V---------------ENP 204 (304) T ss_pred CC----------CCCEEEEEHCCCCEEECCCC----------------------C------C---------------CCH T ss_conf 44----------45243020105614002667----------------------6------3---------------178 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 88999999988876521077744402234642256279-6048731621356 Q gi|254780795|r 164 KKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 164 ~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) ...+...+..+.... ..|++|||+..-||+++++ .+. +|||=.|.. T Consensus 205 ~~il~~il~~~~~~~----~~GiVHGDlSefNIlV~~dg~~~-vIDwPQ~v~ 251 (304) T COG0478 205 DEILDKILEEVRKAY----RRGIVHGDLSEFNILVTEDGDIV-VIDWPQAVP 251 (304) T ss_pred HHHHHHHHHHHHHHH----HCCCCCCCCCHHEEEEECCCCEE-EEECCCCCC T ss_conf 999999999999999----72911147735418981699889-986766645 No 54 >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional Probab=98.44 E-value=7e-06 Score=57.70 Aligned_cols=161 Identities=15% Similarity=0.256 Sum_probs=84.2 Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHH--HHH------HHHHH---HHH Q ss_conf 5770899999999984899860531004668120017999439958999821669988--999------99999---999 Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK--DLP------VFIEL---LHY 71 (316) Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~--~l~------~~~~l---l~~ 71 (316) ||..=...+...+...|==++...++-.++--.|..-+|+++.++|||+.+.+..... .+. +...+ ++. T Consensus 12 iy~~e~~~~y~el~~~~l~~~~k~~~v~k~~~~~~ValIei~~kkyIlK~~r~~~~~~eR~~~sf~kg~~~~~ll~~~~~ 91 (232) T PRK10359 12 VFYKDNDNKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDR 91 (232) T ss_pred EEECCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 99627652499999999627615888523787526999997693799956740113589999999615799999999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 85326775551001026778752245155786478870768998999999998643675306875433231124564576 Q gi|254780795|r 72 ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFL 151 (316) Q Consensus 72 L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~ 151 (316) +.+.|+.+.....-.--..........+.|++|++|+.+.... T Consensus 92 ~~~~g~~~~~d~yl~aekk~~~~i~~s~~l~EYIEG~~l~~~~------------------------------------- 134 (232) T PRK10359 92 VRSEGLAFLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP------------------------------------- 134 (232) T ss_pred HHHCCCCCCCCHHEEEEHHHCCEEEEEEEEEEEECCCCCCCHH------------------------------------- T ss_conf 8871523123411243413155222365564322584456444------------------------------------- Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCH Q ss_conf 67520015522788999999988876521077744402234642256279604873162135680 Q gi|254780795|r 152 WAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF 216 (316) Q Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~ 216 (316) .+++...+.+.+.+..+.+ .|..|||+|++|.+..++++. +||- +|.+. T Consensus 135 ------dI~~~~k~~I~~~I~kLH~-------~G~~sGD~h~gNFi~t~~glr-IIDl--sgKk~ 183 (232) T PRK10359 135 ------EISEDVKAKIKASIESLHQ-------HGMVSGDPHKGNFIVSKDGLR-IIDL--SGKRC 183 (232) T ss_pred ------HCCHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCEEEECCCEE-EEEC--CCCCH T ss_conf ------3266689999999999987-------476258988664798589579-9988--77305 No 55 >KOG2270 consensus Probab=98.35 E-value=6.3e-06 Score=57.97 Aligned_cols=143 Identities=20% Similarity=0.309 Sum_probs=89.1 Q ss_pred CCCCCEEEEEE-CCCCCEEEEEEEEECCCC-EEEEEEC-------C-----------------CCCHH----HHHHHHHH Q ss_conf 89986053100-466812001799943995-8999821-------6-----------------69988----99999999 Q gi|254780795|r 19 YAIGQLNSVQP-IIHGVENSNFVIQTSKGT-FILTIYE-------K-----------------RMNEK----DLPVFIEL 68 (316) Q Consensus 19 y~lg~~~~~~~-i~~G~~Ntny~v~t~~~~-yiLri~e-------~-----------------~~~~~----~l~~~~~l 68 (316) -+-|.+.++.| |+.|-+--.|.++.++|+ |.++||. . +.... ...-++.- T Consensus 140 l~RG~i~~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RN 219 (520) T KOG2270 140 LNRGVIVEINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRN 219 (520) T ss_pred HHCCEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEEECHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 84570440254230475330576306798667899876447887131120255023323543578188999999999988 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 99985326775551001026778752245155786478870768998999999998643675306875433231124564 Q gi|254780795|r 69 LHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNL 148 (316) Q Consensus 69 l~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~ 148 (316) |..|++.|||||.||.-++. +.||+||.+.....|- +++.++. .... T Consensus 220 LkRl~~aGIP~PePIlLk~h----------VLVM~FlGrdgw~aPk-----------------LKd~~ls------~~ka 266 (520) T KOG2270 220 LKRLNNAGIPCPEPILLKNH----------VLVMEFLGRDGWAAPK-----------------LKDASLS------TSKA 266 (520) T ss_pred HHHHHHCCCCCCCCEEEECC----------EEEEEECCCCCCCCCC-----------------CCCCCCC------HHHH T ss_conf 99998369999984345153----------6766301578876733-----------------0256678------5778 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 57667520015522788999999988876521077744402234642256279604873162135 Q gi|254780795|r 149 KFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) . .+-..+-......++. ..++|+||---|+|+.++++. |||-..+. T Consensus 267 ~----------------~~Y~~~v~~MR~lY~~--c~LVHADLSEfN~LyhdG~ly-iIDVSQSV 312 (520) T KOG2270 267 R----------------ELYQQCVRIMRRLYQK--CRLVHADLSEFNLLYHDGKLY-IIDVSQSV 312 (520) T ss_pred H----------------HHHHHHHHHHHHHHHH--HCEECCCHHHHHHEEECCEEE-EEECCCCC T ss_conf 9----------------9999999999999987--550015565531137778799-99764334 No 56 >COG2187 Uncharacterized protein conserved in bacteria [Function unknown] Probab=98.33 E-value=1.7e-05 Score=55.23 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=84.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH-HH---HHHH Q ss_conf 8998999999998643675306875433---23112456457667520----015522788999999988-87---6521 Q gi|254780795|r 112 HISDIHCEEIGSMLASMHQKTKNFHLYR---KNTLSPLNLKFLWAKCF----DKVDEDLKKEIDHEFCFL-KE---SWPK 180 (316) Q Consensus 112 ~~~~~~~~~lG~~La~lH~~~~~f~~~r---~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~-~~---~~~~ 180 (316) .+++.++.++|+.+|++|+.+..-+... ...--...+...+.... ...+....+.+....+.+ ++ ..-. T Consensus 123 ~lt~~~l~~lak~vA~fH~~a~~n~~i~~~G~~~~~~~~~~eN~~q~~~~l~~~~s~~~~d~i~~~t~~f~e~~~~lf~~ 202 (337) T COG2187 123 KLTESLLDALAKVVARFHQRAPRNPCIDSFGEVGAVAYRVRENFAQTRKYLGIVQSKQQIDRIEHMTEEFLERHGPLFDR 202 (337) T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99879999999999999604887852002687777875787559987410375468899999999999999862089998 Q ss_pred CCCCC---EEECCCCCCCEEECCCCCEEEE---CCCCC-CCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 07774---4402234642256279604873---16213-56800019899998643116888787889999988764188 Q gi|254780795|r 181 NLPTG---IIHADLFPDNVLFYNNKIMGLI---DFYFS-CNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRK 253 (316) Q Consensus 181 ~Lp~g---~IHgDl~~~NiL~~~~~i~giI---DF~~~-~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrp 253 (316) ....| =||||+|.+||.+-++++. ++ -|.+- .+...+||+|-.+-++ +..| -++.+..|+++|..... T Consensus 203 R~~~g~IRecHGDLhl~ni~l~dg~~~-LFDCIEFNd~fr~iDv~~D~AFl~MDL--e~~g--r~dla~~~ln~Yl~~tg 277 (337) T COG2187 203 RIAEGFIRECHGDLHLRNICLWDGEPA-LFDCIEFNDPFRFIDVLYDLAFLAMDL--EFRG--RKDLARRFLNTYLEETG 277 (337) T ss_pred HHHCCCCEECCCCHHHCCEEEECCCCE-EEEEEECCCCCHHHHHHHHHHHHHHHH--HHCC--CHHHHHHHHHHHHHHHC T ss_conf 886597121544010055556548615-887752178512788999999997107--6438--86799999999998708 Q ss_pred CCHHHHHHHHHHH-HHHHHH Q ss_conf 9989999999999-999999 Q gi|254780795|r 254 ISENELQSLPTLL-RGAALR 272 (316) Q Consensus 254 Ls~~E~~~l~~ll-~~aalR 272 (316) ...-..+||.++ +.|++| T Consensus 278 -D~~gl~lLpfyla~rA~VR 296 (337) T COG2187 278 -DWDGLELLPFYLAYRAYVR 296 (337) T ss_pred -CCCHHHHHHHHHHHHHHHH T ss_conf -9307777289999999998 No 57 >TIGR01767 MTRK 5-methylthioribose kinase; InterPro: IPR009212 Members of this family are 5-methylthioribose kinases (2.7.1.100 from EC) that catalyse phosphorylation of 5-methylthioribose (MTR), a step in the recycling of methionine from 5'-methylthioadenosine, a co-product of polyamine biosynthesis. The preceding step of methylthioadenosine (MTA) hydrolysis to MTR is catalysed by 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/AdoHcy) nucleosidase (PIRSF006618 from PIRSF). Bacillus subtilis MtnK (formerly YkrT) and Klebsiella pneumoniae MtrK have been experimentally characterised. Klebsiella pneumoniae MtrK expression is regulated by methionine . As this enzyme is absent in mammals, it has been considered a target for rational drug design.; GO: 0046522 S-methyl-5-thioribose kinase activity, 0009086 methionine biosynthetic process. Probab=98.17 E-value=5.3e-06 Score=58.49 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=100.8 Q ss_pred ECCCCCEEEEEEEEECCCC--EEEEE-------E-CCCCCHHHHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CC Q ss_conf 0466812001799943995--89998-------2-1669988999-9999999985326775551001026778752-24 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKGT--FILTI-------Y-EKRMNEKDLP-VFIELLHYISRNKLPCPIPIPRNDGKLYGFL-CK 96 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~~--yiLri-------~-e~~~~~~~l~-~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~-~~ 96 (316) .|..|--|-.|.|.-.+|. -|+|= . |+-. --|+ ..++. +-|-.++=.+|.-++. +..+ .+ T Consensus 2 EvGDGNLNlVF~v~d~~g~~~aivKQAlPYvr~VGeSWP--LtldRar~E~-~aL~rq~~h~P~~vp~-----i~hfD~e 73 (386) T TIGR01767 2 EVGDGNLNLVFKVYDREGARAAIVKQALPYVRVVGESWP--LTLDRARLEA-SALVRQEEHAPQLVPK-----IYHFDEE 73 (386) T ss_pred CCCCCCCCCEEEEECCCCCEEEEEEECCCEEEEECCCCC--CHHHHHHHHH-HHHHHHHHCCCCCCCE-----EEEECCC T ss_conf 546445321678875788602001114770477527688--6267899989-9988643037887333-----7861686 Q ss_pred CCEEEEECCCC-CCC------C-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH--------HHHH---------HH Q ss_conf 51557864788-707------6-8998999999998643675306875433231124--------5645---------76 Q gi|254780795|r 97 KPANIFSFIKG-SPL------N-HISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSP--------LNLK---------FL 151 (316) Q Consensus 97 k~~~L~~~i~G-~~~------~-~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~--------~~~~---------~~ 151 (316) ..+.||+++.- ..+ . ..-|...+++|..||+.==-+.+|.+..+..... .-+. ++ T Consensus 74 ~Av~vMEdLs~Ph~I~R~~LI~g~~yP~~ar~iG~fla~tLF~~SD~~l~pk~kKa~va~F~nnpelCdITE~LvF~DPy 153 (386) T TIGR01767 74 LAVIVMEDLSDPHKILRKELIEGEQYPQLARDIGEFLAKTLFRSSDYALEPKEKKADVAQFINNPELCDITEDLVFSDPY 153 (386) T ss_pred CEEEHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC T ss_conf 30102023161578998776324311389999989988886202553217547788998631783344454530048851 Q ss_pred HHHHHHCCCHHHHHHH---------HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHH Q ss_conf 6752001552278899---------9999988876521077744402234642256279604873162135680001989 Q gi|254780795|r 152 WAKCFDKVDEDLKKEI---------DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLS 222 (316) Q Consensus 152 ~~~~~~~~~~~~~~~l---------~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLA 222 (316) +..-.+...+++...+ +-+.+.+++....+ -..++|||+|.+-|++.+.+.. +||=|++-|||..||++ T Consensus 154 fdh~~N~~~~eL~~~Va~Lr~d~~lK~eaa~LK~~F~a~-AEtLlHGDlHsGSIfv~e~etk-~IDpEFafyGPigFDiG 231 (386) T TIGR01767 154 FDHERNDYEEELEAVVAELRDDADLKVEAAKLKHSFLAS-AETLLHGDLHSGSIFVAETETK-VIDPEFAFYGPIGFDIG 231 (386) T ss_pred CCHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHCCCEEEECCCEE-EECCCCCCCCCCHHHHH T ss_conf 001126881434389998605951229999975787741-2577404210252435347301-11453113176077899 Q ss_pred HHH Q ss_conf 999 Q gi|254780795|r 223 ICI 225 (316) Q Consensus 223 i~i 225 (316) .+| T Consensus 232 ~~i 234 (386) T TIGR01767 232 TLI 234 (386) T ss_pred HHH T ss_conf 999 No 58 >cd06614 STKc_PAK Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I Probab=98.15 E-value=6.6e-05 Score=51.37 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=82.3 Q ss_pred HHHHHHHHCCCC-CEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 999999848998-605310046681200179994-399-5899982166--99889999999999985326775551001 Q gi|254780795|r 11 EIQSFVQEYAIG-QLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPR 85 (316) Q Consensus 11 el~~il~~y~lg-~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~ 85 (316) +++.++.+=|.. ...-++.|..|.--+.|+..- .+| .|.+|+.... ...+.+..|+.+|..|.. |.+++- T Consensus 7 ~~~~~~~~~d~~~~Y~i~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~l 81 (287) T cd06614 7 ALKDIVSEGDPRELYDNLEKIGEGASGEVYTATDRATGKEVAIKKMRLRKQPKKELIINEILIMKECKH-----PNIVNY 81 (287) T ss_pred HHHHHCCCCCHHHCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCC-----CCCCCE T ss_conf 999874799941565974798038685999999999998999999870674579999999999987799-----999919 Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH Q ss_conf 02677875224515578647887076899899999999864367530687543323112456457667520015522788 Q gi|254780795|r 86 NDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKK 165 (316) Q Consensus 86 ~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (316) .+ .....+..+.+++|++|..+.. .+ .+....+ ..... ..... T Consensus 82 ~~---~~~~~~~~~ivmEy~~gG~L~~-----------~i---~~~~~~l--------~e~~~------------~~i~~ 124 (287) T cd06614 82 YD---SYLVGDELWVVMEYMDGGSLTD-----------II---TQTFVRM--------NESQI------------AYVCR 124 (287) T ss_pred EE---EEEECCEEEEEEECCCCCCHHH-----------HH---HHCCCCC--------CHHHH------------HHHHH T ss_conf 99---9998999999996888992899-----------99---8668998--------99999------------99999 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 999999988876521077744402234642256279604873162135 Q gi|254780795|r 166 EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 166 ~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+...+..+.+ +++||.|+.|.|||++.+...-|+||+.|. T Consensus 125 qil~aL~ylH~-------~~IiHRDiKp~NILl~~~g~vKl~DFGla~ 165 (287) T cd06614 125 EVLQGLEYLHS-------QNVIHRDIKSDNILLSKDGSVKLADFGFAA 165 (287) T ss_pred HHHHHHHHHHH-------CCEECCCCCHHHEEECCCCCEEEECCCCCE T ss_conf 99999999998-------894402176798789899999996177755 No 59 >cd06654 STKc_PAK1 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulati Probab=98.11 E-value=0.00023 Score=47.90 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=83.1 Q ss_pred HHHHHHHHHHC-CCCCE----EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999999848-99860----5310046681200179994-399-5899982166--99889999999999985326775 Q gi|254780795|r 9 QKEIQSFVQEY-AIGQL----NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPC 79 (316) Q Consensus 9 ~~el~~il~~y-~lg~~----~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipv 79 (316) .+|+-.=|+.| .+|.+ .-++.|..|.--+.|+... .+| .+.+|..... ...+.+..|+.+|..+.. T Consensus 2 ~~~~~~~~~~~~~~gdp~~~Y~~~~~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H----- 76 (296) T cd06654 2 DEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN----- 76 (296) T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCC----- T ss_conf 589999998434999977041888897038683999999889998999999843227538999999999987799----- Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 55100102677875224515578647887076899899999999864367530687543323112456457667520015 Q gi|254780795|r 80 PIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKV 159 (316) Q Consensus 80 P~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~ 159 (316) |.+++-.+ ....+++.+.+++|++|..+.. .+.+ ..++ .... T Consensus 77 pnIv~l~~---~~~~~~~~~ivmE~~~gg~L~~-----------~l~~-----~~l~--------e~~~----------- 118 (296) T cd06654 77 PNIVNYLD---SYLVGDELWVVMEYLAGGSLTD-----------VVTE-----TCMD--------EGQI----------- 118 (296) T ss_pred CCCCEEEE---EEEECCEEEEEEECCCCCCHHH-----------HHHH-----CCCC--------HHHH----------- T ss_conf 99890999---9998999999996289994799-----------9871-----6999--------9999----------- Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 522788999999988876521077744402234642256279-6048731621356 Q gi|254780795|r 160 DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 160 ~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) ......+...+..+.+ +++||.|+.|.|||++.+ .+. ++||+.|.. T Consensus 119 -~~i~~qil~aL~ylH~-------~~IiHRDiKp~NILl~~~g~vK-l~DFGla~~ 165 (296) T cd06654 119 -AAVCRECLQALEFLHS-------NQVIHRDIKSDNILLGMDGSVK-LTDFGFCAQ 165 (296) T ss_pred -HHHHHHHHHHHHHHHH-------CCCEECCCCCHHEEECCCCCEE-EEECCCCEE T ss_conf -9999999999999987-------8965021780545898999999-995788856 No 60 >KOG2268 consensus Probab=98.07 E-value=8.1e-06 Score=57.26 Aligned_cols=123 Identities=20% Similarity=0.383 Sum_probs=72.7 Q ss_pred CCEEEEEEEEECCC-CEEEEEEC-------C----------CCCHH-------HHHHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 81200179994399-58999821-------6----------69988-------999999999998532677555100102 Q gi|254780795|r 33 GVENSNFVIQTSKG-TFILTIYE-------K----------RMNEK-------DLPVFIELLHYISRNKLPCPIPIPRND 87 (316) Q Consensus 33 G~~Ntny~v~t~~~-~yiLri~e-------~----------~~~~~-------~l~~~~~ll~~L~~~gipvP~pi~~~~ 87 (316) |-+-.-|.|.-.+| .++||+.+ + |-+.. ....+...|..|.++|+|||+||-. T Consensus 103 GKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfpVPkpiD~-- 180 (465) T KOG2268 103 GKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFPVPKPIDH-- 180 (465) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-- T ss_conf 554524897667778056778764214677765402667617862013467777778999999998759999975456-- Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 67787522451557864788707689989999999986436753068754332311245645766752001552278899 Q gi|254780795|r 88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI 167 (316) Q Consensus 88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (316) +|-++||+.++|-++... |.. .. ..... T Consensus 181 --------~RH~Vvmelv~g~Pl~~v---------------~~v--------------~d---------------~~~ly 208 (465) T KOG2268 181 --------NRHCVVMELVDGYPLRQV---------------RHV--------------ED---------------PPTLY 208 (465) T ss_pred --------CCEEEHHHHHCCCCEEEE---------------EEC--------------CC---------------HHHHH T ss_conf --------531218876445530001---------------114--------------78---------------68999 Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 999998887652107774440223464225627-96048731621356 Q gi|254780795|r 168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) ...+..+.+.+ ..|+||||++--|+++.+ ++++ +|||-.|.. T Consensus 209 ~~lm~~Iv~la----~~GlIHgDFNEFNimv~dd~~i~-vIDFPQmvS 251 (465) T KOG2268 209 DDLMGLIVRLA----NHGLIHGDFNEFNIMVKDDDKIV-VIDFPQMVS 251 (465) T ss_pred HHHHHHHHHHH----HCCCEECCCCHHEEEEECCCCEE-EEECHHHHC T ss_conf 99999999998----75933225305416871489779-963457504 No 61 >cd07836 STKc_Pho85 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 subfamily. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the Probab=98.04 E-value=0.00017 Score=48.79 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=74.5 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 10046681200179994-3995-899982166---998899999999999853267755510010267787522451557 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKR---MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~---~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) ++.|..|.--+.|.+.. .+|+ +.+|+.... ........|+++|..|.. |.+++-.+ +...++..+.+ T Consensus 5 i~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~l~~---~~~~~~~~~iv 76 (284) T cd07836 5 LEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKH-----ENIVRLHD---VIHTESKLMLV 76 (284) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEE T ss_conf 25961285839999998899989999998620023318999999999997799-----89892978---99569989999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|. +.+.+.+ +..-..+ ...... .....+...+..+.+ T Consensus 77 ~E~~~~~------------L~~~l~~-~~~~~~l--------~~~~i~------------~~~~Qil~aL~ylH~----- 118 (284) T cd07836 77 FEYMEKD------------LKKYMDT-HGNRGAL--------DPNTVK------------SFTYQLLKGIAFCHE----- 118 (284) T ss_pred EECCCCC------------HHHHHHH-HCCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH----- T ss_conf 9858998------------8999997-2657899--------999999------------999999999999997----- Q ss_pred CCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 77744402234642256279-604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+ ++. ++||+.|. T Consensus 119 --~gIiHRDlKP~NILl~~~~~vK-L~DFG~a~ 148 (284) T cd07836 119 --NRVLHRDLKPQNLLINKRGELK-LADFGLAR 148 (284) T ss_pred --CCEEEEECCCCEEEECCCCCEE-EEECCCHH T ss_conf --8915421561106998999889-97637313 No 62 >cd06612 STKc_MST1_2 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activ Probab=98.03 E-value=0.00017 Score=48.79 Aligned_cols=139 Identities=13% Similarity=0.171 Sum_probs=79.0 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 10046681200179994-399-5899982166998899999999999853267755510010267787522451557864 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) ++.|..|.--+.|++.. .+| .|.+|+........++..|+++|..+.. |.+++-.+ ...-++..+.+++| T Consensus 8 ~~~IG~G~fg~V~~~~~~~~~~~~AiK~i~~~~~~~~~~~E~~il~~~~H-----pnIv~~~~---~~~~~~~~~lvmEy 79 (256) T cd06612 8 LEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDS-----PYIVKYYG---SYFKNTDLWIVMEY 79 (256) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEEC T ss_conf 15982076919999999899989999998654589999999999986799-----99980999---99989999999978 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. .+ +...+.++ ..... .....+...+..+.+ + T Consensus 80 ~~~g~L~~-----------~l---~~~~~~~~--------e~~v~------------~~~~qi~~al~ylH~-------~ 118 (256) T cd06612 80 CGAGSVSD-----------IM---KITNKTLT--------EEEIA------------AILYQTLKGLEYLHS-------N 118 (256) T ss_pred CCCCCHHH-----------HH---HHHCCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------C T ss_conf 99993999-----------99---98489999--------99999------------999999999999998-------9 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 444022346422562796048731621356 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) ++||.|+.|+|||++++...-|.||+-|.. T Consensus 119 ~iiHRDlKp~NILl~~~~~~Ki~DFGls~~ 148 (256) T cd06612 119 KKIHRDIKAGNILLNEEGQAKLADFGVSGQ 148 (256) T ss_pred CEEEEECCHHHEEECCCCCEEEEECCCCEE T ss_conf 936613588995588999999942768618 No 63 >TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase; InterPro: IPR012811 Three pathways exist for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium favours trehalose, physiological concentrations of trehalose may be much greater than that of maltose, and TreS may act largely in its degradation. This entry describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.. Probab=98.02 E-value=3.2e-05 Score=53.37 Aligned_cols=189 Identities=21% Similarity=0.250 Sum_probs=100.3 Q ss_pred HHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CC-CCCCCCCC-----HH Q ss_conf 9848998605310046681200179994399589998216699889999999999985326-77-55510010-----26 Q gi|254780795|r 16 VQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LP-CPIPIPRN-----DG 88 (316) Q Consensus 16 l~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ip-vP~pi~~~-----~G 88 (316) |..+.+++--.++-++.=-+||+-.| ..++|||++++ +. ..+.-|+++-.||.+.| ++ ||..+=.- ++ T Consensus 167 lA~~~~~~~~~~r~~~AEQSNSs~~~---g~~~VlKL~R~-~~-~G~~PE~Em~r~LT~~g~YaN~~pLLGsv~r~~~~~ 241 (568) T TIGR02457 167 LASLALKEDPEVRLLSAEQSNSSLVV---GDRVVLKLYRK-VE-PGINPEIEMGRYLTEAGEYANVAPLLGSVERVGGDQ 241 (568) T ss_pred HHCCCCCCCCCCCCHHCCCCCHHHHH---HHHHHHHHHHH-CC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC T ss_conf 00446678865311001444125665---54666645311-06-788805689999876116899760001677745887 Q ss_pred H--HHHHHC------------------------------C-C---CEEEEECCCCCCCCCCCHH----------HHHHHH Q ss_conf 7--787522------------------------------4-5---1557864788707689989----------999999 Q gi|254780795|r 89 K--LYGFLC------------------------------K-K---PANIFSFIKGSPLNHISDI----------HCEEIG 122 (316) Q Consensus 89 ~--~~~~~~------------------------------~-k---~~~L~~~i~G~~~~~~~~~----------~~~~lG 122 (316) . .+..++ | . |-.+-+-++|..++-|.+. ..-.+| T Consensus 242 ~p~tl~~LQ~YV~NqGDaW~~t~~~L~R~~~~~~~~~~~~a~~~~ps~~sslmdG~~~~~PE~~~E~~~~~Y~~fag~~G 321 (568) T TIGR02457 242 APHTLGILQGYVENQGDAWRWTLDYLKRYIEEQLSPSANEADAETPSELSSLMDGSASKLPELIAEQILAGYLEFAGLLG 321 (568) T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 35789888754058761678899999999999987403667766777454323675556853455775122899999999 Q ss_pred HHHHHHHHHCCC------CCCCCCCCCCHHHHH-----------HHHHHHHHCCCHHHHHH----------HHHHHHHHH Q ss_conf 986436753068------754332311245645-----------76675200155227889----------999999888 Q gi|254780795|r 123 SMLASMHQKTKN------FHLYRKNTLSPLNLK-----------FLWAKCFDKVDEDLKKE----------IDHEFCFLK 175 (316) Q Consensus 123 ~~La~lH~~~~~------f~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------l~~~l~~~~ 175 (316) +=||.||.++.. |.+.+-.......|- ..+....+.+....+.. |.+.+..+. T Consensus 322 ~RLAelH~aLA~~~~DaaF~P~p~~~~~~~~~~~~~~~q~~r~~~~La~~~~~l~~~~r~~a~~L~~~r~~L~~~l~~l~ 401 (568) T TIGR02457 322 RRLAELHLALAAATEDAAFAPEPISTADARSWVQDMKAQLERALELLAESRDGLEEAARALADKLLAQRKELAAHLRALV 401 (568) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999855899874568898888889999999999999999999987605826669999999999899999985531 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCC Q ss_conf 765210777444022346422562796048731621 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYF 211 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~ 211 (316) +.....|.. =||||||-+-||+-++.+. |||||= T Consensus 402 ~~~~d~l~i-R~HGDFhLGQvL~~~~D~~-lIDFEG 435 (568) T TIGR02457 402 KREIDGLKI-RIHGDFHLGQVLVVQDDAV-LIDFEG 435 (568) T ss_pred HHHHCCCEE-EECCCCCCCEEEEECCCEE-EEECCC T ss_conf 676195111-0003431441566608478-961488 No 64 >cd07865 STKc_CDK9 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participa Probab=98.01 E-value=0.0002 Score=48.23 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=78.1 Q ss_pred CCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHH--HHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHH Q ss_conf 98605310046681200179994-399-589998216--69988--99999999999853267-7555100102677875 Q gi|254780795|r 21 IGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEK--DLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGF 93 (316) Q Consensus 21 lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~--~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~ 93 (316) +++-.-++.|..|.--+.|++.. ..| .+.+|+... ..... ..-.|+.+|+.|...++ +.-.++.+. ...... T Consensus 11 i~~Y~~~~~IG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H~niv~~~~~~~~~-~~~~~~ 89 (310) T cd07865 11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTK-ATPYNR 89 (310) T ss_pred CCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC-CCCCCC T ss_conf 4787776697337284999999999997999999841004326689999999999974799814068899733-645556 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 22451557864788707689989999999986436753068754332311245645766752001552278899999998 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) ..+..+.+++|++|.- +..+.. ....+ ..... ......+...+.. T Consensus 90 ~~~~~~lv~E~~~~~l------------~~~~~~---~~~~~--------~~~~i------------~~i~~Qil~aL~y 134 (310) T cd07865 90 FKGSFYLVFEFCEHDL------------AGLLSN---KNVKF--------TLSEI------------KKVMKQLLNGLYY 134 (310) T ss_pred CCCEEEEEEECCCCCH------------HHHHHH---CCCCC--------CHHHH------------HHHHHHHHHHHHH T ss_conf 6875999996689976------------888863---46898--------99999------------9999999999999 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 8876521077744402234642256279604873162135 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+ .|+||.|+.|.|||++.+...-|+||+.|. T Consensus 135 LH~-------~gIiHRDlKPeNILl~~~~~vKl~DFGla~ 167 (310) T cd07865 135 IHR-------NKILHRDMKAANILITKDGILKLADFGLAR 167 (310) T ss_pred HHH-------CCCCCCCCCHHHEEECCCCCEEEECCCCCE T ss_conf 987-------877516787899688788988982166441 No 65 >cd06658 STKc_PAK5 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is Probab=97.98 E-value=0.00037 Score=46.54 Aligned_cols=155 Identities=16% Similarity=0.258 Sum_probs=84.6 Q ss_pred CCHHHHHHHHHH-CCCCCE----EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCC Q ss_conf 899999999984-899860----5310046681200179994-399-5899982166--998899999999999853267 Q gi|254780795|r 7 PPQKEIQSFVQE-YAIGQL----NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKL 77 (316) Q Consensus 7 ls~~el~~il~~-y~lg~~----~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gi 77 (316) +|.++..+.|+- -..|.. ..++.|..|.--+.|+..- .+| .|.+|+...+ ...+.+..|+.+|..|.. T Consensus 2 ~~~~~~~~~~~~~~~~gd~~~~~~~l~~IG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H--- 78 (292) T cd06658 2 VSHEQFRAALQLVVSPGDPREYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHH--- 78 (292) T ss_pred CCHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC--- T ss_conf 87799999998354999948967407796227781999999899998999999851663239999999999986799--- Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 75551001026778752245155786478870768998999999998643675306875433231124564576675200 Q gi|254780795|r 78 PCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD 157 (316) Q Consensus 78 pvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~ 157 (316) |.+++-.+ ....++..+.+++|++|..+.. + +. + ..++ .... T Consensus 79 --pnIV~l~~---~~~~~~~~yiVmE~~~gG~L~~--------~---i~--~---~~l~--------e~~~--------- 120 (292) T cd06658 79 --ENVVDMYN---SYLVGDELWVVMEFLEGGALTD--------I---VT--H---TRMN--------EEQI--------- 120 (292) T ss_pred --CCCCEEEE---EEEECCEEEEEEECCCCCCHHH--------H---HH--C---CCCC--------HHHH--------- T ss_conf --89891999---9998999999998989991778--------9---87--2---8999--------9999--------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 1552278899999998887652107774440223464225627-9604873162135 Q gi|254780795|r 158 KVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 158 ~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) ......+...++.+.+ +|+||.|+.|.|||++. +++. ++||+.|. T Consensus 121 ---~~i~~qil~aL~yLH~-------~~IiHRDlKpeNILl~~~g~iK-L~DFGla~ 166 (292) T cd06658 121 ---ATVCLSVLRALSYLHN-------QGVIHRDIKSDSILLTSDGRIK-LSDFGFCA 166 (292) T ss_pred ---HHHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCEE-EEECCCCE T ss_conf ---9999999999999997-------8935363771536786899899-97262755 No 66 >cd07861 STKc_CDK1_euk The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 Probab=97.98 E-value=0.00013 Score=49.51 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=75.8 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 10046681200179994-399-589998216699----889999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|+... .+| .+.+|+...... ...+..|+.+|..|.. |.+++..+ ...-.++.+. T Consensus 5 l~~lG~G~fg~V~~~~~~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~l 76 (285) T cd07861 5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQH-----PNIVCLQD---VLMQESRLYL 76 (285) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE T ss_conf 079012879199999988999899999980012344679999999999987799-----99804724---5701997999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|. +++.+..+.+ . ......... .....+...+..+.+ T Consensus 77 V~Ey~~~~------------l~~~l~~~~~---~------~~l~~~~i~------------~~~~ql~~aL~ylH~---- 119 (285) T cd07861 77 VFEFLSMD------------LKKYLDSLPK---G------QYMDSMLVK------------SYLYQILQGILFCHS---- 119 (285) T ss_pred EEECCCCC------------HHHHHHHHCC---C------CCCCHHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 99726887------------7999987425---8------989999999------------999999999999997---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|+|||++.+...-++||+.|. T Consensus 120 ---~~IiHRDiKP~NIlld~~~~vKl~DFG~a~ 149 (285) T cd07861 120 ---RRVLHRDLKPQNLLIDNKGVIKLADFGLAR 149 (285) T ss_pred ---CCCEECCCCCHHEEECCCCCEEEEECCHHH T ss_conf ---993647278211688899988980075277 No 67 >cd06655 STKc_PAK2 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptoti Probab=97.96 E-value=0.00029 Score=47.22 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=78.0 Q ss_pred EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 05310046681200179994-399-589998216--69988999999999998532677555100102677875224515 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ..-++.|..|.--+.|+... ..| .|.+|+... ....+.+..|+.+|..|.. |.+++-.+ ....++..+ T Consensus 21 Y~~~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~ 92 (296) T cd06655 21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKN-----PNIVNFLD---SFLVGDELF 92 (296) T ss_pred EEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEE T ss_conf 3962798038680999999889998999999862008538999999999996799-----89991999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++.. .+.+ ..++ .... ......+...+..+.+ T Consensus 93 ivmEy~~gg~L~~-----------~i~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~--- 133 (296) T cd06655 93 VVMEYLAGGSLTD-----------VVTE-----TCMD--------EAQI------------AAVCRECLQALEFLHA--- 133 (296) T ss_pred EEEECCCCCCHHH-----------HHHH-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9996589992899-----------9870-----6999--------9999------------9999999999999998--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 107774440223464225627-96048731621356 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++. +.+. ++||+.|.. T Consensus 134 ----~~IiHRDlKp~NILl~~~g~vK-l~DFGla~~ 164 (296) T cd06655 134 ----NQVIHRDIKSDNVLLGMDGSVK-LTDFGFCAQ 164 (296) T ss_pred ----CCCCCCCCCHHHEEECCCCCEE-EECCCCCEE T ss_conf ----8874477976877888999999-981888777 No 68 >cd06656 STKc_PAK3 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the b Probab=97.96 E-value=0.00067 Score=44.87 Aligned_cols=138 Identities=15% Similarity=0.232 Sum_probs=76.4 Q ss_pred EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 05310046681200179994-399-589998216--69988999999999998532677555100102677875224515 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ..-++.|..|.--+.|+... .+| .+.+|+... ....+.+..|+.+|..+.. |.+++-.+ ....++..+ T Consensus 21 Y~~~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~---~~~~~~~~~ 92 (297) T cd06656 21 YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKN-----PNIVNYLD---SYLVGDELW 92 (297) T ss_pred EEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 1887897048581999999889998999999873327628999999999986799-----99890999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+.+ ..++ .... ......+...+..+.+ T Consensus 93 iVmEy~~gg~L~~-----------~l~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~--- 133 (297) T cd06656 93 VVMEYLAGGSLTD-----------VVTE-----TCMD--------EGQI------------AAVCRECLQALDFLHS--- 133 (297) T ss_pred EEEECCCCCCHHH-----------HHHC-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9995589992899-----------8751-----6999--------9999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 1077744402234642256279-604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+ .+. ++||+.|. T Consensus 134 ----~~IiHRDlKP~NILl~~~g~vK-L~DFGla~ 163 (297) T cd06656 134 ----NQVIHRDIKSDNILLGMDGSVK-LTDFGFCA 163 (297) T ss_pred ----CCCCCCCCCHHHEEECCCCCEE-EECCCCCE T ss_conf ----8955041881646898999999-98588885 No 69 >cd07846 STKc_CDKL2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, a Probab=97.96 E-value=0.00018 Score=48.53 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=74.6 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 100466812001799943-995-89998216699889----999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEKD----LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~~----l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|+..-. +|+ +.+|++.+...... .-.|+.+|..|.. |.+++..+ +....+..+. T Consensus 6 ~~~iG~G~fg~Vy~~~~~~t~~~vAiK~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~i 77 (286) T cd07846 6 LGLVGEGSYGMVMKCRHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRH-----ENLVNLIE---VFRRKKRLYL 77 (286) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEE T ss_conf 318833708799999988999899999982101567889999999999986799-----79991999---9998998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|... ..+.+...+++ ..... .....+...+..+.+ T Consensus 78 v~E~~~~~~l---------------~~l~~~~~~l~--------~~~i~------------~i~~qil~al~ylH~---- 118 (286) T cd07846 78 VFEFVDHTVL---------------DDLEKYPNGLD--------ESRVR------------KYLFQVLRGIEFCHS---- 118 (286) T ss_pred EEECCCCCCH---------------HHHHHCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 9958998829---------------99986269989--------99999------------999999999999997---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-++||+.|. T Consensus 119 ---~~iiHRDlKpeNILl~~~~~iKl~DFGla~ 148 (286) T cd07846 119 ---HNIIHRDIKPENILVSQSGVVKLCDFGFAR 148 (286) T ss_pred ---CCCEECCCCHHHEEECCCCCEEEEECCCHH T ss_conf ---893526587899678889989983323034 No 70 >cd06639 STKc_myosinIIIB Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a reg Probab=97.95 E-value=0.00019 Score=48.47 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=83.8 Q ss_pred CCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 89999999998489986053100466812001799943-99-5899982166-998899999999999853267755510 Q gi|254780795|r 7 PPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPI 83 (316) Q Consensus 7 ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi 83 (316) ++.+++.....+|.+ ++.|..|.--+.|++... +| .+.+|+..+. ...+++..|+++|+.|.++ |.++ T Consensus 12 ~~~~~~g~p~d~Y~i-----~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~~H----pnIv 82 (291) T cd06639 12 LGLESLGDPTDTWEI-----IETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNH----PNVV 82 (291) T ss_pred EEHHHCCCCCCCEEE-----EEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC----CCEE T ss_conf 649984997534799-----8898237582999999889998999999884005289999999999973179----9988 Q ss_pred CCCHHHHH---HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 01026778---752245155786478870768998999999998643675306875433231124564576675200155 Q gi|254780795|r 84 PRNDGKLY---GFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD 160 (316) Q Consensus 84 ~~~~G~~~---~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~ 160 (316) +-.+ -.. ....+..+.+++|++|.++.. .+..+......++ ..... T Consensus 83 ~~~~-~~~~~~~~~~~~l~ivmE~~~gg~L~~-----------~i~~~~~~~~~l~--------e~~~~----------- 131 (291) T cd06639 83 KFYG-MFYKADKLVGGQLWLVLELCNGGSVTE-----------LVKGLLICGQRLD--------EAMIS----------- 131 (291) T ss_pred EEEE-EEEECCCCCCCEEEEEEECCCCCCHHH-----------HHHHHHHCCCCCC--------HHHHH----------- T ss_conf 9999-999547567871899997689996999-----------9998776079999--------99999----------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 22788999999988876521077744402234642256279-6048731621356 Q gi|254780795|r 161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) .....+...+..+.+ +++||.|+.|.|||++.+ .+ -++||+.|.. T Consensus 132 -~i~~qi~~aL~ylH~-------~~IiHRDlKP~NILl~~~g~v-Kl~DFGls~~ 177 (291) T cd06639 132 -YILYGALLGLQHLHN-------NRIIHRDVKGNNILLTTEGGV-KLVDFGVSAQ 177 (291) T ss_pred -HHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCE-EEECCCEEEE T ss_conf -999999999999987-------893402377477788689988-9822612257 No 71 >cd06657 STKc_PAK4 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability a Probab=97.95 E-value=0.00036 Score=46.61 Aligned_cols=137 Identities=15% Similarity=0.268 Sum_probs=76.4 Q ss_pred EEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 310046681200179994-3995-899982166--998899999999999853267755510010267787522451557 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) .+..|..|.--+.|+... .+|+ |.+|+...+ ...+.+..|+++|..|...+ +++-.+ .....+..+.+ T Consensus 24 ~~~kIG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-----Iv~l~~---~~~~~~~~ylv 95 (292) T cd06657 24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-----VVEMYN---SYLVGDELWVV 95 (292) T ss_pred CCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCCEEE---EEEECCEEEEE T ss_conf 2869622888199999988999899999983056403899999999998679989-----982989---99989999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|..+.. .+. + ..++ ..... .....+...++.+.+ T Consensus 96 mEy~~gG~L~~-----------~~~--~---~~l~--------e~~i~------------~i~~qil~aL~yLH~----- 134 (292) T cd06657 96 MEFLEGGALTD-----------IVT--H---TRMN--------EEQIA------------AVCLAVLKALSVLHA----- 134 (292) T ss_pred EECCCCCCHHH-----------HHH--H---CCCC--------HHHHH------------HHHHHHHHHHHHHHH----- T ss_conf 96769787999-----------998--1---8999--------99999------------999999999999997----- Q ss_pred CCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 77744402234642256279-6048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++.+ ++. ++||+.|.. T Consensus 135 --~~IiHRDiKpeNILl~~~g~iK-L~DFGla~~ 165 (292) T cd06657 135 --QGVIHRDIKSDSILLTHDGRVK-LSDFGFCAQ 165 (292) T ss_pred --CCCEEEECCCHHEEECCCCCEE-EEEEEEEEE T ss_conf --8945322671306785899889-996021366 No 72 >cd07847 STKc_CDKL1_4 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformatio Probab=97.95 E-value=0.00021 Score=48.18 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=73.7 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCC-HH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 100466812001799943-995-89998216699-88---9999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMN-EK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~-~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|.+.-. +|+ +.+|.+..+.. .. ....|+.+|..|.. |.+++-.+ ....++..+. T Consensus 6 ~~~lG~G~fg~V~~~~~~~t~~~vAiK~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~---~~~~~~~~~l 77 (286) T cd07847 6 LGKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKH-----PNLVNLIE---VFRRKRRLHL 77 (286) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE T ss_conf 428413608599999988999899999974002487899999999999987799-----79893999---9956998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.... .+ .. + ..+++ ... . ......+...+..+.+ T Consensus 78 VmE~~~~~~l~--------~l---~~--~--~~~l~--------e~~----~--------~~i~~qll~al~ylH~---- 118 (286) T cd07847 78 VFEYCDHTVLN--------EL---EK--N--PRGVP--------EHQ----I--------KKIIWQTLQAVNFCHK---- 118 (286) T ss_pred EEECCCCCCHH--------HH---HH--C--CCCCC--------HHH----H--------HHHHHHHHHHHHHHHH---- T ss_conf 99658998499--------99---97--3--79989--------999----9--------9999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 119 ---~~iiHRDlKpeNILl~~~~~iKl~DFG~a~ 148 (286) T cd07847 119 ---HNCIHRDVKPENILITKQGQIKLCDFGFAR 148 (286) T ss_pred ---CCCCCCCCCHHHEEECCCCCEEEEECCCCE T ss_conf ---887426455111038789949996412530 No 73 >cd06648 STKc_PAK_II Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since g Probab=97.95 E-value=0.00019 Score=48.47 Aligned_cols=137 Identities=16% Similarity=0.277 Sum_probs=77.1 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 5310046681200179994-399-5899982166--99889999999999985326775551001026778752245155 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ..++.|..|.--+.|+..- .+| .|.+|+...+ ...+.+..|+.+|..|.. |.+++-.+ ....++..+. T Consensus 22 ~~l~~IG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~~~~---~~~~~~~~~i 93 (285) T cd06648 22 DNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQH-----PNIVEMYS---SYLVGDELWV 93 (285) T ss_pred EEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE T ss_conf 788996237691999999889998999999841110139999999999986899-----99982999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++.. .+.+ ..++ .... ......+...+..+.+ T Consensus 94 vmE~~~gg~L~~-----------~i~~-----~~l~--------e~~~------------~~i~~qil~aL~yLH~---- 133 (285) T cd06648 94 VMEFLEGGALTD-----------IVTH-----TRMN--------EEQI------------ATVCLAVLKALSFLHA---- 133 (285) T ss_pred EEECCCCCCHHH-----------HHHC-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 996899991799-----------9873-----8999--------9999------------9999999999999997---- Q ss_pred CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 077744402234642256279-604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+ .+ -++||+.|. T Consensus 134 ---~~IiHRDlKpeNILl~~~g~v-Kl~DFGla~ 163 (285) T cd06648 134 ---QGVIHRDIKSDSILLTSDGRV-KLSDFGFCA 163 (285) T ss_pred ---CCCEECCCCCHHEEECCCCCE-EEEECCCCE T ss_conf ---893525477132688799988-999543203 No 74 >cd06636 STKc_MAP4K4_6 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal e Probab=97.92 E-value=0.00033 Score=46.85 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=79.1 Q ss_pred CCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH----HH Q ss_conf 98605310046681200179994-399-5899982166-99889999999999985326775551001026778----75 Q gi|254780795|r 21 IGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY----GF 93 (316) Q Consensus 21 lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~----~~ 93 (316) .|...-++.|..|.--+.|+..- .+| .+.+|+.+.. ...+++..++++|..+..+. .++.- -+..+ .. T Consensus 15 ~~~Y~~~~~IG~G~fg~Vy~a~~~~tg~~~AiK~i~~~~~~~~~~~~E~~~l~~~~~h~----niv~~-~~~~~~~~~~~ 89 (282) T cd06636 15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHR----NIATY-YGAFIKKSPPG 89 (282) T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC----CEEEE-EEEEEEECCCC T ss_conf 88848888983285829999999899979999998144061999999999999634898----18889-66899704678 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 22451557864788707689989999999986436753068754332311245645766752001552278899999998 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) .++..+.+++|++|..+.. + + +.. ++ +........ .....+...+.. T Consensus 90 ~~~~l~lvmE~~~~g~L~~-----~------l---~~~-~~------~~~~e~~i~------------~~~~qi~~aL~y 136 (282) T cd06636 90 HDDQLWLVMEFCGAGSVTD-----L------V---KNT-KG------NALKEDWIA------------YICREILRGLAH 136 (282) T ss_pred CCCEEEEEEECCCCCCHHH-----H------H---HHH-CC------CCCCHHHHH------------HHHHHHHHHHHH T ss_conf 7888999996899997999-----9------9---872-48------999999999------------999999999999 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 88765210777444022346422562796048731621356 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +.. .++||.|+.|.|||++++...-|+||+.|.. T Consensus 137 lH~-------~~IiHRDlKp~NILl~~~~~iKi~DFGls~~ 170 (282) T cd06636 137 LHA-------HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ 170 (282) T ss_pred HHH-------CCCEEEECCHHHEEECCCCCEEEEECCCCEE T ss_conf 997-------8916623565777887999899975778747 No 75 >cd00180 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation segment of the catalytic domain, sometimes combined with reversible conformational changes in the C-terminal autoregulatory tail. Probab=97.90 E-value=0.00032 Score=46.98 Aligned_cols=137 Identities=19% Similarity=0.279 Sum_probs=74.9 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 0046681200179994-399-5899982166-9988---99999999999853267755510010267787522451557 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.|..|.--+.|+..- .+| .+.+|+.... .+.. .+..|+++|..|.. |.+++-.+ ...-.+..+.+ T Consensus 6 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~iv 77 (256) T cd00180 6 EKLGKGAFGKVYLARDKKTGELVAIKIIKKKKEKKKQVERILREIKILKRLNH-----PNIVKLYD---VFEDEDKLYLV 77 (256) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE T ss_conf 89841878499999998999899999983344898999999999999997799-----69995999---99989999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++... + +.. ..++ .... ......+...+..+.+ T Consensus 78 mEy~~gg~L~~~-----------i---~~~-~~l~--------~~~~------------~~i~~qi~~aL~ylH~----- 117 (256) T cd00180 78 MEYMSGGDLFDL-----------L---KKR-GRLS--------EDEA------------RFYFRQILSGLEYLHS----- 117 (256) T ss_pred EECCCCCCHHHH-----------H---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH----- T ss_conf 978899868999-----------9---876-9999--------9999------------9999999999999998----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 777444022346422562796048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++++...-++||+.|.. T Consensus 118 --~~iiHRDiKp~NILl~~~~~vKL~DFGla~~ 148 (256) T cd00180 118 --KGIIHRDLKPENILLDEDGHVKIADFGLAKQ 148 (256) T ss_pred --CCCEEEECCHHHEEECCCCCEEEEECCCCEE T ss_conf --9967744577987998999899997888657 No 76 >cd07860 STKc_CDK2_3 The catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A comp Probab=97.87 E-value=0.00031 Score=47.03 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=74.2 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 100466812001799943-99-5899982166998----89999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|++... +| .|.+|+....... ..+..|+.+|..|.. |.+++-.+ +..-.++.+. T Consensus 5 l~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~yi 76 (284) T cd07860 5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-----PNIVKLLD---VIHTENKLYL 76 (284) T ss_pred EEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EECCCCEEEE T ss_conf 178523658499999988999899999981221333669999999999986799-----99814610---0444998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|. .. +.+-... ..+++ .... ......+...++.+.+ T Consensus 77 v~E~~~~~------L~------~~~~~~~--~~~~~--------~~~i------------~~~~~Qil~al~yLH~---- 118 (284) T cd07860 77 VFEFLHQD------LK------KFMDASP--LSGIP--------LPLI------------KSYLFQLLQGLAFCHS---- 118 (284) T ss_pred EEECCCCC------HH------HHHHHCC--CCCCC--------HHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 99648987------89------9987525--68999--------9999------------9999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 07774440223464225627-9604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 119 ---~~IiHRDiKPeNILl~~~~~iK-l~DFGla~ 148 (284) T cd07860 119 ---HRVLHRDLKPQNLLINTEGAIK-LADFGLAR 148 (284) T ss_pred ---CCCEEEECCHHHEEECCCCCEE-EEECCCCC T ss_conf ---8936732675664688999899-94357522 No 77 >cd07864 STKc_CDK12 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. C Probab=97.86 E-value=0.00068 Score=44.83 Aligned_cols=145 Identities=12% Similarity=0.182 Sum_probs=72.7 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCC-CCCCCCCCHHHH-HHHHCCCC Q ss_conf 100466812001799943-995-8999821669988----999999999998532677-555100102677-87522451 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLP-CPIPIPRNDGKL-YGFLCKKP 98 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~-~~~~~~k~ 98 (316) ++.|..|.--+.|+.... .|+ |.+|+.......+ ..-.|+++|..|...++- +=..+.+.+... +..-.+.. T Consensus 12 ~~~lG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~~~~ 91 (302) T cd07864 12 IGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAVREIKILRQLNHRSIVNLKEIVTDKQDALDFKKDKGAF 91 (302) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEE T ss_conf 78985263819999998899979999999501022244899999999999706888330467883055432200368759 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|... +.+......++ .... ......+...+..+.+ T Consensus 92 ~iv~E~~~~~l~---------------~~l~~~~~~~~--------e~~~------------~~~~~Qil~gL~yLH~-- 134 (302) T cd07864 92 YLVFEYMDHDLM---------------GLLESGLVHFS--------EDHI------------KSFMKQLLEGLNYCHK-- 134 (302) T ss_pred EEEEECCCCCHH---------------HHHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 999979999669---------------99984678989--------9999------------9999999999999986-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-|+||+.|. T Consensus 135 -----~giiHRDlKPeNILi~~~~~vKl~DFG~a~ 164 (302) T cd07864 135 -----KNFLHRDIKCSNILLNNKGQIKLADFGLAR 164 (302) T ss_pred -----CCCEECCCCHHHEEECCCCCEEEEECCCCE T ss_conf -----994604587698699899988997568751 No 78 >cd07839 STKc_CDK5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiatio Probab=97.83 E-value=0.00084 Score=44.22 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=73.3 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 10046681200179994-3995-899982166998----89999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|++.- ++|+ +.+|+....... .....|+.+|..|.. |.+++..+ .....+..+. T Consensus 5 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~i 76 (284) T cd07839 5 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-----KNIVRLYD---VLHSDKKLTL 76 (284) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EECCCCEEEE T ss_conf 048204728399999988999799999983034646779999999999986799-----99720211---2500997999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.- .. .+.+. .+ ........ .....+...+..+.+ T Consensus 77 vmE~~~~~l------~~------~~~~~----~~-------~~~~~~~~------------~~~~qil~gl~ylH~---- 117 (284) T cd07839 77 VFEYCDQDL------KK------YFDSC----NG-------DIDPEIVK------------SFMFQLLKGLAFCHS---- 117 (284) T ss_pred EEECCCCCH------HH------HHHHH----CC-------CCCHHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 996079778------99------99972----79-------99999999------------999999999999986---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-++||+.|. T Consensus 118 ---~~IiHRDiKpeNILl~~~~~vKL~DFGla~ 147 (284) T cd07839 118 ---HNVLHRDLKPQNLLINKNGELKLADFGLAR 147 (284) T ss_pred ---CCCCCCCCCCCCEEECCCCCEEEEECCCCC T ss_conf ---985712177302688899999995517663 No 79 >cd06609 STKc_MST3_like Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins req Probab=97.83 E-value=0.00056 Score=45.38 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=74.4 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 0046681200179994-399-58999821669988---999999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|..|.--+.|+... .+| .|.+|+.......+ .+..|+.+|..|.. |.+++-.+ ...-++..+.++ T Consensus 7 ~~iG~G~fg~Vy~a~~~~t~~~vAvK~i~~~~~~~~~~~~~~Ei~~l~~l~h-----pnIv~~~~---~~~~~~~~~ivm 78 (274) T cd06609 7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRS-----PYITKYYG---SFLKGSKLWIIM 78 (274) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEE T ss_conf 7982176849999999899989999998167694899999999999986799-----89990999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+.. .+ +. ..++ .... ......+...+..+.+ T Consensus 79 Ey~~gg~L~~-----------~l----~~-~~~~--------e~~~------------~~~~~qi~~aL~ylH~------ 116 (274) T cd06609 79 EYCGGGSCLD-----------LL----KP-GKLD--------ETYI------------AFILREVLLGLEYLHE------ 116 (274) T ss_pred ECCCCCCHHH-----------HH----HC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 7889797999-----------99----70-8999--------9999------------9999999999999986------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-+.||+.|. T Consensus 117 -~~iiHRDlKp~NILl~~~g~vKl~DFG~a~ 146 (274) T cd06609 117 -EGKIHRDIKAANILLSEEGDVKLADFGVSG 146 (274) T ss_pred -CCEEEEECCHHHEEECCCCCEEEEECCCCE T ss_conf -997887746688367789998994578864 No 80 >cd06643 STKc_SLK Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Probab=97.82 E-value=0.0008 Score=44.35 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=73.9 Q ss_pred EECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 00466812001799943-99-58999821669988999---999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|..|.--+.|+.... .| .+.+|+...+ ..+++. .|+++|..|.. |.+++-.+ ....++..+.++ T Consensus 11 ~~iG~G~fg~Vy~a~~~~~~~~~AvK~~~~~-~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~lvm 81 (282) T cd06643 11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTK-SEEELEDYMVEIDILASCDH-----PNIVKLLD---AFYYENNLWILI 81 (282) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEE T ss_conf 5980276839999998899949999997724-88999999999999986799-----89992999---999899899999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+.. .+++....++ ..... .....+...+..+.+ T Consensus 82 E~~~gg~L~~--------------~l~~~~~~l~--------e~~~~------------~i~~qi~~gl~ylH~------ 121 (282) T cd06643 82 EFCAGGAVDA--------------VMLELERPLT--------EPQIR------------VVCKQTLEALNYLHE------ 121 (282) T ss_pred EECCCCCHHH--------------HHHHCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH------ T ss_conf 9379994899--------------9987079999--------99999------------999999999999997------ Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 774440223464225627-96048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +++||.|+.|+|||++. +.+. +.||+.|.. T Consensus 122 -~~iiHRDIKp~NILl~~~g~vK-l~DFGls~~ 152 (282) T cd06643 122 -NKIIHRDLKAGNILFTLDGDIK-LADFGVSAK 152 (282) T ss_pred -CCEEEEECCHHHEEECCCCCEE-EEECCCCEE T ss_conf -8976633666877887999999-960747730 No 81 >cd05610 STKc_MASTL STKc_MASTL: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknow Probab=97.82 E-value=0.00032 Score=46.92 Aligned_cols=144 Identities=21% Similarity=0.294 Sum_probs=77.2 Q ss_pred CCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 98605310046681200179994-3995-899982166--9988---999999999998532677555100102677875 Q gi|254780795|r 21 IGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF 93 (316) Q Consensus 21 lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~ 93 (316) |++..-++.|..|.--+.|++.- ..|+ |.+|+..+. .+.. .+..|.++|..+. .|.+++-.+ ..+ T Consensus 3 I~df~ilk~IG~G~fG~Vyla~~~~~g~~~AiK~l~~~~~~~~~~~~~~~~E~~~l~~~~-----hp~Iv~l~~---~~~ 74 (669) T cd05610 3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSK-----SPFIVHLYY---SLQ 74 (669) T ss_pred CCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEE T ss_conf 012799889641758199999989999899999982788249899999999999998669-----986795999---999 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 22451557864788707689989999999986436753068754332311245645766752001552278899999998 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) -.+..+.+|+|++|..+.. .+ +.. ..++ ..... .....+...+.. T Consensus 75 ~~~~~ylvmEy~~gg~L~~-----------~l---~~~-~~~~--------e~~~~------------~~~~qi~~aL~~ 119 (669) T cd05610 75 SANNVYLVMEYLIGGDVKS-----------LL---HIY-GYFD--------EEMAV------------KYISEVALALDY 119 (669) T ss_pred ECCEEEEEEECCCCCCHHH-----------HH---HHH-CCCC--------HHHHH------------HHHHHHHHHHHH T ss_conf 8999999982789982999-----------99---984-8999--------99999------------999999999999 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 88765210777444022346422562796048731621356 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +.+ .|+||.|+.|.|||++.+...-|.||+-+-. T Consensus 120 lH~-------~gIiHRDiKp~NiLl~~~g~vKl~DFGlSk~ 153 (669) T cd05610 120 LHR-------HGIIHRDLKPDNMLISNEGHIKLTDFGLSKV 153 (669) T ss_pred HHH-------CCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf 997-------8876225780030077899789930474303 No 82 >cd05613 STKc_MSK1_N STKc_MSK1_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the Probab=97.81 E-value=0.00026 Score=47.53 Aligned_cols=136 Identities=21% Similarity=0.296 Sum_probs=71.6 Q ss_pred EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 0046681200179994----399-58999821669---9---88999999999998532677555100102677875224 Q gi|254780795|r 28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +.|..|.--+.|++.. +.| .|.+|+..+.. . .+.+..+.++|.+|..+ |.+++-.+ ..+-++ T Consensus 6 ~~iG~G~fg~V~~~~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~~E~~il~~l~~~----p~Iv~l~~---~~~~~~ 78 (290) T cd05613 6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQS----PFLVTLHY---AFQTDT 78 (290) T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC T ss_conf 79513888399999985327889499999980788401067899999999999854899----96789999---999899 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) +.+.+++|++|..+.. .+.+. ..++ .... ......+...+..+.+ T Consensus 79 ~~ylvmEy~~gg~L~~--------------~l~~~-~~l~--------e~~~------------~~~~~qil~al~ylH~ 123 (290) T cd05613 79 KLHLILDYINGGELFT--------------HLSQR-ERFK--------EQEV------------QIYSGEIVLALEHLHK 123 (290) T ss_pred EEEEEEECCCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH T ss_conf 9999996779988899--------------99874-9999--------9999------------9999999999999998 Q ss_pred HHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 6521077744402234642256279-604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+ .+. ++||+.|. T Consensus 124 -------~~IiHRDiKpeNILl~~~g~ik-l~DFGls~ 153 (290) T cd05613 124 -------LGIIYRDIKLENILLDSNGHVV-LTDFGLSK 153 (290) T ss_pred -------CCCEECCCCHHHCCCCCCCCEE-ECCCCCCE T ss_conf -------8945323663654466899889-83276011 No 83 >cd07829 STKc_CDK_like The catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of Probab=97.80 E-value=0.00055 Score=45.41 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=74.0 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 10046681200179994-399-58999821669988----9999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|++.- .+| .|.+|+.......+ ..-.|+++|..|+. |.+++..+ .....+..+. T Consensus 4 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~h-----~nIv~~~~---~~~~~~~~~i 75 (282) T cd07829 4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKH-----PNIVKLLD---VIYTENKLYL 75 (282) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE T ss_conf 899512769199999998999799999983211403668999999999997799-----99990888---9814998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++| .+ . +.+.+ ....+ ...... .....+...+..+.+ T Consensus 76 vmE~~~~-dL--------~---~~l~~---~~~~l--------~~~~~~------------~~~~Qi~~al~~LH~---- 116 (282) T cd07829 76 VFEYCEM-DL--------K---KYLDK---RPGPL--------SPNLIK------------SIMYQLLRGLAYCHS---- 116 (282) T ss_pred EEECCHH-HH--------H---HHHHH---CCCCC--------CHHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 9957135-78--------9---99983---48999--------999999------------999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++++...-++||+.|. T Consensus 117 ---~~IiHRDIKpeNILl~~~~~iKl~DFGla~ 146 (282) T cd07829 117 ---HRILHRDLKPQNLLINRDGVLKLADFGLAR 146 (282) T ss_pred ---CCEEEEECCHHHEEECCCCCEEECCCCCCE T ss_conf ---995663256676247799998986675533 No 84 >cd06608 STKc_myosinIII_like Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of pho Probab=97.79 E-value=0.0008 Score=44.35 Aligned_cols=147 Identities=17% Similarity=0.230 Sum_probs=77.8 Q ss_pred EEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH----HHHCC Q ss_conf 053100466812001799943-99-5899982166-99889999999999985326775551001026778----75224 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY----GFLCK 96 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~----~~~~~ 96 (316) ..-.+-|..|.--+.|+..-. +| .+.+|+.... ....++..|+++|..|.++ |.+++-. |.++ ....+ T Consensus 8 Y~i~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~E~~il~~l~~H----pnIv~~~-~~~~~~~~~~~~~ 82 (275) T cd06608 8 FELVEVIGTGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIEEEYNILRKYSNH----PNIATFY-GAFIKKGPPGSDD 82 (275) T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCCCEEE-EEEEECCCCCCCC T ss_conf 2886897227383999999989998999998776611399999999999971289----9878598-9997358777688 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) +.+.+++|++|.++. ..+.......+.++ ..... .....+...+..+.+ T Consensus 83 ~~yivmE~~~~G~L~-----------dl~~~~~~~~~~~~--------e~~i~------------~i~~qi~~al~yLH~ 131 (275) T cd06608 83 QLWLVMELCGGGSVT-----------DLVKGLRKKGKRLK--------EEWIA------------YILRETLRGLAYLHE 131 (275) T ss_pred EEEEEEECCCCCCHH-----------HHHHHHHHCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH T ss_conf 799999658999299-----------99999987289999--------99999------------999999999999997 Q ss_pred HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 6521077744402234642256279604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++++...-++||+.|. T Consensus 132 -------~~IiHRDlKp~NILl~~~~~vKl~DFGls~ 161 (275) T cd06608 132 -------NKVIHRDIKGQNILLTKEGEVKLVDFGVSA 161 (275) T ss_pred -------CCEECCCCCHHHEEECCCCCEEEEECCCCE T ss_conf -------997605477799788799989998578874 No 85 >pfam04655 APH_6_hur Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety. Probab=97.78 E-value=0.002 Score=41.77 Aligned_cols=218 Identities=14% Similarity=0.046 Sum_probs=109.8 Q ss_pred CCCCCEEEEEEEEECCC-CEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC Q ss_conf 46681200179994399-58999821669-98899999999999853267755510010267787522451557864788 Q gi|254780795|r 30 IIHGVENSNFVIQTSKG-TFILTIYEKRM-NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG 107 (316) Q Consensus 30 i~~G~~Ntny~v~t~~~-~yiLri~e~~~-~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G 107 (316) ...|...-.+.|.+.+| .-|||+.-.+. ...+. .-..+|.+-...|. .+.+... . +.-+.|++++.| T Consensus 10 ~~~g~~s~V~pV~~~dG~pAvLKl~~p~~~~~~E~-~g~~~L~~w~G~Ga--vrll~~d-~-------~~~AlLLErl~~ 78 (253) T pfam04655 10 VAATHSSLVLPVLRADGTPAVLKLAKPREEIEDER-RGALLLVWWDGRGA--VRLLARD-E-------EGGALLLERADG 78 (253) T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHH-HHHHHHHHCCCCCE--EEEEEEC-C-------CCCHHHHHHCCC T ss_conf 77776258999986899955888358976443568-88999875079871--7885147-8-------523699976069 Q ss_pred -CCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf -70768-----998999999998643675306875433231124-56457667520015522788999999988876521 Q gi|254780795|r 108 -SPLNH-----ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSP-LNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 108 -~~~~~-----~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) .++.. ...+-+..++..+++||.....-.+ ...... .++..++........+.....+........+.... T Consensus 79 ~~~L~~~~~~~~d~eA~~i~~~l~~rL~~p~~~~~p--~~l~~l~~~~~~l~~~~~~~~~~~~~~l~~~aa~~~~~Ll~~ 156 (253) T pfam04655 79 ERSLASLVAEGDDDEATRILAGLLARLHSPRPGPLP--PELRPLEEWAASLFRRAAEAAGAGRARLYVDAAAAAAELLAE 156 (253) T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC T ss_conf 997667303477589999999999997378887899--666479999999987525433763318999999999997258 Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 077744402234642256279604873162135680001989999-8643116888787889999988764188998999 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI-NAWCFDENNTYNPSRGFSILNGYNKVRKISENEL 259 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i-~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~ 259 (316) .-...++|||+|.+|||-.+.+=-=.||= .-..|.+.||+|-.+ |-|.- ....-++.++..-++-....--+..+-. T Consensus 157 ~~~~~lLHGDLHh~NVL~~~~~~WlAIDP-Kgl~Ge~~fd~a~~l~N~~~~-~~~~~~~~~~~~R~~~~~~~~gld~~Rl 234 (253) T pfam04655 157 PGEQRPLHGDLHHENVLAGGRRGWLAIDP-KGLVGEPGFDLANLFYNPDDR-DDLALRPGRVRRRLDLLAEALGLDPERL 234 (253) T ss_pred CCCCEEECCCCCHHHHCCCCCCCCEEECC-CCCCCCHHHCHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCHHHH T ss_conf 77433332556578660589997257788-766775102569987196522-2445658999999999999969899999 Q ss_pred HHH Q ss_conf 999 Q gi|254780795|r 260 QSL 262 (316) Q Consensus 260 ~~l 262 (316) -.| T Consensus 235 ~~W 237 (253) T pfam04655 235 LGW 237 (253) T ss_pred HHH T ss_conf 999 No 86 >cd07866 STKc_BUR1 The catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 subfamily. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen Probab=97.78 E-value=0.00056 Score=45.37 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=73.9 Q ss_pred CEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHC Q ss_conf 605310046681200179994-399-58999821669988----99999999999853267-755510010267787522 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~~~ 95 (316) +..-++.|..|.--+.|++.. .++ .|.+|+...+...+ ....|+++|..|+..++ +.-...... +....... T Consensus 9 ~Y~i~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H~nIi~~~~~~~~~-~~~~~~~~ 87 (311) T cd07866 9 DYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVER-PDKSKRKR 87 (311) T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC-CCCCCCCC T ss_conf 98975698417090999999999998999999860113316689999999999972799822035799973-66544547 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888 Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316) +..+.+++|++|. +.. .++.....++ .... ......+...+..+. T Consensus 88 ~~~~~v~ey~~~d------------l~~---~l~~~~~~l~--------~~~~------------~~i~~qll~al~ylH 132 (311) T cd07866 88 GSVYMVTPYMDHD------------LSG---LLENPSVKLT--------ESQI------------KCYMLQLLEGINYLH 132 (311) T ss_pred CEEEEEECCCCCC------------HHH---HHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHH T ss_conf 6699998156876------------788---9985478999--------9999------------999999999999999 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 76521077744402234642256279604873162135 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) + +|+||.|+.|.|||++++...-++||+.|. T Consensus 133 ~-------~~IiHRDlKPeNILl~~~~~~Kl~DFG~a~ 163 (311) T cd07866 133 E-------NHILHRDIKAANILIDNQGILKIADFGLAR 163 (311) T ss_pred H-------CCCEECCCCHHHEEECCCCCEEECCCCCCE T ss_conf 7-------896011176899568899988985589873 No 87 >cd06647 STKc_PAK_I Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include Probab=97.78 E-value=0.00049 Score=45.76 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=76.5 Q ss_pred EEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 05310046681200179994-399-589998216--69988999999999998532677555100102677875224515 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEK--RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~--~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ..-++.|..|.--+.|+... .+| .|.+|+... ....+.+..|+.+|..|.. |.+++-.+ .....+..+ T Consensus 21 Y~~~~~iG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~ 92 (293) T cd06647 21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKH-----PNIVNYLD---SYLVGDELW 92 (293) T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 0876897048680999999889998999999882007538999999999986799-----89990999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+ ..++ .... ......+...+..+.+ T Consensus 93 ivmEy~~gg~L~-----------~~i~~-----~~l~--------e~~~------------~~i~~qil~aL~ylH~--- 133 (293) T cd06647 93 VVMEYLAGGSLT-----------DVVTE-----TCMD--------EGQI------------AAVCRECLQALEFLHS--- 133 (293) T ss_pred EEEECCCCCCHH-----------HHHHH-----CCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 999678989289-----------99870-----6999--------9999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 134 ----~~IiHRDiKp~NILl~~~g~vKl~DFGla~ 163 (293) T cd06647 134 ----NQVIHRDIKSDNILLGMDGSVKLTDFGFCA 163 (293) T ss_pred ----CCCEECCCCHHHEEECCCCCEEEECCCCCE T ss_conf ----893546687688789999999998288876 No 88 >cd06621 PKc_MAPKK_Pek1_like Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharo Probab=97.77 E-value=0.0012 Score=43.30 Aligned_cols=146 Identities=15% Similarity=0.221 Sum_probs=77.4 Q ss_pred EEEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 053100466812001799943-995-8999821669988---99999999999853267755510010267787522451 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) ...++.|..|.--+.|++.-. +|+ |.+|+.......+ .+..|+.+|..|.. |.+++-.+ ..+..-.+.. T Consensus 3 y~~l~~lG~G~fg~V~~a~~~~~~~~~AiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~-~~~~~~~~~~ 76 (287) T cd06621 3 IVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKS-----PYIVKYYG-AFLDESSSSI 76 (287) T ss_pred CEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-EEECCCCCEE T ss_conf 68985730488909999998999919999998303595899999999999985799-----99990978-9970889989 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|.++.. .+.++......++ .. .. ......+...+..+.+ T Consensus 77 ~ivmEy~~gg~L~~-----------~~~~~~~~~~~~~--------e~----~~--------~~i~~qil~gL~ylH~-- 123 (287) T cd06621 77 GIAMEYCEGGSLDS-----------IYKKVKKRGGRIG--------EK----VL--------GKIAESVLKGLSYLHS-- 123 (287) T ss_pred EEEEECCCCCCHHH-----------HHHHHHHCCCCCC--------HH----HH--------HHHHHHHHHHHHHHHH-- T ss_conf 99995469993999-----------9999987179999--------99----99--------9999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+...-+.||+.|. T Consensus 124 -----~~iiHRDlKp~NILl~~~g~vKl~DFG~s~ 153 (287) T cd06621 124 -----RKIIHRDIKPSNILLTRKGQVKLCDFGVSG 153 (287) T ss_pred -----CCCEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf -----990422167455006799989999785575 No 89 >cd07843 STKc_CDC2L1 The catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 subfamily. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CD Probab=97.77 E-value=0.00076 Score=44.50 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=71.7 Q ss_pred EEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 310046681200179994-399-58999821669988----999999999998532677555100102677875224515 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) -++.|..|.--+.|.+.. .+| .|.+|+.......+ ..-.|+.+|..|.. |.+++-.+ -......++.+ T Consensus 9 il~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~h-----pnIv~~~~-~~~~~~~~~~~ 82 (293) T cd07843 9 KLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQH-----PNIVTVKE-VVVGSNLDKIY 82 (293) T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-EEECCCCCEEE T ss_conf 2478313628099999988999899999980004220417889999999997689-----99415888-76058898799 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.- ... +......++ .... ......+...+..+.+ T Consensus 83 lvmE~~~~dl------~~~---------~~~~~~~~~--------~~~i------------~~i~~qil~aL~yLH~--- 124 (293) T cd07843 83 MVMEYVEHDL------KSL---------METMKQPFL--------QSEV------------KTLMLQLLSGVAHLHD--- 124 (293) T ss_pred EEEECCCCCH------HHH---------HHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9993788878------999---------997489999--------9999------------9999999999999998--- Q ss_pred HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 1077744402234642256279-604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +|+||.|+.|+|||++++ ++. ++||+.|. T Consensus 125 ----~~IiHRDiKPeNILl~~~~~vK-i~DFG~a~ 154 (293) T cd07843 125 ----NWILHRDLKTSNLLLNNRGILK-ICDFGLAR 154 (293) T ss_pred ----CCEEEEECCHHHEEECCCCCEE-EECCCCHH T ss_conf ----8935725675665787899889-92247533 No 90 >PRK10593 hypothetical protein; Provisional Probab=97.76 E-value=6.7e-05 Score=51.33 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=130.6 Q ss_pred CEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHH-HHCCCCEE Q ss_conf 605310046681200179994399589998216699889999999999985326-7755510010267787-52245155 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNK-LPCPIPIPRNDGKLYG-FLCKKPAN 100 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~g-ipvP~pi~~~~G~~~~-~~~~k~~~ 100 (316) ++..++-|++-.--.-|.+..++|+-+-.+-+.-+.......+.-=+.-|++.| +++|.+- |-.++ ...+.-+. T Consensus 15 ~~srve~IsEq~y~~l~~Lyd~~G~~~pl~Arsf~~~G~a~qea~klsmLaR~gtvr~P~VY----g~~~~~q~p~~dvl 90 (297) T PRK10593 15 KLSRVECISEKAYAALWALYDSQGNPMPLMARSFSTPGRAQQEAWKLSMLARSGTVRMPTVY----GVVTHEEHPGPDVL 90 (297) T ss_pred CCHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEECCEEE----EEEEECCCCCCCCH T ss_conf 62022100234377899997059982305676624751889999998887506843213456----87741247764010 Q ss_pred EEECCCCCCCCCC--CHHH----HHHHHHHHHHHHHH-CCCCCCC----CCCCCCHHHHHHHHHHHHHC---CC-H---- Q ss_conf 7864788707689--9899----99999986436753-0687543----32311245645766752001---55-2---- Q gi|254780795|r 101 IFSFIKGSPLNHI--SDIH----CEEIGSMLASMHQK-TKNFHLY----RKNTLSPLNLKFLWAKCFDK---VD-E---- 161 (316) Q Consensus 101 L~~~i~G~~~~~~--~~~~----~~~lG~~La~lH~~-~~~f~~~----r~~~~~~~~~~~~~~~~~~~---~~-~---- 161 (316) |++++.|.+.+.+ |++- +.++-+.|=..|.. +.|+... .+|.+ +.|.+...+-+... .+ . T Consensus 91 LmErL~Gvsveap~rtp~rwe~l~eqiveglLawHr~DS~Gcvg~vdstqen~w-~~wyqqrveVLw~tL~~~~~~~ltm 169 (297) T PRK10593 91 LLERLRGVSVEAPARTPERWEQLKDQIVEGLLAWHRQDSRGCVGAVDSTQENLW-PSWYQQRVEVLWTTLNQFNNTGLTM 169 (297) T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 446751886557766878999999999999988773235575056631200456-8999999999999987217878761 Q ss_pred HHHHHHHHHHHHHHHH-HHHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCH Q ss_conf 2788999999988876-52107774440223464225627--96048731621356800019899998643116888787 Q gi|254780795|r 162 DLKKEIDHEFCFLKES-WPKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNP 238 (316) Q Consensus 162 ~~~~~l~~~l~~~~~~-~~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~ 238 (316) ..+..+-..-+-+... .+-+-+..+||||++..|+|++. +++.|.+|=+.+.+.|+-|||=- +| + ... T Consensus 170 ~Dr~~L~r~r~~l~~lf~~fnd~~vlVHgn~~LrsmLkD~rSdqllaml~Pg~mlwapREyeLfr----L~--d-~~~-- 240 (297) T PRK10593 170 QDRRILFRTRECLPALFEGFNDNCVLVHGNFCLRSMLKDPRSDQLLAMVGPGLMLWAPREYELFR----LM--D-NGL-- 240 (297) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCHHEEEE----CC--C-CCC-- T ss_conf 57899999898999996367998189867601998855830455888548754345632000121----13--5-787-- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999988764188998999999999999999999999998760 Q gi|254780795|r 239 SRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQN 283 (316) Q Consensus 239 ~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~ 283 (316) ...++.-|.+..|+++.= ..|-|+-.|||-.. T Consensus 241 --~~~Ll~~YlqkAPv~E~F-----------~~RRwly~LWd~v~ 272 (297) T PRK10593 241 --AEQLLWRYLQKAPVAESF-----------IWRRWLYVLWDEVA 272 (297) T ss_pred --CHHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHH T ss_conf --537899998619317889-----------99999999999999 No 91 >cd07841 STKc_CDK7 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates Probab=97.75 E-value=0.00071 Score=44.70 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=71.1 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CC--HHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 0046681200179994-399-5899982166-99--889----9999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MN--EKD----LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~--~~~----l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +-|..|.--+.|++.. .+| .|.+|+.... .. .+. .-.|+++|..|.. |.+++..+ +...++.. T Consensus 6 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~rEi~~l~~l~h-----pnIv~~~~---~~~~~~~~ 77 (298) T cd07841 6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKH-----PNIIGLLD---VFGHKSNI 77 (298) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEE T ss_conf 49532728399999989999899999997314345667767899999999997599-----99664999---99889999 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|. .... +. + ... ........ .....+...++.+.+ T Consensus 78 ~iVmEy~~g~------L~~~------l~--~---~~~------~l~e~~~~------------~~~~Qil~al~ylH~-- 120 (298) T cd07841 78 NLVFEFMETD------LEKV------IK--D---KSI------VLTPADIK------------SYMLMTLRGLEYLHS-- 120 (298) T ss_pred EEEEECCCCC------HHHH------HH--H---CCC------CCCHHHHH------------HHHHHHHHHHHHHHH-- T ss_conf 9999578998------8999------87--2---388------99999999------------999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 21077744402234642256279-6048731621356 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++.+ ++ -++||+.|+. T Consensus 121 -----~~iiHRDIKPeNILl~~~g~v-Kl~DFG~a~~ 151 (298) T cd07841 121 -----NWILHRDLKPNNLLIASDGVL-KLADFGLARS 151 (298) T ss_pred -----CCEEECCCCHHHEEECCCCCE-EEEECCEEEE T ss_conf -----892403157788568789998-9836332356 No 92 >cd06641 STKc_MST3 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Probab=97.75 E-value=0.0006 Score=45.16 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=75.8 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +.++.|..|.--+.|+... ..|+ +.+|+....... ..+..|+.+|..|.. |.+++-.+ ...-+++.+ T Consensus 7 ~~l~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~ 78 (277) T cd06641 7 TKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-----PYVTKYYG---SYLKDTKLW 78 (277) T ss_pred EEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 9858960387809999998999979999998379784799999999999986799-----88993999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++. .+ + .. + + ...... ......+...+..+.+ T Consensus 79 ivmEy~~gg~l~--------~~---~---~~---~-~------l~e~~~------------~~~~~qi~~aL~ylH~--- 119 (277) T cd06641 79 IIMEYLGGGSAL--------DL---L---EP---G-P------LDETQI------------ATILREILKGLDYLHS--- 119 (277) T ss_pred EEEECCCCCCHH--------HH---H---HC---C-C------CCHHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 999799979699--------99---8---54---9-9------899999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||+++ +.+. ++||+.|. T Consensus 120 ----~~iiHRDlKp~NILl~~~~~vK-l~DFGla~ 149 (277) T cd06641 120 ----EKKIHRDIKAANVLLSEHGEVK-LADFGVAG 149 (277) T ss_pred ----CCCCCEECCHHHEEECCCCCEE-EEECCCCE T ss_conf ----7981002453556887999999-94367840 No 93 >cd07833 STKc_CDKL The catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learn Probab=97.74 E-value=0.00059 Score=45.21 Aligned_cols=138 Identities=12% Similarity=0.224 Sum_probs=75.7 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 100466812001799943-995-8999821669988----9999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|++.-. +|+ +.+|++....... .+..|+.+|..|.. |.+++-.+ ....++..+. T Consensus 6 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~f~~~~~~~l 77 (288) T cd07833 6 LGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRH-----ENIVNLKE---AFRRKGRLYL 77 (288) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE T ss_conf 239741608699999988999899999987233788999999999999986799-----99855989---9838999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) ++++++|.... .+.+...++ ...... .....+...+..+.+ T Consensus 78 VmE~~~~~l~~---------------~~~~~~~~l--------~~~~i~------------~i~~qll~aL~yLH~---- 118 (288) T cd07833 78 VFEYVERTLLE---------------LLEASPGGL--------PPDAVR------------SYIWQLLQAIAYCHS---- 118 (288) T ss_pred EEECCCCCHHH---------------HHHHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 99377997599---------------999767998--------999999------------999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 0777444022346422562796048731621356 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .|+||.|+.|.|+|++.+...-++||+.|.. T Consensus 119 ---~~iiHRDiKpeNILl~~~~~iKl~DFG~a~~ 149 (288) T cd07833 119 ---HNIIHRDIKPENILVSESGVLKLCDFGFARA 149 (288) T ss_pred ---CCCCCCCCCHHHEEECCCCCEEEEECCCCEE T ss_conf ---8846166778887888899889800555400 No 94 >cd06644 STKc_STK10_LOK Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Probab=97.74 E-value=0.002 Score=41.78 Aligned_cols=136 Identities=20% Similarity=0.269 Sum_probs=75.4 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 100466812001799943-99-5899982166998899---999999999853267755510010267787522451557 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) ++.|..|.--+.|++... +| .+.+|+.+.+ +..++ ..|+++|..|.. |.+++-.+ ....+++.+.+ T Consensus 17 ~~~lG~G~fg~Vy~a~~~~t~~~~A~K~i~~~-~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~iv 87 (292) T cd06644 17 IGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYMVEIEILATCNH-----PYIVKLLG---AFYWDGKLWIM 87 (292) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCC-CHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE T ss_conf 36981188919999998899969999998717-99999999999999987799-----99990989---99989989999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|..+.. .+ .....+++ .... ......+...+..+.+ T Consensus 88 mE~~~gg~L~~-----------~~---~~~~~~l~--------e~~~------------~~i~~qil~al~ylH~----- 128 (292) T cd06644 88 IEFCPGGAVDA-----------IM---LELDRGLT--------EPQI------------QVICRQMLEALQYLHS----- 128 (292) T ss_pred EECCCCCCHHH-----------HH---HHHCCCCC--------HHHH------------HHHHHHHHHHHHHHHH----- T ss_conf 98179983999-----------99---97179989--------9999------------9999999999999997----- Q ss_pred CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 7774440223464225627-9604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++. +.+. ++||+.|+ T Consensus 129 --~~IiHRDlKp~NILl~~~g~vK-l~DFGls~ 158 (292) T cd06644 129 --MKIIHRDLKAGNVLLTLDGDIK-LADFGVSA 158 (292) T ss_pred --CCCEECCCCHHHEEECCCCCEE-EEECCCCE T ss_conf --9916444876758887999899-96688864 No 95 >cd05611 STKc_Rim15_like STKc_Rim15_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stati Probab=97.73 E-value=0.0011 Score=43.36 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=70.4 Q ss_pred EECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 0046681200179994-3995-899982166--9988999---9999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|+... .+|+ |.+|++.+. .....+. .+...|.. ...-|.+++-.+ ...-++..+. T Consensus 2 ~~iG~G~fg~V~~a~~~~t~~~~AiK~i~~~~~~~~~~~~~~~~e~~~~~~----~~~hpnIv~~~~---~~~~~~~~~l 74 (260) T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMI----QGESPYVAKLYY---SFQSKDYLYL 74 (260) T ss_pred CCCCCCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCEEEE T ss_conf 643558481999999889998999999825775466799999999999997----379995756999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. +.+.+. ..++ ..... .....+...+..+.+ T Consensus 75 vmEy~~gg~L~-----------~~i~~~----~~l~--------e~~~~------------~~~~qil~al~ylH~---- 115 (260) T cd05611 75 VMEYLNGGDCA-----------SLIKTL----GGLP--------EDWAK------------QYIAEVVLGVEDLHQ---- 115 (260) T ss_pred EEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 98388998799-----------999874----9999--------99999------------999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC Q ss_conf 07774440223464225627960487316213568 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCND 215 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~ 215 (316) +|+||.|+.|+|||++.+...-++||+.|... T Consensus 116 ---~~IiHRDiKpeNILl~~~~~~Kl~DFGls~~~ 147 (260) T cd05611 116 ---RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNG 147 (260) T ss_pred ---CCEECCCCCHHHEEECCCCCEEEEECCCCCCC T ss_conf ---89050666653466879998999517878517 No 96 >cd07835 STKc_CDK1_like The catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1 Probab=97.73 E-value=0.00073 Score=44.61 Aligned_cols=138 Identities=18% Similarity=0.196 Sum_probs=72.2 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 10046681200179994-3995-899982166998----89999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|+... .+|+ +.+|+....... ..+-.|+.+|..|.. |.+++-.+ +..-+++.+. T Consensus 4 ~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~i 75 (283) T cd07835 4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNH-----PNIVRLLD---VVHSENKLYL 75 (283) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE T ss_conf 579413718299999988999799999981001345679999999999987799-----99830635---4600998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|. . . +.+-+. .... ...... ......+...+..+.+ T Consensus 76 v~E~~~~~------L---~---~~~~~~----~~~~------~~~~~~------------~~~~~qil~al~ylH~---- 117 (283) T cd07835 76 VFEFLDLD------L---K---KYMDSS----PLTG------LDPPLI------------KSYLYQLLQGIAYCHS---- 117 (283) T ss_pred EEECCCCC------H---H---HHHHHC----CCCC------CCHHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 99768987------8---9---999863----5789------899999------------9999999999999997---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+...-++||+.|. T Consensus 118 ---~~IiHRDiKp~NILl~~~~~iKl~DFGla~ 147 (283) T cd07835 118 ---HRVLHRDLKPQNLLIDREGALKLADFGLAR 147 (283) T ss_pred ---CCCEECCCCCCCEEECCCCCEEEEECCCHH T ss_conf ---893664077200688899988998767322 No 97 >cd07848 STKc_CDKL5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations a Probab=97.72 E-value=0.00087 Score=44.13 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=73.5 Q ss_pred EECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 0046681200179994-3995-8999821669988----99999999999853267755510010267787522451557 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +-|..|.--+.|++.- .+|+ |.+|++....... .+-.|+.+|..|... .+++-.+ .....+..+.+ T Consensus 7 ~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~h~-----nIv~l~~---~f~~~~~~~lV 78 (287) T cd07848 7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE-----NIVELKE---AFRRRGKLYLV 78 (287) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEEE---EEEECCEEEEE T ss_conf 796417486999999889998999999874005979999999999999867998-----9873989---99989999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.... . +.....+++ . +.+. .....+...+..+.+ T Consensus 79 mE~~~~~ll~-----~----------~~~~~~~~~--------~-------~~i~-----~~~~qil~al~ylH~----- 118 (287) T cd07848 79 FEYVEKNMLE-----L----------LEEMPNGVP--------P-------EKVR-----SYIYQLIKAIHWCHK----- 118 (287) T ss_pred EECCCCCHHH-----H----------HHHCCCCCC--------H-------HHHH-----HHHHHHHHHHHHHHH----- T ss_conf 9758998199-----9----------986448999--------9-------9999-----999999999999998----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||.|+.|.|||++.+...-++||+.|. T Consensus 119 --~~IiHRDiKPeNILl~~~~~iKl~DFG~a~ 148 (287) T cd07848 119 --NDIVHRDIKPENLLISHNDVLKLCDFGFAR 148 (287) T ss_pred --CCCCCCCCCHHHEEECCCCCEEEECCCCCE T ss_conf --892405677899788889988981376444 No 98 >cd06620 PKc_MAPKK_Byr1_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis Probab=97.71 E-value=0.0019 Score=41.92 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=75.4 Q ss_pred EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 53100466812001799943-995-899982166998---8999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +-++.|..|.--+.|++... +|+ +++|+....... ..+..|+.+|..|.. |.+++-.+ .....+..+ T Consensus 8 ~il~~iG~G~fG~V~~a~~~~~~~~~A~K~~~~~~~~~~~~~~~~Ei~il~~l~h-----p~IV~l~~---~~~~~~~~~ 79 (284) T cd06620 8 ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRS-----PYIVSFYG---AFLNENNIC 79 (284) T ss_pred EEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 8988851289919999998799969999998530598999999999999986799-----99993999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. + +.+-+ .+ ...... .....+...+..+... T Consensus 80 ivmEy~~~g~L~~-----~------~~~~~----~l--------~e~~~~------------~~~~qi~~~l~ylH~~-- 122 (284) T cd06620 80 MCMEFMDCGSLDR-----I------YKKGG----PI--------PVEILG------------KIAVAVVEGLTYLYNV-- 122 (284) T ss_pred EEEECCCCCCHHH-----H------HHHCC----CC--------CHHHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 9996579997999-----9------98659----99--------999999------------9999999999999871-- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||.|+.|.|||++++...-++||+.+. T Consensus 123 ----~~IvHRDlKp~NILl~~~~~vKl~DFG~s~ 152 (284) T cd06620 123 ----HRIMHRDIKPSNILVNSRGQIKLCDFGVSG 152 (284) T ss_pred ----CCEEECCCCCCCCEECCCCCEEEEECCCCC T ss_conf ----898632268766107799999996387774 No 99 >cd05572 STKc_cGK_PKG STKc_cGK_PKG: Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble pr Probab=97.71 E-value=0.00089 Score=44.07 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=69.7 Q ss_pred CCCEEEEEEEEE-CCC-CEEEEEECCC-C-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 681200179994-399-5899982166-9-9---8899999999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQT-SKG-TFILTIYEKR-M-N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t-~~~-~yiLri~e~~-~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|++.. .+| .|.+|+..+. . + ...+..|+++|..|.. |.+++-.+ ..+-.+..+.+++| T Consensus 3 ~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~l~~---~~~~~~~~yivmE~ 74 (262) T cd05572 3 VGGFGRVELVQYKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNS-----PFIVRLYR---TFKDKKYIYFLMEY 74 (262) T ss_pred CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEEC T ss_conf 78366999999889998999999857886686799999999999987799-----89997899---99989999999927 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+.. .+... ..++ .... ......+...++.+.+ + T Consensus 75 ~~gg~L~~--------------~i~~~-~~l~--------e~~~------------~~~~~qil~al~ylH~-------~ 112 (262) T cd05572 75 CLGGELWT--------------ILRDR-GLLD--------EYTA------------RFYTACVVEAFEYLHN-------R 112 (262) T ss_pred CCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-------C T ss_conf 99989899--------------99984-9999--------9999------------9999999999999997-------8 Q ss_pred CEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 44402234642256279-604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) |+||.|+.|.|+|++.+ .+. ++||+.|. T Consensus 113 ~IiHRDiKpeNILi~~~g~vK-l~DFG~a~ 141 (262) T cd05572 113 GIIYRDLKPENLLLDSNGYVK-LVDFGFAK 141 (262) T ss_pred CCEEEECCCCCCCCCCCCCEE-ECCCCEEE T ss_conf 947605687541325799988-64046006 No 100 >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily. Probab=97.71 E-value=0.0016 Score=42.37 Aligned_cols=126 Identities=20% Similarity=0.293 Sum_probs=66.9 Q ss_pred EEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC Q ss_conf 1799943-99-5899982166998---89999999999985326775551001026778752245155786478870768 Q gi|254780795|r 38 NFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNH 112 (316) Q Consensus 38 ny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~ 112 (316) .|++... +| .|.+|+....... +.+..|+++|..|.. |.+++..+ ....++..+.+++|++|.++.. T Consensus 5 Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~h-----~niv~~~~---~~~~~~~~~ivmEy~~~gsL~~ 76 (244) T smart00220 5 VYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKH-----PNIVRLYD---VFEDEDKLYLVMEYCDGGDLFD 76 (244) T ss_pred EEEEEECCCCCEEEEEEEEHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCCCE---EEEECCEEEEEEECCCCCCHHH T ss_conf 999999899989999998555296899999999999997799-----29997334---9998999999996889993899 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC Q ss_conf 99899999999864367530687543323112456457667520015522788999999988876521077744402234 Q gi|254780795|r 113 ISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLF 192 (316) Q Consensus 113 ~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~ 192 (316) .+ ... ..+ ..... ......+...+..+.+ +|++|+|+. T Consensus 77 -----------~i---~~~-~~l--------~~~~i------------~~~~~qi~~gl~ylH~-------~~ivHrDiK 114 (244) T smart00220 77 -----------LL---KKR-GRL--------SEDEA------------RFYARQILSALEYLHS-------NGIIHRDLK 114 (244) T ss_pred -----------HH---HHC-CCC--------CHHHH------------HHHHHHHHHHHHHHHH-------CCEEECCCC T ss_conf -----------99---876-999--------99999------------9999999999999998-------992524366 Q ss_pred CCCEEECCC-CCEEEECCCCCCC Q ss_conf 642256279-6048731621356 Q gi|254780795|r 193 PDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 193 ~~NiL~~~~-~i~giIDF~~~~~ 214 (316) |+|||++++ ++. +.||+.|.. T Consensus 115 p~NIli~~~~~iK-l~DFG~a~~ 136 (244) T smart00220 115 PENILLDEDGHVK-LADFGLARQ 136 (244) T ss_pred HHHEEECCCCCEE-EEECCCCEE T ss_conf 5637985899989-987461267 No 101 >cd06606 STKc_MAPKKK Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included Probab=97.71 E-value=0.00057 Score=45.32 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=70.8 Q ss_pred ECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 0466812001799943-99-5899982166-9988---999999999998532677555100102677875224515578 Q gi|254780795|r 29 PIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) -|..|.--+.|++... +| .|.+|+.... .+.. .+..|+.+|..|+. |.+|+-.+ . ...-.+..+.++ T Consensus 7 ~IG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~h-----pnIv~~~~-~-~~~~~~~~~lvm 79 (259) T cd06606 7 LLGRGSFGSVYLALSKDTGELVAVKSVELSSDSEEELESLEREIRILSKLQH-----PNIVRYYG-C-EVTEENTLNIFM 79 (259) T ss_pred EEECCCCEEEEEEEECCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-E-EEECCCEEEEEE T ss_conf 9631899299999999999899999984310898999999999999987799-----89807989-9-994798899999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|.++.. . +.+- ..++ .... ......+...+..+.+ T Consensus 80 Ey~~~g~L~~-----~------i~~~----~~~~--------e~~~------------~~~~~qi~~al~ylH~------ 118 (259) T cd06606 80 EYVSGGSLAS-----L------LKKF----GKLP--------EPVI------------RRYTRQILEGLAYLHS------ 118 (259) T ss_pred ECCCCCCHHH-----H------HHHC----CCCC--------HHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 7899988999-----9------9865----9999--------9999------------9999999999999997------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+...-|+||+.|. T Consensus 119 -~~iiHrDlKp~NILl~~~~~iKl~DFGla~ 148 (259) T cd06606 119 -NGIVHRDIKGANILLDSDGVVKLADFGCAK 148 (259) T ss_pred -CCEEECCCCHHHEEECCCCCEEEEECCCEE T ss_conf -999844038899698789989999878248 No 102 >cd06637 STKc_TNIK Serine/threonine kinases (STKs),Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytos Probab=97.71 E-value=0.0012 Score=43.21 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=79.5 Q ss_pred CCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH----HH Q ss_conf 8605310046681200179994-3995-89998216-6998899999999999853267755510010267787----52 Q gi|254780795|r 22 GQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG----FL 94 (316) Q Consensus 22 g~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~----~~ 94 (316) |...-++.|..|.--+.|+... ..|+ +.+|+... ....+++..++++|..+..+.. +... .|..+. .. T Consensus 6 g~y~~~~~IG~G~fg~Vy~a~~~~~~~~~AiK~i~~~~~~~~~~~~E~~~l~~~~~h~n-i~~~----~~~~~~~~~~~~ 80 (272) T cd06637 6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN-IATY----YGAFIKKNPPGM 80 (272) T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-EEEE----EEEEEECCCCCC T ss_conf 88698779922878299999998999799999986687869999999999985659980-7489----999996578887 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) ++..+.+++|++|.++. ..+ +. .++. ........ .....+...+..+ T Consensus 81 ~~~~~ivmE~~~~G~L~-----------~~l---~~-~~~~------~~~e~~i~------------~i~~qi~~gl~yl 127 (272) T cd06637 81 DDQLWLVMEFCGAGSVT-----------DLI---KN-TKGN------TLKEEWIA------------YICREILRGLSHL 127 (272) T ss_pred CCEEEEEEECCCCCCHH-----------HHH---HH-CCCC------CCCHHHHH------------HHHHHHHHHHHHH T ss_conf 88899999588999799-----------999---87-1689------99999999------------9999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 8765210777444022346422562796048731621356 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .+ .++||.|+.|.|||++++...-|+||+.|.. T Consensus 128 H~-------~~iiHRDlKp~NILl~~~~~vKi~DFGls~~ 160 (272) T cd06637 128 HQ-------HKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ 160 (272) T ss_pred HH-------CCCCCCCCCHHHEEECCCCCEEEEECCCCEE T ss_conf 98-------9915674678998987999899985888658 No 103 >PTZ00263 protein kinase A catalytic subunit; Provisional Probab=97.70 E-value=0.00069 Score=44.78 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=77.9 Q ss_pred CCCCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH Q ss_conf 89986053100466812001799943-99-58999821669--988---9999999999985326775551001026778 Q gi|254780795|r 19 YAIGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLY 91 (316) Q Consensus 19 y~lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~ 91 (316) +.|.+..-++.|..|.--..|++... +| .|.+|+..++. ... .+..|..+|..|.. |.+++..+ . T Consensus 15 ~~l~dyei~~~LG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~H-----p~Iv~l~~---~ 86 (329) T PTZ00263 15 WKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSH-----PFIVNMMC---S 86 (329) T ss_pred CCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---E T ss_conf 654063898897327380999999989998999999837884598999999999999997799-----89890999---9 Q ss_pred HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 75224515578647887076899899999999864367530687543323112456457667520015522788999999 Q gi|254780795|r 92 GFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEF 171 (316) Q Consensus 92 ~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 171 (316) ..-.+..+.+++|++|..+. ..+.+. ..++ ..... .....+...+ T Consensus 87 f~~~~~lylvmEy~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL 131 (329) T PTZ00263 87 FQDENRVYFLLEFVVGGELF--------------THLRKA-GRFP--------NDVAK------------FYHAELVLAF 131 (329) T ss_pred EEECCEEEEEEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHH T ss_conf 99899999999868998589--------------999764-8999--------99999------------9999999999 Q ss_pred HHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 988876521077744402234642256279604873162135 Q gi|254780795|r 172 CFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 172 ~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+.+ +++||.|+.|.|||++++...-++||+.|. T Consensus 132 ~yLH~-------~~IiHRDLKPeNILl~~~g~vKL~DFGlak 166 (329) T PTZ00263 132 EYLHS-------KDIIYRDLKPENLLLDNKGHVKVTDFGFAK 166 (329) T ss_pred HHHHH-------CCCEECCCCCCCEEECCCCCEEECCHHHHH T ss_conf 99997-------888604335432467479988623405542 No 104 >cd07838 STKc_CDK4_6_like The catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are Probab=97.70 E-value=0.0011 Score=43.39 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=73.3 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CCC Q ss_conf 10046681200179994-399-5899982166998----899999999999853267755510010267787522--451 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC--KKP 98 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~--~k~ 98 (316) ++.|..|.--+.|.+.- .+| .|.+|+....... ...-.|+.+|..|... ..|.+++..+--...... ... T Consensus 4 ~~~lG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~l~~~--~HpnIv~~~~~~~~~~~~~~~~~ 81 (287) T cd07838 4 LAEIGEGAYGTVYKARDLHDGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESF--EHPNIVRLLDVCHGPRTDRELKL 81 (287) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEECCCCCCCCEE T ss_conf 8997237080999999889997999999820102105589999999999976265--99989889999830467777469 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|. .. ..+.+ | + ......... ......+...+..+.+ T Consensus 82 ~lvmE~~~~d------L~------~~l~~-~------~---~~~~~e~~i------------~~~~~qil~al~yLH~-- 125 (287) T cd07838 82 TLVFEHVDQD------LA------TYLSK-C------P---KPGLPPETI------------KDLMRQLLRGLDFLHS-- 125 (287) T ss_pred EEEEECCCCC------HH------HHHHH-C------C---CCCCCHHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 9999379988------99------99986-6------6---789799999------------9999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-++||+.|. T Consensus 126 -----~gIiHRDlKpeNIll~~~~~iKl~DFGla~ 155 (287) T cd07838 126 -----HRIVHRDLKPQNILVTSDGQVKIADFGLAR 155 (287) T ss_pred -----CCEEECCCCHHHEEECCCCCEEECCCCCCE T ss_conf -----995546277899798799988971466454 No 105 >cd06640 STKc_MST4 Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Probab=97.70 E-value=0.0012 Score=43.16 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=75.8 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ..++.|..|.--+.|+... ..|+ +.+|+....... ..+..|+.+|..|.. |.+++-.+ ...-+++.+ T Consensus 7 ~~l~~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~ 78 (277) T cd06640 7 TKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-----PYVTKYYG---SYLKGTKLW 78 (277) T ss_pred EEEEEECCCCCCEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 9889971388909999998999979999998678784799999999999986799-----88894999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+ . . ..++ .... ......+...+..+.+ T Consensus 79 ivmEy~~gg~l~~-----------~i---~-~-~~~~--------e~~~------------~~~~~qi~~aL~ylH~--- 119 (277) T cd06640 79 IIMEYLGGGSALD-----------LL---R-A-GPFD--------EFQI------------ATMLKEILKGLDYLHS--- 119 (277) T ss_pred EEEECCCCCCHHH-----------HH---H-C-CCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9997999793999-----------98---6-3-9999--------9999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+...-++||+.|. T Consensus 120 ----~~iiHRDiKp~NILl~~~g~vKl~DFGla~ 149 (277) T cd06640 120 ----EKKIHRDIKAANVLLSEQGDVKLADFGVAG 149 (277) T ss_pred ----CCCCCCCCCHHHEEECCCCCEEEEECCCCC T ss_conf ----798233456366047799999996387651 No 106 >cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s Probab=97.69 E-value=0.00048 Score=45.82 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=72.9 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCCCCCCCCC-CH Q ss_conf 99848998605310046681200179994-399-5899982166-998---89999999999985326775551001-02 Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLPCPIPIPR-ND 87 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gipvP~pi~~-~~ 87 (316) ++++|.+ ++.|..|.--+.|+..- ..| .+.+|+..+. .+. ..+..|+.+|..|...+|- ..+.. .. T Consensus 15 v~~RY~i-----~~~LG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~hpnIV--~~~~~f~~ 87 (355) T cd07874 15 VLKRYQN-----LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNII--SLLNVFTP 87 (355) T ss_pred HHHCEEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCC--EEEEEEEC T ss_conf 2016188-----1695216184999999889998999999892454979999999999999867996989--19899841 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 67787522451557864788707689989999999986436753068754332311245645766752001552278899 Q gi|254780795|r 88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI 167 (316) Q Consensus 88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (316) .+.+.. .+..+.++++++|... ..+ + ..++ ..... .....+ T Consensus 88 ~~~~~~-~~~~yivmE~~~~~l~--------~~~-~---------~~l~--------~~~i~------------~i~~qi 128 (355) T cd07874 88 QKSLEE-FQDVYLVMELMDANLC--------QVI-Q---------MELD--------HERMS------------YLLYQM 128 (355) T ss_pred CCCCCC-CCCEEEEEEECCCCHH--------HHH-H---------HCCC--------HHHHH------------HHHHHH T ss_conf 774211-5617999970599889--------998-7---------3499--------99999------------999999 Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 9999988876521077744402234642256279604873162135 Q gi|254780795|r 168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ...+..+.+ .|+||.|+.|.|||++++...-|+||+.|. T Consensus 129 l~gL~ylH~-------~gIiHRDLKPeNILl~~~~~vKl~DFGlA~ 167 (355) T cd07874 129 LCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167 (355) T ss_pred HHHHHHHHH-------CCCEECCCCHHHEEECCCCCEECCCCCCCC T ss_conf 999999987-------982532487788678689974014544022 No 107 >cd07844 STKc_PCTAIRE_like The catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as Probab=97.69 E-value=0.0018 Score=42.10 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=73.7 Q ss_pred EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 53100466812001799943-995-89998216699---88999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) .-++.|..|.--+.|.+... +|+ |.+|+...... ....-.|+.+|..|...+ +++-.+ +...++..+ T Consensus 8 ~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~h~n-----Iv~l~~---~~~~~~~~~ 79 (291) T cd07844 8 KKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHAN-----IVTLHD---IIHTKKTLT 79 (291) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-----CCEEEE---EEEECCEEE T ss_conf 887698228693999999889998999999870101222788999999998678989-----874988---884188689 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.- .+.+.+ | ...+ ..... ......+...+..+.+ T Consensus 80 iv~Ey~~~~L------------~~~l~~-~--~~~l--------~~~~i------------~~~~~Qil~al~yLH~--- 121 (291) T cd07844 80 LVFEYLDTDL------------KQYMDD-C--GGGL--------SMHNV------------RLFLFQLLRGLAYCHQ--- 121 (291) T ss_pred EEEEECCCCH------------HHHHHH-C--CCCC--------CHHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9998028988------------999997-6--8999--------99999------------9999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||+++ +++. ++||+.|. T Consensus 122 ----~~iiHRDiKP~NILl~~~~~iK-l~DFG~s~ 151 (291) T cd07844 122 ----RRVLHRDLKPQNLLISERGELK-LADFGLAR 151 (291) T ss_pred ----CCEEECCCCHHHEEECCCCCEE-ECCCCCCH T ss_conf ----9946671767986888899788-64115331 No 108 >cd06642 STKc_STK25_YSK1 Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares feat Probab=97.69 E-value=0.0011 Score=43.43 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=74.4 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +.++.|..|.--+.|+..- ..|+ +.+|+....... ..+..|+.+|..|.. |.+++-.+ ...-.++.+ T Consensus 7 ~~l~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~ 78 (277) T cd06642 7 TKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS-----PYITRYYG---SYLKGTKLW 78 (277) T ss_pred EEEEEEECCCCCEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 9858960277829999998999969999998578884799999999999986799-----88895999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++.. .+ .. ..+ ..... ......+...+..+.+ T Consensus 79 ivmEy~~gg~L~~-----------~l---~~--~~l--------~e~~~------------~~i~~qi~~al~ylH~--- 119 (277) T cd06642 79 IIMEYLGGGSALD-----------LL---KP--GPL--------EETYI------------ATILREILKGLDYLHS--- 119 (277) T ss_pred EEEECCCCCCHHH-----------HH---HC--CCC--------CHHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9997999599999-----------98---44--999--------99999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 1077744402234642256279-604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+ .+ -+.||+.|. T Consensus 120 ----~~iiHRDlKp~NILl~~~~~v-Kl~DFGla~ 149 (277) T cd06642 120 ----ERKIHRDIKAANVLLSEQGDV-KLADFGVAG 149 (277) T ss_pred ----CCCCCCCCCCCCCEECCCCCE-EEEEECEEE T ss_conf ----895504247431116689988-884312035 No 109 >cd05578 STKc_Yank1 STKc_Yank1: Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Probab=97.69 E-value=0.0013 Score=42.92 Aligned_cols=136 Identities=20% Similarity=0.247 Sum_probs=73.4 Q ss_pred EECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 004668120017999439-9-5899982166--998---89999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|++...+ | .|.+|++.+. ... ..+..|+.+|..|... .+++-.+ ...-.++.+. T Consensus 6 ~~iG~G~fg~Vy~~~~~~t~~~~AvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~Hp-----nIv~~~~---~~~~~~~~~i 77 (258) T cd05578 6 RVIGKGSFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNELQILQSLEHP-----FLVNLWY---SFQDEEDMYL 77 (258) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEEE---EEEECCEEEE T ss_conf 5982288959999998899989999998178866989999999999999877998-----9895899---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. ..+. + ...+ ..... ......+...+..+.+ T Consensus 78 vmEy~~~g~L~-----------~~l~---~-~~~~--------~e~~~------------~~~~~Qi~~aL~ylH~---- 118 (258) T cd05578 78 VVDLLLGGDLR-----------YHLQ---Q-KVKF--------SEEQV------------KFYVCEIVLALEYLHS---- 118 (258) T ss_pred EEECCCCCCHH-----------HHHH---H-CCCC--------CHHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 99586998589-----------9998---7-5999--------99999------------9999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 077744402234642256279-6048731621356 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) ++++|.|+.|+|||++++ .+. +.||+.|.. T Consensus 119 ---~~IiHRDIKpeNILl~~~g~vk-l~DFG~a~~ 149 (258) T cd05578 119 ---KGIIHRDIKPDNILLDEQGHAH-LTDFNIATK 149 (258) T ss_pred ---CCEEECCCCHHHEEECCCCCEE-EEECCCCEE T ss_conf ---8944045775777898999899-944888867 No 110 >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed Probab=97.68 E-value=0.00035 Score=46.67 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=26.1 Q ss_pred CCCCEEECCCCCCCEEECC-----CCCEEEECCCCCCC Q ss_conf 7774440223464225627-----96048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN-----NKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~-----~~i~giIDF~~~~~ 214 (316) +..|+.|+|.||+|+++.. +++ ++|||+-++. T Consensus 277 f~dGFFHADpHPGNi~v~~d~~~~g~~-~~lDfGmvG~ 313 (540) T PRK04750 277 FRDGFFHADMHPGNIFVSYDHPENPRY-IALDFGIVGS 313 (540) T ss_pred CCCCCEECCCCCHHEEECCCCCCCCCE-EEEEEEEECC T ss_conf 008866069995103645777778747-8874013213 No 111 >cd06607 STKc_TAO Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Probab=97.68 E-value=0.00086 Score=44.17 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=79.3 Q ss_pred HHHHHHHHCCCCCE-EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99999984899860-53100466812001799943-995-899982166--9988---9999999999985326775551 Q gi|254780795|r 11 EIQSFVQEYAIGQL-NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIP 82 (316) Q Consensus 11 el~~il~~y~lg~~-~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~p 82 (316) ||..++++=|..+. .-++.|..|.--+.|++... +|+ |.+|+.... ...+ ++..|+.+|..|.. |.+ T Consensus 3 ~~~~~~~~~dp~~~Y~~l~~IG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnI 77 (307) T cd06607 3 EIAELFSKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRH-----PNT 77 (307) T ss_pred CHHHHCCCCCHHHCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCC T ss_conf 545406688967807953896038881999999889997999999851112578999999999999996799-----899 Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH Q ss_conf 00102677875224515578647887076899899999999864367530687543323112456457667520015522 Q gi|254780795|r 83 IPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED 162 (316) Q Consensus 83 i~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~ 162 (316) ++-. | ...-.+..+.+++|++|... ..+- .++ +.++ ..... . T Consensus 78 v~~~-~--~~~~~~~~~ivmEy~~G~~~------------~~~~-~~~--~~l~--------e~~i~------------~ 119 (307) T cd06607 78 IEYK-G--CYLREHTAWLVMEYCLGSAS------------DILE-VHK--KPLQ--------EVEIA------------A 119 (307) T ss_pred CCEE-E--EEEECCEEEEEEEECCCCHH------------HHHH-HHC--CCCC--------HHHHH------------H T ss_conf 9199-9--99989989999990789848------------9999-843--8999--------99999------------9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 788999999988876521077744402234642256279604873162135 Q gi|254780795|r 163 LKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 163 ~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ....+...+..+.+ .++||.|+.|.|||++++...-+.||+.|. T Consensus 120 i~~qil~aL~yLH~-------~~iiHRDlKP~NILl~~~g~vKl~DFG~a~ 163 (307) T cd06607 120 ICHGALQGLAYLHS-------HERIHRDIKAGNILLTEPGTVKLADFGSAS 163 (307) T ss_pred HHHHHHHHHHHHHH-------CCEEECCCCCCEEEECCCCCEEEEECCCCE T ss_conf 99999999999986-------897605467000789899999998679874 No 112 >cd05574 STKc_phototropin_like STKc_phototropin_like: Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalyti Probab=97.68 E-value=0.0014 Score=42.72 Aligned_cols=134 Identities=21% Similarity=0.306 Sum_probs=73.2 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-58999821669--98---8999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++... +| .|.+|+..+.. .. ..+..|+++|..|.. |.+++-.+ ..+-.+..+ T Consensus 6 ~~~LG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~l~~---~~~~~~~~y 77 (315) T cd05574 6 IKLLGKGDVGRVYLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH-----PFLPTLYA---SFQTETYLC 77 (315) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 5880128891999999999998999999837886687899999999999987799-----89990999---998899899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHH Q ss_conf 5786478870768998999999998643675306875433231124564576675200155227----889999999888 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL----KKEIDHEFCFLK 175 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~ 175 (316) .+++|++|..+.. .+ ... .. ..+++.. ...+...+..+. T Consensus 78 lvmE~~~gG~L~~-----------~l---~~~--------~~---------------~~l~e~~~~~~~~qil~al~ylH 120 (315) T cd05574 78 LVMDYCPGGELFR-----------LL---QRQ--------PG---------------KCFPEEVARFYAAEVLLALEYLH 120 (315) T ss_pred EEEECCCCCCHHH-----------HH---HHC--------CC---------------CCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9997789983899-----------99---860--------48---------------99999999999999999999998 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 7652107774440223464225627-9604873162135 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) + +|+||.|+.|.|+|+++ +.+. ++||+.|. T Consensus 121 ~-------~~IvHRDlKPeNILl~~~g~vk-l~DFgls~ 151 (315) T cd05574 121 L-------LGIVYRDLKPENILLHEDGHIM-LSDFDLSK 151 (315) T ss_pred H-------CCEEEEECCHHEEEECCCCCEE-EEECCCCE T ss_conf 5-------8788620452107997999789-95468632 No 113 >cd05112 PTKc_Itk Catalytic Domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ Probab=97.67 E-value=0.0027 Score=40.92 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=80.3 Q ss_pred EEEEEECCCCCEEEEEEEEECCC-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 05310046681200179994399-589998216-6998899999999999853267755510010267787522451557 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.-.+.|..|.--+.|+....++ +..+|+.+. ..+.+++-.|+++|..|+. |.+++-. |- ..-.+..+.+ T Consensus 6 ~~~~~~iG~G~fg~Vy~~~~~~~~~VAvK~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g~--~~~~~~~~iv 77 (256) T cd05112 6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSH-----PKLVQLY-GV--CTERSPICLV 77 (256) T ss_pred EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCCC-EE--EEECCEEEEE T ss_conf 09878980585859999998799999999988687888999999999997699-----9890403-17--7219989999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. . |+.. +...... ..+ .+...+...+..+.+ T Consensus 78 ~Ey~~~G~L~~-----~---------l~~~--------~~~~~~~---~~~---------~i~~~ia~gl~yLH~----- 118 (256) T cd05112 78 FEFMEHGCLSD-----Y---------LRAQ--------RGKFSQE---TLL---------GMCLDVCEGMAYLES----- 118 (256) T ss_pred EECCCCCCHHH-----H---------HHHC--------CCCCCHH---HHH---------HHHHHHHHHHHHHHH----- T ss_conf 96689998899-----9---------9754--------7999999---999---------999999999999836----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++++...-|-||+.+. T Consensus 119 --~~iiHrDlk~~NiLl~~~~~~Kl~DFGls~ 148 (256) T cd05112 119 --SNVIHRDLAARNCLVGENQVVKVSDFGMTR 148 (256) T ss_pred --CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf --891567577163899899989996268750 No 114 >cd06917 STKc_NAK1_like Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Probab=97.67 E-value=0.0016 Score=42.42 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=78.1 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 0046681200179994-399-5899982166998---8999999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +-|..|.--+.|+... .+| .|.+|++...... .++..|+++|..|+..+ .|.+++-.+ ...-+++.+.++ T Consensus 7 ~~iG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~h~~--~pnIv~~~~---~~~~~~~~~ivm 81 (277) T cd06917 7 ELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQ--PPNITKYYG---SYLKGPRLWIIM 81 (277) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC--CCCEEEEEE---EEEECCEEEEEE T ss_conf 797027683999999989998999999853149679999999999999717899--998789999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. .+ + +. ..++ ..... .....+...+..+.+ T Consensus 82 E~~~~g~L~--------~~---~----~~-~~~~--------e~~~~------------~~~~qi~~al~ylH~------ 119 (277) T cd06917 82 EYAEGGSVR--------TL---M----KA-GPIA--------EKYIS------------VIIREVLVALKYIHK------ 119 (277) T ss_pred ECCCCCCHH--------HH---H----HC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------ T ss_conf 377988899--------99---8----54-9999--------99999------------999999999999987------ Q ss_pred CCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 7744402234642256279-6048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++.+ ++. +.||+.|.. T Consensus 120 -~~iiHRDlKpeNILl~~~~~vK-L~DFGla~~ 150 (277) T cd06917 120 -VGVIHRDIKAANILVTNTGNVK-LCDFGVAAL 150 (277) T ss_pred -CCCEEEECCHHHCEECCCCCEE-EECCCCCEE T ss_conf -8955534562541067999889-904527657 No 115 >cd07831 STKc_MOK The catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase subfamily. Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and different Probab=97.67 E-value=0.0014 Score=42.73 Aligned_cols=138 Identities=17% Similarity=0.273 Sum_probs=71.7 Q ss_pred EECCCCCEEEEEEEEE-CCCC-EEEEEECCCC-CHHHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 0046681200179994-3995-8999821669-988999--999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKRM-NEKDLP--VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~-~~~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|..|.--+.|++.. .+|+ |.+|+..+.. +..++. .++.+|..|..+ |.+++-.+ -.+..-.+..+.++ T Consensus 5 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~~h----pnIv~~~~-~~~~~~~~~~~lv~ 79 (282) T cd07831 5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQAMRRLSPH----PNIIRLIE-VLFDRKTGRLALVF 79 (282) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC----CCEEEEEE-EEEECCCCEEEEEE T ss_conf 59730718099999988999899999988002888899999999999853799----99847999-99967898799999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) ++++|.- .+ . +.. .. ........ ......+...+..+.+ T Consensus 80 E~~~~~l---------~~---~---l~~--~~------~~l~e~~~------------~~~~~Qil~al~~LH~------ 118 (282) T cd07831 80 ELMDMNL---------YE---L---IKG--RK------RPLPEKRV------------KNYMYQLLKSLDHMHR------ 118 (282) T ss_pred ECCCHHH---------HH---H---HHH--CC------CCCCHHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 4772789---------99---9---996--69------99999999------------9999999999999998------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++.+. ++||+.|. T Consensus 119 -~~iiHRDiKp~NILl~~~~~K-l~DFG~a~ 147 (282) T cd07831 119 -NGIFHRDIKPENILIKDDILK-LADFGSCR 147 (282) T ss_pred -CCEECCCCCCCEEEEECCEEE-EEECCCCE T ss_conf -990613054013997089089-94336440 No 116 >cd05122 PKc_STE Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phospho Probab=97.66 E-value=0.00062 Score=45.07 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=75.0 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 0046681200179994-399-58999821669--9889999999999985326775551001026778752245155786 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) +.|..|.--+.|+... .+| .|.+|+.+.+. ..+.+..|+++|..|+. |.+++..+ ...-.+..+.+++ T Consensus 6 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~E~~~l~~l~h-----pnIv~l~~---~~~~~~~~~ivmE 77 (253) T cd05122 6 EKIGKGAFGTVYKARHKKTGELVAVKVIKLESDEEQEQILNEIQILKKCKH-----PNIVKYYG---SYLKKDELWIVME 77 (253) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEE T ss_conf 797138781999999999998999999744745689999999999986799-----89991999---9998999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|.++... +.+- ..++ .... ......+...+..+.+ T Consensus 78 ~~~gg~L~~~-----------l~~~----~~l~--------e~~~------------~~~~~qi~~al~~lH~------- 115 (253) T cd05122 78 YCDGGSLDDL-----------LKST----GPLP--------ESQI------------AYICREVLQGLEYLHS------- 115 (253) T ss_pred CCCCCCHHHH-----------HHHC----CCCC--------HHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 8899998999-----------9755----9999--------9999------------9999999999999998------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|.|+.|+|||++.+...-++||+.|. T Consensus 116 ~~ivHRDlKp~Nill~~~g~vKl~DFGla~ 145 (253) T cd05122 116 NGIIHRDIKPANILLTSDGEVKLADFGVSA 145 (253) T ss_pred CCEECCCCCHHHEEECCCCCEEEEECCCEE T ss_conf 893406577888899899988992437126 No 117 >cd05118 STKc_CMGC The catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. Probab=97.66 E-value=0.00034 Score=46.77 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=74.1 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC-CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 100466812001799943-99-58999821669-98---89999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM-NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~-~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|++... .| .|.+|+...+. +. .....|+++|..|.. |.+|+-.+ +...++..+. T Consensus 4 i~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~l 75 (283) T cd05118 4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNH-----PNIIKLLD---VFRHKGDLYL 75 (283) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE T ss_conf 689422669499999988999899999983345395889999999999986799-----89893999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|... . .+......++ .... ......+...+..+.+ T Consensus 76 vmEy~~~~l~-----~----------~l~~~~~~l~--------e~~~------------~~~~~qil~al~yLH~---- 116 (283) T cd05118 76 VFEFMDTDLY-----K----------LIKDRQRGLP--------ESLI------------KSYLYQLLQGLAFCHS---- 116 (283) T ss_pred EEECCCCCHH-----H----------HHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 9817788657-----9----------9997289989--------9999------------9999999999999997---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-|+||+.|. T Consensus 117 ---~~IiHRDlKPeNILl~~~~~iKl~DFG~a~ 146 (283) T cd05118 117 ---HGILHRDLKPENLLINTEGVLKLADFGLAR 146 (283) T ss_pred ---CCEEECCCCHHHEEECCCCCEEEEEECCCE T ss_conf ---996604376566689899988998404562 No 118 >COG4857 Predicted kinase [General function prediction only] Probab=97.66 E-value=0.00015 Score=49.07 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=38.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH-HHHH Q ss_conf 744402234642256279604873162135680001989999-8643 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI-NAWC 229 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i-~~~c 229 (316) ..+||||+|.+-|++.+.+.. |||=+++-|||..||++..+ |-|. T Consensus 228 etLiHGDLHsGSIfvte~etk-vIDPEFaFYGPmafDiG~~iaNl~~ 273 (408) T COG4857 228 ETLIHGDLHSGSIFVTEKETK-VIDPEFAFYGPMAFDIGMLIANLWM 273 (408) T ss_pred HHHHCCCCCCCCEEEECCCCE-EECCCCCCCCCCHHHHHHHHHHHHH T ss_conf 777606655671775047634-4274110037403239899999999 No 119 >cd06659 STKc_PAK6 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase Probab=97.66 E-value=0.0021 Score=41.66 Aligned_cols=136 Identities=15% Similarity=0.295 Sum_probs=75.8 Q ss_pred EEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 3100466812001799943-99-5899982166--998899999999999853267755510010267787522451557 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) .++.|..|.--+.|+..-. +| .|.+|+...+ ...+.+..|+++|..|...+ +++-.+ ....++..+.+ T Consensus 25 ~~~~iG~G~fg~V~~a~~k~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-----Iv~l~~---~~~~~~~~~iv 96 (297) T cd06659 25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQN-----VVEMYK---SYLVGEELWVL 96 (297) T ss_pred CCEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCEEEE---EEEECCEEEEE T ss_conf 1769603888299999989999899999986055204899999999999779989-----991999---99989999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|..+. ..+.+. .++ ..... .....+...+..+.+ T Consensus 97 mEy~~gg~L~-----------~~~~~~-----~l~--------e~~~~------------~i~~qil~aL~ylH~----- 135 (297) T cd06659 97 MEFLQGGALT-----------DIVSQT-----RLN--------EEQIA------------TVCESVLQALCYLHS----- 135 (297) T ss_pred EECCCCCCHH-----------HHHHCC-----CCC--------HHHHH------------HHHHHHHHHHHHHHH----- T ss_conf 9678989389-----------998728-----999--------99999------------999999999999997----- Q ss_pred CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 7774440223464225627-9604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++. +.+. ++||+.|. T Consensus 136 --~~IiHRDlKp~NILl~~~g~vK-l~DFG~a~ 165 (297) T cd06659 136 --QGVIHRDIKSDSILLTLDGRVK-LSDFGFCA 165 (297) T ss_pred --CCEEECCCCCHHEEECCCCCEE-EEECCCCE T ss_conf --8966466870007998999899-99657844 No 120 >cd07832 STKc_CCRK The catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase subfamily. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the deve Probab=97.65 E-value=0.0015 Score=42.61 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=71.9 Q ss_pred EECCCCCEEEEEEEEEC-CCC-EEEEEECCCC--C--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 00466812001799943-995-8999821669--9--8899999999999853267755510010267787522451557 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KGT-FILTIYEKRM--N--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +-|..|.--..|.+... +|+ +.+|+..... . ...+-.|+.+|..|.. |.+++..+ ....++..+.+ T Consensus 6 ~~iG~G~fg~V~~~~d~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~~l~~l~h-----pnIi~~~~---~~~~~~~~~iV 77 (286) T cd07832 6 GRIGEGAHGIVFKAKHLETGETVALKKIHLRRLEGGIPNAALREIKALQACQH-----PNIVKLLD---VFPHGSGFVLV 77 (286) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEE T ss_conf 28632508499999988999899999981334484789999999999986799-----99892999---99989999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) +++++|. + -..+ ......++ ... -......+...+..+.+ T Consensus 78 mE~~~~~-L-----------~~~l---~~~~~~~~--------~~~------------i~~~~~qil~aL~yLH~----- 117 (286) T cd07832 78 MEYMPSD-L-----------SEVL---RDSERPLP--------EAQ------------VKSYMRMLLKGLAHMHA----- 117 (286) T ss_pred EECCCCC-H-----------HHHH---HHCCCCCC--------HHH------------HHHHHHHHHHHHHHHHH----- T ss_conf 8489998-8-----------9999---86599989--------999------------99999999999999998----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|+|||++++...-++||+.|. T Consensus 118 --~~IiHrDiKPeNIll~~~~~vKL~DFG~a~ 147 (286) T cd07832 118 --LGIMHRDLKPANLLISADGVLKIADFGLAR 147 (286) T ss_pred --CCEEECCCCHHHEEECCCCCEEEECCCCCE T ss_conf --995777587687798699988980166451 No 121 >cd05598 STKc_LATS STKc_LATS: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Probab=97.64 E-value=0.0026 Score=41.10 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=71.5 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 10046681200179994-3995-899982166--9988---999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.- ..|+ |.+|+..+. .... .+..|.++|..+. .|.+++-.. ..+-.+..+ T Consensus 6 ik~iG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~ly 77 (376) T cd05598 6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEAD-----NEWVVKLYY---SFQDKDNLY 77 (376) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEE T ss_conf 879823888199999989999899999982688027679999999999998689-----998894999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+ .+. ..++ ..... ....++...+..+. T Consensus 78 lvmEy~~gGdL~-----------~~l---~~~-~~~~--------e~~a~------------~~~~qi~~aL~ylH---- 118 (376) T cd05598 78 FVMDYIPGGDMM-----------SLL---IRL-GIFE--------EDLAR------------FYIAELTCAIESVH---- 118 (376) T ss_pred EEEECCCCCCHH-----------HHH---HHC-CCCC--------HHHHH------------HHHHHHHHHHHHHH---- T ss_conf 999647997089-----------999---873-9999--------99999------------99999999999997---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 107774440223464225627960487316213 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+|+||.|+.|.|||++.+...-++||+.| T Consensus 119 ---~~giiHRDlKPeNILl~~~g~iKL~DFGla 148 (376) T cd05598 119 ---KMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (376) T ss_pred ---HCCEEECCCCHHEEEECCCCCEEEEECCCC T ss_conf ---376776555500168889998899725886 No 122 >KOG1235 consensus Probab=97.63 E-value=0.0003 Score=47.17 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=25.0 Q ss_pred CCCCEEECCCCCCCEEECC----CCCEEEECCCCCCC Q ss_conf 7774440223464225627----96048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN----NKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~----~~i~giIDF~~~~~ 214 (316) +..|++|+|-||+|+++.. +.-..+.||+-... T Consensus 318 f~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~ 354 (538) T KOG1235 318 FKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV 354 (538) T ss_pred HHCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCC T ss_conf 8539715799987378712789985489983445134 No 123 >cd07853 STKc_NLK The catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase subfamily. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate Probab=97.61 E-value=0.00086 Score=44.17 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=68.6 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECC----CCCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCE Q ss_conf 10046681200179994-399-589998216----69988999999999998532677-555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEK----RMNEKDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~----~~~~~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|.+.. .+| .+.+|...+ ......+-.|+++|..|...+|- .-..+.+.+...+ ...+ T Consensus 5 ir~IG~G~fG~Vy~a~d~~tg~~VAiKki~~~~~~~~~~~~~~rEi~iL~~l~H~NIv~~~~v~~~~~~~~~----~~iy 80 (372) T cd07853 5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPF----EEIY 80 (372) T ss_pred EEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC----EEEE T ss_conf 046303768399999978999899999989300386889999999999986799898918999951787762----2799 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .++++++|. ||.....- ..+..... ......+...+..+.+ T Consensus 81 iv~el~~~d-------------------L~~~i~~~-----~~l~~~~i------------~~i~~Qil~aL~ylHs--- 121 (372) T cd07853 81 VVTELMQSD-------------------LHKIIVSP-----QPLSSDHV------------KVFLYQILRGLKYLHS--- 121 (372) T ss_pred EEEECCCCC-------------------HHHHHHHC-----CCCCHHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 998158975-------------------89999746-----99999999------------9999999999999975--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|+|++.+...-|+||+.|. T Consensus 122 ----~~IiHRDLKP~NILl~~~~~lKI~DFGlAr 151 (372) T cd07853 122 ----AGILHRDIKPGNLLVNSNCVLKICDFGLAR 151 (372) T ss_pred ----CCCEECCCCHHHEEECCCCCEEEEECCCCE T ss_conf ----991527787798688789988972225553 No 124 >cd06649 PKc_MEK2 MEK2 (MAPKK2 or MKK2): Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase Probab=97.60 E-value=0.0053 Score=39.06 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=72.8 Q ss_pred EEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 3100466812001799943-995-899982166998---89999999999985326775551001026778752245155 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) -++.|..|.--+.|++... +|+ +.+|+....... ..+-.|+.+|..+.. |.+++-.+ ...-.+..+. T Consensus 9 ~i~~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~rE~~il~~l~h-----pnIV~~~~---~~~~~~~~~i 80 (331) T cd06649 9 RISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNS-----PYIVGFYG---AFYSDGEISI 80 (331) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEE T ss_conf 813861289949999998899949999996543087899999999999986799-----89995999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++. +.+.+ ...++ .. ... .....+...+..+.. T Consensus 81 vmEy~~gg~L~-----------~~l~~----~~~~~--------e~----~~~--------~i~~qil~gL~yLH~---- 121 (331) T cd06649 81 CMEHMDGGSLD-----------QVLKE----AKRIP--------EE----ILG--------KVSIAVLRGLAYLRE---- 121 (331) T ss_pred EEECCCCCCHH-----------HHHHH----CCCCC--------HH----HHH--------HHHHHHHHHHHHHHH---- T ss_conf 99838999689-----------99986----49999--------99----999--------999999999999985---- Q ss_pred CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 077744402234642256279-604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) ..++||.|+.|.|||++.+ .+. ++||+.|. T Consensus 122 --~~~IiHRDiKP~NILl~~~g~vK-L~DFGla~ 152 (331) T cd06649 122 --KHQIMHRDVKPSNILVNSRGEIK-LCDFGVSG 152 (331) T ss_pred --CCCEEECCCCCCCEEECCCCCEE-EEECCCCC T ss_conf --39886535661106898999999-95679876 No 125 >cd05577 STKc_GRK STKc_GRK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diver Probab=97.60 E-value=0.0011 Score=43.35 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=67.5 Q ss_pred CCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 6812001799943-99-5899982166-9988----99999999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQTS-KG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|++... +| .|.+|+..+. .... ..-.|..+|..+. .|.+++... ..+..+..+.+++| T Consensus 3 ~G~fg~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~-----~p~iv~~~~---~~~~~~~~~~vme~ 74 (277) T cd05577 3 KGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKIILEKVS-----SPFIVSLAY---AFETKDALCLVLTL 74 (277) T ss_pred CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEEEEE T ss_conf 6748699999998999899999984788030567999999999998779-----998993989---99989989999996 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+. ..+.+.+ ...++ ..... .....+...+..+.+ + T Consensus 75 ~~ggdL~-----------~~l~~~~--~~~l~--------e~~~~------------~~~~ql~~al~ylH~-------~ 114 (277) T cd05577 75 MNGGDLK-----------FHIYNVG--NPGFD--------EARAR------------FYAAEIICGLEHLHR-------R 114 (277) T ss_pred CCCCCHH-----------HHHHHCC--CCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------C T ss_conf 5798389-----------9998638--99989--------99999------------999999999999987-------8 Q ss_pred CEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 4440223464225627-9604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) |+||.|+.|.|+|+++ +.+ -|+||+.|. T Consensus 115 ~IiHRDiKp~NiLl~~~g~i-Kl~DFGla~ 143 (277) T cd05577 115 RIVYRDLKPENILLDDHGHI-RISDLGLAV 143 (277) T ss_pred CEEECCCCCCCCCCCCCCCE-EEEECCEEE T ss_conf 92506668644130689978-972668147 No 126 >cd07840 STKc_CDK9_like The catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RN Probab=97.60 E-value=0.0016 Score=42.42 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=70.2 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 10046681200179994-3995-8999821669988----9999999999985326775551001026778752245155 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.|..|.--+.|.+.. ..|+ |.+|+........ ....|+++|..|.. |.+++-.+ -......+..+. T Consensus 4 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIi~~~~-~~~~~~~~~~~i 77 (287) T cd07840 4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRH-----PNIVRLKE-IVTSKGKGSIYM 77 (287) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEEEE T ss_conf 899732869299999988999899999983001540668999999999997799-----89763678-999669987999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|.+|. + ...+ .. .+.+ ....... .....+...+..+.+ T Consensus 78 v~E~~~~d-L-----------~~~l---~~--~~~~------~~~~~~~------------~~~~qll~al~ylH~---- 118 (287) T cd07840 78 VFEYMDHD-L-----------TGLL---DS--PEVK------FTESQIK------------CYMKQLLEGLQYLHS---- 118 (287) T ss_pred EEECCCCC-H-----------HHHH---HH--CCCC------CCHHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 99268987-8-----------9999---82--6899------8999999------------999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++++...-++||+.|. T Consensus 119 ---~~iiHRDlKp~NILl~~~~~vKl~DFG~a~ 148 (287) T cd07840 119 ---NGILHRDIKGSNILINNDGVLKIADFGLAR 148 (287) T ss_pred ---CCEEEEECCHHHEEECCCCCEEEEECCCCE T ss_conf ---997753367788478899998983679873 No 127 >cd06615 PKc_MEK MEK1/2 (MAPK kinase 1/2, MAPKK1/2 or MKK1/2): Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, extracellul Probab=97.60 E-value=0.0036 Score=40.12 Aligned_cols=139 Identities=14% Similarity=0.192 Sum_probs=73.2 Q ss_pred EEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 3100466812001799943-995-899982166998---89999999999985326775551001026778752245155 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) -++.|..|.--+.|++... +|+ +.+|+....... ..+..|+.+|..+.. |.+++-.+ .....+..+. T Consensus 5 ~i~~iG~G~fg~V~~a~~~~t~~~~A~K~i~~~~~~~~~~~~~~Ei~il~~~~h-----pnIv~l~~---~~~~~~~~~i 76 (308) T cd06615 5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNS-----PYIVGFYG---AFYSDGEISI 76 (308) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEE T ss_conf 967861188929999998899969999998655198999999999999986799-----99990999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. . .+.+. ..++ .. .. ......+...+..+.+ T Consensus 77 vmEy~~gg~L~-----~------~l~~~----~~l~--------e~----~~--------~~i~~qil~~L~ylH~---- 117 (308) T cd06615 77 CMEHMDGGSLD-----Q------VLKKA----GRIP--------EN----IL--------GKISIAVLRGLTYLRE---- 117 (308) T ss_pred EEECCCCCCHH-----H------HHHHC----CCCC--------HH----HH--------HHHHHHHHHHHHHHHH---- T ss_conf 99737998099-----9------99764----9999--------99----99--------9999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..++||.|+.|.|||++.+...-+.||+.|. T Consensus 118 --~~~IiHRDiKP~NILl~~~g~vKl~DFGls~ 148 (308) T cd06615 118 --KHKIMHRDVKPSNILVNSRGEIKLCDFGVSG 148 (308) T ss_pred --HCCEEEEECCCCCEEECCCCCEEEEEECCCE T ss_conf --1998753346122789799999998603330 No 128 >cd05123 STKc_AGC STKc_AGC: Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required o Probab=97.60 E-value=0.0014 Score=42.80 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=68.1 Q ss_pred CCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 6812001799943-99-5899982166--9988999---99999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|.+.-. +| .+.+|+..+. .+.+.+. .|+++|..|. .|.+++-.+ .....+..+.+++| T Consensus 3 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~-----hpnIv~l~~---~~~~~~~~~ivmE~ 74 (250) T cd05123 3 KGSFGKVYLVRKKDTGKLYAMKVLKKKKILKRNEVEHTLNERDILSRVD-----HPFIVKLHY---AFQTKEKLYLVMEY 74 (250) T ss_pred CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCCCCC---EEEECCEEEEEEEC T ss_conf 6858499999998999799999984677559899999999999999779-----989986332---26359989999948 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. .+.+- ..+...... .....+...+..+.+ + T Consensus 75 ~~gg~L~~-----------~l~~~------------~~l~~~~~~------------~~~~ql~~gl~~lH~-------~ 112 (250) T cd05123 75 VNGGDLFT-----------HLSKE------------GRFDEERAR------------FYAAEIVLALEYLHS-------L 112 (250) T ss_pred CCCCCHHH-----------HHHHC------------CCCCHHHHH------------HHHHHHHHHHHHHHH-------C T ss_conf 99994899-----------99875------------998999999------------999999999999998-------9 Q ss_pred CEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 44402234642256279-604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) |+||.|+.|.|||++++ .+. ++||+.|. T Consensus 113 ~iiHrDIKp~NILi~~~g~vk-l~DFGla~ 141 (250) T cd05123 113 GIIYRDLKPENILLDADGHIK-LTDFGLAK 141 (250) T ss_pred CEEEEECCHHHCCCCCCCCEE-EEECCCCE T ss_conf 978602567756566899989-83745225 No 129 >cd05082 PTKc_Csk Catalytic Domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re Probab=97.60 E-value=0.0016 Score=42.47 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=82.3 Q ss_pred EEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf 10046681200179994399589998216699889999999999985326775551001026778752245155786478 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK 106 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~ 106 (316) .+.|..|.--+.|+......+..+|++.+....+....|+.+|..|...+| ++-. |- ...-.+..+.+++|++ T Consensus 11 ~~~iG~G~fg~V~~~~~~g~~vAvK~i~~~~~~~~f~~E~~~l~~l~HpnI-----v~~~-g~-~~~~~~~~~iv~Ey~~ 83 (256) T cd05082 11 LQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNL-----VQLL-GV-IVEEKGGLYIVTEYMA 83 (256) T ss_pred EEEEEECCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC-----CEEE-EE-EEECCCEEEEEEECCC T ss_conf 459820898389999989939999997873059999999999985799898-----8099-99-9937982999997489 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 87076899899999999864367530687543323112456457667520015522788999999988876521077744 Q gi|254780795|r 107 GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGI 186 (316) Q Consensus 107 G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~ 186 (316) |.++.. .|+..... .. .+... -.....+...+..+.. .++ T Consensus 84 ~gsL~~--------------~l~~~~~~-------~~---~~~~~---------~~i~~~ia~gl~yLH~-------~~i 123 (256) T cd05082 84 KGSLVD--------------YLRSRGRS-------VL---GGDCL---------LKFSLDVCEAMEYLEA-------NNF 123 (256) T ss_pred CCCHHH--------------HHHHCCCC-------CC---CHHHH---------HHHHHHHHHHHHHHHH-------CCC T ss_conf 997899--------------88656997-------79---99999---------9999999999999973-------993 Q ss_pred EECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCH Q ss_conf 40223464225627960487316213568000198 Q gi|254780795|r 187 IHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDL 221 (316) Q Consensus 187 IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DL 221 (316) ||+|+.+.|||++.+...-|.||+.+.......+. T Consensus 124 iHrDlK~~NiLv~~~~~~Kl~DFGls~~~~~~~~~ 158 (256) T cd05082 124 VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT 158 (256) T ss_pred CCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC T ss_conf 77757762288989992898005777077777876 No 130 >pfam00069 Pkinase Protein kinase domain. Probab=97.60 E-value=0.00087 Score=44.14 Aligned_cols=137 Identities=21% Similarity=0.269 Sum_probs=74.2 Q ss_pred EECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 00466812001799943-99-5899982166-9988---99999999999853267755510010267787522451557 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.|..|.--+.|+.... +| .+.+|+.... .+.. .+..|+.+|..|.. |.+++-.+ +..-.+..+.+ T Consensus 5 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~iv 76 (260) T pfam00069 5 RKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSH-----PNIVRLID---AFEDKDHLYLV 76 (260) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEE T ss_conf 99732889399999999999899999983332895899999999999996799-----89992999---99989999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. .+ .+. ..+ ..... ......+...+..+.+ T Consensus 77 mEy~~gg~L~~-----------~l---~~~-~~l--------~~~~~------------~~~~~qi~~al~ylH~----- 116 (260) T pfam00069 77 MEYCEGGDLFD-----------YL---SRG-GPL--------SEDEA------------KKIALQILRGLEYLHS----- 116 (260) T ss_pred EECCCCCCHHH-----------HH---HHC-CCC--------CHHHH------------HHHHHHHHHHHHHHHH----- T ss_conf 97889981899-----------99---867-999--------99999------------9999999999999998----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 777444022346422562796048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++.+...-++||+.|.. T Consensus 117 --~~iiHRDiKp~NILl~~~~~~Kl~DFGla~~ 147 (260) T pfam00069 117 --NGIIHRDLKPENILLDENGVVKIADFGLAKK 147 (260) T ss_pred --CCCEECCCCHHHEEECCCCCEEEEECCCCEE T ss_conf --8945132678997987999899985888646 No 131 >cd06638 STKc_myosinIIIA Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Probab=97.60 E-value=0.0025 Score=41.21 Aligned_cols=145 Identities=15% Similarity=0.224 Sum_probs=76.4 Q ss_pred EEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHCCCCE Q ss_conf 310046681200179994-399-5899982166-998899999999999853267755510010267787---5224515 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG---FLCKKPA 99 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~---~~~~k~~ 99 (316) -.+.|..|.--+.|+..- .+| +|.+|+.... ...+++..|.++|..|..+ |.+++-. |..+. .-.++.+ T Consensus 22 i~~~iG~G~fg~Vy~a~~~~~g~~vAiK~i~~~~~~~~~~~~E~~il~~l~~H----pnIv~~~-~~~~~~~~~~~~~~~ 96 (286) T cd06638 22 IIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDH----PNVVKFY-GMYYKKDVKNGDQLW 96 (286) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHCCC----CCCCEEE-EEEEECCCCCCCEEE T ss_conf 86598226383999999758998999999890116589999999999974599----9978499-999652656598899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+..+-.....++ .... ......+...+..+.. T Consensus 97 ivmE~~~gg~L~d-----------l~~~~~~~~~~~~--------e~~~------------~~i~~qil~aL~ylH~--- 142 (286) T cd06638 97 LVLELCNGGSVTD-----------LVKGFLKRGERME--------EPII------------AYILHEALMGLQHLHV--- 142 (286) T ss_pred EEEECCCCCCHHH-----------HHHHHHHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9997689988999-----------9999886078899--------9999------------9999999999999998--- Q ss_pred HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 1077744402234642256279-6048731621356 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) .++||.|+.|.|||++.+ .+. |+||+.|.. T Consensus 143 ----~~iiHRDiKp~NILl~~~~~vK-l~DFGla~~ 173 (286) T cd06638 143 ----NKTIHRDVKGNNILLTTEGGVK-LVDFGVSAQ 173 (286) T ss_pred ----CCCEEEECCHHHEEECCCCCEE-EEECCCCEE T ss_conf ----8954202667887886899879-962676337 No 132 >cd06626 STKc_MEKK4 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, Probab=97.59 E-value=0.0012 Score=43.20 Aligned_cols=134 Identities=16% Similarity=0.264 Sum_probs=72.6 Q ss_pred CCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 46681200179994-399-5899982166-9988---9999999999985326775551001026778752245155786 Q gi|254780795|r 30 IIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 30 i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) |..|.--+.|+... .+| .|.+|++... .+.. .+..|+.+|..|+. |.+++-.+ +...++..+.+++ T Consensus 8 lG~G~~g~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~~---~~~~~~~~~lvmE 79 (264) T cd06626 8 IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKH-----PNLVKYYG---VEVHREKVYIFME 79 (264) T ss_pred EECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEE T ss_conf 821748199999988999899999981000897999999999999987799-----89894999---9988999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+.. .+ +. ...++ .... ......+...+..+.+ T Consensus 80 ~~~~g~L~~-----------~l---~~-~~~~~--------e~~~------------~~~~~qi~~al~ylH~------- 117 (264) T cd06626 80 YCSGGTLEE-----------LL---EH-GRILD--------EHVI------------RVYTLQLLEGLAYLHS------- 117 (264) T ss_pred CCCCCCHHH-----------HH---HH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 899996999-----------99---70-79999--------9999------------9999999999999998------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|+|||++.+...-|.||+.|. T Consensus 118 ~~iiHRDlKp~NILl~~~~~vKl~DFG~a~ 147 (264) T cd06626 118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAV 147 (264) T ss_pred CCEEECCCCHHHEEECCCCCEEEEECCCCE T ss_conf 994537557899568899969995476745 No 133 >cd07845 STKc_CDK10 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. C Probab=97.59 E-value=0.0012 Score=43.17 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=72.7 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 5310046681200179994-399-58999821669988----99999999999853267755510010267787522451 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) .-++.|..|.--+.|.+.. .+| .|.+|+........ ..-.|+.+|..|.. |.+++-.+ -....-.+.. T Consensus 10 ~~~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H-----pnIv~l~~-~~~~~~~~~~ 83 (309) T cd07845 10 EKLNRIGEGTYGIVYRARDTRSGEIVALKKVRMDRERDGIPISSLREITLLLNLRH-----PNIVELKE-VVVGKHLDSI 83 (309) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-----CCCCEEEE-EEECCCCCEE T ss_conf 65689524728199999988999799999981100431557889999999986689-----98120688-9943888879 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|. ++..+-+. ...|+ .... ......+...++.+.+ T Consensus 84 ~lvmE~~~~~------------L~~~l~~~---~~~l~--------e~~i------------~~i~~Qll~al~yLH~-- 126 (309) T cd07845 84 FLVMEYCEQD------------LASLLDNM---PTPFS--------ESQV------------KCLMLQLLRGLQYLHE-- 126 (309) T ss_pred EEEEECCCCC------------HHHHHHHC---CCCCC--------HHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 9999548988------------79999856---89999--------9999------------9999999999999987-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-++||+.|. T Consensus 127 -----~~IiHRDiKPeNILl~~~~~vKl~DFGla~ 156 (309) T cd07845 127 -----NFIIHRDLKVSNLLLTDKGCLKIADFGLAR 156 (309) T ss_pred -----CCCEECCCCHHHEEECCCCCEEEEECCCHH T ss_conf -----894668688233678799988997423122 No 134 >cd07863 STKc_CDK4 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiqu Probab=97.58 E-value=0.00094 Score=43.92 Aligned_cols=144 Identities=21% Similarity=0.252 Sum_probs=72.3 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHCCCC Q ss_conf 10046681200179994-3995-8999821669988----9999999999985326775551001026--7787522451 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDG--KLYGFLCKKP 98 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G--~~~~~~~~k~ 98 (316) ++.|..|.--+.|++.- ++|+ +.+|+........ ..-.++..|..|.+ +.-|..++..+= ..-..-.... T Consensus 5 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~~--~~Hpniv~~~~~~~~~~~~~~~~~ 82 (288) T cd07863 5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEA--FDHPNIVRLMDVCATSRTDRETKV 82 (288) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEEEEECCCCCCCEE T ss_conf 348412308599999988999799999983200443447999999999998755--689998989777620355776269 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.++++++|. + + ..+.++. ..+++ ..... .....+...++.+.+ T Consensus 83 ~lv~e~~~~~-l--------~---~~~~~~~--~~~~~--------~~~i~------------~~~~qil~aL~ylH~-- 126 (288) T cd07863 83 TLVFEHVDQD-L--------R---TYLDKVP--PPGLP--------AETIK------------DLMRQFLRGLDFLHA-- 126 (288) T ss_pred EEEEECCCCC-H--------H---HHHHHCC--CCCCC--------HHHHH------------HHHHHHHHHHHHHHH-- T ss_conf 9999627986-8--------9---9998456--89999--------99999------------999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 2107774440223464225627-96048731621356 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) .|+||.|+.|+|||++. +.+. ++||+.|.. T Consensus 127 -----~~IiHRDiKp~NIll~~~~~vk-l~DFG~a~~ 157 (288) T cd07863 127 -----NCIVHRDLKPENILVTSGGQVK-LADFGLARI 157 (288) T ss_pred -----CCEEECCCCHHHEEECCCCCEE-EEECCCCCC T ss_conf -----8906775661120466899689-843360010 No 135 >cd05059 PTKc_Tec_like Catalytic Domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows Probab=97.57 E-value=0.0027 Score=40.98 Aligned_cols=141 Identities=15% Similarity=0.167 Sum_probs=78.5 Q ss_pred EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 05310046681200179994399-5899982166-998899999999999853267755510010267787522451557 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.-.+.|..|.--+.|+.....+ +..+|+.... .+.+++-.|+++|..|.. |.+++-- | +..-.+..+.+ T Consensus 6 ~~~~~~iG~G~fg~V~~~~~~~~~~vAvK~l~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g--~~~~~~~~~lv 77 (256) T cd05059 6 LTFLKELGSGQFGVVRLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSH-----PNLVQLY-G--VCTKQRPIFIV 77 (256) T ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEE T ss_conf 69845970488869999998799899999988677898999999999985899-----8881599-9--99889988999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. . |+.... ....... -.+...+...+..+.+ T Consensus 78 mEy~~~G~L~~-----~---------l~~~~~--------~~~~~~~------------~~i~~~ia~gl~yLH~----- 118 (256) T cd05059 78 TEYMANGCLLN-----F---------LRQRRG--------KFGTEWL------------LDMCSDVCEAMEYLES----- 118 (256) T ss_pred EEECCCCCHHH-----H---------HHHCCC--------CCCHHHH------------HHHHHHHHHHHHHHHH----- T ss_conf 97069897999-----9---------986689--------9999999------------9999999999999987----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++++...-|.||+.+. T Consensus 119 --~~ivHrDlK~~NiLl~~~~~~Ki~DFGls~ 148 (256) T cd05059 119 --NSFIHRDLAARNCLVGEDNVVKVSDFGLAR 148 (256) T ss_pred --CCEECCCCCCCEEEECCCCCEEEEECCCCC T ss_conf --991678678063899999979998667642 No 136 >cd05571 STKc_PKB STKc_PKB: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Probab=97.57 E-value=0.0018 Score=42.11 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=68.5 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-5899982166--9988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... +| .|.+|+..+. ...+++. .|.++|..+. -|.+++-.. ...-.++.+.+++ T Consensus 4 G~G~fG~V~l~~~k~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~l~-----Hp~Iv~l~~---~f~~~~~lylVmE 75 (323) T cd05571 4 GKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTR-----HPFLTALKY---SFQTHDRLCFVME 75 (323) T ss_pred EECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEEEE T ss_conf 20729399999988999899999983688649799999999999998679-----998895999---9998999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 76 y~~gGdL~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~------- 113 (323) T cd05571 76 YANGGELF--------------FHLSRE-RVFS--------EDRAR------------FYGAEIVSALGYLHS------- 113 (323) T ss_pred CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 35998699--------------999874-9999--------99999------------999999999999997------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++.+...-++||+.|.. T Consensus 114 ~~IiHRDLKPeNILl~~~g~iKL~DFGlak~ 144 (323) T cd05571 114 CDVVYRDLKLENLMLDKDGHIKITDFGLCKE 144 (323) T ss_pred CCCEEEEECCCCCCCCCCCCEEEEECCEEEE T ss_conf 8926754044445424689788621215452 No 137 >cd07869 STKc_PFTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D Probab=97.57 E-value=0.0034 Score=40.28 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=73.2 Q ss_pred EEEECCCCCEEEEEEEEEC-CCC-EEEEEECCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 3100466812001799943-995-899982166---99889999999999985326775551001026778752245155 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTS-KGT-FILTIYEKR---MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~---~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) -++.|..|.--+.|+.... +|+ +.+|+.... ......-.|+.+|..|.. |.+++-.+ +..-.+..+. T Consensus 9 ~~~~iG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~H-----pnIv~l~~---~~~~~~~~~l 80 (303) T cd07869 9 KLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKH-----ANIVLLHD---IIHTKETLTL 80 (303) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHCCC-----CCEEEEEE---EECCCCEEEE T ss_conf 801882387949999998899979999998344613468899999999986799-----89827988---8725985899 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|... . .+ .+....+ ...... .....+...+..+.+ T Consensus 81 v~Ey~~~~l~--------~----~~---~~~~~~l--------~~~~~~------------~~~~qll~~l~ylH~---- 121 (303) T cd07869 81 VFEYVHTDLC--------Q----YM---DKHPGGL--------HPENVK------------LFLFQLLRGLSYIHQ---- 121 (303) T ss_pred EEECCCCHHH--------H----HH---HHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 9963661389--------9----99---9656999--------999999------------999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 07774440223464225627-9604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||+++ +++. ++||+.|. T Consensus 122 ---~~IiHRDlKp~NILl~~~~~vK-i~DFGla~ 151 (303) T cd07869 122 ---RYILHRDLKPQNLLISDTGELK-LADFGLAR 151 (303) T ss_pred ---CCCEEEECCHHHEEECCCCCEE-EEECCCCC T ss_conf ---8916866675657988999899-97746523 No 138 >COG0661 AarF Predicted unusual protein kinase [General function prediction only] Probab=97.57 E-value=0.00073 Score=44.61 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=26.7 Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 777444022346422562796048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +.-|+.|+|.||+|+++..+.-..++||+-++. T Consensus 282 ~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~ 314 (517) T COG0661 282 LRDGFFHADPHPGNILVRSDGRIVLLDFGIVGR 314 (517) T ss_pred HHCCCCCCCCCCCCEEEECCCCEEEECCCCEEC T ss_conf 965951359995005771589689975753013 No 139 >cd06605 PKc_MAPKK Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residu Probab=97.57 E-value=0.0061 Score=38.66 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=76.0 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 5310046681200179994-3995-89998216699889---99999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) .-++.|..|.--+.|++.. .+|+ +.+|+.....+... +..|+.+|..| .-|.+++-.+ .....+..+ T Consensus 4 ~~i~~iG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~Ei~~l~~l-----~HpnIv~~~~---~~~~~~~~~ 75 (265) T cd06605 4 ETLGELGAGNSGVVSKVRHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC-----NSPYIVGFYG---AFYNNGDIS 75 (265) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE T ss_conf 89888111868099999998999899999984205989999999999999867-----9989890989---999899889 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+.+.+ ..++ ..... .....+...+..+.+ T Consensus 76 ivmEy~~~g~L~~-----------~~~~~~---~~~~--------e~~~~------------~i~~qi~~~l~ylH~--- 118 (265) T cd06605 76 ICMEYMDGGSLDK-----------ILKEVQ---GRIP--------ERILG------------KIAVAVLKGLTYLHE--- 118 (265) T ss_pred EEEECCCCCCHHH-----------HHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 9992689986999-----------998748---9999--------99999------------999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 10777444022346422562796048731621356 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .+|+||.|+.|.|||++.+...-++||+.|.. T Consensus 119 ---~~~iiHRDiKp~NILl~~~g~iKl~DFG~s~~ 150 (265) T cd06605 119 ---KHKIIHRDVKPSNILVNSRGEIKLCDFGVSGQ 150 (265) T ss_pred ---CCCEEEEEECCCCCCCCCCCCEEECCCCCCEE T ss_conf ---09987321056552188999989843734224 No 140 >cd05599 STKc_NDR_like STKc_NDR_like: Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This su Probab=97.57 E-value=0.0048 Score=39.30 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=71.2 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166--99889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.-. .| .|.+|+..+. ..... +..|.++|..+ ..|.+++-.+ ..+-.+..+ T Consensus 6 ik~lG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y 77 (364) T cd05599 6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA-----DNPWVVKLYY---SFQDENYLY 77 (364) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE T ss_conf 37952287849999998899989999998468814778999999999999877-----9998893999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+. ..+ ...... .....+...+..+. T Consensus 78 lvmEy~~gGdL~--------------~~l~~~-~~l--------~e~~~~------------~~~~qi~~aL~ylH---- 118 (364) T cd05599 78 LIMEYLPGGDMM--------------TLLMKK-DTF--------TEEETR------------FYIAETILAIDSIH---- 118 (364) T ss_pred EEEECCCCCCHH--------------HHHHHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH---- T ss_conf 998378897289--------------999865-999--------999999------------99999999999997---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+++||.|+.|.|||++.+...-+.||+.|. T Consensus 119 ---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~ 149 (364) T cd05599 119 ---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCT 149 (364) T ss_pred ---HCCEEECCCCCCEEEECCCCCEEEEECCCCC T ss_conf ---5765400044233799799988997267772 No 141 >cd05084 PTKc_Fes Catalytic Domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular Probab=97.56 E-value=0.0041 Score=39.75 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=69.2 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 466812001799943-99-589998216699889---9999999999853267755510010267787522451557864 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) |..|.--+.|+.... ++ .+.+|.+......+. +-.|+.+|..|. -|.+++-. | +..-.+..+.+++| T Consensus 3 iG~G~fg~Vy~~~~~~~~~~vAiK~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~l~-g--~~~~~~~~~lv~Ey 74 (252) T cd05084 3 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLMEARILKQYS-----HPNIVKLI-G--VCTQKQPIYIVMEL 74 (252) T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCCCCEE-E--EEEECCEEEEEEEC T ss_conf 7458882899999979996999999881169889999999999998579-----98997654-7--99889989999978 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. .| +.. + .... +... -.+...+...+..+.+ + T Consensus 75 ~~~G~L~~-----------~l---~~~--~------~~l~---~~~~---------~~i~~~ia~gl~yLH~-------~ 113 (252) T cd05084 75 VQGGDFLT-----------FL---RTE--G------PRLK---VKEL---------IRMAENAAAGMEYLES-------K 113 (252) T ss_pred CCCCCHHH-----------HH---HHC--C------CCCC---HHHH---------HHHHHHHHHHHHHHHH-------C T ss_conf 99992899-----------99---842--8------9999---9999---------9999999999999987-------8 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++|+|+.+.|||++.+...-+.||+.+. T Consensus 114 ~ivHrDlKp~NiLl~~~~~~kl~DFGla~ 142 (252) T cd05084 114 HCIHRDLAARNCLVTEKNVLKISDFGMSR 142 (252) T ss_pred CCCCCCCCHHHEEECCCCEEEEEECCCCE T ss_conf 94468736542898799929995552560 No 142 >cd05617 STKc_aPKC_zeta STKc_aPKC_zeta: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeas Probab=97.56 E-value=0.001 Score=43.65 Aligned_cols=136 Identities=19% Similarity=0.261 Sum_probs=69.9 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 466812001799943-99-5899982166--99889---99999999998532677555100102677875224515578 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) |..|.--+.|++... +| .|.+|+..+. ..... +..+..+|..+..+ |.+++-.. ..+-.++.+.++ T Consensus 3 LG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~h----p~Iv~l~~---~f~~~~~lylVm 75 (327) T cd05617 3 IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSN----PFLVGLHS---CFQTTSRLFLVI 75 (327) T ss_pred EEECCCCEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECCEEEEEE T ss_conf 41181909999998899979999998478875989999999999999970589----98747999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+.+ ...++ .... ......+...+..+.+ T Consensus 76 Ey~~gGdL~--------------~~l~~-~~~l~--------e~~a------------~~~~~qi~~aL~yLH~------ 114 (327) T cd05617 76 EYVNGGDLM--------------FHMQR-QRKLP--------EEHA------------RFYAAEICIALNFLHE------ 114 (327) T ss_pred ECCCCCCHH--------------HHHHH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 588998399--------------99987-49999--------9999------------9999999999999983------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 77444022346422562796048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++.+...-++||+.|.. T Consensus 115 -~gIiHRDLKPeNILld~~g~iKL~DFGlak~ 145 (327) T cd05617 115 -RGIIYRDLKLDNVLLDADGHIKLTDYGMCKE 145 (327) T ss_pred -CEEEECCCCCCCEEECCCCCEEECCCCCCHH T ss_conf -9289375556660573699677323550110 No 143 >cd05629 STKc_NDR_like_fungal STKc_NDR_like_fungal: Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play s Probab=97.55 E-value=0.0054 Score=38.99 Aligned_cols=136 Identities=21% Similarity=0.201 Sum_probs=70.6 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCC--CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-995-899982166--998899---9999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKR--MNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++... .|+ |.+|+..+. .....+ ..+.++|..+ ..|.+++-.+ ...-.+..+ T Consensus 6 lk~lG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y 77 (377) T cd05629 6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAES-----DSPWVVSLYY---SFQDAQYLY 77 (377) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE T ss_conf 27822285839999998899989999998468805889999999999999868-----9998794999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+.+ ...++ ..... .....+...+..+. T Consensus 78 lvmEy~~ggdL~~-----------~l~~----~~~~~--------e~~~~------------~~~~qi~~al~~lH---- 118 (377) T cd05629 78 LIMEFLPGGDLMT-----------MLIK----YDTFS--------EDVTR------------FYMAECVLAIEAVH---- 118 (377) T ss_pred EEEECCCCCCHHH-----------HHHH----CCCCC--------HHHHH------------HHHHHHHHHHHHHH---- T ss_conf 9995899974889-----------9986----49999--------99999------------99999999999987---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 107774440223464225627960487316213 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+|+||.|+.|.|||++.+...-++||+.| T Consensus 119 ---~~giiHRDlKPeNILl~~~g~iKL~DFGls 148 (377) T cd05629 119 ---KLGFIHRDIKPDNILIDRGGHIKLSDFGLS 148 (377) T ss_pred ---HCEEEECCCCCCEEEECCCCCEEECCCCCC T ss_conf ---472896457655589879998898126676 No 144 >cd05614 STKc_MSK2_N STKc_MSK2_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the Probab=97.55 E-value=0.00082 Score=44.28 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=71.8 Q ss_pred EECCCCCEEEEEEEEEC----CC-CEEEEEECCCC---CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 00466812001799943----99-58999821669---98---8999999999998532677555100102677875224 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS----KG-TFILTIYEKRM---NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~----~~-~yiLri~e~~~---~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +.|..|.--+.|++.-. .| .|.+|+..+.. .. +....+.++|.++..+ |.++.-. ....-++ T Consensus 6 k~LG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~~E~~il~~~~~~----p~iv~l~---~~f~~~~ 78 (332) T cd05614 6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQS----PFLVTLH---YAFQTEA 78 (332) T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE---EEEEECC T ss_conf 79513888089999985307889589999981788422178999999999999962689----9778999---9998799 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) ..+.+++|++|..+. ..+++. ..++ ..... .....+...+..+.+ T Consensus 79 ~~ylVmEy~~gG~L~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~ 123 (332) T cd05614 79 KLHLILDYVSGGEMF--------------THLYQR-DNFS--------EDEVR------------FYSGEIILALEHLHK 123 (332) T ss_pred EEEEEEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH T ss_conf 899999677999899--------------999864-9999--------99999------------999999999999987 Q ss_pred HHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 6521077744402234642256279-604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+ .+. ++||+.|. T Consensus 124 -------~gIiHRDlKPeNILl~~~g~ik-L~DFGlak 153 (332) T cd05614 124 -------LGIVYRDIKLENILLDSEGHVV-LTDFGLSK 153 (332) T ss_pred -------CCCEECCCCHHHEEECCCCCEE-EECCHHHH T ss_conf -------8865256766770035899889-60240136 No 145 >cd05626 STKc_LATS2 STKc_LATS2: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Probab=97.54 E-value=0.0033 Score=40.41 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=72.9 Q ss_pred EEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 310046681200179994-399-5899982166--99889---9999999999853267755510010267787522451 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) -++.|..|.--+.|++.- +.| .|.+|+..+. .+... +..|.++|..+.. |.+++-.+ ..+-.+.. T Consensus 5 ~ik~LG~G~fG~V~la~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~h-----p~Iv~l~~---~f~~~~~~ 76 (381) T cd05626 5 KIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADN-----EWVVKLYY---SFQDKDNL 76 (381) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEE T ss_conf 97287138784999999889998899999806785598999999999999986899-----89794999---99989999 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|..+.. .+++. ..++ .... .....++...+..+. T Consensus 77 ylvmEy~~gGdL~~--------------~l~~~-~~~~--------e~~a------------~~~~~qi~~aL~ylH--- 118 (381) T cd05626 77 YFVMDYIPGGDMMS--------------LLIRM-EVFP--------EVLA------------RFYIAELTLAIESVH--- 118 (381) T ss_pred EEEEECCCCCCHHH--------------HHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHH--- T ss_conf 99997479982878--------------77634-9999--------9999------------999999999999998--- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..|+||.|+.|.|||++.+...-++||+.|. T Consensus 119 ----~~gIiHRDLKPeNILl~~~g~iKL~DFGla~ 149 (381) T cd05626 119 ----KMGFIHRDIKPDNILIDLDGHIKLTDFGLCT 149 (381) T ss_pred ----HCCCCCCCCCCCEEEECCCCCEEECCCCCCC T ss_conf ----6667302154673678899988981567653 No 146 >cd05618 STKc_aPKC_iota STKc_aPKC_iota: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been i Probab=97.54 E-value=0.0021 Score=41.61 Aligned_cols=135 Identities=16% Similarity=0.251 Sum_probs=69.5 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCC-C-CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-5899982166-9-9889---999999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKR-M-NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~-~-~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... +| .|.+|+..+. . .... +..+..+|..+..+ |.+++-.+ ..+-.++.+.+++ T Consensus 4 G~G~fG~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~H----p~Iv~l~~---~f~~~~~lylVmE 76 (329) T cd05618 4 GRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNH----PFLVGLHS---CFQTESRLFFVIE 76 (329) T ss_pred EECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCCCEEEE---EEEECCEEEEEEE T ss_conf 0387939999999899989999998678877989999999999999971399----97795999---9998999999995 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+. ..++ ..... .....+...+..+. . T Consensus 77 y~~GGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~yLH-------~ 114 (329) T cd05618 77 YVNGGDLM--------------FHMQRQ-RKLP--------EEHAR------------FYSAEISLALNYLH-------E 114 (329) T ss_pred CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHH-------C T ss_conf 88988989--------------999874-9999--------99999------------99999999999986-------3 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++.+...-++||+.|.. T Consensus 115 ~~IiHRDLKPeNILld~~g~iKL~DFGlak~ 145 (329) T cd05618 115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE 145 (329) T ss_pred CCEEECCCCCCCCCCCCCCCEEECCCHHHHH T ss_conf 9689644572100315688566314005555 No 147 >cd06650 PKc_MEK1 MEK1 (MAPKK1 or MKK1): Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase Probab=97.54 E-value=0.005 Score=39.22 Aligned_cols=140 Identities=15% Similarity=0.229 Sum_probs=72.6 Q ss_pred EEEEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 53100466812001799943-995-8999821669988---999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) .-++.|..|.--+.|++.-. +|+ +.+|+........ .+-.|+.+|..+. -|.+++-.+ ....++..+ T Consensus 8 eii~~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~-----hpnIV~~~~---~~~~~~~~~ 79 (333) T cd06650 8 EKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECN-----SPYIVGFYG---AFYSDGEIS 79 (333) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCC-----CCCCCCEEE---EEEECCEEE T ss_conf 880276038991999999889995999999765428789999999999998679-----999991989---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+.+- ..++ .. ... .....+...+..+.. T Consensus 80 ivmEy~~gg~L~~-----------~l~~~----~~~~--------e~----~~~--------~i~~qi~~gL~ylH~--- 121 (333) T cd06650 80 ICMEHMDGGSLDQ-----------VLKKA----GRIP--------EQ----ILG--------KVSIAVIKGLTYLRE--- 121 (333) T ss_pred EEEECCCCCCHHH-----------HHHHC----CCCC--------HH----HHH--------HHHHHHHHHHHHHHH--- T ss_conf 9998389997899-----------99754----9999--------99----999--------999999999999986--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..++||.|+.|.|||++++...-++||+.|. T Consensus 122 ---~~~IiHRDIKP~NILi~~~g~vKL~DFGla~ 152 (333) T cd06650 122 ---KHKIMHRDVKPSNILVNSRGEIKLCDFGVSG 152 (333) T ss_pred ---HCCEEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf ---2887222466311799899989999788876 No 148 >cd05113 PTKc_Btk_Bmx Catalytic Domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds Probab=97.53 E-value=0.0018 Score=42.13 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=76.4 Q ss_pred EEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 310046681200179994399-5899982166-99889999999999985326775551001026778752245155786 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) -.+.|..|.--+.|+.....+ +..+|++++. ...+++-.|+++|..|.. |.++.-. | ...-.+..+.+++ T Consensus 8 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~H-----pnIV~l~-g--~~~~~~~~~lv~E 79 (256) T cd05113 8 FLKELGTGQFGVVKYGKWQGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSH-----EKLVQLY-G--VCTKQRPIYIVTE 79 (256) T ss_pred EEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEEEEE T ss_conf 806970287819999998799799999983588998999999999986799-----8976099-9--9988998999998 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+.. . |+..... +.+. ... .....+...++.+.+ T Consensus 80 y~~~G~L~~-----------~---l~~~~~~----------~~~~-~~~---------~~~~~ia~gl~yLH~------- 118 (256) T cd05113 80 YLANGCLLN-----------Y---LREGLKR----------PTPS-QLL---------EMCKDVCEGMAYLES------- 118 (256) T ss_pred CCCCCCHHH-----------H---HHHCCCC----------CCHH-HHH---------HHHHHHHHHHHHHHH------- T ss_conf 079998899-----------9---9854899----------9999-999---------999999999998705------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||+|+.+.|||++.+...-+.||+.+. T Consensus 119 ~~iiHrDlK~~NiLid~~~~~Kl~DFGls~ 148 (256) T cd05113 119 KQFIHRDLAARNCLVDSNGTVKVSDFGLSR 148 (256) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 894316577276988899979996168851 No 149 >cd06616 PKc_MKK4 Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specif Probab=97.53 E-value=0.0077 Score=38.00 Aligned_cols=147 Identities=19% Similarity=0.228 Sum_probs=72.1 Q ss_pred CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 6053100466812001799943-99-589998216699889---999999999985326775551001026778752245 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k 97 (316) +...++.|..|.--+.|+.... +| .|.+|+........+ +..+.+.+.. ...+|.+++-.+ ....++. T Consensus 5 d~~~l~~lG~G~fg~V~~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~e~~~l~~----~~~hpnIv~~~~---~~~~~~~ 77 (288) T cd06616 5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMR----SSDCPYIVKFYG---ALFREGD 77 (288) T ss_pred HCEECCEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCE T ss_conf 988832861387859999998899969999998801491899999999999998----369998888988---9987891 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.++++++|. ++.....+|...... +.. ... ......+...+..+.+ T Consensus 78 ~~ivme~~~~~------------l~~~~~~~~~~~~~~-------~~e----~~~--------~~~~~qi~~al~ylH~- 125 (288) T cd06616 78 CWICMELMDIS------------LDKFYKYVYEVLKSV-------IPE----EIL--------GKIAVATVKALNYLKE- 125 (288) T ss_pred EEEEEEECCCC------------HHHHHHHHHHHCCCC-------CCH----HHH--------HHHHHHHHHHHHHHHH- T ss_conf 79999982898------------899999998731689-------999----999--------9999999999999987- Q ss_pred HHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 521077744402234642256279-6048731621356 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) ..++||.|+.|.|||++++ .+. ++||+.|+. T Consensus 126 -----~~~IiHRDlKp~NILl~~~~~iK-l~DFGla~~ 157 (288) T cd06616 126 -----ELKIIHRDVKPSNILLDRNGNIK-LCDFGISGQ 157 (288) T ss_pred -----CCCEECCCCCHHHEEECCCCCEE-EEECCCCCC T ss_conf -----28984166760113288999789-996888543 No 150 >cd07867 STKc_CDC2L6 The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, ca Probab=97.53 E-value=0.00064 Score=44.99 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=72.1 Q ss_pred CCCCCEEEEEEEEEC---C-CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 466812001799943---9-958999821669988999999999998532677555100102677875224515578647 Q gi|254780795|r 30 IIHGVENSNFVIQTS---K-GTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316) Q Consensus 30 i~~G~~Ntny~v~t~---~-~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316) |..|.--+.|..... + ..|.+|+.+..........|+.+|..|...+ +++-.+ -....-++..+.+++|. T Consensus 9 iG~G~fg~V~~~~~~d~~~~~~vAiK~i~~~~~~~~~~rEi~iL~~l~hpn-----iv~l~~-~~~~~~~~~~~lv~e~~ 82 (317) T cd07867 9 VGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPN-----VIALQK-VFLSHSDRKVWLLFDYA 82 (317) T ss_pred EEECCCEEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCC-----CCCEEE-EEECCCCCEEEEEEECC T ss_conf 511618099999971397377999999898777289999999998778989-----982889-99627997899999727 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 88707689989999999986436753068754332311245645766752001552278899999998887652107774 Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316) Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316) +|. ..++ -+.|....... ++....... . ......+...+..+.+ .+ T Consensus 83 ~~~------l~~~-------i~~~~~~~~~~--~~~~l~~~~----i--------~~i~~qll~al~ylH~-------~~ 128 (317) T cd07867 83 EHD------LWHI-------IKFHRASKANK--KPMQLPRSM----V--------KSLLYQILDGIHYLHA-------NW 128 (317) T ss_pred CCC------HHHH-------HHHHHHHHHCC--CCCCCCHHH----H--------HHHHHHHHHHHHHHHH-------CC T ss_conf 997------8999-------88622101025--766789999----9--------9999999999999987-------89 Q ss_pred EEECCCCCCCEEEC-----CCCCEEEECCCCCC Q ss_conf 44022346422562-----79604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFY-----NNKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~-----~~~i~giIDF~~~~ 213 (316) +||.|+.|.|||+. .+.+. ++||+.|. T Consensus 129 IiHRDiKP~NILi~~~~~~~~~vK-i~DFG~a~ 160 (317) T cd07867 129 VLHRDLKPANILVMGEGPERGRVK-IADMGFAR 160 (317) T ss_pred EECCCCCCCCEEEECCCCCCCCEE-ECCCCCCE T ss_conf 552678700079823687668467-64666003 No 151 >cd06622 PKc_MAPKK_PBS2_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cer Probab=97.53 E-value=0.0028 Score=40.88 Aligned_cols=141 Identities=20% Similarity=0.258 Sum_probs=74.7 Q ss_pred EEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 3100466812001799943-99-589998216699889---999999999985326775551001026778752245155 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) -++.|..|.--+.|++... +| .+.+|.......... +..|+.+|..|. .|.+++-.+ .....+..+. T Consensus 5 il~~IG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~-----hpnIv~l~~---~~~~~~~~~i 76 (286) T cd06622 5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAV-----SPYIVDFYG---AFFIEGAVYM 76 (286) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCHHHHHHHHHHHHHHHHCC-----CCCEECCCE---EEEECCEEEE T ss_conf 98896138790999999989996999999864409899999999999998679-----998943541---8998998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. +.+...+ ....++ ... .. .....+...+..+.. T Consensus 77 vmE~~~~G~L~-----------~l~~~~~-~~~~~~--------e~~----~~--------~i~~ql~~gL~ylH~---- 120 (286) T cd06622 77 CMEYMDAGSLD-----------KLYAGGV-ATEGIP--------EDV----LR--------RITYAVVKGLKFLKE---- 120 (286) T ss_pred EEECCCCCCHH-----------HHHHHCC-CCCCCC--------HHH----HH--------HHHHHHHHHHHHHHH---- T ss_conf 99807999199-----------9986033-357899--------999----99--------999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 07774440223464225627-9604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) ..++||.|+.|.|||++. +.+. +.||+.|. T Consensus 121 --~~~IiHRDIKP~NILi~~~g~vK-l~DFG~a~ 151 (286) T cd06622 121 --EHNIIHRDVKPTNVLVNGNGQVK-LCDFGVSG 151 (286) T ss_pred --HCCEEECCCCHHHEEECCCCCEE-EEECCCCC T ss_conf --28974155777766688999899-97378886 No 152 >cd07855 STKc_ERK5 The catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphory Probab=97.53 E-value=0.003 Score=40.62 Aligned_cols=142 Identities=11% Similarity=0.169 Sum_probs=69.7 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHCCC Q ss_conf 5310046681200179994-399-589998216699----8899999999999853267-75551001026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EKDLPVFIELLHYISRNKL-PCPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gi-pvP~pi~~~~G~~~~~~~~k 97 (316) .-++.|..|.--+.|+... .+| .+.+|+..+..+ ...+-.|+.+|.+|...++ ..-..+.+.+. + ...+. T Consensus 8 ~i~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~~~~~~~~~--~-~~~~~ 84 (336) T cd07855 8 KPIETIGNGAYGVVCSAIDKKTGQKVAIKKIPNAFDVLTTAKRTLRELKILKHFKHDNIIAIKEILRPPVP--T-ADFKD 84 (336) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC--C-CCCCE T ss_conf 98279822508799999989999899999989400246789999999999986689998538888712665--4-56765 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.++++.+|. +.+ .+ +. ...++ .... ......+...+..+.+ T Consensus 85 ~yivmE~~~~~---------L~~---~i---~~-~~~l~--------e~~i------------~~~~~Qll~aL~ylH~- 127 (336) T cd07855 85 VYVVLDLMESD---------LHH---II---HS-DQPLT--------LEHV------------RYFLYQLLRGLKYIHS- 127 (336) T ss_pred EEEEEECCCCC---------HHH---HH---HH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH- T ss_conf 89999726972---------699---99---85-89999--------9999------------9999999999999988- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 52107774440223464225627960487316213 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .|+||.|+.|.|||++.+...-++||+.| T Consensus 128 ------~gIiHRDlKPeNILl~~~~~iKl~DFGla 156 (336) T cd07855 128 ------ANVLHRDLKPSNLLVNENCELKIGDFGMA 156 (336) T ss_pred ------CCCEECCCCHHHEEECCCCCEEECEECCC T ss_conf ------89412336547769869998883631100 No 153 >cd06619 PKc_MKK5 Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 ( Probab=97.52 E-value=0.0019 Score=41.88 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=72.5 Q ss_pred ECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 046681200179994-3995-899982166998---89999999999985326775551001026778752245155786 Q gi|254780795|r 29 PIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 29 ~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) -|..|.--+.|+..- .+|+ +.+|+....... ..+..|+++|..|.. |.+++-.+ ....+++.+.+++ T Consensus 8 ~iG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~~~~---~~~~~~~~~iv~E 79 (279) T cd06619 8 ILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDS-----PYIIGFYG---AFFVENRISICTE 79 (279) T ss_pred EEECCCCEEEEEEEECCCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEE T ss_conf 985178929999999999979999998843198999999999999986799-----99991979---9998999899997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. .. .+ ++. .... .....+...+..+.+ T Consensus 80 ~~~gg~L~--------~~----~~-------~~e------------~~~~--------~i~~qi~~aL~ylH~------- 113 (279) T cd06619 80 FMDGGSLD--------VY----RK-------IPE------------HVLG--------RIAVAVVKGLTYLWS------- 113 (279) T ss_pred CCCCCCHH--------HH----HC-------CCH------------HHHH--------HHHHHHHHHHHHHHH------- T ss_conf 16998599--------98----56-------899------------9999--------999999999999997------- Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 74440223464225627-9604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++. +.+ -++||+.|. T Consensus 114 ~~iiHRDiKp~NILl~~~g~v-Kl~DFGla~ 143 (279) T cd06619 114 LKILHRDVKPSNMLVNTRGQV-KLCDFGVST 143 (279) T ss_pred CCEEECCCCCCCCCCCCCCCE-EECCCCCCE T ss_conf 890535367766438899999-985583642 No 154 >cd07830 STKc_MAK_like The catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fer Probab=97.52 E-value=0.0012 Score=43.18 Aligned_cols=138 Identities=15% Similarity=0.256 Sum_probs=72.1 Q ss_pred EECCCCCEEEEEEEEE-CCCC-EEEEEECCCC-CHHHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 0046681200179994-3995-8999821669-988999--999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKGT-FILTIYEKRM-NEKDLP--VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~-~~~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|..|.--+.|++.. ++|+ |.+|+..... +.++.. .|+..|..+.. -|.+++..+ +...++..+.++ T Consensus 5 ~~iG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~l~~~~~----hpnIv~~~~---~~~~~~~~~iVm 77 (283) T cd07830 5 KQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNE----HPNIVKLKE---VFRENDELYFVF 77 (283) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEE---EEEECCEEEEEE T ss_conf 8984172869999998899989999998801389789999999999997169----998826878---998899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|.-.. ... + .....++ .... ......+...+..+.+ T Consensus 78 Ey~~g~l~~------~l~------~--~~~~~~~--------e~~i------------~~~~~Ql~~al~ylH~------ 117 (283) T cd07830 78 EYMEGNLYQ------LMK------D--RKGKPFS--------ESVI------------RSIIYQILQGLAHIHK------ 117 (283) T ss_pred ECCCCCHHH------HHH------H--CCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 688998799------998------6--2799989--------9999------------9999999999999997------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|+|||++++...-++||+.|. T Consensus 118 -~~iiHRDIKP~NILl~~~~~iKl~DFG~a~ 147 (283) T cd07830 118 -HGFFHRDLKPENLLVSGPEVVKIADFGLAR 147 (283) T ss_pred -CCCCCCCCCHHHEEECCCCCEEEEECCCCE T ss_conf -993636576799798789988997447765 No 155 >cd05625 STKc_LATS1 STKc_LATS1: Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It Probab=97.52 E-value=0.0039 Score=39.90 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=72.3 Q ss_pred EEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 3100466812001799943-99-58999821669--9889---9999999999853267755510010267787522451 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) -++.|..|.--+.|++.-. .| .|.+|+..++. ...+ +..|.++|..+. -|.+++-.. ...-.+.. T Consensus 5 ~ik~iG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~l 76 (382) T cd05625 5 KIKTLGIGAFGEVCLARKVDTGALYAMKTLRKKDVLLRNQVAHVKAERDILAEAD-----NEWVVRLYY---SFQDKDNL 76 (382) T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEE T ss_conf 9758814868399999988999899999982577324679999999999998689-----998775999---99989999 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|..+... + .+. ..++ .... ......+...+..+. T Consensus 77 ylVmEy~~gGdL~~~-----------l---~~~-~~~~--------e~~a------------~~~~~qi~~aL~~lH--- 118 (382) T cd05625 77 YFVMDYIPGGDMMSL-----------L---IRM-GIFP--------EDLA------------QFYIAELTCAVESVH--- 118 (382) T ss_pred EEEEECCCCCCHHHH-----------H---HCC-CCCC--------HHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999972599707775-----------4---125-5799--------9999------------999999999999998--- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 2107774440223464225627960487316213 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+|+||.|+.|.|||++.+...-++||+.| T Consensus 119 ----~~gIiHRDLKPeNILld~~g~iKL~DFGla 148 (382) T cd05625 119 ----KMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (382) T ss_pred ----HCCCCCCCCCCCEEEECCCCCEEEEECCCC T ss_conf ----555401557666378889998899406886 No 156 >cd06610 STKc_OSR1_SPAK Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WN Probab=97.51 E-value=0.0021 Score=41.71 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=72.2 Q ss_pred EECCCCCEEEEEEEEE--CCCCEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 0046681200179994--399589998216699---88999999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQT--SKGTFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t--~~~~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|..|.--+.|+... ++..+.+|+...... .+.+..|+++|..|.. |.+++-.. ....++..+.++ T Consensus 7 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~~---~~~~~~~~~ivm 78 (266) T cd06610 7 EVIGSGATAVVQRAICLPNGEKVAIKRIDLEKCQTSMDELRKEIQAMSLCHH-----PNVVKYYT---SFVVGDELWVVM 78 (266) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEE T ss_conf 6972274849999999899989999998779894899999999999986799-----89891999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|.++... +...... .... ... . ......+...+..+.+ T Consensus 79 E~~~~g~L~~~--------------~~~~~~~------~~~~---e~~----~-----~~~~~qi~~al~ylH~------ 120 (266) T cd06610 79 PLMSGGSCLDI--------------MKYSYPQ------GGLD---EAI----I-----ATILKEVLKGLEYLHK------ 120 (266) T ss_pred ECCCCCCHHHH--------------HHHHCCC------CCCC---HHH----H-----HHHHHHHHHHHHHHHH------ T ss_conf 67689979999--------------9862647------9999---999----9-----9999999999999997------ Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 774440223464225627-9604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .++||.|+.|.|||++. +.+. |.||+.|. T Consensus 121 -~~iiHRDiKP~NILl~~~~~vK-l~DFGla~ 150 (266) T cd06610 121 -NGQIHRDIKAGNILLDSDGSVK-LADFGVSA 150 (266) T ss_pred -CCCCCCCCCHHHEEECCCCCEE-EECCCCCE T ss_conf -8932266666667997999999-96687634 No 157 >cd06633 STKc_TAO3 Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pa Probab=97.50 E-value=0.0023 Score=41.37 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=80.8 Q ss_pred HHHHHHHHHCCCC-CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999848998-6053100466812001799943-99-5899982166--998---8999999999998532677555 Q gi|254780795|r 10 KEIQSFVQEYAIG-QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLPCPI 81 (316) Q Consensus 10 ~el~~il~~y~lg-~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gipvP~ 81 (316) .++..++.+=|.. ..+.++.|..|.--+.|+.... .| .+.+|+.... ... ..+..|+++|..|.. |. T Consensus 8 ~~~~~~~~~~dp~~~y~~l~~IG~G~fg~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-----pn 82 (313) T cd06633 8 PEIADLFYKDDPEEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKH-----PN 82 (313) T ss_pred CCHHHHCCCCCHHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CC T ss_conf 6568756077968842423896037585999999889998999999863441365999999999999997799-----89 Q ss_pred CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH Q ss_conf 10010267787522451557864788707689989999999986436753068754332311245645766752001552 Q gi|254780795|r 82 PIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE 161 (316) Q Consensus 82 pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~ 161 (316) +++-.+ ...-++..+.+++|++|... ..+ ..|. ..++ .... . T Consensus 83 IV~~~~---~~~~~~~~yivmEy~~G~~~------------~~l-~~~~--~~l~--------e~~~------------~ 124 (313) T cd06633 83 TIEYKG---CYLKEHTAWLVMEYCLGSAS------------DLL-EVHK--KPLQ--------EVEI------------A 124 (313) T ss_pred CCCEEE---EEEECCEEEEEEEECCCCHH------------HHH-HHHC--CCCC--------HHHH------------H T ss_conf 990989---99989988999996279737------------899-9836--8999--------9999------------9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 27889999999888765210777444022346422562796048731621356 Q gi|254780795|r 162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .....+...+..+.+ .++||.|+.|.|||++.+...-++||+.|.. T Consensus 125 ~i~~qil~aL~ylH~-------~~IiHRDlKp~NILl~~~g~vKl~DFG~a~~ 170 (313) T cd06633 125 AITHGALQGLAYLHS-------HNMIHRDIKAGNILLTEPGQVKLADFGSASK 170 (313) T ss_pred HHHHHHHHHHHHHHH-------CCEEECCCCHHHEEECCCCCEEEEECCCCEE T ss_conf 999999999999986-------8966530666555688999989985178664 No 158 >cd06613 STKc_MAP4K3_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-bindin Probab=97.50 E-value=0.0029 Score=40.78 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=72.8 Q ss_pred EEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 10046681200179994-3995-899982166--9988999999999998532677555100102677875224515578 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) .+.|..|.--+.|+... .+|+ +.+|+.... ...+.+..|+.+|..|... .+++-. | ...-.+..+.++ T Consensus 8 ~~~iG~G~fg~V~~~~~~~~g~~~AiK~~~~~~~~~~~~~~~Ei~il~~l~Hp-----nIv~~~-~--~~~~~~~~~ivm 79 (261) T cd06613 8 LQRIGSGTYGDVYKARDIATGELAAVKVIKLEPGDDFEIIQQEISMLKECRHP-----NIVAYF-G--SYLRRDKLWIVM 79 (261) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-E--EEEECCEEEEEE T ss_conf 10984175839999998899989999998058665799999999999867998-----999299-9--999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+.+. ..+ ..... ......+...+..+.+ T Consensus 80 Ey~~~g~L~-----------~~~~~~----~~~--------~e~~i------------~~~~~qil~aL~ylH~------ 118 (261) T cd06613 80 EYCGGGSLQ-----------DIYQVT----GPL--------SELQI------------AYVCRETLKGLAYLHS------ 118 (261) T ss_pred ECCCCCCHH-----------HHHHHC----CCC--------CHHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 797989099-----------999734----999--------99999------------9999999999999998------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-|.||+.|. T Consensus 119 -~~iiHRDiKp~NILl~~~~~vKi~DFGla~ 148 (261) T cd06613 119 -QGKIHRDIKGANILLTEDGDVKLADFGVSA 148 (261) T ss_pred -CCCEECCCCHHHEEECCCCCEEEECCCCCE T ss_conf -890534567798798899999992582665 No 159 >cd05601 STKc_CRIK STKc_CRIK: Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome Probab=97.50 E-value=0.0069 Score=38.32 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=68.9 Q ss_pred EECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 00466812001799943-99-5899982166--99889---999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|++... .| .|.+|+..+. ..... +..+.++|..+. .|.+++-.. ..+-.+..+. T Consensus 7 ~~LG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~yi 78 (330) T cd05601 7 SVIGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDIMAIAN-----SPWIPQLQY---AFQDKDNLYL 78 (330) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEE T ss_conf 68421758299999988999899999982688679899999999999998679-----998894999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. ..+.+....+ ...... .....+...+..+. T Consensus 79 vmEy~~gGdL~--------------~~l~~~~~~l--------~e~~~~------------~~~~qi~~al~yLH----- 119 (330) T cd05601 79 VMEYHPGGDLL--------------SLLNRYEDQF--------DESMAQ------------FYLAELVLAIHSLH----- 119 (330) T ss_pred EEECCCCCCHH--------------HHHHHCCCCC--------CHHHHH------------HHHHHHHHHHHHHH----- T ss_conf 99837997489--------------9998618999--------999999------------99999999999997----- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 07774440223464225627-9604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .+|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 120 --~~gIiHRDiKPeNILld~~g~iK-L~DFGla~ 150 (330) T cd05601 120 --QMGYVHRDIKPENILIDRTGHIK-LADFGSAA 150 (330) T ss_pred --HCCEEECCCCCCCEEECCCCCEE-EEECCCEE T ss_conf --48688454650003465899889-80265547 No 160 >cd07872 STKc_PCTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could Probab=97.48 E-value=0.0074 Score=38.12 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=73.8 Q ss_pred EEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 053100466812001799943-99-589998216699---8899999999999853267755510010267787522451 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) .+-++.|..|.--+.|+.... .+ .+.+|+...... ....-.|+++|..|.. |.+++-.+ +..-++.. T Consensus 8 Y~~~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~l~~---~~~~~~~~ 79 (309) T cd07872 8 YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKH-----ANIVTLHD---IVHTDKSL 79 (309) T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEE T ss_conf 78855861485929999998899979999998532222148999999999986789-----89841778---99659979 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|. . -+.+ ......+ ...... .....+...+..+.+ T Consensus 80 ~lv~Ey~~~~------L------~~~l---~~~~~~~--------~~~~~~------------~~~~qil~al~ylH~-- 122 (309) T cd07872 80 TLVFEYLDKD------L------KQYM---DDCGNIM--------SMHNVK------------IFLYQILRGLAYCHR-- 122 (309) T ss_pred EEEEECCCCC------H------HHHH---HHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH-- T ss_conf 9999634777------8------9999---9728889--------999999------------999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 21077744402234642256279-604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++++ .+. ++||+.|. T Consensus 123 -----~~IiHRDiKPeNILl~~~g~vK-l~DFGla~ 152 (309) T cd07872 123 -----RKVLHRDLKPQNLLINERGELK-LADFGLAR 152 (309) T ss_pred -----CCEEECCCCCHHEEECCCCCEE-EEEECCCH T ss_conf -----8916455750316887889787-50433311 No 161 >cd06645 STKc_MAP4K3 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA Probab=97.48 E-value=0.0039 Score=39.88 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=73.4 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 10046681200179994-399-58999821669--988999999999998532677555100102677875224515578 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) ++.|..|.--+.|+... ..| .|.+|+..... +...+..|+.+|..+.. |.+++-.+ ...-.+..+.++ T Consensus 14 ~~~iG~G~fg~Vy~~~~~~t~~~~AvK~i~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~---~~~~~~~~~ivm 85 (267) T cd06645 14 IQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKH-----SNIVAYFG---SYLRRDKLWICM 85 (267) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEEEE T ss_conf 2498328685999999889997999999947742029999999999986899-----98828999---999899899999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ++ ++.. ..++ ..... .....+...+..+.+ T Consensus 86 Ey~~~g~L~-----~~---------~~~~-~~~~--------e~~~~------------~~~~qi~~al~yLH~------ 124 (267) T cd06645 86 EFCGGGSLQ-----DI---------YHVT-GPLS--------ESQIA------------YVSRETLQGLYYLHS------ 124 (267) T ss_pred ECCCCCCHH-----HH---------HHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------ T ss_conf 736999199-----99---------9872-9999--------99999------------999999999999997------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++++...-|+||+.|. T Consensus 125 -~~iiHRDlKp~NILl~~~g~vKl~DFGls~ 154 (267) T cd06645 125 -KGKMHRDIKGANILLTDNGHVKLADFGVSA 154 (267) T ss_pred -CCCEEEECCHHHEEECCCCCEEEECCCCCE T ss_conf -793560055332798799989991386754 No 162 >cd06624 STKc_ASK Serine/threonine kinases (STKs), apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 Probab=97.48 E-value=0.0062 Score=38.59 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=73.7 Q ss_pred CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 6053100466812001799943-99-589998216699--8899999999999853267755510010267787522451 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) ++..-.-|..|.--+.|+.... ++ .+.+|....... .+.+..|+.++..|.. |.+++-.+ ...-++.. T Consensus 9 ~~~~~~vIG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~i~~~l~H-----pnIv~~~~---~~~~~~~~ 80 (268) T cd06624 9 ENGERVVLGKGTYGVVYAGRDLSTQVRIAIKEIPERDSRYSQPLHEEIALHSRLKH-----KNIVQYLG---SDSENGYF 80 (268) T ss_pred CCCCEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEE T ss_conf 79871899637482999999889995999999873585889999999999986899-----89873999---99789999 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|..+.. .+ +........ ...... .....+...+..+.+ T Consensus 81 ~iv~Ey~~gg~L~~-----------~l---~~~~~~~~~------~e~~~~------------~~~~qi~~al~ylH~-- 126 (268) T cd06624 81 KIFMEQVPGGSLSA-----------LL---RSKWGPLKD------NESTII------------FYTKQILEGLKYLHD-- 126 (268) T ss_pred EEEEECCCCCCHHH-----------HH---HHCCCCCCC------CHHHHH------------HHHHHHHHHHHHHHH-- T ss_conf 99998389996999-----------99---861689985------799999------------999999999999987-- Q ss_pred HHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 2107774440223464225627-9604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++. +.+.-++||+.|. T Consensus 127 -----~~IiHRDlKp~NiLl~~~~~~vKl~DFG~a~ 157 (268) T cd06624 127 -----NQIVHRDIKGDNVLVNTYSGVLKISDFGTSK 157 (268) T ss_pred -----CCEEECCCCCCEEEEECCCCCEEEECCCCCE T ss_conf -----9967634662138994799988994187785 No 163 >cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k Probab=97.47 E-value=0.0038 Score=40.01 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=72.8 Q ss_pred ECCCCCEEEEEEEEECCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 046681200179994399-589998216699889---9999999999853267755510010267787522451557864 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|..|.--+.|+.....+ ...+|+.......+. +-.|+.+|..|. -|.+++-. | ...-.+..+.+++| T Consensus 2 ~lG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~~~-g--~~~~~~~~~lvmEy 73 (251) T cd05041 2 KIGKGNFGDVYKGVLKGKTEVAVKTCRSTLPPDLKRKFLQEAEILKQYD-----HPNIVKLI-G--VCVQKQPIYIVMEL 73 (251) T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEEEEEEC T ss_conf 7758988489999999998999999862049789999999999998589-----99888897-8--99579989999984 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. -|+.....+ . +... -.+...+...+..+.+ . T Consensus 74 ~~~G~L~~--------------~l~~~~~~~--------~---~~~~---------~~i~~~ia~gl~yLH~-------~ 112 (251) T cd05041 74 VPGGSLLT--------------FLRKKKNRL--------T---VKKL---------LQMSLDAAAGMEYLES-------K 112 (251) T ss_pred CCCCCHHH--------------HHHHCCCCC--------C---HHHH---------HHHHHHHHHHHHHHHH-------C T ss_conf 79996899--------------997357999--------9---9999---------9999999999998832-------8 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++|+|+.+.|||++.+...-|.||+.|. T Consensus 113 ~ivHrDlKp~NiLl~~~~~~Kl~DFGla~ 141 (251) T cd05041 113 NCIHRDLAARNCLVGENNVLKISDFGMSR 141 (251) T ss_pred CCCCCCCCHHHEEECCCCCEEEEECCCCC T ss_conf 95278615400898899918981658860 No 164 >cd05594 STKc_PKB_alpha STKc_PKB_alpha: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, r Probab=97.47 E-value=0.0026 Score=41.07 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=68.2 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-5899982166--9988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... .| .|.+|+..+. ....++. .|..+|..+ .-|.+++-.. ..+-.++.+.+++ T Consensus 4 G~G~fG~V~l~~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~Hp~Iv~l~~---~f~~~~~lylVmE 75 (324) T cd05594 4 GKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS-----RHPFLTALKY---SFQTHDRLCFVME 75 (324) T ss_pred EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHC-----CCCCEEEEEE---EEEECCEEEEEEE T ss_conf 6173849999998899989999998278864879999999999999868-----9998817999---9998999999996 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+.. .+.+. ..|+ ..... .....+...+..+.. . T Consensus 76 y~~gGdL~~--------------~l~~~-~~~~--------e~~~~------------~~~~qi~~aL~yLHs------~ 114 (324) T cd05594 76 YANGGELFF--------------HLSRE-RVFS--------EDRAR------------FYGAEIVSALDYLHS------E 114 (324) T ss_pred CCCCCCHHH--------------HHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------H T ss_conf 779984766--------------67516-8899--------99999------------999999999999998------3 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 74440223464225627-96048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++. +.+. ++||+.|.. T Consensus 115 ~~IiHRDLKPeNILl~~~g~iK-L~DFGlak~ 145 (324) T cd05594 115 KNVVYRDLKLENLMLDKDGHIK-ITDFGLCKE 145 (324) T ss_pred CCEECCCCCCCCCCCCCCCCEE-ECCHHHHHH T ss_conf 7971143456555647888773-122134343 No 165 >cd07875 STKc_JNK1 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes Probab=97.47 E-value=0.0025 Score=41.19 Aligned_cols=140 Identities=15% Similarity=0.201 Sum_probs=70.0 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCE Q ss_conf 10046681200179994-399-5899982166-998---8999999999998532677-555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|+..- ..| .+.+|+..+. .+. ..+-.|+.+|..|...+|- .-..... ...+.. ....+ T Consensus 29 ~~~IG~G~fG~V~~a~d~~t~~~vAIK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIV~l~~~~~~--~~~~~~-~~~~y 105 (364) T cd07875 29 LKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTP--QKSLEE-FQDVY 105 (364) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCCC-CCEEE T ss_conf 089601638699999988999899999989224296899999999999986799599958899940--675554-78189 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .++++++|.- +..+ + . .++ ..... .....+...+..+.+ T Consensus 106 iV~E~~~~~L--------~~~i-~------~---~l~--------~~~i~------------~i~~Qil~al~ylH~--- 144 (364) T cd07875 106 IVMELMDANL--------CQVI-Q------M---ELD--------HERMS------------YLLYQMLCGIKHLHS--- 144 (364) T ss_pred EEEECCCCCH--------HHHH-H------H---CCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 9995679878--------9998-7------3---399--------99999------------999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 10777444022346422562796048731621356 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .|+||.|+.|.|||++.+...-|+||+.|.. T Consensus 145 ----~~IiHRDlKP~NILl~~~~~iKi~DFGlAr~ 175 (364) T cd07875 145 ----AGIIHRDLKPSNIVVKSDCTLKILDFGLART 175 (364) T ss_pred ----CCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf ----8834446888887888899889832123523 No 166 >cd05621 STKc_ROCK2 STKc_ROCK2: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain Probab=97.47 E-value=0.0017 Score=42.23 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=76.2 Q ss_pred CCCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 9986053100466812001799943-99-5899982166--99---8899999999999853267755510010267787 Q gi|254780795|r 20 AIGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316) Q Consensus 20 ~lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316) .+....-++-|..|.--+.|++.-. +| .|.+|+..+. .. ...+..|.++|..+.. |.+++-.. .+ T Consensus 41 ~~dDFeiik~IG~GsFG~V~lv~~k~tg~~yAiK~i~K~~~~~~~~~~~~~~E~~il~~~~h-----p~IV~l~~---~F 112 (370) T cd05621 41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS-----PWVVQLFC---AF 112 (370) T ss_pred CHHHCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EE T ss_conf 75400586688507684899999989998999999988996436789999999999985799-----98891899---99 Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 52245155786478870768998999999998643675306875433231124564576675200155227889999999 Q gi|254780795|r 93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316) Q Consensus 93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316) +-.+..+.+++|++|..+. ..+ .+ .+++ .... .....++...+. T Consensus 113 qd~~~lylVmEy~~GGdL~-----------~ll---~~--~~~~--------E~~a------------~~y~~qi~~AL~ 156 (370) T cd05621 113 QDDKYLYMVMEYMPGGDLV-----------NLM---SN--YDVP--------EKWA------------KFYTAEVVLALD 156 (370) T ss_pred EECCEEEEEEECCCCCCHH-----------HHH---HC--CCCC--------HHHH------------HHHHHHHHHHHH T ss_conf 8499899998589997499-----------998---81--8989--------9999------------999999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 8887652107774440223464225627960487316213 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+.+ +++||.|+.|.|||++.+...-+.||+.| T Consensus 157 yLH~-------~~IiHRDLKPeNILld~~g~iKL~DFGla 189 (370) T cd05621 157 AIHS-------MGLIHRDVKPDNMLLDKHGHLKLADFGTC 189 (370) T ss_pred HHHH-------CCEEECCCCCCCCCCCCCCCEEECCCCEE T ss_conf 9853-------86785666732212258887353245215 No 167 >cd07870 STKc_PFTAIRE2 The catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal re Probab=97.47 E-value=0.008 Score=37.89 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=74.0 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 5310046681200179994-3995-899982166998---8999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +-++.|..|.--+.|.... .+|+ |.+|+...+... ...-.|+.+|..|+. |.+++-.+ +..-++..+ T Consensus 8 ~~~~~lG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~H-----pnIv~l~~---~~~~~~~~~ 79 (291) T cd07870 8 LNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKH-----ANIVLLHD---IIHTKETLT 79 (291) T ss_pred EEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHCCC-----CCEEEEEE---CCCCCCEEE T ss_conf 7868931372809999998899979999998320012307899999999986799-----99877831---015786589 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|... +.+.+ | ..+++ .... ......+...+..+.+ T Consensus 80 lv~Ey~~~~l~------------~~~~~-~--~~~l~--------~~~i------------~~~~~Qil~aL~ylH~--- 121 (291) T cd07870 80 FVFEYMHTDLA------------QYMIQ-H--PGGLH--------PYNV------------RLFMFQLLRGLAYIHG--- 121 (291) T ss_pred EEEECCCCHHH------------HHHHH-C--CCCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 99973572458------------99996-6--79999--------9999------------9999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +++. ++||+.|. T Consensus 122 ----~~IiHRDlKPeNILi~~~~~vK-l~DFGla~ 151 (291) T cd07870 122 ----QHILHRDLKPQNLLISYLGELK-LADFGLAR 151 (291) T ss_pred ----CCCEECCCCHHHEEECCCCCEE-EEEECCCC T ss_conf ----8834144871325787899889-98752430 No 168 >cd05589 STKc_PKN STKc_PKN: Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, ce Probab=97.47 E-value=0.0036 Score=40.15 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=74.4 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166--9988---999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++... .| .|.+|+..+. .... .+..+.++|..++.. .-|.+++-.+ ...-.+..+ T Consensus 4 l~~lG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~--~HP~Iv~l~~---~f~~~~~~y 78 (324) T cd05589 4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSE--RHPFLVNLFA---CFQTEDHVC 78 (324) T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEE---EEEECCEEE T ss_conf 99982273819999999999989999998578842747999999999999998647--9999894999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..++. ..++ ..... .....+...+..+.+ T Consensus 79 lvmEy~~gGdL~--------------~~i~~--~~l~--------e~~~~------------~~~~qi~~aL~ylH~--- 119 (324) T cd05589 79 FVMEYAAGGDLM--------------MHIHT--DVFS--------EPRAV------------FYAACVVLGLQYLHE--- 119 (324) T ss_pred EEEECCCCCCHH--------------HHHHC--CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999779998699--------------99743--8999--------99999------------999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 10777444022346422562796048731621356 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++.+...-++||+.|.. T Consensus 120 ----~~IiHRDlKPeNILl~~~g~iKL~DFGlak~ 150 (324) T cd05589 120 ----NKIVYRDLKLDNLLLDTEGYVKIADFGLCKE 150 (324) T ss_pred ----CCEEEEECCCCCCCCCCCCCEEEEECCHHHH T ss_conf ----8988985365442136899889965111121 No 169 >cd07868 STKc_CDK8 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating R Probab=97.47 E-value=0.00074 Score=44.59 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=70.3 Q ss_pred CCCCCEEEEEEEEEC----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 466812001799943----9958999821669988999999999998532677555100102677875224515578647 Q gi|254780795|r 30 IIHGVENSNFVIQTS----KGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316) Q Consensus 30 i~~G~~Ntny~v~t~----~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316) |..|.--+.|+.... +..|.+|+.++.......-.|+.+|..|.. |.+++-.+ -.....++..+.+++|. T Consensus 9 iG~G~fg~V~~~~~~d~~~~~~~AiK~i~~~~~~~~~~rEi~iL~~l~h-----pniv~l~~-~~~~~~~~~~~lv~e~~ 82 (317) T cd07868 9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKH-----PNVISLQK-VFLSHADRKVWLLFDYA 82 (317) T ss_pred EEECCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEEEEEEECC T ss_conf 4106181999999842863849999998988785899999999986799-----89984889-99707997799999627 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 88707689989999999986436753068754332311245645766752001552278899999998887652107774 Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316) Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316) +|. .. . .+ +.|+...... ++..+.... . ......+...+..+.+ .+ T Consensus 83 ~~~------L~---~---~~-~~~~~~~~~~--~~~~l~~~~----i--------~~~~~qil~al~ylH~-------~~ 128 (317) T cd07868 83 EHD------LW---H---II-KFHRASKANK--KPVQLPRGM----V--------KSLLYQILDGIHYLHA-------NW 128 (317) T ss_pred CCC------HH---H---HH-HHHHCCCCCC--CCCCCCHHH----H--------HHHHHHHHHHHHHHHH-------CC T ss_conf 997------89---9---99-8722010015--766789999----9--------9999999999999987-------89 Q ss_pred EEECCCCCCCEEEC-----CCCCEEEECCCCCC Q ss_conf 44022346422562-----79604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFY-----NNKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~-----~~~i~giIDF~~~~ 213 (316) +||.|+.|.|||+. .+.+. |+||+.|. T Consensus 129 IiHRDlKP~NILi~~~~~~~~~vK-i~DFG~a~ 160 (317) T cd07868 129 VLHRDLKPANILVMGEGPERGRVK-IADMGFAR 160 (317) T ss_pred EEECCCCCCEEEEECCCCCCCCEE-ECCCCCCE T ss_conf 660578702078723688778578-73565025 No 170 >smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Probab=97.47 E-value=0.0066 Score=38.44 Aligned_cols=138 Identities=19% Similarity=0.254 Sum_probs=73.5 Q ss_pred EECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 00466812001799943-99-5899982166998---8999999999998532677555100102677875224515578 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) +.|..|.--+.|+..-. ++ .+.+|+....... ..+..|+++|..|.. |.+++-.+ ...-.+..+.++ T Consensus 5 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~h-----pnIv~~~~---~~~~~~~~~ivm 76 (225) T smart00221 5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKH-----PNIVKLYG---VFEDPEPLYLVM 76 (225) T ss_pred EEEECCCCCEEEEEEECCCCCEEEEEEEEHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEE T ss_conf 9983288929999999999989999998354098899999999999997799-----89981877---987899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|.++.. .+ ... + ........ ......+...+..+.+ T Consensus 77 Ey~~~G~L~~-----------~l---~~~--~------~~~~~~~~------------~~~~~qi~~gl~~lH~------ 116 (225) T smart00221 77 EYCEGGDLFD-----------YL---RKK--G------GKLSEEEA------------RFYLRQILEALEYLHS------ 116 (225) T ss_pred ECCCCCCHHH-----------HH---HHC--C------CCCCHHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 8779990899-----------99---976--9------99999999------------9999999999999997------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 77444022346422562796048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) ++++|.|+.|.|||++.+...-++||+.|.. T Consensus 117 -~~iiHrDiKp~NIl~~~~~~~kl~DFG~a~~ 147 (225) T smart00221 117 -LGIVHRDLKPENILLGMDGLVKLADFGLARF 147 (225) T ss_pred -CCEEECCCCHHHEEECCCCCEEEEECCCCEE T ss_conf -9967452777887998999899996677778 No 171 >cd05612 STKc_PRKX_like STKc_PRKX_like: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell Probab=97.46 E-value=0.0021 Score=41.64 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=75.0 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166--99---88999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++... +| .|.+|+..+. .. .+.+..|+.+|..|.. |.+++-.+ ...-.+..+ T Consensus 6 i~~lG~G~fg~V~~a~~~~t~~~~AiK~i~~~~~~~~~~~~~~~~E~~il~~l~H-----p~Iv~l~~---~~~~~~~~y 77 (291) T cd05612 6 IETLGTGTFGRVYLVRHKASGAYYALKVLAIPEVIRLKQVEHVHNEKSILSEISH-----PFIVNMYW---TFHDDKFLY 77 (291) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 8995138891999999889998999999857780598999999999999987799-----89890999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+.+. ..++ ..... .....+...+..+.+ T Consensus 78 ivmEy~~gg~L~~--------------~i~~~-~~l~--------e~~~~------------~~~~qi~~aL~ylH~--- 119 (291) T cd05612 78 MLMEYVPGGELFS--------------YLRKA-GKFS--------NSTAR------------FYAAEIVCALEYLHS--- 119 (291) T ss_pred EEEECCCCCCHHH--------------HHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 9997889982899--------------99873-9999--------99999------------999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +++. ++||+.|. T Consensus 120 ----~~IiHRDlKP~NIll~~~g~vK-l~DFG~a~ 149 (291) T cd05612 120 ----KEIVYRDLKPENLLLDKEGHIK-ITDFGFAK 149 (291) T ss_pred ----CCCEECCCCCCCCCCCCCCCEE-ECCCCCEE T ss_conf ----7974143266553236999789-63241004 No 172 >PTZ00266 NIMA-related protein kinase; Provisional Probab=97.46 E-value=0.0011 Score=43.40 Aligned_cols=156 Identities=13% Similarity=0.230 Sum_probs=78.7 Q ss_pred CCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 986053100466812001799943-99-5899982166-99---889999999999985326775551001026778752 Q gi|254780795|r 21 IGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 21 lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +|...-++.|..|.--+.|++... +| .|.+|+.... .. ...+..|+.+|..|.... +|+-.+ .....- T Consensus 8 ignYelle~IG~GsFG~VylAr~k~Tg~~vAiK~I~~~~l~~k~r~~l~~Ei~ILk~L~HPn-----IVk~yd-~f~d~~ 81 (484) T PTZ00266 8 IANYTVVNRIGSGRFGEVFLVRHKHTGQLFCWKVVAYKGLSDKEKQQLVMEVNVIRELNHPN-----IVRYID-RMIDKR 81 (484) T ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCC-----CCCEEE-EEEECC T ss_conf 66807705962477829999998789989999997556679999999999999999779999-----973889-999479 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) .+..+.+++|++|..+ +..+-+.......++ ..... .....+...+..+ T Consensus 82 ~~~lyIVMEYc~GGDL-----------~~~I~~~~~~~~~l~--------E~~i~------------~i~~QLl~AL~yL 130 (484) T PTZ00266 82 RQLLYILMEYCDAGDL-----------GENMRQFYKHYKLVN--------EQVIF------------DIALQLIFALAYC 130 (484) T ss_pred CCEEEEEEECCCCCCH-----------HHHHHHHHHHCCCCC--------HHHHH------------HHHHHHHHHHHHH T ss_conf 9989999948899818-----------999999986068999--------99999------------9999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCC--------CEEEECCCCCC Q ss_conf 8765210777444022346422562796--------04873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNK--------IMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~--------i~giIDF~~~~ 213 (316) .......-..++||.|+.|.|||+..+. +.-|+||+.|. T Consensus 131 H~~~~~~~s~~IIHRDLKPeNILL~~~~~~dg~~~~viKL~DFGLAk 177 (484) T PTZ00266 131 HNCKSGTKTGKVLHRDLKPQNILLSTKHNKDGNKSYVCKIGDFGLCR 177 (484) T ss_pred HHCCCCCCCCCEECCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCE T ss_conf 72544345588761788779878535766567767506897656751 No 173 >cd07873 STKc_PCTAIRE1 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and ma Probab=97.45 E-value=0.007 Score=38.25 Aligned_cols=138 Identities=13% Similarity=0.158 Sum_probs=73.5 Q ss_pred EEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 53100466812001799943-99-589998216699---88999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +-++.|..|.--+.|+.... +| .+.+|+...... ....-.|+++|..|.. |.+|+-.+ +...++..+ T Consensus 9 ~~~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~ 80 (301) T cd07873 9 IKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKH-----ANIVTLHD---IIHTEKSLT 80 (301) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEE T ss_conf 8733872376929999998899989999998543323138899999999987799-----99764989---994499789 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|. +-+.+ ......++ .... ......+...+..+.+ T Consensus 81 lV~Ey~~~~------------L~~~l---~~~~~~~~--------~~~i------------~~~~~Qll~al~ylH~--- 122 (301) T cd07873 81 LVFEYLDKD------------LKQYL---DDCGNSIN--------MHNV------------KLFLFQLLRGLNYCHR--- 122 (301) T ss_pred EEEECCCHH------------HHHHH---HHCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 999636666------------99999---97289899--------9999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||+++ +.+. ++||+.|. T Consensus 123 ----~gIiHRDiKPeNILl~~~~~iK-l~DFGla~ 152 (301) T cd07873 123 ----RKVLHRDLKPQNLLINERGELK-LADFGLAR 152 (301) T ss_pred ----CCCEECCCCHHHEEECCCCCEE-EEECCCCH T ss_conf ----8907642761335888999889-99727503 No 174 >cd05052 PTKc_Abl Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays Probab=97.45 E-value=0.0042 Score=39.72 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=75.7 Q ss_pred EEECCCCCEEEEEEEEECC-C-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 1004668120017999439-9-589998216-699889999999999985326775551001026778752245155786 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) .+.|..|.--+.|+-.... | .+.+|+... ....+++-.|+.+|..|.. |.+++-. | ....++..+.+++ T Consensus 11 ~~~iG~G~fG~Vyk~~~~~~~~~VAvK~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~-g--~~~~~~~~~iv~E 82 (263) T cd05052 11 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH-----PNLVQLL-G--VCTREPPFYIITE 82 (263) T ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEEEEE T ss_conf 459840788299999988999499999988875619999999999985799-----9998588-9--9946998999998 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|.++. . -++..... . . .+... -.+...+...+..+.+ T Consensus 83 y~~~G~L~-----------~---~l~~~~~~-------~--~-~~~~~---------~~ia~qia~gl~yLH~------- 122 (263) T cd05052 83 FMTYGNLL-----------D---YLRECNRQ-------E--V-NAVVL---------LYMATQISSAMEYLEK------- 122 (263) T ss_pred CCCCCCHH-----------H---HHHHCCCC-------C--C-CHHHH---------HHHHHHHHHHHHHHHH------- T ss_conf 27999089-----------9---99756988-------8--9-99999---------9999999999999965------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++++...-|.||+.+. T Consensus 123 ~~iiHrDLK~~NiLl~~~~~vKl~DFGls~ 152 (263) T cd05052 123 KNFIHRDLAARNCLVGENHLVKVADFGLSR 152 (263) T ss_pred CCCCCCCCCCCCEEECCCCCEEEEECCCCE T ss_conf 895357566020567799949998667655 No 175 >cd06627 STKc_Cdc7_like Serine/threonine kinases (STKs), cell division control protein 7 (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in Probab=97.45 E-value=0.0037 Score=40.04 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=72.5 Q ss_pred CCCCCEEEEEEEEE-CCCC-EEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 46681200179994-3995-899982166-9988---9999999999985326775551001026778752245155786 Q gi|254780795|r 30 IIHGVENSNFVIQT-SKGT-FILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 30 i~~G~~Ntny~v~t-~~~~-yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) |..|.--+.|+... .+|+ +.+|+.... ...+ .+..|+++|..|.. |.+++-.+ ...-++..+.+++ T Consensus 8 lG~G~fg~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~~---~~~~~~~~~ivmE 79 (254) T cd06627 8 IGKGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLNH-----PNIVKYIG---SVKTSDSLYIILE 79 (254) T ss_pred EECCCCCEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEE T ss_conf 721768199999988999799999986576998999999999999986799-----89995999---9998999999996 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|.++. +.+ ++. ..++ .... ......+...+..+.+ T Consensus 80 y~~gg~L~-----------~~l---~~~-~~l~--------e~~~------------~~~~~qi~~al~ylH~------- 117 (254) T cd06627 80 YAENGSLR-----------QII---KKF-GKFP--------ESLV------------AVYVYQVLQGLAYLHE------- 117 (254) T ss_pred CCCCCCHH-----------HHH---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 87998499-----------999---874-9999--------9999------------9999999999999998------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-++||+.|. T Consensus 118 ~~IiHRDiKp~NILl~~~g~vKl~DFGla~ 147 (254) T cd06627 118 QGVIHRDIKAANILTTKDGVVKLADFGVAT 147 (254) T ss_pred CCEEEEECCHHHEEECCCCCEEEECCCCCE T ss_conf 994871147787788799998992588843 No 176 >cd05580 STKc_PKA STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It pl Probab=97.44 E-value=0.0033 Score=40.40 Aligned_cols=136 Identities=16% Similarity=0.230 Sum_probs=73.3 Q ss_pred EECCCCCEEEEEEEEEC-CCC-EEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 00466812001799943-995-8999821669--988---9999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KGT-FILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|++... +|+ |.+|+..+.. ... .+..|+.+|..|.. |.+++-.+ ..+-.+..+. T Consensus 7 ~~lG~G~fg~V~~a~~~~t~~~vAiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----pnIv~l~~---~~~~~~~~yi 78 (290) T cd05580 7 KTLGTGSFGRVMLVKHKGTGKYYAMKILSKAKIVKLKQVEHVLNEKRILQAVRH-----PFLVNLLG---SFKDNSNLYM 78 (290) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE T ss_conf 998327683999999989998999999856883377899999999999986799-----89990999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+.. .+ .+ ...++ ..... .....+...+..+.+ T Consensus 79 vmEy~~gg~L~~-----------~l---~~-~~~l~--------e~~~~------------~~~~Qi~~aL~ylH~---- 119 (290) T cd05580 79 VMEFVPGGELFS-----------LL---RR-SGRFP--------EPVAR------------FYAAQVVLALEYLHS---- 119 (290) T ss_pred EEECCCCCCHHH-----------HH---HH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 995899989899-----------99---87-49999--------99999------------999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 120 ---~~IiHRDiKpeNILl~~~g~iKL~DFG~a~ 149 (290) T cd05580 120 ---LDIVYRDLKPENLLLDSDGYIKITDFGFAK 149 (290) T ss_pred ---CCEEEEECCCCCCCCCCCCCEEEEECCCCE T ss_conf ---892420236433330689988980055336 No 177 >cd05582 STKc_RSK_N STKc_RSK_N: Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein ki Probab=97.44 E-value=0.0018 Score=42.14 Aligned_cols=136 Identities=20% Similarity=0.278 Sum_probs=70.4 Q ss_pred EECCCCCEEEEEEEEE----CCCC-EEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 0046681200179994----3995-899982166-9988---99999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQT----SKGT-FILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t----~~~~-yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +-|..|.--+.|++.. +.|+ |.+|+..+. .... ....|.++|..| .-|.+++-.. ..+-.++. T Consensus 2 k~iG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~E~~il~~l-----~Hp~Iv~l~~---~f~~~~~l 73 (318) T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEV-----NHPFIVKLHY---AFQTEGKL 73 (318) T ss_pred CEECCCCCCEEEEEEEEECCCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEE T ss_conf 675018980899999700078891899999835766867899999999999877-----9998891999---99989989 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|..+. ..+.+. ..+ ...... .....+...+..+.+ T Consensus 74 ylvmEy~~gGdL~--------------~~l~~~-~~l--------~e~~~~------------~~~~qi~~aL~ylH~-- 116 (318) T cd05582 74 YLILDFLRGGDLF--------------TRLSKE-VMF--------TEEDVK------------FYLAELALALDHLHS-- 116 (318) T ss_pred EEEEECCCCCCHH--------------HHHHCC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH-- T ss_conf 9999558998487--------------763016-899--------999999------------999999999999987-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 117 -----~~IiHRDlKPeNILld~~g~iKL~DFGlak 146 (318) T cd05582 117 -----LGIIYRDLKPENILLDEEGHIKLTDFGLSK 146 (318) T ss_pred -----CCCEEEEECCCCCCCCCCCCEEECCCCHHH T ss_conf -----898721014544541788988642312202 No 178 >cd07871 STKc_PCTAIRE3 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical fila Probab=97.44 E-value=0.0094 Score=37.44 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=72.5 Q ss_pred EEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 53100466812001799943-99-589998216699---88999999999998532677555100102677875224515 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) .-++.|..|.--+.|+.... .| .+.+|+...... ....-.|+.+|..|.. |.+++-.+ +..-++..+ T Consensus 8 ~~~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~~---~~~~~~~~~ 79 (288) T cd07871 8 VKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKH-----ANIVTLHD---IIHTERCLT 79 (288) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCC-----CCEEEEEE---EECCCCEEE T ss_conf 8821870486929999998899989999998343223038999999999986789-----99722411---134798689 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|. +.+ .+ ......+ ...... .....+...+..+.+ T Consensus 80 lv~E~~~~~---------l~~---~l---~~~~~~~--------~~~~~~------------~~~~qil~al~ylH~--- 121 (288) T cd07871 80 LVFEYLDSD---------LKQ---YL---DNCGNLM--------SMHNVK------------IFMFQLLRGLSYCHK--- 121 (288) T ss_pred EEEECCCCH---------HHH---HH---HHCCCCC--------CHHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999667605---------999---99---8648989--------999999------------999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||+++ +++. ++||+.|. T Consensus 122 ----~~IiHRDiKPeNILi~~~~~vK-l~DFGla~ 151 (288) T cd07871 122 ----RKILHRDLKPQNLLINEKGELK-LADFGLAR 151 (288) T ss_pred ----CCEEEEECCCHHEEECCCCCEE-EEEECCCC T ss_conf ----8927712450214787999789-91735550 No 179 >cd05588 STKc_aPKC STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytos Probab=97.44 E-value=0.0028 Score=40.79 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=70.1 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 466812001799943-99-5899982166--99889---99999999998532677555100102677875224515578 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) |..|.--+.|++... +| .|.+|+..+. ..... +..+..+|..+.++ |.+++-.+ ..+-.++.+.++ T Consensus 3 LG~G~fG~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~H----p~Iv~l~~---~f~~~~~lylvm 75 (329) T cd05588 3 IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNH----PFLVGLHS---CFQTESRLFFVI 75 (329) T ss_pred EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCCCEEEE---EEEECCEEEEEE T ss_conf 30387939999998899989999998378877989999999999999971599----98795999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+... ..++ .... ......+...+..+.+ T Consensus 76 Ey~~GGdL~--------------~~l~~~-~~l~--------e~~a------------~~~~~qi~~aL~ylH~------ 114 (329) T cd05588 76 EFVSGGDLM--------------FHMQRQ-RKLP--------EEHA------------RFYSAEISLALNFLHE------ 114 (329) T ss_pred ECCCCCCHH--------------HHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 588988689--------------999874-9999--------9999------------9999999999999986------ Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 774440223464225627-96048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++. +.+. ++||+.|.. T Consensus 115 -~gIiHRDlKPeNILld~~g~iK-L~DFGlak~ 145 (329) T cd05588 115 -RGIIYRDLKLDNVLLDAEGHIK-LTDYGMCKE 145 (329) T ss_pred -CCCCCCCCCCCCEEECCCCCEE-ECCCCCCCC T ss_conf -5872363264210364789775-233220110 No 180 >cd05600 STKc_Sid2p_Dbf2p STKc_Sid2p_Dbf2p: Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) a Probab=97.44 E-value=0.0064 Score=38.53 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=71.6 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-58999821669--9889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.-. +| .|.+|+..+.. ...+ +..|.++|..+. .|.+++-.+ ...-.+..+ T Consensus 6 i~~iG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~d~~~ly 77 (333) T cd05600 6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTK-----SEWLVKLLY---AFQDDEYLY 77 (333) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEE T ss_conf 578331788499999988999899999985788658799999999999998679-----999885999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+.. .+.. ...+ ...... ....++...+..+. T Consensus 78 lvmEy~~gGdL~~--------------~l~~-~~~l--------~e~~a~------------~~~~qil~aL~ylH---- 118 (333) T cd05600 78 LAMEYVPGGDFRT--------------LLNN-LGVL--------SEDHAR------------FYMAEMFEAVDALH---- 118 (333) T ss_pred EEEECCCCCCHHH--------------HHHH-CCCC--------CHHHHH------------HHHHHHHHHHHHHH---- T ss_conf 9997379981999--------------9987-5999--------999999------------99999999999998---- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .+|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 119 ---~~~IiHRDLKPeNILl~~~g~iK-L~DFGlak 149 (333) T cd05600 119 ---ELGYIHRDLKPENFLIDASGHIK-LTDFGLSK 149 (333) T ss_pred ---HCCEEEEECCCCCCCCCCCCCEE-EEECCCCC T ss_conf ---58689862476542326789889-98766454 No 181 >cd06611 STKc_SLK_like Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the Probab=97.43 E-value=0.0051 Score=39.17 Aligned_cols=137 Identities=19% Similarity=0.285 Sum_probs=74.9 Q ss_pred EEECCCCCEEEEEEEEECC-CC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 1004668120017999439-95-89998216699889---9999999999853267755510010267787522451557 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-GT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) ++.|..|.--+.|+....+ ++ +.+|+...+ +... +..|+++|..|. -|.+|+-.+ .....+..+.+ T Consensus 10 ~~~iG~G~fg~V~~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~Ei~il~~l~-----HpnIv~l~~---~~~~~~~~~iv 80 (280) T cd06611 10 IGELGDGAFGKVYKAQHKETGLFAAAKIIQIE-SEEELEDFMVEIDILSECK-----HPNIVGLYE---AYFYENKLWIL 80 (280) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEECC-CHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEE T ss_conf 25980277849999998899969999998108-9899999999999998679-----989990999---99989989999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|..+.. .+.+.+ ..++ ..... .....+...+..+.+ T Consensus 81 mE~~~gg~L~~-----------~l~~~~---~~~~--------e~~~~------------~i~~qi~~al~ylH~----- 121 (280) T cd06611 81 IEFCDGGALDS-----------IMLELE---RGLT--------EPQIR------------YVCRQMLEALNFLHS----- 121 (280) T ss_pred EECCCCCCHHH-----------HHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH----- T ss_conf 97689995999-----------999748---9989--------99999------------999999999999998----- Q ss_pred CCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 7774440223464225627-96048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||+.. +.+. |.||+.+.. T Consensus 122 --~~iiHRDIKp~NILl~~~~~vK-l~DFG~s~~ 152 (280) T cd06611 122 --HKVIHRDLKAGNILLTLDGDVK-LADFGVSAK 152 (280) T ss_pred --CCCCEEECCHHHEEECCCCCEE-EEECCCCEE T ss_conf --8980330762651256899999-952777616 No 182 >cd07856 STKc_Sty1_Hog1 The catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic Probab=97.43 E-value=0.0044 Score=39.60 Aligned_cols=141 Identities=17% Similarity=0.214 Sum_probs=72.3 Q ss_pred CEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 605310046681200179994-3995-8999821669----988999999999998532677555100102677875224 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRM----NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~----~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +-.-++.|..|.--+.|+..- .+|+ +.+|+..+.. ....+..|+++|..|....+ ++-.+ .+..-.+ T Consensus 11 rY~i~~~IG~G~fg~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~iL~~l~HpnI-----V~l~~--~f~~~~~ 83 (328) T cd07856 11 RYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENI-----ISLSD--IFISPLE 83 (328) T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCE-----EEEEE--EEECCCC T ss_conf 6288179723718499999988999899999987111596899999999999986689898-----31677--9981897 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) ..+.++++. |.. |.++- +.-+ ...... ......+...+..+.+ T Consensus 84 ~~~iv~e~~-g~~---------------L~~~l---~~~~------l~~~~~------------~~~~~Qil~aL~yLH~ 126 (328) T cd07856 84 DIYFVTELL-GTD---------------LHRLL---TSRP------LEKQFI------------QYFLYQILRGLKYVHS 126 (328) T ss_pred EEEEEEECC-CCC---------------HHHHH---HCCC------CCHHHH------------HHHHHHHHHHHHHHHH T ss_conf 099999366-687---------------99999---7299------999999------------9999999999999987 Q ss_pred HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 65210777444022346422562796048731621356 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++++...-++||+.|.. T Consensus 127 -------~~IiHRDIKPeNILl~~~~~vKL~DFGla~~ 157 (328) T cd07856 127 -------AGVVHRDLKPSNILINENCDLKICDFGLARI 157 (328) T ss_pred -------CCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf -------8855666755886888999869996777754 No 183 >cd06646 STKc_MAP4K5 Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MA Probab=97.43 E-value=0.0064 Score=38.53 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=72.9 Q ss_pred EECCCCCEEEEEEEE-ECCCC-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 004668120017999-43995-899982166--99889999999999985326775551001026778752245155786 Q gi|254780795|r 28 QPIIHGVENSNFVIQ-TSKGT-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 28 ~~i~~G~~Ntny~v~-t~~~~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) +.|..|.--+.|+.. +.+|+ +.+|+.... .+...+..|+.+|..|...+| ++-. | ...-.+..+.+++ T Consensus 15 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~~~-~--~~~~~~~~~lvmE 86 (267) T cd06646 15 QRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNI-----VAYF-G--SYLSREKLWICME 86 (267) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE-----EEEE-E--EEEECCEEEEEEE T ss_conf 898227684999999889997999999815751438999999999986899998-----2898-9--9988998899998 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|.++.. . +|.. ..++ .... ......+...+..+.+ T Consensus 87 y~~~g~L~~-----~---------l~~~-~~~~--------e~~i------------~~i~~qil~al~ylH~------- 124 (267) T cd06646 87 YCGGGSLQD-----I---------YHVT-GPLS--------ELQI------------AYVCRETLQGLAYLHS------- 124 (267) T ss_pred ECCCCCHHH-----H---------HHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 148996999-----9---------9863-9999--------9999------------9999999999999998------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++++...-|+||+.|.. T Consensus 125 ~~ivHRDlKp~NILl~~~~~vKl~DFGla~~ 155 (267) T cd06646 125 KGKMHRDIKGANILLTDNGDVKLADFGVAAK 155 (267) T ss_pred CCCEEECCCCHHEEECCCCCEEEECCCCCEE T ss_conf 7987401670317997999999944868646 No 184 >cd06632 STKc_MEKK1_plant Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. ME Probab=97.42 E-value=0.0021 Score=41.61 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=70.1 Q ss_pred CCCCCEEEEEEEE-ECCCC-EEEEEECC----CCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 4668120017999-43995-89998216----6998---89999999999985326775551001026778752245155 Q gi|254780795|r 30 IIHGVENSNFVIQ-TSKGT-FILTIYEK----RMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 30 i~~G~~Ntny~v~-t~~~~-yiLri~e~----~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) |..|.--+.|+.. ..+|+ +.+|++.. .... .++..|+.+|..|+. |.+++-. | ...-++..+. T Consensus 8 iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~l~-~--~~~~~~~~~i 79 (258) T cd06632 8 LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQH-----PNIVQYL-G--TEREEDNLYI 79 (258) T ss_pred EECCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEE T ss_conf 511758199999988999899999985010221129999999999999986799-----8989399-9--9988999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+.. . +.+. ..+ ..... ......+...++.+.+ T Consensus 80 vmEy~~~G~L~~----~-------l~~~----~~l--------~~~~~------------~~~~~qi~~aL~ylH~---- 120 (258) T cd06632 80 FLELVPGGSLAK----L-------LKKY----GSF--------PEPVI------------RLYTRQILLGLEYLHD---- 120 (258) T ss_pred EEECCCCCCHHH----H-------HHHC----CCC--------CHHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 997869792999----9-------9874----999--------99999------------9999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 0777444022346422562796048731621356 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++.+...-+.||+.|.. T Consensus 121 ---~~iiHRDlKp~NiLi~~~~~iKl~DFGla~~ 151 (258) T cd06632 121 ---RNTVHRDIKGANILVDTNGVVKLADFGMAKQ 151 (258) T ss_pred ---CCCEEECCCHHHEEECCCCCEEECCCCCCEE T ss_conf ---8886500474664788999989853787167 No 185 >cd05622 STKc_ROCK1 STKc_ROCK1: Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the developme Probab=97.42 E-value=0.0035 Score=40.23 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=74.1 Q ss_pred CEEEEEECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 60531004668120017999439-9-5899982166--9988---99999999999853267755510010267787522 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316) +..-++-|..|.--+.|++.-.. | .|.+|+..+. .... .+..|.++|..+.. |.+++-. ...+-. T Consensus 44 DFeilk~IG~G~FG~V~la~~k~tg~~yAiKii~K~~~~~~~~~~~~~~E~~il~~l~h-----p~IVkl~---~~fqd~ 115 (371) T cd05622 44 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS-----PWVVQLF---YAFQDD 115 (371) T ss_pred HEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEE---EEEEEC T ss_conf 70672388307381999999999996999999888995347899999999999986799-----9999188---999879 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888 Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316) +..+.+++|++|..+. ..+ ++ .+++ ..... ....++...+..+. T Consensus 116 ~~lylVmEy~~GGdL~-----------~~l---~~--~~l~--------e~~a~------------~y~~qil~aL~yLH 159 (371) T cd05622 116 RYLYMVMEYMPGGDLV-----------NLM---SN--YDVP--------EKWAR------------FYTAEVVLALDAIH 159 (371) T ss_pred CEEEEEEECCCCCCHH-----------HHH---HC--CCCC--------HHHHH------------HHHHHHHHHHHHHH T ss_conf 9899999588897089-----------999---81--8989--------99999------------99999999999985 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 7652107774440223464225627-9604873162135 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) + +|+||.|+.|.|||++. +.+ -++||+.|. T Consensus 160 ~-------~gIiHRDLKPeNILld~~g~i-KL~DFGla~ 190 (371) T cd05622 160 S-------MGFIHRDVKPDNMLLDKSGHL-KLADFGTCM 190 (371) T ss_pred H-------CCEEECCCCCCCCCCCCCCCE-EEEECCCCE T ss_conf 2-------866868767011522689988-982686611 No 186 >cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active Probab=97.40 E-value=0.0026 Score=41.08 Aligned_cols=136 Identities=19% Similarity=0.272 Sum_probs=69.7 Q ss_pred EECCCCCEEEEEEEEE----CCC-CEEEEEECCCC---C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 0046681200179994----399-58999821669---9---88999999999998532677555100102677875224 Q gi|254780795|r 28 QPIIHGVENSNFVIQT----SKG-TFILTIYEKRM---N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t----~~~-~yiLri~e~~~---~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +.|..|.--+.|.++. ++| .|.+|++.+.. . .+.+-.+..+|..+..+ |.++.-.. ..+-.+ T Consensus 6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~~E~~~l~~l~~~----~~Iv~l~~---~~~~~~ 78 (288) T cd05583 6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRC----PFLVTLHY---AFQTDT 78 (288) T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECC T ss_conf 79414888399999985537879589999980788412267899999999999970599----97779999---999899 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) +.+.+++|++|..+.. .+-. ...++ ..... .....+...+..+.+ T Consensus 79 ~~yivmE~~~gg~L~~--------------~l~~-~~~l~--------e~~~~------------~~~~qil~~l~ylH~ 123 (288) T cd05583 79 KLHLILDYVNGGELFT--------------HLYQ-REHFT--------ESEVR------------VYIAEIVLALDHLHQ 123 (288) T ss_pred EEEEEEECCCCCCHHH--------------HHHH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH T ss_conf 9999997889988999--------------9987-59989--------99999------------999999999999998 Q ss_pred HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 652107774440223464225627-9604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +++. ++||+.|. T Consensus 124 -------~~ivHRDiKp~NILi~~~~~ik-l~DFG~a~ 153 (288) T cd05583 124 -------LGIIYRDIKLENILLDSEGHVV-LTDFGLSK 153 (288) T ss_pred -------CCEEECCCCHHHCCCCCCCCEE-EEECCCCE T ss_conf -------8903166771324345889989-98867573 No 187 >cd05581 STKc_PDK1 STKc_PDK1: Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential fo Probab=97.40 E-value=0.0039 Score=39.92 Aligned_cols=137 Identities=17% Similarity=0.212 Sum_probs=72.8 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-C-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 0046681200179994-399-5899982166-9-9---889999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-M-N---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|++.. .+| .|.+|++.+. . . ...+..|+++|..|.++ |.+++-. ....-.++.+. T Consensus 7 ~~iG~G~fg~V~~a~~~~tg~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~~H----p~Iv~l~---~~~~~~~~~yi 79 (279) T cd05581 7 KILGEGSFSTVYLAKEKETNKEYAIKVLDKRHLIKEKKVKYVKREKEVLTRLNGH----PGIVKLY---YTFQDEENLYF 79 (279) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC----CCCCEEE---EEEEECCEEEE T ss_conf 7973277909999998899989999998078905677899999999999842799----8978399---99998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. ..| +.. ..+ ..... ......+...++.+.+ T Consensus 80 vmE~~~gG~L~-----------~~l---~~~-~~l--------~e~~~------------~~~~~qi~~gL~~lH~---- 120 (279) T cd05581 80 VLEYAENGELL-----------EYI---KKF-GSF--------DEKCT------------RFYTAEILLALEYLHS---- 120 (279) T ss_pred EEECCCCCCHH-----------HHH---HHC-CCC--------CHHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 99488998789-----------999---876-998--------99999------------9999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-++||+-|. T Consensus 121 ---~~ivHRDiKpeNILl~~~g~~kl~DFG~a~ 150 (279) T cd05581 121 ---KGIIHRDLKPENILLDKDGHIKITDFGTAK 150 (279) T ss_pred ---CCCCCCCCCHHHEEECCCCCEEEECCCCCE T ss_conf ---886305474666799899988992276654 No 188 >cd05609 STKc_MAST STKc_MAST: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAS Probab=97.40 E-value=0.0037 Score=40.08 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=70.8 Q ss_pred EEECCCCCEEEEEEEEECC--CCEEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 1004668120017999439--95899982166--9988---999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK--GTFILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~--~~yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.-.+ ..|.+|+..+. .... .+-.+.++|..+. -|.+++-.+ ..+-.+..+ T Consensus 6 ~~~lG~G~fg~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~~~~~~~~y 77 (305) T cd05609 6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAE-----NPFVVSMFC---SFETRRHLC 77 (305) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEE T ss_conf 578631889299999998999899999980677034469999999999998578-----997811136---998699899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 78 lvmEy~~gg~L~-----------~~i~~~----~~l~--------~~~~~------------~~~~qi~~aL~ylH~--- 119 (305) T cd05609 78 MVMEYVEGGDCA-----------TLLKNI----GPLP--------VDMAR------------MYFAETVLALEYLHN--- 119 (305) T ss_pred EEEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999658998989-----------999864----9999--------99999------------999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||+++ +.+. ++||+.|. T Consensus 120 ----~~IiHRDlKPeNILl~~~g~iK-l~DFGlak 149 (305) T cd05609 120 ----YGIVHRDLKPDNLLITSMGHIK-LTDFGLSK 149 (305) T ss_pred ----CCCCCCCCCCCEEEECCCCCEE-EEECCCCC T ss_conf ----8961155761227988999889-98778773 No 189 >cd06625 STKc_MEKK3_like Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 a Probab=97.39 E-value=0.0061 Score=38.63 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=73.2 Q ss_pred HCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH------HHHHHHHHHHHHHHHCCCCCCCCCCCCHH Q ss_conf 48998605310046681200179994-399-5899982166-998------89999999999985326775551001026 Q gi|254780795|r 18 EYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE------KDLPVFIELLHYISRNKLPCPIPIPRNDG 88 (316) Q Consensus 18 ~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~------~~l~~~~~ll~~L~~~gipvP~pi~~~~G 88 (316) +|.+|++ |..|.--+.|++.. .+| .|.+|++... .+. ..+..|+.+|..|.. |.+++-.+ T Consensus 3 ~y~~~~~-----lG~G~fg~V~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~H-----p~Iv~~~~- 71 (263) T cd06625 3 NWRRGKL-----LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQH-----ERIVQYYG- 71 (263) T ss_pred CCEEEEE-----EECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE- T ss_conf 8888319-----721758399999988999799999981211776789999999999999986799-----89895999- Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 77875224515578647887076899899999999864367530687543323112456457667520015522788999 Q gi|254780795|r 89 KLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEID 168 (316) Q Consensus 89 ~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (316) ....++..+.+++|++|..+. ..+ .+. ..++ ..... .....+. T Consensus 72 --~~~~~~~~~ivmEy~~~g~L~-----------~~l---~~~-~~~~--------e~~~~------------~~~~Qi~ 114 (263) T cd06625 72 --CLRDDETLSIFMEYMPGGSVK-----------DQL---KAY-GALT--------ETVTR------------KYTRQIL 114 (263) T ss_pred --EEEECCEEEEEEECCCCCCHH-----------HHH---HHC-CCCC--------HHHHH------------HHHHHHH T ss_conf --999899999999776988789-----------999---883-9999--------99999------------9999999 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 99998887652107774440223464225627-9604873162135 Q gi|254780795|r 169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) ..+..+.+ +++||.|+.|.|||.+. +++. ++||+.|. T Consensus 115 ~al~ylH~-------~~IiHRDlKp~NiLl~~~g~vK-l~DFG~a~ 152 (263) T cd06625 115 EGVEYLHS-------NMIVHRDIKGANILRDSAGNVK-LGDFGASK 152 (263) T ss_pred HHHHHHHH-------CCEEEEECCHHHEEECCCCCEE-EEECCCCE T ss_conf 99999998-------9946720768986888999999-98378761 No 190 >cd05605 STKc_GRK4_like STKc_GRK4_like: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology ( Probab=97.39 E-value=0.0041 Score=39.74 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=71.5 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 0046681200179994-399-5899982166-9988----9999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +-|..|.--+.|++.. .+| .|.+|+.++. .... ..-.|+++|..|.. |.++.-. ...+-++..+. T Consensus 6 ~~lG~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----p~Iv~l~---~~~~~~~~~~l 77 (285) T cd05605 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKINS-----PFVVSLA---YAYETKDALCL 77 (285) T ss_pred EEECCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE---EEEEECCEEEE T ss_conf 996138082999999999998999999837882005789999999999987799-----9899398---99997998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) ++++++|..+. ..+...+ ..+++ .... ......+...+..+.+ T Consensus 78 vmE~~~gGdL~----~~i~~~~---------~~~l~--------e~~~------------~~~~~qil~al~ylH~---- 120 (285) T cd05605 78 VLTLMNGGDLK----FHIYNMG---------NPGFE--------EERA------------VFYAAEITCGLEHLHR---- 120 (285) T ss_pred EEEECCCCCHH----HHHHHHC---------CCCCC--------HHHH------------HHHHHHHHHHHHHHHH---- T ss_conf 99964798489----9999727---------89999--------9999------------9999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-+.||+.|. T Consensus 121 ---~~IiHRDlKPeNiLl~~~g~vKl~DFGla~ 150 (285) T cd05605 121 ---ERIVYRDLKPENILLDDYGHVRISDLGLAV 150 (285) T ss_pred ---CCEEECCCCCCCCCCCCCCCEEEEECCCEE T ss_conf ---892655257321012268948981457127 No 191 >cd05573 STKc_ROCK_NDR_like STKc_ROCK_NDR_like: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Probab=97.39 E-value=0.0057 Score=38.83 Aligned_cols=137 Identities=17% Similarity=0.216 Sum_probs=70.5 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-995-899982166--99889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.-. .|+ |.+|+..+. ....+ +..+.++|..+ ..|.+++-.. ..+-.+..+ T Consensus 6 ~~~lG~G~fg~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~iv~l~~---~f~~~~~~y 77 (354) T cd05573 6 IKVIGRGAFGEVWLVRKKDTGKVYAMKILRKSDMLKRNQVAHVRAERDILADA-----DSPWIVKLYY---SFQDEEYLY 77 (354) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEE T ss_conf 56863286839999998899989999998278813879999999999999867-----9999893999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+- ..++ ..... .....+...+..+. T Consensus 78 lvmEy~~ggdL~-----------~~l~~~----~~l~--------e~~~~------------~~~~qi~~al~~lH---- 118 (354) T cd05573 78 LVMEYMPGGDLM-----------TLLIKY----DVFP--------EETAR------------FYIAELVLAIDSVH---- 118 (354) T ss_pred EEEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHH---- T ss_conf 999688998888-----------999866----9999--------99999------------99999999999999---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+|+||.|+.|.|||++.+...-++||+.|. T Consensus 119 ---~~~iiHRDlKPeNILl~~~g~vKL~DFGlak 149 (354) T cd05573 119 ---KLGFIHRDIKPDNILIDADGHIKLADFGLCK 149 (354) T ss_pred ---HCCEEECCCCCCEEEECCCCCEEEEECCCCE T ss_conf ---7891751352565898899988980254630 No 192 >cd05585 STKc_YPK1_like STKc_YPK1_like: Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Probab=97.39 E-value=0.0054 Score=38.99 Aligned_cols=133 Identities=19% Similarity=0.256 Sum_probs=67.6 Q ss_pred CCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 6812001799943-99-5899982166--9988999---99999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|++.-. .| .|.+|+..+. ....++. .|..+|..+ ..|.+++-.. ..+-.+..+.+++| T Consensus 3 ~G~fG~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l-----~hp~Iv~l~~---~f~~~~~~ylvmEy 74 (312) T cd05585 3 KGSFGKVMQVRKKDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQV-----NCPFIVPLKF---SFQSPEKLYFVLAF 74 (312) T ss_pred CCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHC-----CCCCCCEEEE---EEEECCEEEEEEEC T ss_conf 680829899998899989999998378856989999999999999867-----9998894999---99989999999966 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+.. .|.+. ..+ ...... .....+...+..+.+ + T Consensus 75 ~~gG~L~~--------------~l~~~-~~l--------~e~~~~------------~~~~qil~aL~ylH~-------~ 112 (312) T cd05585 75 INGGELFH--------------HLQKE-GRF--------DLSRAR------------FYTAELLCALECLHK-------F 112 (312) T ss_pred CCCCCHHH--------------HHHHC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH-------C T ss_conf 79988899--------------99875-999--------999999------------999999999999998-------8 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 444022346422562796048731621356 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) ++||.|+.|.|||++.+...-++||+.|.. T Consensus 113 ~IiHRDLKPeNILl~~~g~iKL~DFGla~~ 142 (312) T cd05585 113 NVIYRDLKPENILLDYQGHIALCDFGLCKL 142 (312) T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCHHHC T ss_conf 950576763223225889787501222110 No 193 >cd05072 PTKc_Lyn Catalytic Domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa Probab=97.38 E-value=0.0092 Score=37.49 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=77.6 Q ss_pred EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 05310046681200179994399-5899982166-998899999999999853267755510010267787522451557 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.-.+.|..|.--+.|+....++ +..+|+.+.. .+.+.+..|+++|..|+...| ++-. | ...-.+..+.+ T Consensus 8 ~~~~~~IG~G~fg~Vy~~~~~~~~~VAvK~~~~~~~~~~~f~~E~~~l~~l~HpnI-----V~~~-g--~~~~~~~~~lv 79 (261) T cd05072 8 IKMVKKLGAGQFGEVWMGFYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKL-----VRLY-A--VVTKEEPIYII 79 (261) T ss_pred EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEEECCEEEEE T ss_conf 79723983288869999999999999999986675579999999999986899888-----7299-9--99889988999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. .| +. .+ ....... ..+ .....+...+..+.+ T Consensus 80 ~E~~~~GsL~~-----------~l---~~-~~------~~~~~~~---~~~---------~~~~qia~gL~yLH~----- 121 (261) T cd05072 80 TEYMAKGSLLD-----------FL---KS-DE------GSKVQLP---KLI---------DFSAQIAEGMAYIEK----- 121 (261) T ss_pred EEECCCCCHHH-----------HH---HH-CC------CCCCCHH---HHH---------HHHHHHHHHHHHHHH----- T ss_conf 98079993899-----------98---53-66------8887999---999---------999999999999986----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++.+...-|.||+.|. T Consensus 122 --~~iiHrDlK~~NiLl~~~~~~Kl~DFGls~ 151 (261) T cd05072 122 --KNYIHRDLRAANVLVSESLMCKIADFGLAR 151 (261) T ss_pred --CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf --892666146374898899979998558756 No 194 >cd07849 STKc_ERK1_2_like The catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK ki Probab=97.38 E-value=0.0036 Score=40.13 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=69.4 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCC Q ss_conf 5310046681200179994-3995-899982166998---8999999999998532677-55510010267787522451 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~ 98 (316) .-++-|..|.--+.|+..- .+|+ +.+|........ ...-.|+.+|..|...++- .=..+...+ + ...+.. T Consensus 8 ~i~~~iG~G~fg~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~rEi~il~~l~H~nIv~l~~v~~~~~---~-~~~~~~ 83 (336) T cd07849 8 QNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPS---F-ESFNDV 83 (336) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC---C-CCCCEE T ss_conf 881797325086999999889998999999841448189999999999998768999474788995377---3-557668 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.++++++|.- ..+ + . ...++ .... ......+...+..+.+ T Consensus 84 yiv~E~~~~~L---------~~~---~---~--~~~l~--------~~~i------------~~~~~qil~aL~~lH~-- 124 (336) T cd07849 84 YIVQELMETDL---------YKL---I---K--TQHLS--------NDHI------------QYFLYQILRGLKYIHS-- 124 (336) T ss_pred EEEEECCCCCH---------HHH---H---H--CCCCC--------HHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 99983278767---------999---8---6--28999--------9999------------9999999999999987-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-++||+.|. T Consensus 125 -----~~IiHRDiKPeNILl~~~~~vKL~DFGla~ 154 (336) T cd07849 125 -----ANVLHRDLKPSNLLLNTNCDLKICDFGLAR 154 (336) T ss_pred -----CCCEECCCCHHHEEECCCCCEEECCCCCCE T ss_conf -----887535675687798799988842445221 No 195 >cd06634 STKc_TAO2 Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4 Probab=97.37 E-value=0.0063 Score=38.56 Aligned_cols=139 Identities=15% Similarity=0.257 Sum_probs=74.3 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC--CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 5310046681200179994-3995-899982166--9988---9999999999985326775551001026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR--MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~--~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k 97 (316) ..++.|..|.--+.|++.- .+|+ +.+|+.... ...+ .+..|+.+|..|.. |.+++-.+ ...-.+. T Consensus 18 ~~l~~IG~G~fG~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~H-----pnIV~~~~---~~~~~~~ 89 (308) T cd06634 18 SDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH-----PNTIQYRG---CYLREHT 89 (308) T ss_pred EEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCE T ss_conf 420797138881999999889995999999864542476999999999999997789-----99846987---8832886 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.+++|++|... ..+ +.|. ..++ ..... .....+...+..+.+ T Consensus 90 ~~lVmEy~~G~~~------------~ll-~~~~--~~l~--------e~~~~------------~i~~qil~gL~yLH~- 133 (308) T cd06634 90 AWLVMEYCLGSAS------------DLL-EVHK--KPLQ--------EVEIA------------AVTHGALQGLAYLHS- 133 (308) T ss_pred EEEEEEECCCCHH------------HHH-HHHC--CCCC--------HHHHH------------HHHHHHHHHHHHHHH- T ss_conf 7999992489748------------899-9705--8999--------99999------------999999999999998- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 521077744402234642256279604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|+|||++++...-|.||+.|. T Consensus 134 ------~~IIHRDLKP~NILl~~~g~vKl~DFG~A~ 163 (308) T cd06634 134 ------HNMIHRDVKAGNILLSEPGLVKLGDFGSAS 163 (308) T ss_pred ------CCCCCCCCCCCCEEECCCCCEEEEECCCCE T ss_conf ------886346676220799899989998456763 No 196 >cd05627 STKc_NDR2 STKc_NDR2: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite Probab=97.37 E-value=0.013 Score=36.44 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=70.0 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166--99889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++... .| .|.+|+..+. ...+. +..+.++|..+. .|.+++..+ ...-.+..+ T Consensus 6 lk~lG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~y 77 (360) T cd05627 6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEAD-----GAWVVKMFY---SFQDKRNLY 77 (360) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEE T ss_conf 468012888299999988999899999980688458999999999999998789-----998774999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+ .+. ..+ ...... .....+...+..+. T Consensus 78 lvmEy~~gGdL~-----------~~l---~~~-~~l--------~e~~~~------------~~~~qi~~aL~~lH---- 118 (360) T cd05627 78 LIMEFLPGGDMM-----------TLL---MKK-DTL--------SEEATQ------------FYIAETVLAIDAIH---- 118 (360) T ss_pred EEEECCCCCCHH-----------HHH---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH---- T ss_conf 999588997089-----------997---616-998--------999999------------99999999999998---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+|+||.|+.|.|||++.+...-++||+.|. T Consensus 119 ---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~ 149 (360) T cd05627 119 ---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCT 149 (360) T ss_pred ---HCCEEECCCCCCEEEECCCCCEEECCCCCCC T ss_conf ---5768861266662788799988984267652 No 197 >cd06623 PKc_MAPKK_plant_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania m Probab=97.37 E-value=0.011 Score=37.01 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=74.5 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 100466812001799943-99-5899982166998---899999999999853267755510010267787522451557 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) ++.|..|.--+.|+.... +| .|.+|+....... ..+..|+++|..|...+| ++-.. ...-.+..+.+ T Consensus 6 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~HpnI-----V~~~~---~~~~~~~~~lv 77 (264) T cd06623 6 VKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYV-----VKCYG---AFYKEGEISIV 77 (264) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEEE---EEEECCEEEEE T ss_conf 58983178939999999899989999998214697899999999999986799988-----82999---99889999999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|..+.. .+ .. . ..+...... .....+...+..+.+ T Consensus 78 mEy~~~G~L~~-----------~i---~~---~------~~~~e~~~~------------~~~~qi~~gl~yLH~----- 117 (264) T cd06623 78 LEYMDGGSLAD-----------LL---KK---V------GKIPEPVLA------------YIARQILKGLDYLHT----- 117 (264) T ss_pred EECCCCCCHHH-----------HH---HH---C------CCCCHHHHH------------HHHHHHHHHHHHHHH----- T ss_conf 97899984999-----------99---73---4------898999999------------999999999999987----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 777444022346422562796048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .+++||.|+.|.|||++.+...-+.||+.|.. T Consensus 118 -~~~IiHRDlKp~NILl~~~~~iKl~DFG~a~~ 149 (264) T cd06623 118 -KRHIIHRDIKPSNLLINSKGEVKIADFGISKV 149 (264) T ss_pred -CCCEECCCCCHHHEEECCCCCEEEECCCCCEE T ss_conf -08988044788996988999999921878858 No 198 >cd05593 STKc_PKB_gamma STKc_PKB_gamma: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent Probab=97.37 E-value=0.0046 Score=39.44 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=67.5 Q ss_pred CCCEEEEEEEEEC-CCC-EEEEEECCC--CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 6812001799943-995-899982166--998899---999999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQTS-KGT-FILTIYEKR--MNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t~-~~~-yiLri~e~~--~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|++.-. +|+ |.+|+..+. ...+++ -.|.++|..+. -|.+++-. ....-.++.+.+++| T Consensus 5 ~G~fG~V~l~~~k~tg~~~AiKii~k~~~~~~~~~~~~~~E~~iL~~l~-----Hp~Iv~l~---~~f~~~~~lylVmEy 76 (325) T cd05593 5 KGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTR-----HPFLTSLK---YSFQTKDRLCFVMEY 76 (325) T ss_pred ECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEE---EEEEECCEEEEEEEC T ss_conf 0708599999988999899999982688548799999999999998689-----99887699---999989999999985 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+. ..+ .+. ..+ ...... .....+...+..+.+ + T Consensus 77 ~~gG~L~-----------~~l---~~~-~~l--------~e~~~~------------~~~~qil~aL~yLH~-------~ 114 (325) T cd05593 77 VNGGELF-----------FHL---SRE-RVF--------SEDRTR------------FYGAEIVSALDYLHS-------G 114 (325) T ss_pred CCCCCHH-----------HHH---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH-------C T ss_conf 5999899-----------998---635-899--------999999------------999999999999975-------9 Q ss_pred CEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 4440223464225627-96048731621356 Q gi|254780795|r 185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) ++||.|+.|.|||++. +.+. ++||+.|.. T Consensus 115 ~IiHRDLKPeNILld~~g~iK-L~DFGlak~ 144 (325) T cd05593 115 KIVYRDLKLENLMLDKDGHIK-ITDFGLCKE 144 (325) T ss_pred CEEECCCCCCCCCCCCCCCEE-ECCCCHHHH T ss_conf 888511575456636789785-322023342 No 199 >cd05085 PTKc_Fer Catalytic Domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c Probab=97.36 E-value=0.0094 Score=37.44 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=68.0 Q ss_pred CCCEEEEEEEEECCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC Q ss_conf 681200179994399-589998216699889---9999999999853267755510010267787522451557864788 Q gi|254780795|r 32 HGVENSNFVIQTSKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG 107 (316) Q Consensus 32 ~G~~Ntny~v~t~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G 107 (316) .|.--+.|+....++ ...+|++.+....+. .-.|+.+|..|. -|.+++-. | +....+..+.+++|.+| T Consensus 5 ~G~fg~Vy~g~~~~~~~VAvK~~~~~~~~~~~~~f~~E~~il~~l~-----HpnIv~l~-g--~~~~~~~~~iv~Ey~~~ 76 (250) T cd05085 5 KGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYD-----HPNIVKLI-G--VCTQRQPIYIVMELVPG 76 (250) T ss_pred ECCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEEEEEECCCC T ss_conf 0899389999988999999999894378689999999999998679-----99983199-9--99889989999975899 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 70768998999999998643675306875433231124564576675200155227889999999888765210777444 Q gi|254780795|r 108 SPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGII 187 (316) Q Consensus 108 ~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~I 187 (316) ..+.. -|+.. ...+. +... -.....+...+..+.+ +++| T Consensus 77 g~L~~--------------~l~~~--------~~~l~---~~~~---------~~~~~~ia~gl~yLH~-------~~ii 115 (250) T cd05085 77 GDFLS--------------FLRKK--------KDELK---TKQL---------VKFALDAAAGMAYLES-------KNCI 115 (250) T ss_pred CCHHH--------------HHHHC--------CCCCC---HHHH---------HHHHHHHHHHHHHHHH-------CCCC T ss_conf 82899--------------99746--------89999---9999---------9999999999999842-------9964 Q ss_pred ECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 02234642256279604873162135 Q gi|254780795|r 188 HADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 188 HgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) |+|+.+.|||++++...-|.||+.+. T Consensus 116 HrDlK~~NiLv~~~~~~Kl~DFGls~ 141 (250) T cd05085 116 HRDLAARNCLVGENNVLKISDFGMSR 141 (250) T ss_pred CCCCCCCCEEECCCCCEEEEECCCCE T ss_conf 47537463668899968999667788 No 200 >cd06631 STKc_YSK4 Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Probab=97.35 E-value=0.0032 Score=40.45 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=67.3 Q ss_pred CCCEEEEEEEEECCCC-EEEEEECCC-C----CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 6812001799943995-899982166-9----98---8999999999998532677555100102677875224515578 Q gi|254780795|r 32 HGVENSNFVIQTSKGT-FILTIYEKR-M----NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 32 ~G~~Ntny~v~t~~~~-yiLri~e~~-~----~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) .|.--+.|.-...+|+ +.+|..... . .. +.+..|+.+|..|.. |.+++--+ . ..-++..+.++ T Consensus 10 ~G~fg~V~~~~~~~g~~vAiK~v~~~~~~~~~~~~~~~~~~~Ei~il~~l~H-----pniv~~~~-~--~~~~~~~~ivm 81 (265) T cd06631 10 KGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKH-----VNIVQYLG-T--CLDDNTISIFM 81 (265) T ss_pred CCCCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEEE-E--EEECCEEEEEE T ss_conf 1789199999958999999999981553214559999999999999986899-----99726999-9--98899899999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+ ++. ..++ .... ......+...+..+.+ T Consensus 82 Ey~~gg~L~-----------~~l---~~~-~~~~--------e~~~------------~~~~~qi~~gl~yLH~------ 120 (265) T cd06631 82 EFVPGGSIS-----------SIL---NRF-GPLP--------EPVF------------CKYTKQILDGVAYLHN------ 120 (265) T ss_pred ECCCCCCHH-----------HHH---HHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------ T ss_conf 915989489-----------999---864-9999--------9999------------9999999999999998------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 121 -~giiHRDlKp~NiLl~~~~~vKl~DFG~ak 150 (265) T cd06631 121 -NCVVHRDIKGNNVMLMPNGIIKLIDFGCAR 150 (265) T ss_pred -CCCCCCCCCHHHEEECCCCCEEEECCCCCC T ss_conf -888313278899238899989990375761 No 201 >cd06618 PKc_MKK7 Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and Probab=97.34 E-value=0.014 Score=36.25 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=71.3 Q ss_pred CCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 98605310046681200179994-3995-89998216699889---9999999999853267755510010267787522 Q gi|254780795|r 21 IGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 21 lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316) +++..-++.|..|.--+.|++.- ..|+ +.+|+..+....++ +..++..|..+ ...|.+++-.+ ...-+ T Consensus 14 l~dy~il~~IG~G~fG~Vy~a~~~~t~~~vAvK~i~~~~~~~~~~~~~~e~~~l~~~----~~hpnIv~l~~---~~~~~ 86 (296) T cd06618 14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKS----HDCPYIVKCYG---YFITD 86 (296) T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEEE---EEEEC T ss_conf 674399889820889299999999999799999985024907999999999999985----79995656999---99989 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888 Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316) +..+.++++.+|. ++..+-+.+ ..++ .. ... .....+...+..+. T Consensus 87 ~~~~ivmE~~~~~------------l~~l~~~~~---~~~~--------e~----~~~--------~~~~qi~~al~ylH 131 (296) T cd06618 87 SDVFICMELMSTC------------LDKLLKRIQ---GPIP--------ED----ILG--------KMTVAIVKALHYLK 131 (296) T ss_pred CEEEEEEEECCCC------------HHHHHHHHC---CCCC--------HH----HHH--------HHHHHHHHHHHHHH T ss_conf 9999999949987------------799999726---9999--------99----999--------99999999999998 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 76521077744402234642256279604873162135 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) . ..|+||.|+.|.|||++++...-|+||+.|. T Consensus 132 ~------~~~IiHRDIKP~NILi~~~g~iKi~DFGla~ 163 (296) T cd06618 132 E------KHGVIHRDVKPSNILLDASGNVKLCDFGISG 163 (296) T ss_pred H------HCCEEECCCCCCCEEECCCCCEEEEECCCEE T ss_conf 7------3798733246663578699988995458404 No 202 >cd05570 STKc_PKC STKc_PKC: Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide Probab=97.34 E-value=0.0082 Score=37.83 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=68.3 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 466812001799943-99-5899982166--998899---9999999998532677555100102677875224515578 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) |..|.--+.|++.-. +| .|.+|+..+. ....++ ..+.++|..+.++ |.+++-.+ ..+-.++.+.++ T Consensus 3 IG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~h----p~Iv~l~~---~f~~~~~lylVm 75 (318) T cd05570 3 LGKGSFGKVLLAELKGTDELYAIKVLKKDVVLQDDDVECTMTEKRVLALAGKH----PFLTQLHS---CFQTKDRLFFVM 75 (318) T ss_pred EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEEE---EEEECCEEEEEE T ss_conf 64288919999999999989999998278853867899999999999860189----97767999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+.+. ..+ ...... .....+...+..+. T Consensus 76 Ey~~gGdL~--------------~~l~~~-~~l--------~e~~a~------------~~~~qi~~aL~yLH------- 113 (318) T cd05570 76 EYVNGGDLM--------------YHIQQQ-GRF--------PEPRAR------------FYAAEIVLGLQFLH------- 113 (318) T ss_pred ECCCCCCHH--------------HHHHHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH------- T ss_conf 668998789--------------987545-899--------999999------------99999999999997------- Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+++||.|+.|.|||++.+...-++||+.|. T Consensus 114 ~~~IiHRDLKPeNILl~~~g~iKL~DFGlak 144 (318) T cd05570 114 ERGIIYRDLKLDNVLLDAEGHIKIADFGMCK 144 (318) T ss_pred HCCEEECCCCCCCCEECCCCCEEECCCCHHH T ss_conf 4977867567654216578978860340334 No 203 >PRK13184 pknD serine/threonine-protein kinase; Reviewed Probab=97.33 E-value=0.0043 Score=39.61 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=69.8 Q ss_pred EECCCCCEEEEEEEEEC-CC-CEEEEEECCCCCHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 00466812001799943-99-58999821669988-----9999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKRMNEK-----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~~~~-----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|---+.|+..-. .| +..+|+.......+ ....|..++..|. =|.+++--+ +...++.++. T Consensus 8 r~LGrGGMG~VYlArD~~LgR~VALKvLr~~ls~d~~~reRFlREAriaArL~-----HPNIV~VYD---~gedg~~~Yi 79 (933) T PRK13184 8 RLIGKGGMGEVYLAYDPVCSRKVALKRIREDLSDNPLLKKRFLREAKIAADLI-----HPGVVPVYT---ICSDGDPVYY 79 (933) T ss_pred EEEEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEE T ss_conf 79852788789999988999748999829366679899999999999998589-----939892988---6878995389 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +|+|++|.++. +.|..+.+. ...+........+.... .+...+...++... T Consensus 80 VMEyVeG~TL~-----------~LLr~l~qk-~~Lp~elae~~sv~~lL------------~If~QIc~ALayAH----- 130 (933) T PRK13184 80 TMPYIEGYTLK-----------SLLKSVWQK-ESLSKELAEKTSVGAFL------------SIFHKICATVEYVH----- 130 (933) T ss_pred EEECCCCCCHH-----------HHHHHHCCC-CCCCHHHHHCCCHHHHH------------HHHHHHHHHHHHHH----- T ss_conf 98158998789-----------999762114-78863442102288999------------99999999999999----- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCC Q ss_conf 07774440223464225627-960487316213 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316) .+|+||.|+.|+||++.. +++. |+||+-| T Consensus 131 --s~GIVHRDLKPaNILLg~~GeVK-LlDFGLA 160 (933) T PRK13184 131 --SRGILHRDLKPDNILLGLFSEVV-ILDWGAA 160 (933) T ss_pred --HCCCCCCCCCHHHEEECCCCCEE-ECCCCCC T ss_conf --78683588977997888999889-9127654 No 204 >cd05633 STKc_GRK3 STKc_GRK3: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory recept Probab=97.32 E-value=0.0042 Score=39.67 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=64.8 Q ss_pred CCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHH---HH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 681200179994-399-5899982166-99889---99-99999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQT-SKG-TFILTIYEKR-MNEKD---LP-VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~---l~-~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|.+.. ++| .|.+|+..+. ....+ +. .+..++..++. ..+|.++.-.. ...-.++.+.+++| T Consensus 4 ~G~fG~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~e~~~~~~~~~--~~~p~iv~~~~---~~~~~~~~~lvmE~ 78 (279) T cd05633 4 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST--GDCPFIVCMTY---AFHTPDKLCFILDL 78 (279) T ss_pred CCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEE---EEEECCEEEEEEEC T ss_conf 08370999999889998999999847880146778999999999999852--79997878999---99989999999984 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+. ..+.+ .+ ......... ....+...+..+.+ + T Consensus 79 ~~gg~L~-----------~~l~~-----~~-------~l~e~~~~~------------~~~qil~aL~ylH~-------~ 116 (279) T cd05633 79 MNGGDLH-----------YHLSQ-----HG-------VFSEKEMRF------------YATEIILGLEHMHN-------R 116 (279) T ss_pred CCCCCHH-----------HHHHH-----CC-------CCCHHHHHH------------HHHHHHHHHHHHHH-------C T ss_conf 5998699-----------99987-----59-------999999999------------99999999999987-------8 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) |+||.|+.|.|||++.+...-++||+.|+ T Consensus 117 ~IiHRDlKP~NILl~~~g~~Kl~DFGla~ 145 (279) T cd05633 117 FVVYRDLKPANILLDEHGHVRISDLGLAC 145 (279) T ss_pred CCEECCCCCCCCCCCCCCCEEECCCCEEE T ss_conf 98741047333240368976965010556 No 205 >cd07854 STKc_MAPK4_6 The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell c Probab=97.32 E-value=0.0046 Score=39.47 Aligned_cols=147 Identities=12% Similarity=0.162 Sum_probs=70.5 Q ss_pred CEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCC-CCCCCCCCCHH---HHHHHH Q ss_conf 605310046681200179994-399-58999821669--98899999999999853267-75551001026---778752 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKL-PCPIPIPRNDG---KLYGFL 94 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gi-pvP~pi~~~~G---~~~~~~ 94 (316) +..-++.|..|.--+.|...- ..| .+.+|...... ....+-.|+.+|..|...++ .+-..+.+.+. ..+... T Consensus 6 RY~il~~LG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~rEi~il~~l~H~nIv~~~~~~~~~~~~~~~~~~~~ 85 (342) T cd07854 6 RYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSL 85 (342) T ss_pred CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC T ss_conf 55883894217480999999889998999999973898889999999999986799898909999802786531111322 Q ss_pred --CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf --245155786478870768998999999998643675306875433231124564576675200155227889999999 Q gi|254780795|r 95 --CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316) Q Consensus 95 --~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316) .+..+.+++|++|. .. . .+ +. ........ ......+...+. T Consensus 86 ~~~~~~~iv~e~~~~~------L~---~---~~-------~~------~~l~e~~i------------~~~~~Qil~aL~ 128 (342) T cd07854 86 TELNSVYIVQEYMETD------LA---N---VL-------EQ------GPLSEEHA------------RLFMYQLLRGLK 128 (342) T ss_pred CCCCEEEEEEECCCCC------HH---H---HH-------HC------CCCCHHHH------------HHHHHHHHHHHH T ss_conf 2354489998077868------99---9---99-------72------99899999------------999999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 8887652107774440223464225627-9604873162135 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .+.+ .|+||.|+.|.|||++. +.+.-++||+.|. T Consensus 129 ylH~-------~~IiHRDiKPeNILl~~~~~~vKl~DFGla~ 163 (342) T cd07854 129 YIHS-------ANVLHRDLKPANVFINTEDLVLKIGDFGLAR 163 (342) T ss_pred HHHH-------CCCEECCCCHHHEEEECCCCEEEECCCCEEE T ss_conf 9988-------8665264757885883799848752450136 No 206 >cd07850 STKc_JNK The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different Probab=97.32 E-value=0.0059 Score=38.75 Aligned_cols=143 Identities=15% Similarity=0.261 Sum_probs=71.9 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCC-C---HHHHHHHHHHHHHHHHCCCCCCCCCCCCH- Q ss_conf 99848998605310046681200179994-399-58999821669-9---88999999999998532677555100102- Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRM-N---EKDLPVFIELLHYISRNKLPCPIPIPRND- 87 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~-~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~- 87 (316) ++++|.+ ++.|..|.--+.|+..- ..| .+.+|+..+.. + ...+-.|+.+|..|...+| ++-.+ T Consensus 14 v~~rY~i-----~~~lG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~HpnI-----v~l~~~ 83 (353) T cd07850 14 VLKRYQN-----LKPIGSGAQGIVCAAYDTVTKQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNI-----IGLLNA 83 (353) T ss_pred CCCCCEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CCEEEE T ss_conf 3026288-----369731408499999988999899999988345382889999999999986799699-----938889 Q ss_pred ---HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH Q ss_conf ---67787522451557864788707689989999999986436753068754332311245645766752001552278 Q gi|254780795|r 88 ---GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLK 164 (316) Q Consensus 88 ---G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (316) ...+. -.+..+.++++++|.- + + .+ + ..++ ..... ... T Consensus 84 f~~~~~~~-~~~~~yivmE~~~~~L--------~-~---~~---~---~~l~--------~~~~~------------~i~ 124 (353) T cd07850 84 FTPQKSLE-EFQDVYLVMELMDANL--------C-Q---VI---Q---MDLD--------HERMS------------YLL 124 (353) T ss_pred EECCCCCC-CCCEEEEEEECCCCCH--------H-H---HH---H---CCCC--------HHHHH------------HHH T ss_conf 84066433-2763899994179989--------9-9---98---6---0399--------99999------------999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 8999999988876521077744402234642256279604873162135 Q gi|254780795|r 165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+...+..+.+ .|+||.|+.|.|||++.+...-++||+.|. T Consensus 125 ~Qil~aL~ylH~-------~gIiHRDLKPeNILl~~~~~vKL~DFGlA~ 166 (353) T cd07850 125 YQMLCGIKHLHS-------AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 166 (353) T ss_pred HHHHHHHHHHHH-------CCCEECCCCHHHEEECCCCCEEECCCCHHE T ss_conf 999999999987-------893556687577799899978622312200 No 207 >cd05595 STKc_PKB_beta STKc_PKB_beta: Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insuli Probab=97.31 E-value=0.0079 Score=37.93 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=69.3 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-5899982166--9988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... .| .|.+|+..+. ...+++. .|..+|..+. -|.+++-.. ...-.++.+.+++ T Consensus 4 G~G~fG~V~~~~~k~tg~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~l~-----Hp~Iv~l~~---~f~~~~~lylVmE 75 (323) T cd05595 4 GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-----HPFLTALKY---AFQTHDRLCFVME 75 (323) T ss_pred EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEEEEE T ss_conf 22728499999988999899999980688559899999999999998679-----998885999---9998999999996 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+ . ..++ ..... .....+...+..+.+ T Consensus 76 y~~gGdL~-----------~~l~~---~-~~~~--------e~~a~------------~~~~qi~~aL~yLH~------- 113 (323) T cd05595 76 YANGGELF-----------FHLSR---E-RVFT--------EERAR------------FYGAEIVSALEYLHS------- 113 (323) T ss_pred CCCCCCHH-----------HHHHH---C-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 56998489-----------99986---5-9999--------99999------------999999999999987------- Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 74440223464225627-96048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++. +.+. ++||+.|.. T Consensus 114 ~~IiHRDLKPeNILl~~~g~iK-L~DFGlak~ 144 (323) T cd05595 114 RDVVYRDIKLENLMLDKDGHIK-ITDFGLCKE 144 (323) T ss_pred CCEECCCCCHHHCCCCCCCCEE-ECCCCCCEE T ss_conf 7902365471222303689665-223240022 No 208 >cd05608 STKc_GRK1 STKc_GRK1: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod Probab=97.31 E-value=0.0081 Score=37.85 Aligned_cols=135 Identities=15% Similarity=0.126 Sum_probs=66.9 Q ss_pred CCEEEEEEEEEC-CC-CEEEEEECCCC--CH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 812001799943-99-58999821669--98---8999999999998532677555100102677875224515578647 Q gi|254780795|r 33 GVENSNFVIQTS-KG-TFILTIYEKRM--NE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316) Q Consensus 33 G~~Ntny~v~t~-~~-~yiLri~e~~~--~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316) |.--+.|++... +| .|.+|+..+.. .. +.+..|.++|..|....+ ++-. ...+-++..+.+++|+ T Consensus 4 G~fg~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~---~~~~~~~~~~lvmE~~ 75 (280) T cd05608 4 GGFGEVSACQMRATGKMYACKKLNKKRLKKRKGYEGAMVEKRILARVHSRFI-----VSLA---YAFQTKTDLCLVMTLM 75 (280) T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEEEEEECC T ss_conf 8574999999999997999999807882256899999999999986699878-----8599---9998799789999726 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 88707689989999999986436753068754332311245645766752001552278899999998887652107774 Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316) Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316) +|..+.. .+ +...+. ......... ......+...+..+.+ ++ T Consensus 76 ~gG~L~~----~i----------~~~~~~-----~~~~~e~~~------------~~~~~qi~~aL~ylH~-------~~ 117 (280) T cd05608 76 NGGDLRY----HI----------YNVDEE-----NPGFPEPRA------------CFYTAQIILGLEHLHQ-------HR 117 (280) T ss_pred CCCCHHH----HH----------HHHHHC-----CCCCCHHHH------------HHHHHHHHHHHHHHHH-------CC T ss_conf 8991899----99----------875541-----799899999------------9999999999999987-------89 Q ss_pred EEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 4402234642256279604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +||.|+.|.|||++++...-|.||+.|. T Consensus 118 IiHRDlKPeNILl~~~g~vKl~DFGla~ 145 (280) T cd05608 118 IVYRDLKPENVLLDNDGNVRISDLGLAV 145 (280) T ss_pred CEEEECCCCCEEECCCCCEEEECCCCCE T ss_conf 2680147321214699988984046426 No 209 >KOG0578 consensus Probab=97.31 E-value=0.0048 Score=39.30 Aligned_cols=153 Identities=19% Similarity=0.269 Sum_probs=77.4 Q ss_pred CCHHHHHHHHHHC-C----CCCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHHH-HHHHHHHHHHHHHCCC Q ss_conf 8999999999848-9----986053100466812001799943-99-5899982166-99889-9999999999853267 Q gi|254780795|r 7 PPQKEIQSFVQEY-A----IGQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEKD-LPVFIELLHYISRNKL 77 (316) Q Consensus 7 ls~~el~~il~~y-~----lg~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~~-l~~~~~ll~~L~~~gi 77 (316) ++.+++...+..- . ......++.|..|..-..|.-.-. .+ .-..|.+..+ ....+ |=.|+.+|.-+ T Consensus 253 ~~~~~~~~~l~~v~~~~dP~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~----- 327 (550) T KOG0578 253 VSKEEILAKLKRVVSQGDPRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDL----- 327 (550) T ss_pred CHHHHHHHHHHEECCCCCHHHHHCCHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHC----- T ss_conf 208899987531215788224320123325666665565666267745778998721487122357799998746----- Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 75551001026778752245155786478870768998999999998643675306875433231124564576675200 Q gi|254780795|r 78 PCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD 157 (316) Q Consensus 78 pvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~ 157 (316) ..|.++.-.+ .+ .+++..|++|+|++|..+...-...+ T Consensus 328 ~H~NiVnfl~-Sy--lv~deLWVVMEym~ggsLTDvVt~~~--------------------------------------- 365 (550) T KOG0578 328 HHPNIVNFLD-SY--LVGDELWVVMEYMEGGSLTDVVTKTR--------------------------------------- 365 (550) T ss_pred CCHHHHHHHH-HH--CCCCCEEEEEECCCCCCCCHHHHCCC--------------------------------------- T ss_conf 6538988777-76--03560178762027774000110121--------------------------------------- Q ss_pred CCCHHHHHH----HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCC Q ss_conf 155227889----9999998887652107774440223464225627-960487316213568 Q gi|254780795|r 158 KVDEDLKKE----IDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCND 215 (316) Q Consensus 158 ~~~~~~~~~----l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~ 215 (316) +++...+. +...+.++. -+|+||-|+..||||... +.+. +.||+||..- T Consensus 366 -~~E~qIA~Icre~l~aL~fLH-------~~gIiHrDIKSDnILL~~~g~vK-ltDFGFcaqi 419 (550) T KOG0578 366 -MTEGQIAAICREILQGLKFLH-------ARGIIHRDIKSDNILLTMDGSVK-LTDFGFCAQI 419 (550) T ss_pred -CCHHHHHHHHHHHHHHHHHHH-------HCCEEEECCCCCEEEECCCCCEE-EEEEEEEECC T ss_conf -557899999999999999987-------45604403552127852688578-7521133115 No 210 >cd05114 PTKc_Tec_Rlk Catalytic Domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h Probab=97.31 E-value=0.0049 Score=39.24 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=76.3 Q ss_pred EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 05310046681200179994399-5899982166-998899999999999853267755510010267787522451557 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.-.+.|..|.--+.|+.+...+ +..+|..... .+.+++-.|+++|..|...+ +++-. | +....+..+.+ T Consensus 6 ~~~~~~iG~G~fG~V~~g~~~~~~~VAiK~l~~~~~~~~~~~~E~~il~~l~Hpn-----IV~~~-g--~~~~~~~~~iv 77 (256) T cd05114 6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPK-----LVQLY-G--VCTQQKPLYIV 77 (256) T ss_pred EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-----CCEEE-E--EEEECCEEEEE T ss_conf 7986897138897899999889989999998657798899999999998689989-----86099-9--99889989999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. .| .. +...... ... -.+...+...+..+.+ T Consensus 78 ~Ey~~~GsL~~-----------~l---~~--------~~~~l~~---~~~---------~~i~~~ia~gl~yLH~----- 118 (256) T cd05114 78 TEFMENGCLLN-----------YL---RQ--------RQGKLSK---DML---------LSMCQDVCEGMEYLER----- 118 (256) T ss_pred EECCCCCCHHH-----------HH---HH--------CCCCCCH---HHH---------HHHHHHHHHHHHHHHH----- T ss_conf 98389995899-----------99---76--------3799999---999---------9999999999999987----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++.+...-+.||+.|. T Consensus 119 --~~ivHrDlK~~NiLl~~~~~vKl~DFGla~ 148 (256) T cd05114 119 --NSFIHRDLAARNCLVSSTGVVKVSDFGMTR 148 (256) T ss_pred --CCEECCCCCCCEEEECCCCCEEEECCCCCC T ss_conf --991367688300889899978994387650 No 211 >cd07878 STKc_p38beta_MAPK11 The catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, Probab=97.31 E-value=0.01 Score=37.22 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=68.4 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHCCC Q ss_conf 5310046681200179994-399-589998216699----8899999999999853267755510010-26778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EKDLPVFIELLHYISRNKLPCPIPIPRN-DGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gipvP~pi~~~-~G~~~~~~~~k 97 (316) .-++.|..|.--+.|+... ..| .+.+|+...... ...+..|+.+|.+|....+. ..+-.- ....+ ...+. T Consensus 18 ~~~~~IG~G~fG~Vy~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~H~nIv--~l~~~f~~~~~~-~~~~~ 94 (343) T cd07878 18 QNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVI--GLLDVFTPATSI-ENFNE 94 (343) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC--EEEEEECCCCCC-CCCCE T ss_conf 873697316084999999899998999999882012358899999999999866898941--178885146655-55876 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.++++. |..+ ..+-+. ..++ ..... .....+...+..+.+ T Consensus 95 ~~lv~e~~-g~~L---------------~~~~k~-~~l~--------e~~i~------------~i~~Qil~aL~ylHs- 136 (343) T cd07878 95 VYLVTNLM-GADL---------------NNIVKC-QKLS--------DEHVQ------------FLIYQLLRGLKYIHS- 136 (343) T ss_pred EEEEEECC-CCCH---------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH- T ss_conf 99998058-9679---------------999862-9999--------99999------------999999999999988- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 5210777444022346422562796048731621356 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++++...-++||+.|.. T Consensus 137 ------~~IIHRDLKP~NILl~~~~~vKL~DFGlA~~ 167 (343) T cd07878 137 ------AGIIHRDLKPSNVAVNEDCELRILDFGLARQ 167 (343) T ss_pred ------CCCEECCCCHHHEEECCCCCEEEEECCCCEE T ss_conf ------8855466872554686778779841446611 No 212 >cd06653 STKc_MEKK3_like_1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating Probab=97.30 E-value=0.0023 Score=41.44 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=68.1 Q ss_pred CCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----HH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HCCCCE Q ss_conf 46681200179994-399-589998216699----88---999999999998532677555100102677875-224515 Q gi|254780795|r 30 IIHGVENSNFVIQT-SKG-TFILTIYEKRMN----EK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF-LCKKPA 99 (316) Q Consensus 30 i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~-~~~k~~ 99 (316) |..|.--+.|++.. +.| .|.+|+...... .. .+..|+.+|..|.. |.+++-.+ .+.. -+++.+ T Consensus 10 iG~G~fg~Vy~~~~~~tg~~~AvK~i~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~--~~~~~~~~~~~ 82 (264) T cd06653 10 LGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRH-----DRIVQYYG--CLRDPEEKKLS 82 (264) T ss_pred EECCCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE--EEECCCCCEEE T ss_conf 722868499999988999799999985673246659999999999999987799-----99783999--99938998899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++. ..+ .. ...++ .... ......+...+..+.+ T Consensus 83 ivmEy~~gg~L~-----------~~l---~~-~~~l~--------e~~~------------~~~~~qi~~al~ylH~--- 124 (264) T cd06653 83 IFVEYMPGGSIK-----------DQL---KA-YGALT--------ENVT------------RRYTRQILQGVSYLHS--- 124 (264) T ss_pred EEEECCCCCCHH-----------HHH---HH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 999814959889-----------999---87-49999--------9999------------9999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||.+.+...-++||+.|. T Consensus 125 ----~~iiHRDiKp~NIL~~~~~~vKl~DFG~a~ 154 (264) T cd06653 125 ----NMIVHRDIKGANILRDSAGNVKLGDFGASK 154 (264) T ss_pred ----CCEEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf ----997766577899548899999998689872 No 213 >cd05591 STKc_nPKC_epsilon STKc_nPKC_epsilon: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes Probab=97.30 E-value=0.0035 Score=40.22 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=67.0 Q ss_pred CCCCEEEEEEEEECC-C-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 668120017999439-9-58999821669--988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTSK-G-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~~-~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++.... | .|.+|+..+.. ...++. .+.++|... ..-|.+++-.+ ..+-.++.+.+++ T Consensus 4 G~G~fG~V~la~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~~----~~Hp~Iv~l~~---~f~~~~~lylvmE 76 (321) T cd05591 4 GKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALA----AKHPFLTALHC---CFQTKDRLFFVME 76 (321) T ss_pred EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEE---EEEECCEEEEEEE T ss_conf 4387929999999999989999998078853846799999999999984----79998895999---9998999999995 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+ ...++ ..... .....+...+..+.+ T Consensus 77 y~~gGdL~--------------~~l~~-~~~l~--------e~~~~------------~~~~qi~~aL~ylH~------- 114 (321) T cd05591 77 YVNGGDLM--------------FQIQR-SRKFD--------EPRSR------------FYAAEVTLALMFLHR------- 114 (321) T ss_pred CCCCCCHH--------------HHHHH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 88998189--------------99987-49999--------99999------------999999999999985------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 115 ~gIiHRDLKPeNILl~~~g~iKL~DFGlak 144 (321) T cd05591 115 HGVIYRDLKLDNILLDAEGHCKLADFGMCK 144 (321) T ss_pred CCEEECCCCCCCCCCCCCCCEEECCCCHHH T ss_conf 977867677655330578857741312322 No 214 >cd05584 STKc_p70S6K STKc_p70S6K: Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p7 Probab=97.30 E-value=0.0045 Score=39.49 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=69.4 Q ss_pred EECCCCCEEEEEEEEE----CCCC-EEEEEECCCC---CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 0046681200179994----3995-8999821669---9889---99999999998532677555100102677875224 Q gi|254780795|r 28 QPIIHGVENSNFVIQT----SKGT-FILTIYEKRM---NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t----~~~~-yiLri~e~~~---~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +.|..|.--+.|++.- +.|+ |.+|+..+.. +..+ +..|.++|..+. -|.+++-.+ ..+-++ T Consensus 2 k~LG~G~fG~V~la~~~~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~~E~~il~~l~-----Hp~Iv~l~~---~f~~~~ 73 (323) T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVK-----HPFIVDLIY---AFQTGG 73 (323) T ss_pred CEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECC T ss_conf 486228981899999745588895899999807884406788999999999998679-----989890999---999899 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) ..+.+++|++|..+. ..+.+ .+ ........ ....++...+..+.+ T Consensus 74 ~lylVmEy~~GGdL~--------------~~l~~--~~-------~~~e~~~~------------~~~~qi~~aL~ylH~ 118 (323) T cd05584 74 KLYLILEYLSGGELF--------------MHLER--EG-------IFMEDTAC------------FYLSEISLALEHLHQ 118 (323) T ss_pred EEEEEEECCCCCCHH--------------HHHHH--CC-------CCCHHHHH------------HHHHHHHHHHHHHHH T ss_conf 999999647999799--------------99976--49-------99999999------------999999999999974 Q ss_pred HHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 652107774440223464225627-9604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 119 -------~gIiHRDlKPeNILl~~~g~iK-L~DFGlak 148 (323) T cd05584 119 -------QGIIYRDLKPENILLDAQGHVK-LTDFGLCK 148 (323) T ss_pred -------CCEEECCCCCCCCCCCCCCCEE-ECCHHHHH T ss_conf -------9789573662134657899877-41024555 No 215 >cd07879 STKc_p38delta_MAPK13 The catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MA Probab=97.30 E-value=0.0055 Score=38.92 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=68.4 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC-H---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCC Q ss_conf 5310046681200179994-399-589998216699-8---8999999999998532677-5551001026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN-E---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~-~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k 97 (316) .-++.|..|.--+.|+... ..| .+.+|+..+... . .....|+.+|.+|...++. +-....+.. .. ..... T Consensus 18 ~i~~~IG~G~fG~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~~~~~~~~--~~-~~~~~ 94 (342) T cd07879 18 TSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAV--SG-DEFQD 94 (342) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC--CC-CCCCE T ss_conf 9707972271849999998899989999998711227799999999999999746998300478885046--56-66646 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.+++|+.+. +.+.. +-++ ..... ......+...+..+.+ T Consensus 95 ~yiv~e~~~~~-------------------l~~~~-~~~l------~e~~i------------~~i~~qil~aL~ylH~- 135 (342) T cd07879 95 FYLVMPYMQTD-------------------LQKIM-GHPL------SEDKV------------QYLVYQMLCGLKYIHS- 135 (342) T ss_pred EEEEECCCCCC-------------------HHHHH-CCCC------CHHHH------------HHHHHHHHHHHHHHHH- T ss_conf 99996775243-------------------99996-5999------99999------------9999999999999987- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 5210777444022346422562796048731621356 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .|+||.|+.|.|||++++...-++||+.|.. T Consensus 136 ------~gIiHRDlKPeNILl~~~~~vKL~DFGlAr~ 166 (342) T cd07879 136 ------AGIIHRDLKPGNLAVNEDCELKILDFGLARH 166 (342) T ss_pred ------CCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf ------8845576866884686778669985657744 No 216 >cd07880 STKc_p38gamma_MAPK12 The catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MA Probab=97.30 E-value=0.005 Score=39.23 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=70.2 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHCCC Q ss_conf 5310046681200179994-399-5899982166-998---89999999999985326775551001-026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLPCPIPIPR-NDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gipvP~pi~~-~~G~~~~~~~~k 97 (316) .-++.|..|.--+.|.+.- .+| .+.+|+..+. .+. ...-.++.+|.+|...++- ..+.. .....+.. .+. T Consensus 18 ~i~~~IG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~h~nIv--~l~~~f~~~~~~~~-~~~ 94 (343) T cd07880 18 RDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVI--GLLDVFTPDLSLDR-FHD 94 (343) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCC-CCE T ss_conf 885797216274999999889998999999873443869999999999999866898956--17789832775455-660 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.+++|+ |..+ +..+ +. ..++ .... ......+...+..+.+ T Consensus 95 ~ylv~e~~-g~~L-----------~~~~----k~-~~l~--------e~~i------------~~i~~Qil~aL~ylH~- 136 (343) T cd07880 95 FYLVMPFM-GTDL-----------GKLM----KH-EKLS--------EDRI------------QFLVYQMLKGLKYIHA- 136 (343) T ss_pred EEEEEECC-CCCH-----------HHHH----HC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH- T ss_conf 79999468-8679-----------9998----64-9989--------9999------------9999999999999997- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 5210777444022346422562796048731621356 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .|+||.|+.|.|||++++...-++||+.|.. T Consensus 137 ------~gIiHRDLKPeNILl~~~~~vKl~DFGla~~ 167 (343) T cd07880 137 ------AGIIHRDLKPGNLAVNEDCELKILDFGLARQ 167 (343) T ss_pred ------CCCCCCCCCHHHEEECCCCCEEEEECCCCCC T ss_conf ------8964156743656886778579734567744 No 217 >cd07862 STKc_CDK6 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cyt Probab=97.29 E-value=0.011 Score=37.10 Aligned_cols=143 Identities=19% Similarity=0.221 Sum_probs=73.3 Q ss_pred EEECCCCCEEEEEEEEE--CCCCE-EEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHCCC Q ss_conf 10046681200179994--39958-999821669988----99999999999853267755510010267787--52245 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT--SKGTF-ILTIYEKRMNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG--FLCKK 97 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t--~~~~y-iLri~e~~~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~--~~~~k 97 (316) ++.|..|.--+.|++.. +.+++ .+|+.......+ ..-.|+.+|.+|.. +.-|.+++-.+=-... .-.++ T Consensus 6 ~~~iG~G~fg~V~~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~~--~~HpnIv~l~d~~~~~~~~~~~~ 83 (290) T cd07862 6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET--FEHPNVVRLFDVCTVSRTDRETK 83 (290) T ss_pred EEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEEEEECCCCCCCE T ss_conf 1586414380999999989899899999984000330448999999999997615--68999888987885224578876 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.++++++|.- ...+-+... .++ .... . ......+...+..+.+ T Consensus 84 ~~iv~E~~~~~L------------~~~l~~~~~--~~~--------~~~~----i--------~~i~~Qil~al~ylH~- 128 (290) T cd07862 84 LTLVFEHVDQDL------------TTYLDKVPE--PGV--------PTET----I--------KDMMFQLLRGLDFLHS- 128 (290) T ss_pred EEEEEECCCCCH------------HHHHHHCCC--CCC--------CHHH----H--------HHHHHHHHHHHHHHHH- T ss_conf 999997799988------------999986667--898--------9999----9--------9999999999999998- Q ss_pred HHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 52107774440223464225627-9604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .++||.|+.|.|||++. +++. ++||+.|. T Consensus 129 ------~~IiHRDlKPeNILl~~~~~vK-l~DFGla~ 158 (290) T cd07862 129 ------HRVVHRDLKPQNILVTSSGQIK-LADFGLAR 158 (290) T ss_pred ------CCCEECCCCHHHEEECCCCCEE-ECCCCCCE T ss_conf ------8934354645235898999979-73234305 No 218 >pfam07714 Pkinase_Tyr Protein tyrosine kinase. Probab=97.29 E-value=0.0092 Score=37.49 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=70.4 Q ss_pred ECCCCCEEEEEEEEEC-----CC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 0466812001799943-----99-589998216699889---99999999998532677555100102677875224515 Q gi|254780795|r 29 PIIHGVENSNFVIQTS-----KG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~-----~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) .|..|.--+.|+..-. .+ ++.+|++........ +-.|+++|..|. -|.+++-. | +..-.+..+ T Consensus 6 ~iG~G~fg~Vy~~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~~l~~l~-----HpnIV~~~-~--~~~~~~~~~ 77 (258) T pfam07714 6 KLGEGAFGEVYKGTLKGLGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS-----HPNIVRLL-G--VCTQGEPLY 77 (258) T ss_pred EEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-E--EEEECCEEE T ss_conf 995087839999999378775684999999894489899999999999998689-----99884287-7--997899889 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++.. . |+.....++ +... ..+...+...+..+.+ T Consensus 78 lvmEy~~~G~L~~-----------~---l~~~~~~l~-----------~~~~---------~~i~~qi~~gl~yLH~--- 120 (258) T pfam07714 78 IVTEYMPGGDLLD-----------F---LRKHGEKLT-----------LKDL---------LQMALQIAKGMEYLES--- 120 (258) T ss_pred EEEECCCCCCHHH-----------H---HHHCCCCCC-----------HHHH---------HHHHHHHHHHHHHHHH--- T ss_conf 9997689990899-----------9---986589979-----------9999---------9999999999999985--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.|.|||++++...-+.||+.|. T Consensus 121 ----~~iiHrDiKp~NiLl~~~~~~Kl~DFGla~ 150 (258) T pfam07714 121 ----KNFVHRDLAARNCLVSENLVVKISDFGLSR 150 (258) T ss_pred ----CCEEECCCCCEEEEECCCCCEEEEECCCCE T ss_conf ----997516676305898799939998467876 No 219 >cd07852 STKc_MAPK15 The catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 subfamily. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extrac Probab=97.29 E-value=0.002 Score=41.77 Aligned_cols=143 Identities=17% Similarity=0.255 Sum_probs=70.5 Q ss_pred HHHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 999848998605310046681200179994-3995-899982166-9988---999999999998532677555100102 Q gi|254780795|r 14 SFVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRND 87 (316) Q Consensus 14 ~il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~ 87 (316) .++++|.+. +.|..|.--+.|+... .+|+ |.+|...+. .+.. ..-.|+.+|..|..+ |.+++-.+ T Consensus 4 ~i~~rY~i~-----~~iG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~~l~~l~~H----pnIv~l~~ 74 (337) T cd07852 4 HILRKYEIL-----QKLGKGAYGIVWKAIDRKTGEVVALKKIFDAFRNATDAQRTFREIMFLQELGDH----PNIVKLLN 74 (337) T ss_pred HHHHCCEEE-----EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHCC----CCEEEEEE T ss_conf 165228870-----698427382999999889998999999882652958899999999999984079----99706989 Q ss_pred HHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 67787522-45155786478870768998999999998643675306875433231124564576675200155227889 Q gi|254780795|r 88 GKLYGFLC-KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKE 166 (316) Q Consensus 88 G~~~~~~~-~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (316) .+..-+ ...+.+++|++|. ||...+. +....... ...... T Consensus 75 --~~~~~~~~~~ylV~Ey~~~~-------------------L~~~i~~------~~~~e~~~------------~~i~~q 115 (337) T cd07852 75 --VIKAENDKDIYLVFEYMETD-------------------LHAVIRA------NILEDIHK------------RYIMYQ 115 (337) T ss_pred --EEEECCCCEEEEEEECCCCC-------------------HHHHHHC------CCCCHHHH------------HHHHHH T ss_conf --99816997799999347998-------------------8999863------89999999------------999999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCC Q ss_conf 99999988876521077744402234642256279-60487316213 Q gi|254780795|r 167 IDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFS 212 (316) Q Consensus 167 l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~ 212 (316) +...+..+.+ .|+||.|+.|.|||++.+ ++. ++||+.| T Consensus 116 il~aL~ylH~-------~gIiHRDIKPeNILl~~~~~iK-l~DFGla 154 (337) T cd07852 116 LLKALKYIHS-------GNVIHRDLKPSNILLNSDCRVK-LADFGLA 154 (337) T ss_pred HHHHHHHHHH-------CCCCCCCCCHHHEEECCCCCCC-CCCCCEE T ss_conf 9999999987-------8854177866886886889851-2445412 No 220 >cd05592 STKc_nPKC_theta_delta STKc_nPKC_theta_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-del Probab=97.28 E-value=0.0033 Score=40.38 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=66.7 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-58999821669--988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... .| .|.+|+..+.. ...++. .+.++|.. ...-|.+++-.. ...-.+..+.+++ T Consensus 4 G~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~e~~il~~----~~~hp~Iv~l~~---~f~~~~~~ylvmE 76 (316) T cd05592 4 GKGSFGKVMLAELKGTNEYYAIKALKKDVVLEDDDVECTMVERRVLIL----AWEHPFLTHLFC---TFQTKEHLFFVME 76 (316) T ss_pred EECCCEEEEEEEECCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHH----HCCCCCEEEEEE---EEEECCEEEEEEE T ss_conf 638893999999999998999999827882371479999999999998----479997866999---9998999999996 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+... ..++ ..... .....+...+..+.+ T Consensus 77 y~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~yLH~------- 114 (316) T cd05592 77 YLNGGDLM--------------FHIQSS-GRFD--------EARAR------------FYAAEIICGLQFLHK------- 114 (316) T ss_pred CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 78998889--------------998655-9999--------99999------------999999999999997------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 115 ~~IiHRDlKPeNILld~~g~vKL~DFGlak 144 (316) T cd05592 115 KGIIYRDLKLDNVLLDRDGHIKIADFGMCK 144 (316) T ss_pred CCCEEEECCCCCCCCCCCCCEEEEECCCCC T ss_conf 890531147766573789988982056330 No 221 >cd05587 STKc_cPKC STKc_cPKC: Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and ga Probab=97.28 E-value=0.0061 Score=38.65 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=69.8 Q ss_pred EEECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 1004668120017999439-9-5899982166--9988999---999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.-.+ | .|.+|+..+. ....++. .+.++|..+.... -+++-. + ..+-.++.+ T Consensus 5 lk~LG~G~fG~V~la~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~~~~~~----~Iv~l~-~--~f~~~~~ly 77 (324) T cd05587 5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP----FLTQLH-S--CFQTMDRLY 77 (324) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCC----EEEEEE-E--EEEECCEEE T ss_conf 279631769099999999999899999983788328578999999999998636998----283899-9--999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 78 lvmEy~~GGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~ylH~--- 119 (324) T cd05587 78 FVMEYVNGGDLM--------------YHIQQV-GKFK--------EPHAV------------FYAAEIAIGLFFLHS--- 119 (324) T ss_pred EEEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999487998489--------------999980-9999--------99999------------999999999999998--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 107774440223464225627-9604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 120 ----~~IiHRDLKPeNILl~~~g~iK-L~DFGlak 149 (324) T cd05587 120 ----KGIIYRDLKLDNVMLDAEGHIK-IADFGMCK 149 (324) T ss_pred ----CCCEECCCCCCCEEECCCCCEE-EEECCHHH T ss_conf ----8946055675332575689788-60043123 No 222 >cd06635 STKc_TAO1 Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an im Probab=97.27 E-value=0.0024 Score=41.24 Aligned_cols=157 Identities=15% Similarity=0.225 Sum_probs=84.1 Q ss_pred CCHHHHHHHHHHCCCC-CEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCC Q ss_conf 8999999999848998-6053100466812001799943-99-5899982166--998---8999999999998532677 Q gi|254780795|r 7 PPQKEIQSFVQEYAIG-QLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLP 78 (316) Q Consensus 7 ls~~el~~il~~y~lg-~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gip 78 (316) |...||..+.-.=|.+ ....++.|..|.--+.|+..-. .| .|.+|..... .+. ..+..|+++|..|... T Consensus 9 ~~~~~~~~~~~~~d~~k~y~~l~~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~Hp--- 85 (317) T cd06635 9 LKDPEIAELFFKEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHP--- 85 (317) T ss_pred CCCCCHHHHCCCCCHHHCCEEEEEECCCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC--- T ss_conf 89987666300789566387108951381829999998899979999998633516879999999999999977998--- Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 55510010267787522451557864788707689989999999986436753068754332311245645766752001 Q gi|254780795|r 79 CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDK 158 (316) Q Consensus 79 vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~ 158 (316) .+++-.+ ...-++..+.+++|++|.. . ..+ ..+. ..++ ..... T Consensus 86 --nIV~~~~---~~~~~~~~~ivmEy~~G~~------~------~l~-~~~~--~~l~--------e~~~~--------- 128 (317) T cd06635 86 --NSIEYKG---CYLREHTAWLVMEYCLGSA------S------DLL-EVHK--KPLQ--------EVEIA--------- 128 (317) T ss_pred --CCCEEEE---EEEECCEEEEEEEECCCCH------H------HHH-HHHC--CCCC--------HHHHH--------- T ss_conf --9980999---9998998899999528985------8------999-9826--9999--------99999--------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 552278899999998887652107774440223464225627-96048731621356 Q gi|254780795|r 159 VDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 159 ~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) .....+...+..+.+ .|+||.|+.|.|||+++ +.+. +.||+.|.. T Consensus 129 ---~i~~qil~aL~ylH~-------~~IiHRDLKp~NILl~~~~~vK-l~DFG~a~~ 174 (317) T cd06635 129 ---AITHGALQGLAYLHS-------HNMIHRDIKAGNILLTEPGQVK-LADFGSASI 174 (317) T ss_pred ---HHHHHHHHHHHHHHH-------CCCEEEECCHHHEEECCCCCEE-EEECCCCEE T ss_conf ---999999999999997-------8933322548886788999989-994568744 No 223 >cd07851 STKc_p38 The catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and Probab=97.26 E-value=0.011 Score=37.05 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=69.1 Q ss_pred EEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC-CH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCC Q ss_conf 53100466812001799943-99-58999821669-98---8999999999998532677-5551001026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM-NE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~-~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k 97 (316) .-++.|..|.--+.|..... .| .+.+|+..+.. +. ..+-.|+.+|.+|...+|- .-......+ .. ...+. T Consensus 18 ~i~~~IG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~d~f~~~~--~~-~~~~~ 94 (343) T cd07851 18 QNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPAS--SL-EDFQD 94 (343) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CC-CCCCE T ss_conf 8846983172949999998899989999998822249799999999999999757999541788883177--65-55765 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.+++++.| .+ . ++ +. ...++ ..... .....+...+..+.+ T Consensus 95 ~yiv~e~~~~-~L-----~---~~---i~-----~~~l~--------~~~i~------------~i~~qil~aL~ylH~- 136 (343) T cd07851 95 VYLVTHLMGA-DL-----N---NI---VK-----CQKLS--------DDHIQ------------FLVYQILRGLKYIHS- 136 (343) T ss_pred EEEEECCCCC-CH-----H---HH---HH-----HCCCC--------HHHHH------------HHHHHHHHHHHHHHH- T ss_conf 8999747897-89-----9---99---97-----08999--------99999------------999999999999987- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 521077744402234642256279604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++++...-|+||+.|. T Consensus 137 ------~~IiHRDlKPeNILl~~~~~vKI~DFGlA~ 166 (343) T cd07851 137 ------AGIIHRDLKPSNIAVNEDCELKILDFGLAR 166 (343) T ss_pred ------CCCEECCCCHHHEEECCCCCEEECCCCCCE T ss_conf ------876337686365588688978871476762 No 224 >cd05068 PTKc_Frk_like Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a Probab=97.26 E-value=0.011 Score=37.06 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=76.9 Q ss_pred EEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 5310046681200179994399-5899982166-9988999999999998532677555100102677875224515578 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) .-.+.|..|.--+.|+....++ +..+|..... .+.+++-.|+++|.-|+. |.+++-. | ....++..+.++ T Consensus 9 ~~~~~iG~G~fg~Vy~~~~~~~~~VAvK~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g--~~~~~~~~~iv~ 80 (261) T cd05068 9 QLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRH-----PKLIQLY-A--VCTLEEPIYIVT 80 (261) T ss_pred EEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCEEE-E--EEEECCEEEEEE T ss_conf 9867983187809999998999899999984788999999999999986899-----6899099-9--999899899999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|.++.. . |+.. + ..... +... -.....+...+..+.+ T Consensus 81 E~~~~G~L~~-----~---------l~~~--~-----~~~l~---~~~~---------~~i~~qia~gl~yLH~------ 121 (261) T cd05068 81 ELMKYGSLLE-----Y---------LQGG--A-----GRALK---LPQL---------IDMAAQVASGMAYLEA------ 121 (261) T ss_pred ECCCCCCHHH-----H---------HHHC--C-----CCCCC---HHHH---------HHHHHHHHHHHHHHHH------ T ss_conf 9069998999-----9---------9637--8-----88899---9999---------9999999999999986------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|.||+.+. T Consensus 122 -~~iiHrDLKp~NILl~~~~~vKl~DFGls~ 151 (261) T cd05068 122 -QNYIHRDLAARNVLVGENNICKVADFGLAR 151 (261) T ss_pred -CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf -797206566155898899968998343212 No 225 >cd05039 PTKc_Csk_like Catalytic Domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk Probab=97.25 E-value=0.0041 Score=39.75 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=75.7 Q ss_pred EECCCCCEEEEEEEEECCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf 00466812001799943995899982166-99889999999999985326775551001026778752245155786478 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSKGTFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK 106 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~~~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~ 106 (316) +.|..|.--+.|+-.....+..+|++... ...+++-.|+++|..|.. |.+++-. | +....+..+.+++|++ T Consensus 12 ~~iG~G~fg~Vy~g~~~g~~VAiK~~~~~~~~~~~f~~E~~~l~~l~H-----pNIv~~~-g--~~~~~~~~~iV~Ey~~ 83 (256) T cd05039 12 ATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRH-----PNLVQLL-G--VVLQGNPLYIVTEYMA 83 (256) T ss_pred EEEEECCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEEEECCC T ss_conf 399208980899999999199999988886569999999999985899-----8882088-8--9988999999997589 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 87076899899999999864367530687543323112456457667520015522788999999988876521077744 Q gi|254780795|r 107 GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGI 186 (316) Q Consensus 107 G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~ 186 (316) |.++.. . ++... ..... +.... .....+...+..+.+ +++ T Consensus 84 ~gsL~~-----~---------l~~~~-------~~~l~---~~~~~---------~i~~~ia~gl~yLH~-------~~i 123 (256) T cd05039 84 KGSLVD-----Y---------LRSRG-------RAVIT---LAQQL---------GFALDVCEGMEYLEE-------KNF 123 (256) T ss_pred CCCHHH-----H---------HHHCC-------CCCCC---HHHHH---------HHHHHHHHHHHHHHH-------CCC T ss_conf 997899-----9---------97548-------98999---99999---------999999999999975-------893 Q ss_pred EECCCCCCCEEECCCCCEEEECCCCCCCC Q ss_conf 40223464225627960487316213568 Q gi|254780795|r 187 IHADLFPDNVLFYNNKIMGLIDFYFSCND 215 (316) Q Consensus 187 IHgDl~~~NiL~~~~~i~giIDF~~~~~~ 215 (316) +|+|+.+.|||++++...-+.||+.+... T Consensus 124 iHrDlK~~NiLl~~~~~~Kl~DFGls~~~ 152 (256) T cd05039 124 VHRDLAARNVLVSEDLVAKVSDFGLAKEA 152 (256) T ss_pred EECCCCCCEEEECCCCCEEEEECCCCEEC T ss_conf 32546751388899994899305467006 No 226 >cd05623 STKc_MRCK_alpha STKc_MRCK_alpha: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Probab=97.25 E-value=0.01 Score=37.17 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=68.5 Q ss_pred EEECCCCCEEEEEEEEECC-CC-EEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 1004668120017999439-95-899982166--99889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-GT-FILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~~-yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++...+ |+ |.+|+..+. ....+ +..+.++|..+ .-|.+++-.. ..+-.+..+ T Consensus 6 ~~~IG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~-----~hp~Iv~l~~---~f~~~~~~y 77 (332) T cd05623 6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG-----DNQWITTLHY---AFQDENNLY 77 (332) T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHC-----CCCCEEEEEE---EEEECCEEE T ss_conf 57862173709999999899979999998378924789999999999999858-----9997666999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+.+ ..++ ..... .....+...+..+.+ T Consensus 78 lvmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~~~------------~~~~qi~~aL~ylH~--- 120 (332) T cd05623 78 LVMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYLAEMVIAIDSVHQ--- 120 (332) T ss_pred EEEEECCCCCHH-----------HHHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999944797389-----------9998606---8899--------99999------------999999999999998--- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCC Q ss_conf 107774440223464225627-960487316213 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316) +|+||.|+.|.|||++. +.+. ++||+.| T Consensus 121 ----~~IiHRDLKPeNILl~~~g~iK-L~DFG~a 149 (332) T cd05623 121 ----LHYVHRDIKPDNILMDMNGHIR-LADFGSC 149 (332) T ss_pred ----CCCEECCCCCCCCCCCCCCCEE-EECCHHH T ss_conf ----7975311257660335899889-8300032 No 227 >cd05038 PTKc_Jak_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut Probab=97.25 E-value=0.015 Score=36.11 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=77.2 Q ss_pred EEEEEECCCCCEEEEEEEEEC-----CCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 053100466812001799943-----995-8999821669988---9999999999985326775551001026778752 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTS-----KGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~-----~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +.-++.|..|.--+.|+.+.+ .|+ ..+|+.+...... ++..|+.+|..|+. |.+++-. |-..... T Consensus 6 ~~~~~~IG~G~fG~Vy~~~~~~~~~~~~~~VAvK~i~~~~~~~~~~~f~~Ei~~l~~l~H-----pnIv~l~-g~~~~~~ 79 (279) T cd05038 6 LKLIKQLGEGHFGTVYLGTYDPPDDNTGEIVAVKKLNTSGVEAHRQDFEREIEIMRTLDH-----ENIVKYK-GVSEEPG 79 (279) T ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-EEEECCC T ss_conf 799789703748099999995785877839999998845597899999999999986799-----8976188-9996289 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) .+..+.+++|++|.++.. . |+.....+ . +...+ .+...+...+.++ T Consensus 80 ~~~~~iV~Ey~~~GsL~~-----------~---l~~~~~~~--------~---~~~~~---------~i~~qia~gL~yL 125 (279) T cd05038 80 GRSLSLIMEYLPSGSLRD-----------Y---LRRHRDQL--------N---LKRLL---------LFALQIAKGMDYL 125 (279) T ss_pred CCEEEEEEEECCCCCHHH-----------H---HHHCCCCC--------C---HHHHH---------HHHHHHHHHHHHH T ss_conf 987999999179985899-----------9---86158999--------9---99999---------9999999999988 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 876521077744402234642256279604873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+ +++||+|+.+.|||++.+...-|.||+.|. T Consensus 126 H~-------~~iiHrDlK~~NILl~~~~~~Ki~DFGls~ 157 (279) T cd05038 126 GS-------KRLIHRDLAARNILVDSEDLVKISDFGLAK 157 (279) T ss_pred HH-------CCEEECCCCCCCEEECCCCEEEEECCCCCC T ss_conf 75-------897655256210778899909993474532 No 228 >cd05603 STKc_SGK2 STKc_SGK2: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Probab=97.23 E-value=0.0059 Score=38.74 Aligned_cols=135 Identities=18% Similarity=0.298 Sum_probs=67.5 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 466812001799943-99-58999821669--9889---99999999998532677555100102677875224515578 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) |..|.--+.|++.-. +| .|.+|+..+.. ...+ +..+.+.| + +.+.-|.+++-.. ..+-.+..+.++ T Consensus 3 IG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il--l--~~l~Hp~Iv~l~~---~f~~~~~lyivm 75 (321) T cd05603 3 IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVL--L--KNLKHPFLVGLHY---SFQTAEKLYFVL 75 (321) T ss_pred EEECCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHH--H--HHCCCCCCCCEEE---EEEECCEEEEEE T ss_conf 62387949999998899989999998378804889999999999999--9--8689989990999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 76 Ey~~gGdL~--------------~~l~~~-~~~~--------e~~a~------------~~~~qi~~aL~yLH~------ 114 (321) T cd05603 76 DYVNGGELF--------------FHLQRE-RCFL--------EPRAR------------FYAAEVASAIGYLHS------ 114 (321) T ss_pred ECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------ T ss_conf 687998699--------------999874-9999--------99999------------999999999999998------ Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 774440223464225627-96048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) +++||.|+.|.|||++. +.+. ++||+.|.. T Consensus 115 -~~IiHRDLKPeNILld~~g~iK-L~DFGlak~ 145 (321) T cd05603 115 -LNIIYRDLKPENILLDSQGHVV-LTDFGLCKE 145 (321) T ss_pred -CCCEECCCCCCCCCCCCCCCEE-ECCCHHHHH T ss_conf -8944024365540115889888-513254331 No 229 >PTZ00284 protein kinase; Provisional Probab=97.23 E-value=0.015 Score=36.17 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=25.5 Q ss_pred CCEEECCCCCCCEEECCC-----------------CCEEEECCCCCCCCH Q ss_conf 744402234642256279-----------------604873162135680 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNN-----------------KIMGLIDFYFSCNDF 216 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~-----------------~i~giIDF~~~~~~~ 216 (316) .++||.|+.|.|||+... +|. ||||+.||... T Consensus 251 ~~IIHtDLKPENILL~~~~~~~d~~~~~~~~~~~~~IK-lIDFGSAc~~~ 299 (467) T PTZ00284 251 LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVR-ICDLGGCCDER 299 (467) T ss_pred CCEEECCCCHHHEEECCCCCCCCCCCCCCCCCCCCCEE-EEECCCCCCCC T ss_conf 79774238999931256775445322345789876379-94357666677 No 230 >cd06628 STKc_MAPKKK_Byr2_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important Probab=97.23 E-value=0.005 Score=39.21 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=66.7 Q ss_pred CCCEEEEEEEEE-CCCC-EEEEEECCCC-CH----------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 681200179994-3995-8999821669-98----------899999999999853267755510010267787522451 Q gi|254780795|r 32 HGVENSNFVIQT-SKGT-FILTIYEKRM-NE----------KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 32 ~G~~Ntny~v~t-~~~~-yiLri~e~~~-~~----------~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) .|.--+.|+..- ..|+ |.+|..+... .. +.+..|+.+|..|. -|.+++-.+ ...-.+.. T Consensus 10 ~G~fg~Vy~~~~~~~g~~vAiK~~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~-----HpnIv~~~~---~~~~~~~~ 81 (267) T cd06628 10 SGSFGSVYLGMNAHSGELMAVKQVEIPSNSIGVQDRKRKMLDALQREINLLKELH-----HENIVQYLG---SSQDAGHL 81 (267) T ss_pred ECCCEEEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCEEE---EEEECCEE T ss_conf 0748199999988999899999995045550267889999999999999998779-----989992999---99789999 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|.++ ...++.. ..++ .... ......+...++.+.+ T Consensus 82 ~iv~Ey~~gg~L--------------~~~l~~~-~~l~--------e~~~------------~~~~~qil~gL~yLH~-- 124 (267) T cd06628 82 NIFLEYVPGGSV--------------AALLNNY-GAFE--------ESLV------------RNFVRQILKGLNYLHN-- 124 (267) T ss_pred EEEEEECCCCCH--------------HHHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 999990396969--------------9999865-9999--------9999------------9999999999999986-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+...-|+||+.|. T Consensus 125 -----~~IiHRDlKp~NILl~~~g~vKl~DFGla~ 154 (267) T cd06628 125 -----RGIIHRDIKGANILVDNKGGIKISDFGISK 154 (267) T ss_pred -----CCCEEEECCHHHEEECCCCCEEEEECCCCE T ss_conf -----890432167777668899989999577874 No 231 >cd06651 STKc_MEKK3 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor Probab=97.22 E-value=0.0028 Score=40.87 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=70.2 Q ss_pred HCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCC----H---HHHHHHHHHHHHHHHCCCCCCCCCCCCHH Q ss_conf 48998605310046681200179994-399-589998216699----8---89999999999985326775551001026 Q gi|254780795|r 18 EYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMN----E---KDLPVFIELLHYISRNKLPCPIPIPRNDG 88 (316) Q Consensus 18 ~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~----~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G 88 (316) +|.+|++ |..|.--+.|++.. .+| .|.+|+...... . ..+..|+.+|..|.. |.+++-.+ T Consensus 3 ny~~~~~-----lG~G~fg~Vy~~~~~~tg~~~AvK~i~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~~- 71 (266) T cd06651 3 NWRRGKL-----LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQH-----ERIVQYYG- 71 (266) T ss_pred CCEECCE-----EECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEEE- T ss_conf 9883538-----512758199999988999799999995363543669999999999999985899-----99713899- Q ss_pred HHHHHH-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 778752-2451557864788707689989999999986436753068754332311245645766752001552278899 Q gi|254780795|r 89 KLYGFL-CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI 167 (316) Q Consensus 89 ~~~~~~-~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (316) .+..- .+..+.+++|++|..+.. .+ ... ..++ .... ......+ T Consensus 72 -~~~~~~~~~l~ivmEy~~gg~L~~-----------~l---~~~-~~l~--------e~~~------------~~~~~qi 115 (266) T cd06651 72 -CLRDRAEKTLTIFMEYMPGGSVKD-----------QL---KAY-GALT--------ESVT------------RKYTRQI 115 (266) T ss_pred -EEEECCCCEEEEEEECCCCCCHHH-----------HH---HHC-CCCC--------HHHH------------HHHHHHH T ss_conf -999689978999997119598899-----------99---874-9999--------9999------------9999999 Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 9999988876521077744402234642256279604873162135 Q gi|254780795|r 168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ...+..+.+ +++||.|+.|.|||.+.+...-++||+.|. T Consensus 116 l~aL~ylH~-------~~IiHRDlKp~NIL~~~~~~vKl~DFG~a~ 154 (266) T cd06651 116 LEGMSYLHS-------NMIVHRDIKGANILRDSAGNVKLGDFGASK 154 (266) T ss_pred HHHHHHHHH-------CCEEECCCCHHHEEECCCCCEEECCCCCCC T ss_conf 999999986-------996524387899678789998984157311 No 232 >cd05083 PTKc_Chk Catalytic Domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki Probab=97.22 E-value=0.016 Score=35.87 Aligned_cols=139 Identities=11% Similarity=0.130 Sum_probs=76.7 Q ss_pred CCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 46681200179994399589998216699889999999999985326775551001026778752245155786478870 Q gi|254780795|r 30 IIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSP 109 (316) Q Consensus 30 i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~ 109 (316) |..|.--+.|.-+....++.+|++........+-.|+.+|..|... .+++-. |-. ..+..+.+++|++|.+ T Consensus 14 iG~G~fG~Vy~~~~~g~~vAvK~i~~~~~~~~f~~E~~~l~~l~Hp-----nIv~~~-g~~---~~~~~~iv~Ey~~~Gs 84 (254) T cd05083 14 IGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHK-----NLVRLL-GVI---LHNGLYIVMELMSKGN 84 (254) T ss_pred EECCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCC-----CCCCEE-EEE---EECCEEEEEECCCCCC T ss_conf 8208981899999999299999978787899999999999867995-----899499-999---8798799998589996 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEC Q ss_conf 76899899999999864367530687543323112456457667520015522788999999988876521077744402 Q gi|254780795|r 110 LNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHA 189 (316) Q Consensus 110 ~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHg 189 (316) +.. -|+... .. ... +...+ .....+...+..+.+ +++||+ T Consensus 85 L~~--------------~L~~~~-~~------~~~---~~~~~---------~i~~qia~gl~yLH~-------~~iiHr 124 (254) T cd05083 85 LVN--------------FLRTRG-RA------LVS---VIQLL---------QFSLDVAEGMEYLES-------KKLVHR 124 (254) T ss_pred HHH--------------HHHHCC-CC------CCC---HHHHH---------HHHHHHHHHHHHHHC-------CCCCCC T ss_conf 999--------------998669-98------899---99999---------999999999999825-------995356 Q ss_pred CCCCCCEEECCCCCEEEECCCCCCCCHH Q ss_conf 2346422562796048731621356800 Q gi|254780795|r 190 DLFPDNVLFYNNKIMGLIDFYFSCNDFL 217 (316) Q Consensus 190 Dl~~~NiL~~~~~i~giIDF~~~~~~~~ 217 (316) |+.+.|||++.+...-|-||+.+..... T Consensus 125 DLK~~NILi~~~~~~Ki~DFGls~~~~~ 152 (254) T cd05083 125 DLAARNILVSEDGVAKVSDFGLARVGSM 152 (254) T ss_pred CCCCCCEEECCCCCEEEEECCCCEECCC T ss_conf 0571424388999099941787657777 No 233 >KOG0592 consensus Probab=97.21 E-value=0.00082 Score=44.31 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=72.7 Q ss_pred CCCCCEEEEEEEEE--CCCCEEEEEECCCCC-----HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC--CCEE Q ss_conf 46681200179994--399589998216699-----88999999999998532677555100102677875224--5155 Q gi|254780795|r 30 IIHGVENSNFVIQT--SKGTFILTIYEKRMN-----EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK--KPAN 100 (316) Q Consensus 30 i~~G~~Ntny~v~t--~~~~yiLri~e~~~~-----~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~--k~~~ 100 (316) |..|.--+.|+-+- ++.+|.+||.+++.- ...+--|-+.|..|+.+ |-+++ .+.++++ +.+. T Consensus 81 lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~h----Pgivk-----Ly~TFQD~~sLYF 151 (604) T KOG0592 81 LGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGH----PGIVK-----LYFTFQDEESLYF 151 (604) T ss_pred ECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCEEE-----EEEEEECCCCEEE T ss_conf 13553215777332366752228776378777650631413789999986279----97599-----9998614662588 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|.+| |++|.-|++.+ .| .....+ -..++|...++.+.. T Consensus 152 vLe~A~n--------------Gdll~~i~K~G-sf-------------de~caR-------~YAAeIldAleylH~---- 192 (604) T KOG0592 152 VLEYAPN--------------GDLLDLIKKYG-SF-------------DETCAR-------FYAAEILDALEYLHS---- 192 (604) T ss_pred EEEECCC--------------CCHHHHHHHHC-CC-------------HHHHHH-------HHHHHHHHHHHHHHH---- T ss_conf 8872478--------------71899998746-50-------------278899-------999999999999874---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 0777444022346422562796048731621356 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .|+||.|+.|.|||+++|.-+-|-||+-|-. T Consensus 193 ---~GIIHRDlKPENILLd~dmhikITDFGsAK~ 223 (604) T KOG0592 193 ---NGIIHRDLKPENILLDKDGHIKITDFGSAKI 223 (604) T ss_pred ---CCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf ---6812046773346675888588751555432 No 234 >cd05624 STKc_MRCK_beta STKc_MRCK_beta: Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Probab=97.20 E-value=0.016 Score=35.99 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=68.1 Q ss_pred EEECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 1004668120017999439-9-5899982166--99889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++...+ + .|.+|+..+. ....+ +..+.++|.. ..+|.+++-.. ..+-.+..+ T Consensus 6 ~k~LG~G~fG~V~~a~~~~t~~~~AiKvi~k~~~~~~~~~~~~~~E~~il~~-----~~h~~Iv~l~~---~f~~~~~~y 77 (331) T cd05624 6 IKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVN-----GDCQWITTLHY---AFQDENYLY 77 (331) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHH-----CCCCCEEEEEE---EEEECCEEE T ss_conf 5896327580999999989998999999847891378899999999999985-----79996718999---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|..+. ..+.+.+ ..++ ..... .....+...+..+. T Consensus 78 lvmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~~~------------~~~~qil~aL~ylH---- 119 (331) T cd05624 78 LVMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYIAEMVLAIHSIH---- 119 (331) T ss_pred EEEECCCCCCHH-----------HHHHHCC---CCCC--------HHHHH------------HHHHHHHHHHHHHH---- T ss_conf 999615798899-----------9998607---8898--------99999------------99999999999986---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 107774440223464225627960487316213 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+|+||.|+.|.|||++.+...-++||+.| T Consensus 120 ---~~~IiHRDLKPeNILl~~~g~iKL~DFG~a 149 (331) T cd05624 120 ---QLHYVHRDIKPDNVLLDMNGHIRLADFGSC 149 (331) T ss_pred ---HCCEEECCCCCCCCCCCCCCCEEEECCHHH T ss_conf ---366884223665633258997887314132 No 235 >cd05034 PTKc_Src_like Catalytic Domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t Probab=97.20 E-value=0.014 Score=36.29 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=77.1 Q ss_pred EEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 10046681200179994399-5899982166-998899999999999853267755510010267787522451557864 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .+.|..|.--+.|+....++ +..+|+.... .+.+++-.|+++|..|.. |.+++-. | +..-.+..+.+++| T Consensus 11 ~~~iG~G~fG~Vy~~~~~~~~~VAvK~l~~~~~~~~~f~~E~~~l~~l~H-----pnIV~~~-g--~~~~~~~~~iv~Ey 82 (261) T cd05034 11 ERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLEEAQIMKKLRH-----DKLVQLY-A--VCSEEEPIYIVTEY 82 (261) T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEEEEC T ss_conf 25984288838999999999999999987478999999999999986899-----7985599-9--99889989999975 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. .| +. ..+ .... +.... .+...+...+..+.+ + T Consensus 83 ~~~G~L~~-----------~l---~~-~~~------~~l~---~~~~~---------~i~~qia~gl~yLH~-------~ 122 (261) T cd05034 83 MSKGSLLD-----------FL---KS-GEG------KKLR---LPQLV---------DMAAQIAEGMAYLES-------R 122 (261) T ss_pred CCCCCHHH-----------HH---HC-CCC------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------C T ss_conf 89988899-----------97---21-888------8899---99999---------999999999999986-------9 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++||+|+.+.|||++++...-|.||+.|. T Consensus 123 ~iiHrDlKp~NILl~~~~~~Kl~DFGls~ 151 (261) T cd05034 123 NYIHRDLAARNVLVGENLVCKVADFGLAR 151 (261) T ss_pred CCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 95754327275898899979997278755 No 236 >cd07858 STKc_TEY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the acti Probab=97.19 E-value=0.005 Score=39.19 Aligned_cols=142 Identities=14% Similarity=0.211 Sum_probs=67.7 Q ss_pred EEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCC Q ss_conf 5310046681200179994-399-5899982166-998---8999999999998532677-5551001026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k 97 (316) .-++.|..|.--+.|.+.- ..| .|.+|...+. .+. ...-.|+.+|..|...++- +-..+....... .+. T Consensus 8 ~i~k~IG~G~fG~Vy~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~----~~~ 83 (337) T cd07858 8 VPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREA----FND 83 (337) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC----CCE T ss_conf 9817972273859999998899989999998802228788999999999998657999605988870366455----544 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.++++++|. +.++ + +....+ ..... ......+...+..+.+ T Consensus 84 ~yiv~e~~~~~---------L~~~---i----~~~~~l--------~e~~~------------~~i~~Qil~aL~yLH~- 126 (337) T cd07858 84 VYIVYELMDTD---------LHQI---I----RSSQTL--------SDDHC------------QYFLYQLLRGLKYIHS- 126 (337) T ss_pred EEEEEECCCCC---------HHHH---H----HCCCCC--------CHHHH------------HHHHHHHHHHHHHHHH- T ss_conf 89999626974---------7999---8----707999--------99999------------9999999999999977- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 521077744402234642256279604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 127 ------~~IiHRDlKPeNILl~~~~~iKL~DFGlAk 156 (337) T cd07858 127 ------ANVLHRDLKPSNLLLNANCDLKICDFGLAR 156 (337) T ss_pred ------CCCEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf ------895003585698698799988963126663 No 237 >COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism] Probab=97.18 E-value=0.0015 Score=42.53 Aligned_cols=199 Identities=15% Similarity=0.176 Sum_probs=96.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHCCCC---EEEEECCCCC-C-----CCC---- Q ss_conf 589998216699889999999999985326775551001026778-7522451---5578647887-0-----768---- Q gi|254780795|r 47 TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY-GFLCKKP---ANIFSFIKGS-P-----LNH---- 112 (316) Q Consensus 47 ~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~-~~~~~k~---~~L~~~i~G~-~-----~~~---- 112 (316) +-|+|+|++. ...++-.+++..+|...|.|--.|+.. +.- ...+|.+ ++++.|++-. . ..+ T Consensus 108 r~i~k~~rrv--~~g~~P~VE~~~~LtR~g~p~~apLlg---e~~ra~~dG~~ytL~~~q~y~~n~~d~w~~Al~~~rr~ 182 (438) T COG3281 108 RAILKVFRRV--SSGINPDVELNRVLTRAGYPNIAPLLG---EFGRAGADGEAYTLVMLQEYVPNAADGWAWALDSLRRL 182 (438) T ss_pred HHHHHHHHHH--HCCCCCCHHHHHHHHHCCCCCCHHHHH---HHHCCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHH T ss_conf 4899999998--568999646778887514875043300---43036577642001211000476045899999999998 Q ss_pred -------------CCHHHHHHHHHHHHHHHHHCCC------CCCCCCCCCCHHHHHHHH----HHHHHCCCH--HHHHHH Q ss_conf -------------9989999999986436753068------754332311245645766----752001552--278899 Q gi|254780795|r 113 -------------ISDIHCEEIGSMLASMHQKTKN------FHLYRKNTLSPLNLKFLW----AKCFDKVDE--DLKKEI 167 (316) Q Consensus 113 -------------~~~~~~~~lG~~La~lH~~~~~------f~~~r~~~~~~~~~~~~~----~~~~~~~~~--~~~~~l 167 (316) .-......+|..+|.+|.++.+ |+. ....-....|...+ ....+.+.. ....++ T Consensus 183 ~sea~~~~~e~~a~~~~~a~alG~av~~vHsaLA~~sddpafg~-e~~ea~v~~w~~Rla~rls~~~d~l~~p~~ea~~l 261 (438) T COG3281 183 FSEADLYAHESGADFAGEAGALGEAVAEVHSALASCSDDPAFGE-ETDEATVEAWADRLAERLSEAEDLLRGPAAEAPEL 261 (438) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH T ss_conf 86420111100331477898999999999999707766766787-65301499999999999998886531658787999 Q ss_pred HHHHHHH----HHHHHHCCC--CCEEECCCCCCCEEECCCCCEEEECCCCC---------CCCHHHCCHHHHHHHHHH-- Q ss_conf 9999988----876521077--74440223464225627960487316213---------568000198999986431-- Q gi|254780795|r 168 DHEFCFL----KESWPKNLP--TGIIHADLFPDNVLFYNNKIMGLIDFYFS---------CNDFLMYDLSICINAWCF-- 230 (316) Q Consensus 168 ~~~l~~~----~~~~~~~Lp--~g~IHgDl~~~NiL~~~~~i~giIDF~~~---------~~~~~i~DLAi~i~~~c~-- 230 (316) .+....+ .+.+...+- -.=+|||+|.+-||...++.. +|||+-- ..+.++-|+|=.+-++-. T Consensus 262 ~~~~~Al~q~~q~la~~algg~l~RvHGDLHLgQVLvt~g~~~-liDFEGEPsRpl~err~~~sPlrDvAgllRS~DYAa 340 (438) T COG3281 262 LEYAPALLQLFQKLAREALGGVLQRVHGDLHLGQVLVTPGRAL-LIDFEGEPSRPLDERRAPDSPLRDVAGLLRSFDYAA 340 (438) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHEEEECCCEE-EEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9866999999999987654357988705400040463078379-984478988984450178993578999998868888 Q ss_pred ----C----CCCC-----------CCHHHHHHHHHHHHHCC Q ss_conf ----1----6888-----------78788999998876418 Q gi|254780795|r 231 ----D----ENNT-----------YNPSRGFSILNGYNKVR 252 (316) Q Consensus 231 ----~----~~~~-----------~d~~~~~~~l~gY~~vr 252 (316) . ..++ |-.....+|++||-... T Consensus 341 ~~~~q~~~~~~e~a~e~~~~~~~~w~~as~~~fl~gY~aa~ 381 (438) T COG3281 341 YGPLQALGRTDEAADEQRRGEARRWVEASRAAFLDGYAAAS 381 (438) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77652323320356899999999999999999998878875 No 238 >cd05586 STKc_Sck1_like STKc_Sck1_like: Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Probab=97.16 E-value=0.01 Score=37.20 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=66.1 Q ss_pred CCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 6812001799943-99-58999821669--988999---99999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|++... .| .|.+|+..+.. ...++. .+.++|..+... ..|.++.-.. ...-.+..+.+++| T Consensus 3 ~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~--~~p~Iv~l~~---~f~~~~~lylVmEy 77 (330) T cd05586 3 KGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLD--ESPFIVGLKF---SFQTDSDLYLVTDY 77 (330) T ss_pred CCCCEEEEEEEECCCCCEEEEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEE---EEEECCEEEEEEEC T ss_conf 682649999998899989999998478800658899999999999998515--9983858999---99989999999957 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+. ..+.+. ..++ ..... .....+...+..+.+ + T Consensus 78 ~~gGdL~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~-------~ 115 (330) T cd05586 78 MSGGELF--------------WHLQKE-GRFS--------EDRAK------------FYIAELVLALEHLHK-------Y 115 (330) T ss_pred CCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------C T ss_conf 8998889--------------999875-9999--------99999------------999999999999998-------8 Q ss_pred CEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 44402234642256279-604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) |+||.|+.|.|||++.+ .+ -++||+.|. T Consensus 116 gIiHRDLKPeNILl~~~g~i-KL~DFGlak 144 (330) T cd05586 116 DIVYRDLKPENILLDATGHI-ALCDFGLSK 144 (330) T ss_pred CCEECCCCCCCCCCCCCCCE-EECCCCCCC T ss_conf 93340327654111578974-322334001 No 239 >cd05606 STKc_beta_ARK STKc_beta_ARK: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely e Probab=97.14 E-value=0.012 Score=36.78 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=66.2 Q ss_pred CCCEEEEEEEEE-CCC-CEEEEEECCCC-CHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 681200179994-399-58999821669-9889----9999999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQT-SKG-TFILTIYEKRM-NEKD----LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t-~~~-~yiLri~e~~~-~~~~----l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|++.. ++| .|.+|+..+.. .... ...+..++..++.. .+|.++.-.+ ..+-.++.+.+++| T Consensus 4 ~G~fg~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~e~~~~~~~~~~--~~p~Iv~l~~---~~~~~~~lylvmE~ 78 (278) T cd05606 4 RGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG--DCPFIVCMTY---AFHTPDKLCFILDL 78 (278) T ss_pred CCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEE---EEEECCEEEEEEEC T ss_conf 082719999998899989999998488830456689999999999998518--9997879999---99989999999984 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|..+.. .+ .+ .+ ....... ......+...+..+.+ + T Consensus 79 ~~gG~L~~-----------~l---~~--~~-------~~~e~~~------------~~~~~qil~aL~ylH~-------~ 116 (278) T cd05606 79 MNGGDLHY-----------HL---SQ--HG-------VFSEAEM------------RFYAAEIILGLEHMHN-------R 116 (278) T ss_pred CCCCCHHH-----------HH---HH--CC-------CCCHHHH------------HHHHHHHHHHHHHHHH-------C T ss_conf 59986999-----------99---87--59-------9999999------------9999999999999987-------8 Q ss_pred CEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 4440223464225627-9604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) |+||.|+.|.|||+++ +.+. ++||+.|+ T Consensus 117 gIiHRDlKPeNILl~~~g~vK-l~DFGla~ 145 (278) T cd05606 117 FVVYRDLKPANILLDEHGHVR-ISDLGLAC 145 (278) T ss_pred CCEECCCCCCCCCCCCCCCEE-EEECCEEE T ss_conf 988723572002434789779-97557216 No 240 >cd07834 STKc_MAPK The catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylat Probab=97.14 E-value=0.0075 Score=38.07 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=67.0 Q ss_pred EECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHCCCCE Q ss_conf 0046681200179994-399-5899982166-9988---99999999999853267755510010267787--5224515 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG--FLCKKPA 99 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~--~~~~k~~ 99 (316) +.|..|.--+.|+..- .+| .+.+|+..+. .+.. .+..|+.+|..|... .+++-.+--... ...+..+ T Consensus 6 ~~lG~G~fg~Vy~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~rEi~il~~l~Hp-----nIv~l~~~~~~~~~~~~~~~y 80 (330) T cd07834 6 KPIGSGAYGVVCSAVDTRTGKKVAIKKISNVFDDLIDAKRILREIKILRHLKHE-----NIIGLLDIFRPPSPEDFNDVY 80 (330) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEEEEEECCCCCCCCEEE T ss_conf 794226384999999889998999999883014989999999999999976999-----986188999417877787599 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|. . .++ + +. ...+ ...... .....+...+..+.+ T Consensus 81 iVmE~~~~d------L---~~~---i---~~-~~~l--------~e~~~~------------~~~~qil~aL~ylH~--- 121 (330) T cd07834 81 IVTELMETD------L---HKV---I---KS-PQPL--------SEDHIQ------------YFLYQILRGLKYLHS--- 121 (330) T ss_pred EEEECCCCC------H---HHH---H---HC-CCCC--------CHHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 999799988------9---999---9---71-8999--------999999------------999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 107774440223464225627960487316213 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) +|+||.|+.|.|||++.+...-++||+.| T Consensus 122 ----~~IiHRDiKPeNILl~~~~~vKL~DFGla 150 (330) T cd07834 122 ----AGVIHRDLKPSNLLVNSNCDLKICDFGLA 150 (330) T ss_pred ----CCCCCCCCCHHHEEECCCCCEEECCCCCC T ss_conf ----88636767789931566777333113310 No 241 >cd00192 PTKc Catalytic Domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan Probab=97.11 E-value=0.02 Score=35.31 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=69.1 Q ss_pred CCCCCEEEEEEEE--ECC--C-CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 4668120017999--439--9-58999821669988---99999999999853267755510010267787522451557 Q gi|254780795|r 30 IIHGVENSNFVIQ--TSK--G-TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 30 i~~G~~Ntny~v~--t~~--~-~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) |..|.--+.|+-. .+. + ...+|++....... ++..|+.+|..|.. |.+++-. | +..-.+..+.+ T Consensus 3 iG~G~fg~V~~a~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g--~~~~~~~~~iv 74 (261) T cd00192 3 LGEGAFGEVYKGELKGKGGKKTPVAVKTLKEDASDSEREDFLKEAKIMKKLGH-----PNIVRLL-G--VCTEEEPLYLV 74 (261) T ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EEEECCEEEEE T ss_conf 87488828999999779972599999998932799999999999999986899-----8884287-8--99679988999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. . |+...... ......... .... .....+...+..+.+ T Consensus 75 ~Ey~~~GsL~~-----------~---l~~~~~~~-~~~~~~l~~---~~~~---------~~~~qia~gl~yLH~----- 122 (261) T cd00192 75 LEYMEGGDLLD-----------F---LRKSRPVF-SPESSTLSL---KDLL---------SFAYQIASGMEYLAS----- 122 (261) T ss_pred EEECCCCCHHH-----------H---HHHCCCCC-CCCCCCCCH---HHHH---------HHHHHHHHHHHHHHH----- T ss_conf 98069995999-----------9---98635554-444688999---9999---------999999999999976----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.|.|||++.+...-|.||+.|. T Consensus 123 --~~iiHrDiKp~NILl~~~~~~Kl~DFGls~ 152 (261) T cd00192 123 --KNFVHRDLAARNVLVGEDLVVKIADFGLSR 152 (261) T ss_pred --CCCCCCCCCHHHEEECCCCCEEEEECCCCE T ss_conf --995578776787898799968992165765 No 242 >cd05615 STKc_cPKC_alpha STKc_cPKC_alpha: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with ce Probab=97.10 E-value=0.0061 Score=38.67 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=69.2 Q ss_pred EECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 00466812001799943-99-5899982166--9988999---9999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +-|..|.--+.|++... +| .|.+|+..+. ....++. .+.++|..+..+ |-+++-.+ ..+-.++.+. T Consensus 6 ~~LG~G~fG~V~~a~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~----p~Iv~l~~---~f~~~~~~yl 78 (323) T cd05615 6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP----PFLTQLHS---CFQTVDRLYF 78 (323) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEEE---EEEECCEEEE T ss_conf 7953288809999999999989999998578853857899999999999970599----95848999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 79 vmEy~~gGdL~-----------~~l~~~----~~~~--------e~~~~------------~~~~qi~~aL~yLH~---- 119 (323) T cd05615 79 VMEYVNGGDLM-----------YHIQQV----GKFK--------EPQAV------------FYAAEISVGLFFLHR---- 119 (323) T ss_pred EEECCCCCCHH-----------HHHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 99768998278-----------999871----8999--------99999------------999999999999998---- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 07774440223464225627-9604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 120 ---~~IiHRDLKPeNILld~~g~iK-L~DFGlak 149 (323) T cd05615 120 ---RGIIYRDLKLDNVMLDSEGHIK-IADFGMCK 149 (323) T ss_pred ---CCCEECCCCCCCEEECCCCCEE-EEEHHHHH T ss_conf ---8946466774311387899889-85446645 No 243 >cd05604 STKc_SGK3 STKc_SGK3: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Probab=97.09 E-value=0.011 Score=36.90 Aligned_cols=134 Identities=18% Similarity=0.318 Sum_probs=67.5 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-58999821669--9889---999999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... +| .|.+|+..+.. +..+ +..+...+ + +.+.-|.+++-.. ..+-.++.+.+++ T Consensus 4 G~G~fG~V~la~~k~tg~~~AiKvi~k~~~~~~~~~~~~~~E~~il--~--~~~~hp~Iv~l~~---~f~~~~~lylVmE 76 (325) T cd05604 4 GKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVL--L--KNVKHPFLVGLHY---SFQTTEKLYFVLD 76 (325) T ss_pred EECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHH--H--HHCCCCCCCEEEE---EEEECCEEEEEEE T ss_conf 1288949999998899989999998167835989999999999999--9--8789998893999---9998999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 77 y~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~y~~qi~~aL~yLH~------- 114 (325) T cd05604 77 FVNGGELF--------------FHLQRE-RSFP--------EPRAR------------FYAAEIASALGYLHS------- 114 (325) T ss_pred CCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 88898899--------------998745-8999--------99999------------999999999999987------- Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 74440223464225627-96048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) .++||.|+.|.|||++. +.+. +.||+.|.. T Consensus 115 ~~IiHRDLKPeNILl~~~g~ik-L~DFGlak~ 145 (325) T cd05604 115 INIVYRDLKPENILLDSQGHVV-LTDFGLCKE 145 (325) T ss_pred CCCEECCCCCCCCCCCCCCCEE-EEECCHHHC T ss_conf 8914302275442426899789-743231010 No 244 >cd05607 STKc_GRK7 STKc_GRK7: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation Probab=97.09 E-value=0.0092 Score=37.49 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=65.9 Q ss_pred CCEEEEEEEEEC-CC-CEEEEEECCC-CCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 812001799943-99-5899982166-998----8999999999998532677555100102677875224515578647 Q gi|254780795|r 33 GVENSNFVIQTS-KG-TFILTIYEKR-MNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFI 105 (316) Q Consensus 33 G~~Ntny~v~t~-~~-~yiLri~e~~-~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i 105 (316) |.--+.|.+... +| .|.+|+..+. ... .....+.++|..+.. |.++.-.. ..+-++..+.+++|+ T Consensus 4 G~fg~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----p~iv~l~~---~~~~~~~~~lvmE~~ 75 (277) T cd05607 4 GGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNS-----PFIVNLAY---AFESKTHLCLVMSLM 75 (277) T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHHHHCCC-----CCCCCEEE---EEEECCEEEEEEEEC T ss_conf 8456999999989998999999817891445789999999999986799-----98991878---998799899999805 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 88707689989999999986436753068754332311245645766752001552278899999998887652107774 Q gi|254780795|r 106 KGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316) Q Consensus 106 ~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316) +|..+.. .+...| ..+++ ..... .....+...+..+.+ .| T Consensus 76 ~ggdL~~----~i~~~~---------~~~~~--------~~~~~------------~~~~qi~~al~ylH~-------~~ 115 (277) T cd05607 76 NGGDLKY----HIYNVG---------ERGLE--------MERVI------------HYSAQITCGILHLHS-------MD 115 (277) T ss_pred CCCCHHH----HHHHCC---------CCCCC--------HHHHH------------HHHHHHHHHHHHHHH-------CC T ss_conf 8980899----998537---------78999--------99999------------999999999999986-------89 Q ss_pred EEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 440223464225627-9604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +||.|+.|.|||+++ +++ -+.||+.|. T Consensus 116 IiHRDlKPeNILl~~~g~~-Kl~DFGla~ 143 (277) T cd05607 116 IVYRDMKPENVLLDDQGNC-RLSDLGLAV 143 (277) T ss_pred CCCCCCCHHHCCCCCCCCE-EEEECCEEE T ss_conf 5525477787130578977-984557026 No 245 >smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. Probab=97.08 E-value=0.015 Score=36.08 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=70.7 Q ss_pred CCCCCEEEEEEEEECC-----C-CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 4668120017999439-----9-58999821669988---9999999999985326775551001026778752245155 Q gi|254780795|r 30 IIHGVENSNFVIQTSK-----G-TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 30 i~~G~~Ntny~v~t~~-----~-~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) |..|.--+.|+-.... + ...+|+........ ++..|+++|..|.. |.+++-.+ ....++..+. T Consensus 7 lG~G~fg~Vy~a~~~~~~~~~~~~VAvK~i~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~g---~~~~~~~~~l 78 (258) T smart00219 7 LGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDH-----PNIVKLLG---VCTEEEPLMI 78 (258) T ss_pred EECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEEECCEEEE T ss_conf 722888599999995898855779999998855798999999999999986799-----98853868---9977998899 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++.. .+ .. .++ ... .+.... .....+...+..+.+ T Consensus 79 vmE~~~~G~L~~-----------~l---~~-~~~------~~l---~~~~~~---------~i~~qi~~gl~yLH~---- 121 (258) T smart00219 79 VMEYMEGGDLLD-----------YL---RK-NRP------KEL---SLSDLL---------SFALQIARGMEYLES---- 121 (258) T ss_pred EEECCCCCCHHH-----------HH---HH-CCC------CCC---CHHHHH---------HHHHHHHHHHHHHHH---- T ss_conf 996688991999-----------99---75-589------999---999999---------999999999999986---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.|.|||++++...-|.||+-|. T Consensus 122 ---~~ivHrDiKp~NILl~~~~~~Kl~DFGla~ 151 (258) T smart00219 122 ---KNFIHRDLAARNCLVGENLVVKISDFGLSR 151 (258) T ss_pred ---CCEECCCCCHHHEEECCCCCEEEEECCCCE T ss_conf ---998506175883788899959999778866 No 246 >cd06652 STKc_MEKK2 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays r Probab=97.05 E-value=0.0064 Score=38.52 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=70.3 Q ss_pred HCCCCCEEEEEECCCCCEEEEEEEEE-CCC-CEEEEEECCC----CCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHH Q ss_conf 48998605310046681200179994-399-5899982166----9988---9999999999985326775551001026 Q gi|254780795|r 18 EYAIGQLNSVQPIIHGVENSNFVIQT-SKG-TFILTIYEKR----MNEK---DLPVFIELLHYISRNKLPCPIPIPRNDG 88 (316) Q Consensus 18 ~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~----~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G 88 (316) +|.+++.. ..|.--+.|++.. +.| .+.+|+.... .... .+..|+.+|..|.. |.+++-. | T Consensus 3 ~Y~l~~~l-----G~G~fg~Vy~a~~~~tg~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~~l~~l~H-----pnIv~~~-~ 71 (265) T cd06652 3 NWRLGKLL-----GQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLH-----ERIVQYY-G 71 (265) T ss_pred CCEEEEEE-----ECCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E T ss_conf 87883698-----31888399999988999799999993163555679999999999999984799-----8873188-9 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 77875224515578647887076899899999999864367530687543323112456457667520015522788999 Q gi|254780795|r 89 KLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEID 168 (316) Q Consensus 89 ~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (316) -.....++..+.+++|++|.++.. .+ .. ...++ .... ......+. T Consensus 72 ~~~~~~~~~~~ivmEy~~gg~L~~-----------~l---~~-~~~l~--------e~~~------------~~~~~qi~ 116 (265) T cd06652 72 CLRDPMERTLSIFMEHMPGGSIKD-----------QL---KS-YGALT--------ENVT------------RKYTRQIL 116 (265) T ss_pred EEECCCCCEEEEEEEECCCCCHHH-----------HH---HH-CCCCC--------HHHH------------HHHHHHHH T ss_conf 998089988999997019298899-----------99---87-49999--------9999------------99999999 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 999988876521077744402234642256279604873162135 Q gi|254780795|r 169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+..+.+ +++||.|+.|.|||++.+...-+.||+.|. T Consensus 117 ~al~ylH~-------~~IiHRDiKp~NIL~~~~g~vKl~DFGla~ 154 (265) T cd06652 117 EGVSYLHS-------NMIVHRDIKGANILRDSVGNVKLGDFGASK 154 (265) T ss_pred HHHHHHHH-------CCEEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf 99999997-------998535487898648899999996277541 No 247 >cd05628 STKc_NDR1 STKc_NDR1: Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient o Probab=97.04 E-value=0.029 Score=34.28 Aligned_cols=135 Identities=18% Similarity=0.203 Sum_probs=69.2 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166--99889---99999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++-|..|.--+.|++.-. .| .|.+|+..+. ..... +..+.++|.++. .|.+++-.. ..+-.+..+ T Consensus 6 ik~iG~G~fG~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----~~~iv~l~~---~f~~~~~ly 77 (363) T cd05628 6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEAD-----SLWVVKMFY---SFQDKLNLY 77 (363) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEE T ss_conf 358212868499999989999899999981678158999999999999998689-----997765989---999899899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+|+|++|..+. ..+ .+. ..+ ...... .....+...+..+. T Consensus 78 lvmEy~~GGdL~-----------~~l---~~~-~~l--------~e~~~~------------~~~~qi~~aL~~lH---- 118 (363) T cd05628 78 LIMEFLPGGDMM-----------TLL---MKK-DTL--------TEEETQ------------FYIAETVLAIDSIH---- 118 (363) T ss_pred EEEECCCCCCHH-----------HHH---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHH---- T ss_conf 999555897289-----------988---726-998--------999999------------99999999999997---- Q ss_pred HCCCCCEEECCCCCCCEEECC-CCCEEEECCCCC Q ss_conf 107774440223464225627-960487316213 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316) ..|+||.|+.|.|||++. +.+ -+.||+.| T Consensus 119 ---~~gIiHRDLKPeNILld~~g~i-KL~DFGla 148 (363) T cd05628 119 ---QLGFIHRDIKPDNLLLDSKGHV-KLSDFGLC 148 (363) T ss_pred ---HCCEEECCCCCCEEEECCCCCE-EECCCCCC T ss_conf ---4878951256661788899988-97647765 No 248 >cd07842 STKc_CDK8_like The catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with Probab=97.04 E-value=0.0092 Score=37.48 Aligned_cols=141 Identities=15% Similarity=0.201 Sum_probs=69.1 Q ss_pred EECCCCCEEEEEEEE---ECCC-CEEEEEECCCCC-HH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 004668120017999---4399-589998216699-88----99999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQ---TSKG-TFILTIYEKRMN-EK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~---t~~~-~yiLri~e~~~~-~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +.|..|.--+.|++. +..+ .|.+|+...... .. ..-.|+.+|..|.. |.+++..+ .....-.+.. T Consensus 6 ~~lG~G~fg~V~~~~~~~~~~~~~~AiK~i~~~~~~~~~~~~~~~~Ei~il~~l~h-----pnIv~l~~-~~~~~~~~~~ 79 (315) T cd07842 6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH-----ENVVSLVE-VFLEHADKSV 79 (315) T ss_pred EEEECCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-----CCCCCEEE-EEEECCCCEE T ss_conf 49832568198999984689994999999842101004668999999999986699-----88641778-9970898789 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|.- +..+ +.|........ .... . ......+...+..+.+ T Consensus 80 ~lv~E~~~~~l------------~~~i-~~~~~~~~~~~------~~~~----i--------~~i~~Qll~aL~yLH~-- 126 (315) T cd07842 80 YLLFDYAEHDL------------WQII-KFHRQAKRVSI------PPSM----V--------KSLLWQILNGVHYLHS-- 126 (315) T ss_pred EEEEECCCCCH------------HHHH-HHHHHHCCCCC------CHHH----H--------HHHHHHHHHHHHHHHH-- T ss_conf 99991379987------------9999-98666227889------9999----9--------9999999999999998-- Q ss_pred HHCCCCCEEECCCCCCCEEECC-----CCCEEEECCCCCC Q ss_conf 2107774440223464225627-----9604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYN-----NKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~-----~~i~giIDF~~~~ 213 (316) .++||.|+.|.|||+.+ +.+. |+||+.|. T Consensus 127 -----~~IiHrDlKPeNILl~~~~~~~~~iK-l~DFG~a~ 160 (315) T cd07842 127 -----NWVLHRDLKPANILVMGEGPERGVVK-IGDLGLAR 160 (315) T ss_pred -----CCEEECCCCCCCEEEECCCCCCCCEE-ECCCCEEE T ss_conf -----89163337610079832567778788-66873036 No 249 >cd05619 STKc_nPKC_theta STKc_nPKC_theta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other Probab=97.03 E-value=0.01 Score=37.23 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=67.1 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 466812001799943-99-58999821669--988999---999999998532677555100102677875224515578 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) |..|.--+.|++... .| .|.+|+..+.. ...++. .+..+|.. .+.-|.+++-.. ..+-++..+.++ T Consensus 3 IG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~----~~~Hp~Iv~l~~---~f~~~~~lylvm 75 (316) T cd05619 3 LGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSL----AWEHPFLTHLYC---TFQTKENLFFVM 75 (316) T ss_pred EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHH----HCCCCCCCEEEE---EEEECCEEEEEE T ss_conf 4328895999999999998999999817873371589999999999997----379998885999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+.. .+.+.+ .++ ..... .....+...+..+.+ T Consensus 76 Ey~~gGdL~~-----------~l~~~~----~~~--------~~~a~------------~~~~qi~~aL~ylH~------ 114 (316) T cd05619 76 EYLNGGDLMF-----------HIQSCH----KFD--------LPRAT------------FYAAEIICGLQFLHS------ 114 (316) T ss_pred ECCCCCCHHH-----------HHHHCC----CCC--------HHHHH------------HHHHHHHHHHHHHHH------ T ss_conf 7569987888-----------786438----999--------99999------------999999999999987------ Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 115 -~~IiHRDlKpeNILl~~~g~iKL~DFGlak 144 (316) T cd05619 115 -KGIVYRDLKLDNILLDTDGHIKIADFGMCK 144 (316) T ss_pred -CCEEECCCCCCCCCCCCCCCEEEECCCHHH T ss_conf -894744347656552579977873112566 No 250 >cd07837 STKc_CdkB_plant The catalytic domain of the Serine/Threonine Kinase, Plant Cyclin-Dependent protein Kinase CdkB subfamily. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrat Probab=97.02 E-value=0.0079 Score=37.91 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=69.1 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC--C Q ss_conf 10046681200179994-399-5899982166998----89999999999985326775551001026778752245--1 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKRMNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK--P 98 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k--~ 98 (316) ++.|..|.--+.|.+.. .+| .+.+|......+. ...-.|+.+|+.|+.+.. +...+.. .......++ . T Consensus 6 ~~~lG~G~fg~V~~a~~~~t~~~vAiK~~~~~~~~~~~~~~~~rEi~il~~l~~~~~-i~~~~~~---~~~~~~~~~~~~ 81 (295) T cd07837 6 LEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIY-IVRLLDV---EHVEEKNGKPSL 81 (295) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEE---EEECCCCCCEEE T ss_conf 269832618599999999999899999970352023448999999999986147997-8988645---751267895589 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|.- . +. +- .+.. . . ......... ......+...+..+.+ T Consensus 82 ~iv~E~~~~~l------~---~~---~~-~~~~--~-~---~~~l~e~~~------------~~~~~ql~~al~~lH~-- 128 (295) T cd07837 82 YLVFEYLDSDL------K---KF---MD-SNGR--G-P---GRPLPAKTI------------KSFMYQLLKGVAHCHK-- 128 (295) T ss_pred EEEEECCCCCH------H---HH---HH-HHCC--C-C---CCCCCHHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 99995489867------9---99---99-8354--5-7---888899999------------9999999999999998-- Q ss_pred HHCCCCCEEECCCCCCCEEECCC--CCEEEECCCCCC Q ss_conf 21077744402234642256279--604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNN--KIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~--~i~giIDF~~~~ 213 (316) .|+||.|+.|+|||++++ .+. |+||+.|. T Consensus 129 -----~~IiHRDlKPeNILi~~~~~~iK-l~DFGls~ 159 (295) T cd07837 129 -----HGVMHRDLKPQNLLVDKQKGLLK-IADLGLGR 159 (295) T ss_pred -----CCCEECCCCHHHEEECCCCCEEE-EECCCCHH T ss_conf -----88667427766624627898799-93257233 No 251 >cd05073 PTKc_Hck Catalytic Domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa Probab=97.02 E-value=0.026 Score=34.53 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=75.6 Q ss_pred EEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 10046681200179994399-5899982166-998899999999999853267755510010267787522451557864 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .+.|..|.--+.|+..-+++ +..+|..... .+.+.+-.|+.+|..|+. |.+++- .|- ..++..+.+++| T Consensus 11 ~~~iG~G~fG~Vy~~~~~~~~~VAvK~l~~~~~~~~~f~~E~~~l~~l~H-----pniv~~-~~~---~~~~~~~lv~Ey 81 (260) T cd05073 11 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQH-----DKLVKL-HAV---VTKEPIYIITEF 81 (260) T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEE-EEE---EECCCEEEEEEE T ss_conf 23994178869999998999999999985676789999999999986899-----888649-999---946953999991 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++. ..| +.. .+ .... +.... .....+...+..+.+ + T Consensus 82 ~~~GsL~-----------~~l---~~~-~~------~~~~---~~~~~---------~~~~qia~gl~yLH~-------~ 121 (260) T cd05073 82 MAKGSLL-----------DFL---KSD-EG------SKQP---LPKLI---------DFSAQIAEGMAFIEQ-------R 121 (260) T ss_pred CCCCCHH-----------HHH---HHC-CC------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------C T ss_conf 6998999-----------998---636-67------7789---99999---------999999999999986-------9 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++||+|+.+.|||++.+...-|.||+.+. T Consensus 122 ~iiHrDlKp~NiLl~~~~~~Kl~DFGls~ 150 (260) T cd05073 122 NYIHRDLRAANILVSASLVCKIADFGLAR 150 (260) T ss_pred CCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 92667677200788699878998568865 No 252 >cd05631 STKc_GRK4 STKc_GRK4: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as Probab=97.02 E-value=0.019 Score=35.52 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=70.9 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166-9988----999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++-|..|.--+.|++... +| .|.+|+.++. .... ..-.++++|..+....+ +.-. ...+..+..+ T Consensus 5 ~k~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~i-----v~l~---~~~~~~~~~~ 76 (285) T cd05631 5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFV-----VSLA---YAYETKDALC 76 (285) T ss_pred EEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEE T ss_conf 5895038182999999989997999999837881025789999999999987699888-----8599---9999799999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 578647887076899899999999864367530-6875433231124564576675200155227889999999888765 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) .++++++|..+. ..+ +... .+++ ..... .....+...++.+.+ T Consensus 77 lv~e~~~gg~L~----~~i----------~~~~~~~~~--------e~~~~------------~~~~qi~~al~ylH~-- 120 (285) T cd05631 77 LVLTIMNGGDLK----FHI----------YNMGNPGFD--------EQRAI------------FYAAELCCGLEDLQR-- 120 (285) T ss_pred EEEEECCCCCHH----HHH----------HHCCCCCCC--------HHHHH------------HHHHHHHHHHHHHHH-- T ss_conf 999965798589----999----------863899999--------99999------------999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 2107774440223464225627-9604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|.|||+++ +.+ -|+||+.|. T Consensus 121 -----~~IiHRDlKPeNILl~~~~~i-Kl~DFGla~ 150 (285) T cd05631 121 -----ERIVYRDLKPENILLDDRGHI-RISDLGLAV 150 (285) T ss_pred -----CCCCCCCCCCCCCCCCCCCCE-EEEECCCEE T ss_conf -----797577668656565789968-997658458 No 253 >cd05616 STKc_cPKC_beta STKc_cPKC_beta: Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicin Probab=96.99 E-value=0.0084 Score=37.74 Aligned_cols=136 Identities=19% Similarity=0.248 Sum_probs=68.6 Q ss_pred EECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 004668120017999439-9-5899982166--9988999---9999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|++.-.. | .|.+|+..+. ....++. .+.++|....++ |.++.-.+ ..+-.++.+. T Consensus 6 k~LG~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~~----p~Iv~l~~---~f~~~~~lyl 78 (323) T cd05616 6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKP----PFLTQLHS---CFQTMDRLYF 78 (323) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CEEEEEEE---EEEECCEEEE T ss_conf 7952276809999999999989999998278843847899999999999971799----92859999---9998999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 79 VmEy~~gGdL~--------------~~l~~~-~~l~--------e~~~~------------~~~~qi~~aL~yLH~---- 119 (323) T cd05616 79 VMEYVNGGDLM--------------YQIQQV-GRFK--------EPHAV------------FYAAEIAIGLFFLHS---- 119 (323) T ss_pred EEECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 99588998089--------------999981-9999--------89999------------999999999999987---- Q ss_pred CCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 077744402234642256279-604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+ .+. ++||+.|. T Consensus 120 ---~~IiHRDLKPeNILl~~~g~iK-L~DFGlak 149 (323) T cd05616 120 ---KGIIYRDLKLDNVMLDSEGHIK-IADFGMCK 149 (323) T ss_pred ---CCCCCCCCCCCCEEECCCCCEE-EEEHHHHH T ss_conf ---7975025477661476899778-85321544 No 254 >cd05602 STKc_SGK1 STKc_SGK1: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is as Probab=96.99 E-value=0.01 Score=37.13 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=66.6 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-58999821669--9889---999999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... ++ .|.+|+..+.. ...+ +-.+.+.+ + +.+.-|.+++-.. ..+-.++.+.+++ T Consensus 4 G~G~fG~V~la~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il--l--~~l~hp~Iv~l~~---~f~~~~~lylvmE 76 (325) T cd05602 4 GKGSFGKVLLARHKSDEKFYAVKVLQKKAILKKKEEKHIMSERNVL--L--KNVKHPFLVGLHF---SFQTTDKLYFVLD 76 (325) T ss_pred EECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHH--H--HHCCCCCCCEEEE---EEEECCEEEEEEE T ss_conf 3184959999998899979999998378803768999999999999--9--8689998895999---9998999999995 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+. ..+. .... ......+...+..+.+ T Consensus 77 y~~gGdL~--------------~~l~~~-~~~~--------e~~a------------~~~~~qi~~aL~yLH~------- 114 (325) T cd05602 77 YINGGELF--------------YHLQRE-RCFL--------EPRA------------RFYAAEIASALGYLHS------- 114 (325) T ss_pred CCCCCCHH--------------HHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 78998689--------------999753-8999--------9999------------9999999999999998------- Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 74440223464225627-9604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++. +.+. ++||+.|. T Consensus 115 ~~IiHRDLKPeNILld~~g~ik-L~DFGlak 144 (325) T cd05602 115 LNIVYRDLKPENILLDSQGHIV-LTDFGLCK 144 (325) T ss_pred CCCEECCCCCCCCCCCCCCCEE-EEECHHHH T ss_conf 7965323576465637899888-71033556 No 255 >cd05590 STKc_nPKC_eta STKc_nPKC_eta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro Probab=96.99 E-value=0.02 Score=35.37 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=66.6 Q ss_pred CCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-99-58999821669--988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... +| .|.+|+..+.. ...++. .+.++|..+.. -|.+++-.+ ..+-.++.+.+++ T Consensus 4 G~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~----hp~Iv~l~~---~f~~~~~~ylvmE 76 (320) T cd05590 4 GKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARN----HPFLTQLYC---CFQTPDRLFFVME 76 (320) T ss_pred EECCCCEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEE---EEEECCEEEEEEE T ss_conf 118791999999999998999999807884384789999999999997279----997866999---9998999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+.+ ...++ .... ......+...+..+.+ T Consensus 77 y~~gGdL~--------------~~l~~-~~~l~--------e~~a------------~~~~~qi~~aL~yLH~------- 114 (320) T cd05590 77 FVNGGDLM--------------FHIQK-SRRFD--------EARA------------RFYAAEITSALMFLHD------- 114 (320) T ss_pred CCCCCCHH--------------HHHHH-CCCCC--------HHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 67998799--------------99974-38999--------9999------------9999999999999987------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+...-++||+.|. T Consensus 115 ~gIiHRDLKPeNILl~~~g~iKL~DFGlak 144 (320) T cd05590 115 KGIIYRDLKLDNVLLDHEGHCKLADFGMCK 144 (320) T ss_pred CCEEECCCCCCCCEECCCCCEEECCHHHHH T ss_conf 890762246753457468988970413534 No 256 >cd05632 STKc_GRK5 STKc_GRK5: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids Probab=96.99 E-value=0.016 Score=35.92 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=71.6 Q ss_pred EEECCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 10046681200179994-399-5899982166-998----8999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT-SKG-TFILTIYEKR-MNE----KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~----~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++.|..|.--+.|++.. .+| .|.+|+..+. ... ...-.++++|..+....+ +.-. ...+-.+..+ T Consensus 5 ~k~LG~G~fg~V~~~~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~---~~~~~~~~~~ 76 (285) T cd05632 5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFV-----VSLA---YAYETKDALC 76 (285) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEE T ss_conf 2896028290999999999997999999817880135779999999999987699888-----8498---9999799899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 578647887076899899999999864367530-6875433231124564576675200155227889999999888765 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) .++++++|..+. .. ++... .+++ .... ......+...++.+.+ T Consensus 77 lv~E~~~gg~L~----~~----------i~~~~~~~~~--------e~~~------------~~~~~qi~~aL~ylH~-- 120 (285) T cd05632 77 LVLTIMNGGDLK----FH----------IYNMGNPGFE--------EERV------------LFYAAEICCGLEDLHR-- 120 (285) T ss_pred EEEEECCCCCHH----HH----------HHHCCCCCCC--------HHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 999963798489----99----------9962899999--------9999------------9999999999999988-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-++||+.|. T Consensus 121 -----~~IiHRDlKPeNILl~~~g~iKl~DFGla~ 150 (285) T cd05632 121 -----ENIVYRDLKPENILLDDYGHIRISDLGLAI 150 (285) T ss_pred -----CCCCCCCCCHHHHCCCCCCEEEEEECCCEE T ss_conf -----887516788666053479818996557427 No 257 >cd07859 STKc_TDY_MAPK_plant The catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved Probab=96.99 E-value=0.018 Score=35.56 Aligned_cols=139 Identities=13% Similarity=0.185 Sum_probs=67.0 Q ss_pred EECCCCCEEEEEEEE-ECCCC-EEEEEECCC----CCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCEE Q ss_conf 004668120017999-43995-899982166----9988999999999998532677-5551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQ-TSKGT-FILTIYEKR----MNEKDLPVFIELLHYISRNKLP-CPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~-t~~~~-yiLri~e~~----~~~~~l~~~~~ll~~L~~~gip-vP~pi~~~~G~~~~~~~~k~~~ 100 (316) +-|..|.--+.|... ..+|+ +.+|+..+. .....+-.|+.+|..|..-++. +-......+... .+..+. T Consensus 6 ~~IG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~----~~~~yi 81 (338) T cd07859 6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRRE----FKDIYV 81 (338) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC----CCEEEE T ss_conf 5974272849999998899989999998812308578999999999998679959884889995178665----665899 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) ++++++|.- .+ .+. ....++ ..... .....+...+..+.+ T Consensus 82 v~e~~~~~L---------~~---~i~----~~~~l~--------~~~~~------------~~~~Qil~aL~ylH~---- 121 (338) T cd07859 82 VFELMESDL---------HQ---VIK----ANDDLT--------PEHHQ------------FFLYQLLRALKYIHT---- 121 (338) T ss_pred EEEECCCCH---------HH---HHH----HCCCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 997059847---------88---876----269999--------99999------------999999999999978---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-|+||+.|. T Consensus 122 ---~~IiHRDLKPeNIL~~~~~~vKl~DFGlar 151 (338) T cd07859 122 ---ANVFHRDLKPKNILANADCKLKICDFGLAR 151 (338) T ss_pred ---CCCEEECCCHHEEEECCCCCEEECCCCEEE T ss_conf ---788430054310788689976521355135 No 258 >cd05046 PTK_CCK4 Catalytic Domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon carcinoma kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is stil Probab=96.98 E-value=0.033 Score=33.93 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=74.2 Q ss_pred CEEEEEECCCCCEEEEEEEEECC------CC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 60531004668120017999439------95-8999821669988---99999999999853267755510010267787 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTSK------GT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~~------~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316) .+..++.|..|.=-+.|+..... .+ ..+|......+.. ++..|+++|..|+. |.+++-. | +. T Consensus 6 ~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~H-----pnIV~l~-g--~~ 77 (275) T cd05046 6 NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSH-----KNVVRLL-G--LC 77 (275) T ss_pred HCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EE T ss_conf 99842498028885899999888865678589999983756786899999999999986899-----7999199-9--99 Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 52245155786478870768998999999998643675306875433231124564576675200155227889999999 Q gi|254780795|r 93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316) Q Consensus 93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316) ...+..+.+++|++|.++.. . |+.............+. +...+ .+...+...+. T Consensus 78 ~~~~~~~ivmEy~~~G~L~~-----------~---l~~~~~~~~~~~~~~l~---~~~~~---------~i~~qia~gl~ 131 (275) T cd05046 78 REAEPHYMILEYTDLGDLKQ-----------F---LRATKSKDEKLKPPPLS---TKQKV---------ALCTQIALGMD 131 (275) T ss_pred EECCEEEEEEECCCCCCHHH-----------H---HHHCCCCCCCCCCCCCC---HHHHH---------HHHHHHHHHHH T ss_conf 88994699995558984999-----------9---98624554334578889---99999---------99999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 88876521077744402234642256279604873162135 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+.+ .++||+|+.+.|||++.+...-|-||+.+. T Consensus 132 yLH~-------~~iiHrDLKp~NiLl~~~~~~Ki~DfGls~ 165 (275) T cd05046 132 HLSN-------ARFVHRDLAARNCLVSSQREVKVSLLSLSK 165 (275) T ss_pred HHHC-------CCCCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 9961-------993167545240898279967860021010 No 259 >cd05070 PTKc_Fyn_Yrk Catalytic Domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r Probab=96.98 E-value=0.033 Score=33.91 Aligned_cols=142 Identities=13% Similarity=0.178 Sum_probs=79.6 Q ss_pred CEEEEEECCCCCEEEEEEEEECC-CCEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 60531004668120017999439-95899982166-99889999999999985326775551001026778752245155 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTSK-GTFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~~-~~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) ++.-++.|..|.--+.|+-.... ++..+|.++.. ...+.+-.|+++|..|+..+| ++-. |- ...+..+. T Consensus 7 ~~~~~~~IG~G~fG~Vy~g~~~~~~~VAiK~l~~~~~~~~~f~~E~~il~~l~H~nI-----v~~~-g~---~~~~~~~l 77 (260) T cd05070 7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKL-----VQLY-AV---VSEEPIYI 77 (260) T ss_pred HEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-----CEEE-EE---EECCCEEE T ss_conf 989747982188858999999999999999988367997999999999986899898-----9499-99---93697599 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++.. .|+. ..+-. .. +... ..+...+...+..+.+ T Consensus 78 v~Ey~~~G~L~~--------------~l~~-~~~~~------~~---~~~~---------~~i~~qia~gL~yLH~---- 120 (260) T cd05070 78 VTEYMSKGSLLD--------------FLKD-GEGRA------LK---LPNL---------VDMAAQVAAGMAYIER---- 120 (260) T ss_pred EEECCCCCCHHH--------------HHHH-CCCCC------CC---HHHH---------HHHHHHHHHHHHHHHH---- T ss_conf 998179998999--------------9862-88887------99---9999---------9999999999999855---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++.+...-+.||+.|. T Consensus 121 ---~~iiHrDlKp~NiLl~~~~~~KL~DFGla~ 150 (260) T cd05070 121 ---MNYIHRDLRSANILVGDGLVCKIADFGLAR 150 (260) T ss_pred ---CCCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf ---892345046172888789978985658671 No 260 >cd05575 STKc_SGK STKc_SGK: Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Probab=96.97 E-value=0.014 Score=36.40 Aligned_cols=134 Identities=17% Similarity=0.269 Sum_probs=66.4 Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 466812001799943-99-58999821669--98899---9999999998532677555100102677875224515578 Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) |..|.--+.|++.-. +| .|.+|+..+.. ...+. ..+...| . +.+.-|.+++-.. ..+-.++.+.++ T Consensus 3 LG~G~fG~V~~a~~k~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il---~-~~l~Hp~Iv~l~~---~f~~~~~~ylvm 75 (323) T cd05575 3 IGKGSFGKVLLAKHKEDGKFYAVKVLQKKAILKKNEQKHIMAERNVL---L-KNVKHPFLVGLHY---SFQTKEKLYFVL 75 (323) T ss_pred EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHH---H-HHCCCCCCCEEEE---EEEECCEEEEEE T ss_conf 73284959999998899989999998278835878999999999999---9-8689998894999---999899999999 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) +|++|..+. ..+.+. ..++ ..... .....+...+..+.+ T Consensus 76 Ey~~gGdL~--------------~~l~~~-~~l~--------e~~a~------------~~~~qi~~aL~ylH~------ 114 (323) T cd05575 76 DYVNGGELF--------------FHLQRE-RSFP--------EPRAR------------FYAAEIASALGYLHS------ 114 (323) T ss_pred ECCCCCCHH--------------HHHHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------ T ss_conf 688998889--------------999874-9999--------99999------------999999999999998------ Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 774440223464225627-9604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +++||.|+.|+|||++. +.+. ++||+.|. T Consensus 115 -~~IiHRDLKPeNILl~~~g~ik-L~DFGlak 144 (323) T cd05575 115 -LNIIYRDLKPENILLDSKGHVV-LTDFGLCK 144 (323) T ss_pred -CCCCCCCCCCCCCCCCCCCCEE-EEECHHHH T ss_conf -7944356674333205899788-60201534 No 261 >cd05630 STKc_GRK6 STKc_GRK6: Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translatio Probab=96.94 E-value=0.025 Score=34.69 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=71.5 Q ss_pred EEECCCCCEEEEEEEEEC-CC-CEEEEEECCC-CCHH----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 100466812001799943-99-5899982166-9988----999999999998532677555100102677875224515 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KG-TFILTIYEKR-MNEK----DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~-~~~~----~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) ++-|..|.--+.|++... +| .|.+|+..+. .... ..-.|+.+|..+....+ ++-. ...+-++..+ T Consensus 5 ~k~lG~G~fG~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~---~~~~~~~~~~ 76 (285) T cd05630 5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFV-----VSLA---YAYETKDALC 76 (285) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE---EEEEECCEEE T ss_conf 0897027281999999989997999999837880235789999999999987699888-----9498---9998699899 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .++++++|..+.. .+...| ..+++ .... ......+...++.+.+ T Consensus 77 lv~e~~~ggdL~~----~i~~~~---------~~~~~--------e~~~------------~~~~~qi~~al~ylH~--- 120 (285) T cd05630 77 LVLTLMNGGDLKF----HIYHMG---------EAGFE--------EGRA------------VFYAAEICCGLEDLHQ--- 120 (285) T ss_pred EEEEECCCCCHHH----HHHHCC---------CCCCC--------HHHH------------HHHHHHHHHHHHHHHH--- T ss_conf 9999536991899----999718---------89999--------9999------------9999999999999987--- Q ss_pred HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 1077744402234642256279-604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++++ .+. ++||+.|. T Consensus 121 ----~~IiHRDlKPeNILl~~~g~vK-l~DFGla~ 150 (285) T cd05630 121 ----ERIVYRDLKPENILLDDHGHIR-ISDLGLAV 150 (285) T ss_pred ----CCCCCCCCCCCCEEECCCCCEE-EEECCCCE T ss_conf ----9865377773305356999789-98456226 No 262 >KOG0615 consensus Probab=96.94 E-value=0.0047 Score=39.40 Aligned_cols=31 Identities=35% Similarity=0.686 Sum_probs=25.1 Q ss_pred CCCEEECCCCCCCEEECCC---CCEEEECCCCCC Q ss_conf 7744402234642256279---604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNN---KIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~---~i~giIDF~~~~ 213 (316) .+|+||.|+.|+|||...+ -+.-|-||+.|- T Consensus 294 ~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK 327 (475) T KOG0615 294 SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAK 327 (475) T ss_pred HCCCCCCCCCCCEEEECCCCCCEEEEEECCCHHH T ss_conf 7585025677113775157742589850244222 No 263 >cd05579 STKc_MAST_like STKc_MAST_like: Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harb Probab=96.91 E-value=0.02 Score=35.33 Aligned_cols=133 Identities=21% Similarity=0.277 Sum_probs=70.1 Q ss_pred CCCCEEEEEEEEECC-C-CEEEEEECCC--CCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 668120017999439-9-5899982166--998---89999999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTSK-G-TFILTIYEKR--MNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++.-.. | .|.+|+.... ... +.+..|+.+|..|.. |.+++-.+ ..+-++..+.+++ T Consensus 2 G~G~fg~V~~~~~~~t~~~~AvK~i~~~~~~~~~~~~~~~~E~~~l~~l~h-----pnIv~~~~---~~~~~~~~~ivmE 73 (265) T cd05579 2 SKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERNILSQAQN-----PFVVKLYY---SFQGKKNLYLVME 73 (265) T ss_pred CCCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEEEEE T ss_conf 688190899999899998999999817886687899999999999997799-----99891999---9998998999984 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|.++.. .+ ++. ..++ ..... .....+...+..+.+ T Consensus 74 ~~~gg~L~~-----------~l---~~~-~~l~--------e~~~~------------~~~~qll~gl~~lH~------- 111 (265) T cd05579 74 YLPGGDLAS-----------LL---ENV-GSLD--------EDMAR------------IYIAEIVLALEYLHS------- 111 (265) T ss_pred CCCCCCHHH-----------HH---HHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 799990899-----------99---876-9999--------99999------------999999999999998------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++++...-++||+.|. T Consensus 112 ~~ivHRDIKpeNiLl~~~g~vKl~DFGls~ 141 (265) T cd05579 112 NGIIHRDLKPDNILIDSNGHLKLTDFGLSK 141 (265) T ss_pred CCCCCCCCCHHHEEECCCCCEEEEECCCCC T ss_conf 884526575333668799988981045684 No 264 >cd07877 STKc_p38alpha_MAPK14 The catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase subfamily. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also Probab=96.88 E-value=0.016 Score=35.90 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=68.3 Q ss_pred EEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHCCC Q ss_conf 5310046681200179994-3995-8999821669----9889999999999985326775551001-026778752245 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKRM----NEKDLPVFIELLHYISRNKLPCPIPIPR-NDGKLYGFLCKK 97 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~~----~~~~l~~~~~ll~~L~~~gipvP~pi~~-~~G~~~~~~~~k 97 (316) .-++.|..|.--+.|.... ..|+ +.+|+..+.. .......|+++|.+|...++. ..+-. ..+..+.. .+. T Consensus 20 ~i~~~IG~G~fG~Vy~a~d~~tg~~vAiK~i~~~~~~~~~~~~~~rEi~iL~~l~HpnIv--~l~d~f~~~~~~~~-~~~ 96 (345) T cd07877 20 QNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVI--GLLDVFTPARSLEE-FND 96 (345) T ss_pred EEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CEEEEEECCCCCCC-CCC T ss_conf 880297327084999999889998999999883000558899999999999866799933--26778831664344-770 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+++.++.|..+. . +.+. ..++ ..... .....+...+..+.+ T Consensus 97 -~~iv~~~~g~~L~--------~-------~~~~-~~l~--------e~~i~------------~i~~Qil~aL~ylH~- 138 (345) T cd07877 97 -VYLVTHLMGADLN--------N-------IVKC-QKLT--------DDHVQ------------FLIYQILRGLKYIHS- 138 (345) T ss_pred -EEEEEECCCCCHH--------H-------HHHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH- T ss_conf -8999927998899--------9-------9862-8999--------99999------------999999999999998- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 5210777444022346422562796048731621356 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +|+||.|+.|.|||++++...-|+||+.|+. T Consensus 139 ------~gIiHRDIKPeNILl~~~~~vKL~DFGlAr~ 169 (345) T cd07877 139 ------ADIIHRDLKPSNLAVNEDCELKILDFGLARH 169 (345) T ss_pred ------CCCEECCCCHHHEEECCCCCEEEEECCCCCC T ss_conf ------8845455774552456778779996367754 No 265 >cd05576 STKc_RPK118_like STKc_RPK118_like: Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 Probab=96.86 E-value=0.015 Score=36.11 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=62.5 Q ss_pred EEEEEEEC-CC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC Q ss_conf 01799943-99-58999821669988999999999998532677555100102677875224515578647887076899 Q gi|254780795|r 37 SNFVIQTS-KG-TFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHIS 114 (316) Q Consensus 37 tny~v~t~-~~-~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~ 114 (316) +.|++.-. .| .|.+|+.++.. ....+. .. +.+.. .|..++-.+ ..+-.+..+.+++|++|..+.. T Consensus 8 ~V~l~~~~~t~~~~AiK~i~k~~---~~~~e~--~~-l~~~~--~p~Iv~l~~---~~~~~~~~ylvmEy~~gg~L~~-- 74 (237) T cd05576 8 KVLLVMDTRTQQTFILKGLRKSS---EYSRER--LT-IIPHC--VPNMVCLHK---YIVSEDSVFLVLQHAEGGKLWS-- 74 (237) T ss_pred EEEEEEECCCCCEEEEEEECHHH---HHHHHH--HH-HHHCC--CCCCCEEEE---EEEECCEEEEEEECCCCCCHHH-- T ss_conf 89999987999999999981415---577999--99-99708--998676999---9998999999995779994899-- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC Q ss_conf 89999999986436753068754332311245645766752001552278899999998887652107774440223464 Q gi|254780795|r 115 DIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPD 194 (316) Q Consensus 115 ~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~ 194 (316) .+.+- ..++ ..... .....+...+..+.+ +|++|.|+.|+ T Consensus 75 ---------~i~~~----~~l~--------e~~~~------------~~~~qll~al~~lH~-------~~ivHrDiKPe 114 (237) T cd05576 75 ---------HISKF----LNIP--------EECVK------------RWAAEMVVALDALHR-------EGIVCRDLNPN 114 (237) T ss_pred ---------HHHHC----CCCC--------HHHHH------------HHHHHHHHHHHHHHH-------CCEEEEECCCC T ss_conf ---------99875----9999--------99999------------999999999999997-------89675115643 Q ss_pred CEEECCCCCEEEECCCCCC Q ss_conf 2256279604873162135 Q gi|254780795|r 195 NVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 195 NiL~~~~~i~giIDF~~~~ 213 (316) |+|++++...-+.||+.+. T Consensus 115 Nill~~~~~ikl~dfg~~~ 133 (237) T cd05576 115 NILLDDRGHIQLTYFSRWS 133 (237) T ss_pred EEEECCCCCEEEEECCCCH T ss_conf 1788799979997646514 No 266 >cd05596 STKc_ROCK STKc_ROCK: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesio Probab=96.86 E-value=0.0089 Score=37.59 Aligned_cols=140 Identities=13% Similarity=0.120 Sum_probs=72.6 Q ss_pred CCEEEEEECCCCCEEEEEEEEEC-CC-CEEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 86053100466812001799943-99-58999821669--988---9999999999985326775551001026778752 Q gi|254780795|r 22 GQLNSVQPIIHGVENSNFVIQTS-KG-TFILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 22 g~~~~~~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) .+..-++-|..|.--..|+++-. +| .|.+|+..+.. ... .+..|.++|..+.. |-+++-.. .++- T Consensus 43 dDFe~lk~lG~G~FG~V~lv~~k~tg~~yA~K~i~K~~~~~~~~~~~~~~E~~il~~~~h-----p~IV~l~~---~Fqd 114 (370) T cd05596 43 EDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANS-----EWIVQLHY---AFQD 114 (370) T ss_pred HHCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEE T ss_conf 885682268507284999999989998999999878996526789999999999986799-----98784899---9986 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) .+..+.+++|++|..+. ..+ .+ ..++ ..... -...++...+..+ T Consensus 115 ~~~lylVmEy~~GGdL~-----------~ll---~~--~~l~--------E~~a~------------~y~aqi~~aL~yL 158 (370) T cd05596 115 DKYLYMVMEYMPGGDLV-----------NLM---SN--YDIP--------EKWAR------------FYTAEVVLALDAI 158 (370) T ss_pred CCEEEEEEECCCCCCHH-----------HHH---HC--CCCC--------HHHHH------------HHHHHHHHHHHHH T ss_conf 99999999489997489-----------998---73--7989--------99999------------9999999999998 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 87652107774440223464225627960487316213 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) . ..|+||.|+.|.|+|++.+...-++||+.| T Consensus 159 H-------~~~iiHRDLKPeNiLld~~G~iKL~DFGla 189 (370) T cd05596 159 H-------SMGFIHRDVKPDNMLLDKSGHLKLADFGTC 189 (370) T ss_pred H-------CCCEEECCCCCCCCCCCCCCCEEECCHHHH T ss_conf 0-------086782257776531147886640352561 No 267 >cd05620 STKc_nPKC_delta STKc_nPKC_delta: Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhanc Probab=96.83 E-value=0.02 Score=35.34 Aligned_cols=133 Identities=21% Similarity=0.218 Sum_probs=65.4 Q ss_pred CCCCEEEEEEEEEC-CCC-EEEEEECCCC--CHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 66812001799943-995-8999821669--988999---9999999985326775551001026778752245155786 Q gi|254780795|r 31 IHGVENSNFVIQTS-KGT-FILTIYEKRM--NEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 31 ~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) ..|.--+.|++... +|+ |.+|+..+.. ...++. .+..+|... ..-|.+++-.. ...-.+..+.+++ T Consensus 4 G~G~fG~V~la~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~e~~il~~~----~~hp~Iv~l~~---~f~~~~~lylvmE 76 (316) T cd05620 4 GKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALA----WENPFLTHLYC---TFQTKEHLFFVME 76 (316) T ss_pred EECCCEEEEEEEECCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHH----CCCCCEEEEEE---EEEECCEEEEEEE T ss_conf 5287949999999999989999998366624605799999999999985----79996826999---9998999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|..+. ..+... + ........ .....+...++.+.+ T Consensus 77 y~~gGdL~--------------~~l~~~--~-------~~~e~~~~------------~~~~qi~~aL~yLH~------- 114 (316) T cd05620 77 FLNGGDLM--------------FHIQDK--G-------RFDLYRAT------------FYAAEIVCGLQFLHS------- 114 (316) T ss_pred CCCCCCHH--------------HHHHHC--C-------CCCHHHHH------------HHHHHHHHHHHHHHH------- T ss_conf 67998887--------------878744--9-------99999999------------999999999999997------- Q ss_pred CCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 744402234642256279-604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||++.+ .+. ++||+.|. T Consensus 115 ~~IiHRDlKPeNILl~~~g~iK-L~DFGlak 144 (316) T cd05620 115 KGIIYRDLKLDNVMLDRDGHIK-IADFGMCK 144 (316) T ss_pred CCCEECCCCCCCCCCCCCCCEE-EEECCEEH T ss_conf 8905230376555505899789-83214000 No 268 >PTZ00283 serine/threonine protein kinase; Provisional Probab=96.82 E-value=0.028 Score=34.34 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=69.0 Q ss_pred CCCCCEEEEEEEEE-CCC-CEEEEEECCC-CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC------CC Q ss_conf 46681200179994-399-5899982166-99889---9999999999853267755510010267787522------45 Q gi|254780795|r 30 IIHGVENSNFVIQT-SKG-TFILTIYEKR-MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC------KK 97 (316) Q Consensus 30 i~~G~~Ntny~v~t-~~~-~yiLri~e~~-~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~------~k 97 (316) |..|.--+.|+++- .+| .|.+|+.... .+..+ +..|+.+|..+. -|.+++-.+. ...... .. T Consensus 40 IGrGsFGkVyLar~k~tG~lvAvK~I~l~~ms~kd~~~a~~EV~iL~~l~-----HpnIVkl~e~-Fv~~d~~~~e~~~~ 113 (496) T PTZ00283 40 LGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCD-----FFSIVKCHED-FAKKDPRNPENVLM 113 (496) T ss_pred EEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEHH-HCCCCCCCCCCCCE T ss_conf 98289879999999799978999998403378688999999999997289-----9875455553-21057555556547 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530---687543323112456457667520015522788999999988 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT---KNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~---~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) .+.+++|++|..+. ..+.+.. +.|+. .... .....+...+..+ T Consensus 114 LyIVMEY~~GGdL~--------------~~I~~r~k~~~~f~E--------~~a~------------~~~~Qi~~al~yl 159 (496) T PTZ00283 114 IALVLDYANAGDLR--------------QEIKSRAKTNRTFRE--------HEAG------------LLFIQVLLAVHHV 159 (496) T ss_pred EEEEEECCCCCCHH--------------HHHHHHHHCCCCCCH--------HHHH------------HHHHHHHHHHHHH T ss_conf 99999258998579--------------999986542788789--------9999------------9999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 876521077744402234642256279604873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+ +++||.|+.+.|||+..+...-+.||+.|- T Consensus 160 H~-------~~iiHRDlK~~Nill~~~g~vKl~DFG~sk 191 (496) T PTZ00283 160 HS-------KHMIHRDIKSANILLCSNGLVKLGDFGFSK 191 (496) T ss_pred HH-------CCCCCCCCCHHHEEECCCCCEEECCCCCCH T ss_conf 97-------892414477766788689988987565202 No 269 >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th Probab=96.79 E-value=0.046 Score=32.95 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=73.8 Q ss_pred EEEEEECCCCCEEEEEEEE-----ECCCCE-EEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 0531004668120017999-----439958-9998216699--8899999999999853267755510010267787522 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQ-----TSKGTF-ILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~-----t~~~~y-iLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316) +.-++.|..|.--+.|+.. .++|+. .+|..+.... ..++..|+.+|..|... .+++-. |-.+..-. T Consensus 6 ~~~~~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~~~~~~~~~~Ei~il~~l~Hp-----NIv~~~-g~~~~~~~ 79 (284) T cd05081 6 LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHD-----NIVKYK-GVCYSAGR 79 (284) T ss_pred CEEEEEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----CEEEEE-EEEECCCC T ss_conf 299999714738599987982505788819999998877868899999999999976899-----882588-89972899 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888 Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316) ...+.+++|++|.++.. -|++.. +........ .....+..-+..+. T Consensus 80 ~~~~lV~Ey~~~GsL~~--------------~L~~~~--------~~~~~~~~~------------~~~~~ia~gl~yLH 125 (284) T cd05081 80 RNLRLVMEYLPYGSLRD--------------YLQKHR--------ERLDHRKLL------------LYASQICKGMEYLG 125 (284) T ss_pred CEEEEEEECCCCCCHHH--------------HHHHCC--------CCCCHHHHH------------HHHHHHHHHHHHHH T ss_conf 67999996489899899--------------997478--------889999999------------99999999999883 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 765210777444022346422562796048731621356 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) + +++||+|+.+.|||++++...-|-||+.|.. T Consensus 126 ~-------~~iiHrDlK~~NILld~~~~~Kl~DFGla~~ 157 (284) T cd05081 126 S-------KRYVHRDLATRNILVESENRVKIGDFGLTKV 157 (284) T ss_pred H-------CCCCCCCCCHHEEEECCCCCEEEECCCCCEE T ss_conf 3-------8914166764207988999589903675226 No 270 >cd05067 PTKc_Lck_Blk Catalytic Domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr Probab=96.78 E-value=0.048 Score=32.87 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=76.9 Q ss_pred EEEEEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 05310046681200179994399-5899982166-998899999999999853267755510010267787522451557 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.-++.|..|.--+.|+....++ +..+|..... ...+.+-.|+++|..|+..+ +++-. |- ..++..+.+ T Consensus 8 ~~~~~~iG~G~fg~Vy~~~~~~~~~VAvK~l~~~~~~~~~f~~E~~il~~l~Hpn-----IV~~~-g~---~~~~~~~lv 78 (260) T cd05067 8 LKLVKKLGAGQFGEVWMGYYNNHTKVAIKSLKEGTMSPEAFLAEANLMKQLQHER-----LVRLY-AV---VTQEPIYIV 78 (260) T ss_pred EEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-----CCCEE-EE---EECCCEEEE T ss_conf 7973598318785999999889989999998967899999999999998689978-----98199-99---956963999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|..+.. .| +. ..+.+ .. +... -.....+...+..+.+ T Consensus 79 ~Ey~~~G~L~~-----------~l---~~-~~~~~------l~---~~~~---------~~i~~qia~gl~yLH~----- 120 (260) T cd05067 79 TEYMENGSLVD-----------FL---KT-PEGIK------LT---INKL---------IDMAAQIAEGMAYIER----- 120 (260) T ss_pred EEECCCCCHHH-----------HH---HH-CCCCC------CC---HHHH---------HHHHHHHHHHHHHHHH----- T ss_conf 99069988999-----------98---30-67899------99---9999---------9999999999999974----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|-||+.|. T Consensus 121 --~~ivHrDlKp~NILl~~~~~~Kl~DFGls~ 150 (260) T cd05067 121 --KNYIHRDLRAANILVSETLCCKIADFGLAR 150 (260) T ss_pred --CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf --897605466211898699988971035506 No 271 >PRK12274 serine/threonine protein kinase; Provisional Probab=96.75 E-value=0.011 Score=36.91 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=47.9 Q ss_pred CCEEECCC-CCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCCHHHHH Q ss_conf 74440223-4642256279604873162135680001989999864311688878788999998876418--89989999 Q gi|254780795|r 184 TGIIHADL-FPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVR--KISENELQ 260 (316) Q Consensus 184 ~g~IHgDl-~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vr--pLs~~E~~ 260 (316) .|++|||+ +++|+|+..|.-..+|||.-|....+---+--.+ |. +-...+++.-..-. |||+.|.+ T Consensus 90 ~Gv~H~DLak~~N~L~~~dg~p~liDFQlA~~~~rr~~~~Ril---a~--------eDlrhllK~kr~y~~e~Ltp~e~~ 158 (198) T PRK12274 90 CGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLL---AR--------EDLRHLLKHKRMYCPAALTPVERR 158 (198) T ss_pred CCCCCCHHCCCCCEEECCCCCEEEEEEEECCCCCCHHHHHHHH---HH--------HHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 3774420205558888799997889744100236303899999---99--------989999998886389889989999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780795|r 261 SLPTLLRGAALRFFLTR 277 (316) Q Consensus 261 ~l~~ll~~aalRf~lsr 277 (316) .|--.-..+ |.|+.+ T Consensus 159 ~L~r~s~~r--rlW~at 173 (198) T PRK12274 159 VLKRTSWIR--ELWFAT 173 (198) T ss_pred HHHHHHHHH--HHHHHC T ss_conf 998400677--878873 No 272 >cd05088 PTKc_Tie2 Catalytic Domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A Probab=96.74 E-value=0.051 Score=32.66 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=70.5 Q ss_pred EECCCCCEEEEEEEEECC-CC-E--EEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 004668120017999439-95-8--999821669988---9999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSK-GT-F--ILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~-~~-y--iLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +-|..|.--+.|+....+ |. . .++........+ ++..|+++|..|.++ |.+++-. | .....+..+. T Consensus 13 ~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~~~~~f~~E~~il~~l~~H----pnIv~l~-g--~~~~~~~~~l 85 (303) T cd05088 13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH----PNIINLL-G--ACEHRGYLYL 85 (303) T ss_pred EEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EEEECCEEEE T ss_conf 7995077849999999389979999999978444847899999999999862699----9888898-8--9832897899 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522----78899999998887 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED----LKKEIDHEFCFLKE 176 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~ 176 (316) +++|++|.++.. -+++. +..+. .... .........++.. ....+...+..+. T Consensus 86 v~Ey~~~G~L~~--------------~l~~~-~~~~~--~~~~------~~~~~~~~~l~~~~~l~i~~qIa~gl~yLH- 141 (303) T cd05088 86 AIEYAPHGNLLD--------------FLRKS-RVLET--DPAF------AIANSTASTLSSQQLLHFAADVARGMDYLS- 141 (303) T ss_pred EEECCCCCCHHH--------------HHHHC-CCCCC--CCCH------HHCCCCCCCCCHHHHHHHHHHHHHHHHHHH- T ss_conf 997479985999--------------99754-66555--6201------002354567899999999999999999871- Q ss_pred HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 6521077744402234642256279604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+++||.|+.+.|||++++...-|.||+.|. T Consensus 142 ------~~~IiHRDLKp~NILl~~~~~~KI~DFGls~ 172 (303) T cd05088 142 ------QKQFIHRDLAARNILVGENYVAKIADFGLSR 172 (303) T ss_pred ------CCCEEECCCCHHHEEECCCCCEEEEECCCCC T ss_conf ------1986745577411788899978998267786 No 273 >KOG0605 consensus Probab=96.73 E-value=0.02 Score=35.31 Aligned_cols=28 Identities=46% Similarity=0.663 Sum_probs=22.0 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCC Q ss_conf 74440223464225627-960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316) .|.||.|+.|+|+|.+. |.|. +=||+-| T Consensus 260 ~gyIHRDIKPdNlLiD~~GHiK-LSDFGLs 288 (550) T KOG0605 260 LGYIHRDIKPDNLLIDAKGHIK-LSDFGLS 288 (550) T ss_pred CCCCCCCCCHHHEEECCCCCEE-ECCCCCC T ss_conf 5851256774444565779776-0013466 No 274 >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232 This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process. Probab=96.72 E-value=0.0022 Score=41.56 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=31.9 Q ss_pred CCCCCEEECCCCCCCEEECCC----CCEEEECCCCCCC---CHHHCCHHHHHHHH Q ss_conf 077744402234642256279----6048731621356---80001989999864 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNN----KIMGLIDFYFSCN---DFLMYDLSICINAW 228 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~----~i~giIDF~~~~~---~~~i~DLAi~i~~~ 228 (316) -+.-|+=|+|+||+|+|+..+ .-..+||||-++. ..+-| ||-.+-++ T Consensus 284 v~rDGfFHAD~HpGNI~v~~d~~~Ng~i~~~DFGIVG~l~~~~r~~-LAE~l~Gf 337 (452) T TIGR01982 284 VLRDGFFHADLHPGNIFVLKDPERNGKIIALDFGIVGRLSEEDRRY-LAEILYGF 337 (452) T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH-HHHHHHHH T ss_conf 9971588788475663324787768808998537420013788999-99999999 No 275 >KOG0667 consensus Probab=96.71 E-value=0.0024 Score=41.33 Aligned_cols=31 Identities=48% Similarity=0.846 Sum_probs=25.9 Q ss_pred CCEEECCCCCCCEEECC---CCCEEEECCCCCCCC Q ss_conf 74440223464225627---960487316213568 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN---NKIMGLIDFYFSCND 215 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~---~~i~giIDF~~~~~~ 215 (316) .++||+||.|-|||..+ .+|. ||||+-+|.. T Consensus 308 l~IIHcDLKPENILL~~~~r~~vK-VIDFGSSc~~ 341 (586) T KOG0667 308 LGIIHCDLKPENILLKDPKRSRIK-VIDFGSSCFE 341 (586) T ss_pred CCEEECCCCHHHEEECCCCCCCEE-EEECCCCCCC T ss_conf 796242587576564167767616-9844531114 No 276 >cd05045 PTKc_RET Catalytic Domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (rearranged during transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi Probab=96.69 E-value=0.055 Score=32.46 Aligned_cols=30 Identities=33% Similarity=0.455 Sum_probs=25.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||.+++...-|.||+.|. T Consensus 141 ~~iiHRDlK~~NILl~~~~~~Ki~DFGls~ 170 (285) T cd05045 141 MKLVHRDLAARNVLVAEGRKMKISDFGLSR 170 (285) T ss_pred CCCEECCCCCCEEEECCCCCEEEECCCCCC T ss_conf 890605677472888689968871151110 No 277 >cd05148 PTKc_Srm_Brk Catalytic Domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom Probab=96.68 E-value=0.056 Score=32.41 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=74.5 Q ss_pred EEECCCCCEEEEEEEEECCC-CEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 10046681200179994399-58999821669--9889999999999985326775551001026778752245155786 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) .+.|..|.--+.|+....++ +..+|+..... ...++..|+.+|..|+..+| ++-. | +....+..+.+++ T Consensus 11 ~~~iG~G~fg~Vy~~~~~~~~~VAvK~i~~~~~~~~~~f~~Ei~~l~~l~HpnI-----v~~~-g--~~~~~~~~~iv~E 82 (261) T cd05148 11 ERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHL-----ISLF-A--VCSVGEPVYIITE 82 (261) T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEEECCEEEEEEE T ss_conf 029951888399999999998999999874672789999999999986799888-----4187-7--9921998999998 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |++|.++.. . |+.. .+ .... +.... .+...+...+..+.+ T Consensus 83 y~~~GsL~~-----------~---l~~~-~~------~~l~---~~~~~---------~i~~qia~gl~yLH~------- 122 (261) T cd05148 83 LMEKGSLLA-----------F---LRSP-EG------QVLP---VASLI---------DMACQVAEGMAYLEE------- 122 (261) T ss_pred CCCCCCHHH-----------H---HHCC-CC------CCCC---HHHHH---------HHHHHHHHHHHHHHH------- T ss_conf 179983899-----------8---6244-68------8799---99999---------999999999999986------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||.+.+...-+-||+.+. T Consensus 123 ~~iiHrDLK~~NiLl~~~~~~Kl~DFGls~ 152 (261) T cd05148 123 QNSIHRDLAARNILVGEDLVCKVADFGLAR 152 (261) T ss_pred CCCCCCCCCCCEEEECCCCCEEECCCCCCE T ss_conf 996667566176998899949981475546 No 278 >cd05060 PTKc_Syk_like Catalytic Domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi Probab=96.67 E-value=0.057 Score=32.35 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=64.5 Q ss_pred CCCCCEEEEEEE--EECCCC---EEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 466812001799--943995---89998216699---8899999999999853267755510010267787522451557 Q gi|254780795|r 30 IIHGVENSNFVI--QTSKGT---FILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 30 i~~G~~Ntny~v--~t~~~~---yiLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) |..|.--+.|+- .+.+++ ..+|++..... ..++..|+++|..|. -|.+++.- |- ...+..+.| T Consensus 3 iG~G~fg~Vy~g~~~~~~~~~~~VAiK~~~~~~~~~~~~~f~~E~~~l~~l~-----HpnIv~~~-g~---~~~~~~~lV 73 (257) T cd05060 3 LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLD-----HPCIVRLI-GV---CKGEPLMLV 73 (257) T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEECHHHCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-EE---EECCCEEEE T ss_conf 8558885899899986898489999999882218678999999999998679-----99884264-18---936936999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|++|.++.. .| +.. ..+ .. ...+ .+...+...+..+.+ T Consensus 74 ~Ey~~~G~L~~-----------~l---~~~-~~~--------~~---~~~~---------~~~~qia~gl~yLH~----- 113 (257) T cd05060 74 MELAPLGPLLK-----------YL---KKR-REI--------PV---SDLK---------ELAHQVAMGMAYLES----- 113 (257) T ss_pred EECCCCCCHHH-----------HH---HHC-CCC--------CH---HHHH---------HHHHHHHHHHHHHHH----- T ss_conf 98689999999-----------99---867-999--------99---9999---------999999999999986----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++.+...-|.||+.+. T Consensus 114 --~~ivHrDlK~~NiLl~~~~~vKl~DFGls~ 143 (257) T cd05060 114 --KHFVHRDLAARNVLLVNRHQAKISDFGMSR 143 (257) T ss_pred --CCEEECCCCCCCEEECCCCCEEEEECCCCE T ss_conf --995616567042578689978884140320 No 279 >cd05057 PTKc_EGFR_like Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea Probab=96.66 E-value=0.058 Score=32.32 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=70.7 Q ss_pred EEEEECCCCCEEEEEEEE-ECCC-----CEEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 531004668120017999-4399-----58999821669988999---99999999853267755510010267787522 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQ-TSKG-----TFILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~-t~~~-----~yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316) ..++.|..|.--+.|+-. ..+| +..+|+.....+.+... .|+.+|..| ..|.+++-. |-. .. T Consensus 10 e~~~~lG~G~fG~Vyk~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-----~HpnIv~l~-g~~---~~ 80 (279) T cd05057 10 EKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREATSPKANKEILDEAYVMASV-----DHPHVVRLL-GIC---LT 80 (279) T ss_pred EEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCCCEEEEC-EEE---EC T ss_conf 882697318881999899927998600799999988767878999999999999847-----999886001-289---54 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888 Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316) ...+.+++|++|.++. .-+|.....+ .. ...+ .+...+...++.+. T Consensus 81 ~~~~lV~e~~~~GsL~--------------~~l~~~~~~l--------~~---~~~~---------~~~~qia~gl~yLH 126 (279) T cd05057 81 SQVQLITQLMPLGCLL--------------DYVRNHKDNI--------GS---QYLL---------NWCVQIAKGMSYLE 126 (279) T ss_pred CCEEEEEEECCCCCHH--------------HHHHHCCCCC--------CH---HHHH---------HHHHHHHHHHHHHH T ss_conf 9769999957999589--------------9997347899--------99---9999---------99999999999997 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 76521077744402234642256279604873162135 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) + +++||+|+.+.|||++.+...-+-||+.+. T Consensus 127 ~-------~~iiHRDlK~~NILl~~~~~~ki~DFGls~ 157 (279) T cd05057 127 E-------RRLVHRDLAARNVLVKTPNHVKITDFGLAK 157 (279) T ss_pred H-------CCCCCCCCCHHHEEECCCCCEEEECCCCCE T ss_conf 6-------896346576310336899928996066433 No 280 >cd06617 PKc_MKK3_6 Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threon Probab=96.65 E-value=0.058 Score=32.30 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=67.9 Q ss_pred EEECCCCCEEEEEEEEEC-CCC-EEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 100466812001799943-995-8999821669988999---99999999853267755510010267787522451557 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTS-KGT-FILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) ++.|..|.--+.|++... +|+ |.+|+........+.. .+.+.+ + +-..+|.++.-.+ . ..-.+..+.+ T Consensus 6 ~~~iG~G~fg~V~~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~e~~~~--~--~~~~hp~iv~~~~-~--~~~~~~~~iv 78 (280) T cd06617 6 IEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDIS--M--RSSDCPYTVHFYG-A--LFREGDVWIC 78 (280) T ss_pred EEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--H--HHCCCCCEEEEEE-E--EEECCEEEEE T ss_conf 789722768299999987999799999989113867999999999999--9--8579998756999-9--9889989999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) +++++|. ++..+-+.......++- .... .....+...+..+.+ + T Consensus 79 mE~~~~~------------l~~~~~~~~~~~~~~~e--------~~~~------------~i~~qil~gl~ylH~----~ 122 (280) T cd06617 79 MEVMDTS------------LDKFYKKVYKKGLTIPE--------DILG------------KIAVSVVKALEYLHE----K 122 (280) T ss_pred EECCCCC------------HHHHHHHHHHCCCCCCH--------HHHH------------HHHHHHHHHHHHHHH----C T ss_conf 9937999------------89999999864899989--------9999------------999999999999975----4 Q ss_pred CCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 7774440223464225627-9604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||+++ +++. ++||+.|. T Consensus 123 --~~IiHRDiKP~NILl~~~g~iK-l~DFGla~ 152 (280) T cd06617 123 --LSVIHRDVKPSNILINRNGQVK-LCDFGISG 152 (280) T ss_pred --CCEEECCCCHHHEEECCCCCEE-EEECCCCC T ss_conf --9988531768985677999999-98276766 No 281 >cd05050 PTKc_Musk Catalytic Domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M Probab=96.64 E-value=0.021 Score=35.21 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=73.3 Q ss_pred CEEEEEECCCCCEEEEEEEEE------CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 605310046681200179994------3995-8999821669988---99999999999853267755510010267787 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT------SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t------~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316) ++.-++.|..|.--+.|+.+. +++. ..+|+.......+ ++..|+.+|..|.. |.+++-. | .. T Consensus 6 ~~~~~~~iG~G~fG~Vy~a~~~g~~~~~~~~~vAvK~l~~~~~~~~~~~f~~E~~il~~l~H-----pNIV~~~-g--~~ 77 (288) T cd05050 6 NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDH-----PNIVKLL-G--VC 77 (288) T ss_pred HEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EE T ss_conf 90980398228781899999758645885759999998856797899999999999985799-----9883376-7--99 Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 52245155786478870768998999999998643675306875433231124564576675200155227889999999 Q gi|254780795|r 93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316) Q Consensus 93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316) ...+..+.+++|++|..+... +.. +.--..+....+....+........+. .... -.+...+..-+. T Consensus 78 ~~~~~~~lv~Ey~~~g~L~~~----l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~-----l~i~~~ia~gl~ 144 (288) T cd05050 78 AVGKPMCLLFEYMAYGDLNEF----LRH--RSPRAQCSLSHSTSSARKCGLNPLPLS--CTEQ-----LCIAKQVAAGMA 144 (288) T ss_pred EECCEEEEEEEECCCCCHHHH----HHH--CCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHH-----HHHHHHHHHHHH T ss_conf 669976999991689909999----985--285421000112210001457778889--9999-----999999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 88876521077744402234642256279604873162135 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+.+ +++||+|+.+.|||.+++...-|.||+.+. T Consensus 145 yLH~-------~~ivHrDlKp~NiLl~~~~~~Kl~DFGls~ 178 (288) T cd05050 145 YLSE-------RKFVHRDLATRNCLVGENMVVKIADFGLSR 178 (288) T ss_pred HHHH-------CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 9863-------990526766066898799988860052540 No 282 >cd05053 PTKc_FGFR Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, Probab=96.62 E-value=0.049 Score=32.80 Aligned_cols=149 Identities=16% Similarity=0.202 Sum_probs=70.3 Q ss_pred EECCCCCEEEEEEEEE-------CCC-CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 0046681200179994-------399-589998216699889---99999999998532677555100102677875224 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-------SKG-TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-------~~~-~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) +.|..|.--+.|+.+- .++ ...+|+........+ +..|+++|..+.++ |.++.-. | ...-.+ T Consensus 18 ~~LG~G~fG~Vyk~~~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~~l~~l~~H----pnIv~~~-g--~~~~~~ 90 (294) T cd05053 18 KPLGEGAFGQVVKAEAVGLPNRQNEETTVAVKMLKEDATEKDLSDLVSEMEVMKMIGKH----KNIINLL-G--CCTQGG 90 (294) T ss_pred CEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-E--EEEECC T ss_conf 68930778299999984777757786799999988777979999999999999873489----8688787-8--980599 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHH Q ss_conf 515578647887076899899999999864367530687543323112456457667520015522----7889999999 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED----LKKEIDHEFC 172 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~ 172 (316) ..+.+++|.+|.++.. .| +.. +.... ..+. .... .....+... ....+...+. T Consensus 91 ~~~iv~Ey~~~GsL~~-----------~l---~~~-~~~~~-~~~~---~~~~----~~~~~l~~~~~~~~~~qia~gl~ 147 (294) T cd05053 91 PLYVVVEYAAHGNLRD-----------FL---RAR-RPPGE-YASS---DDPR----PPEETLTQKDLVSFAYQVARGME 147 (294) T ss_pred EEEEEEECCCCCCHHH-----------HH---HHC-CCCCC-CCCC---CCCC----CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 8899998179994999-----------99---861-87520-0122---2233----43357799999999999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 88876521077744402234642256279604873162135 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+.+ +++||.|+.+.|||.+++...-|.||+.|. T Consensus 148 yLH~-------~~IvHRDlKp~NILl~~~~~~Kl~DFGls~ 181 (294) T cd05053 148 YLAS-------KKCIHRDLAARNVLVTEGYVMKIADFGLAR 181 (294) T ss_pred HHHH-------CCCCCCCCCCCEEEECCCCEEEEEECCCCC T ss_conf 9984-------899677677020788899949997578753 No 283 >cd05049 PTKc_Trk Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt Probab=96.62 E-value=0.031 Score=34.12 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=72.0 Q ss_pred EEECCCCCEEEEEEEEE------CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 10046681200179994------3995-8999821669988---999999999998532677555100102677875224 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT------SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t------~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) .+.|..|.--+.|+-+. .+++ ..+|++......+ ++..|+++|..|... .+++-. | +..-.+ T Consensus 10 ~~~iG~G~fG~Vy~g~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~~l~~l~Hp-----nIV~l~-g--~~~~~~ 81 (280) T cd05049 10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHE-----NIVKFY-G--VCTEGD 81 (280) T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEE-E--EEEECC T ss_conf 86991375869999998267548878899999989757868999999999999877998-----874078-8--997799 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) ..+.+++|++|.++.. .++.-+. |.............+ .+... -.....+...+..+.+ T Consensus 82 ~~~lV~Ey~~~GsL~~----~l~~~~~-----~~~~~~~~~~~~~~l---~~~~~---------~~i~~qia~gl~yLH~ 140 (280) T cd05049 82 PPIMVFEYMEHGDLNK----FLRSHGP-----DAAFLKSPDSPMGEL---TLSQL---------LQIAVQIASGMVYLAS 140 (280) T ss_pred EEEEEEECCCCCCHHH----HHHHCCC-----CCCCCCCCCCCCCCC---CHHHH---------HHHHHHHHHHHHHHHH T ss_conf 7799998069991999----9987097-----510012355557777---99999---------9999999999998866 Q ss_pred HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 6521077744402234642256279604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|.|+.+.|||++.+...-|-||+.|. T Consensus 141 -------~~ivHrDlK~~NiLl~~~~~~Kl~DFGls~ 170 (280) T cd05049 141 -------QHFVHRDLATRNCLVGYDLVVKIGDFGMSR 170 (280) T ss_pred -------CCEECCCCCCCEEEECCCCCEEEEECCCCC T ss_conf -------893426657401798789888963235543 No 284 >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer Probab=96.60 E-value=0.038 Score=33.51 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=71.8 Q ss_pred CEEEEEECCCCCEEEEEEEEEC--CC----C-EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 6053100466812001799943--99----5-899982166998---899999999999853267755510010267787 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQTS--KG----T-FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t~--~~----~-yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316) ++.-++.|..|.--+.|+-+.. .+ + ..+|...+.... +++..|+++|..|.. |.+++-. | +. T Consensus 6 ~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VaiK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~~~-g--~~ 77 (283) T cd05048 6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQH-----PNIVCLL-G--VC 77 (283) T ss_pred HEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EE T ss_conf 98983697158883899999837887606779999998832697899999999999985899-----8973188-9--99 Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 5224515578647887076899899999999864367530687543323--11245645766752001552278899999 Q gi|254780795|r 93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKN--TLSPLNLKFLWAKCFDKVDEDLKKEIDHE 170 (316) Q Consensus 93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (316) .-.+..+.+++|++|.++.. .| ..+....+......+ .....++.... .+...+... T Consensus 78 ~~~~~~~lv~Ey~~~GsL~~-----------~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~i~~~ia~g 136 (283) T cd05048 78 TKEQPTCMLFEYLAHGDLHE-----------FL-VRNSPHSDVGAESGDETVKSSLDCSDFL---------HIAIQIAAG 136 (283) T ss_pred EECCEEEEEEEECCCCCHHH-----------HH-HHCCCCCCCCCCCCCCCCCCCCCHHHHH---------HHHHHHHHH T ss_conf 66886699999169990899-----------99-8618764211112333335779999999---------999999999 Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 9988876521077744402234642256279604873162135 Q gi|254780795|r 171 FCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 171 l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +..+.. +++||+|+.+.|||.+++...-|.||+.+. T Consensus 137 l~yLH~-------~~IvHrDlK~~NILl~~~~~~Ki~DFGla~ 172 (283) T cd05048 137 MEYLSS-------HHFVHRDLAARNCLVGEGLTVKISDFGLSR 172 (283) T ss_pred HHHHHH-------CCCCCCCCCCCEEEECCCCCEEEEEECCCC T ss_conf 999986-------890777556175898899938998604750 No 285 >cd05090 PTKc_Ror1 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly Probab=96.56 E-value=0.053 Score=32.56 Aligned_cols=153 Identities=10% Similarity=0.104 Sum_probs=73.5 Q ss_pred CEEEEEECCCCCEEEEEEEEE-----CCCCEE-EEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 605310046681200179994-----399589-99821669988---999999999998532677555100102677875 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT-----SKGTFI-LTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGF 93 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t-----~~~~yi-Lri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~ 93 (316) ++.-.+.|..|.--+.|+-.. +.++.| +|......+.. ++..|+++|..|..-+| ++-. | +.. T Consensus 6 ~~~~~~~IG~G~fG~Vykg~~~~~~~~~~~~VAiK~l~~~~~~~~~~~f~~E~~~l~~l~HpNI-----V~l~-g--~~~ 77 (283) T cd05090 6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNI-----VCLL-G--VVT 77 (283) T ss_pred HEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEE T ss_conf 9299879704858699999994788858889999997887897899999999999986689896-----8599-9--998 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHH Q ss_conf 2245155786478870768998999999998643675-3068754332311245645766752001552----2788999 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQ-KTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEID 168 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~-~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ 168 (316) -.+..+.+++|++|.++.. . |..-+. ...+..... .......++. .+...+. T Consensus 78 ~~~~~~iv~Ey~~~G~L~~-----~------L~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~i~~qia 134 (283) T cd05090 78 QEQPVCMLFEYLNQGDLHE-----F------LIMRSPHSDVGCSSDE------------DGTVKSSLDHGDFLHIAIQIA 134 (283) T ss_pred ECCEEEEEEEECCCCCHHH-----H------HHHCCCCCCCCCCCCC------------CCCCCCCCCHHHHHHHHHHHH T ss_conf 8997799999459990899-----9------9750765433333222------------332135789999999999999 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 999988876521077744402234642256279604873162135 Q gi|254780795|r 169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+..+.+ +++||+|+.+.|||.+.+...-|-||+.+. T Consensus 135 ~gl~yLH~-------~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~ 172 (283) T cd05090 135 AGMEYLSS-------HFFVHKDLAARNILIGEQLHVKISDLGLSR 172 (283) T ss_pred HHHHHHHH-------CCEECCCCCHHHEEECCCCCEEEEECCCCE T ss_conf 99999844-------985645048412768899989998166772 No 286 >cd05032 PTKc_InsR_like Catalytic Domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological Probab=96.52 E-value=0.071 Score=31.74 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=69.5 Q ss_pred EEEEECCCCCEEEEEEEE-----E-CCC-CEEEEEECCCCCH-HHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 531004668120017999-----4-399-5899982166998-8999--9999999985326775551001026778752 Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQ-----T-SKG-TFILTIYEKRMNE-KDLP--VFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 25 ~~~~~i~~G~~Ntny~v~-----t-~~~-~yiLri~e~~~~~-~~l~--~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +-.+.|..|.--+.|+=. . +.+ +..+|........ +... .|+.+|..|... .+++-. | +... T Consensus 9 ~i~~~iG~G~fG~Vy~g~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~f~~E~~il~~l~h~-----nIv~~~-g--~~~~ 80 (277) T cd05032 9 TLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCH-----HVVRLL-G--VVST 80 (277) T ss_pred EEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CEEEEE-E--EEEE T ss_conf 9736992176709998886687657767499999975666978999999999999877998-----881586-7--8868 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) .+..+.+++|++|.++. ..|.+......... ......+...+ .....+...+..+ T Consensus 81 ~~~~~ivmEy~~~GsL~-----------~~l~~~~~~~~~~~-----~~~~l~~~~~~---------~i~~qia~gl~yL 135 (277) T cd05032 81 GQPTLVIMELMARGDLK-----------SYLRSRRPEAENNP-----GLGPPTLQEFI---------QMAAEIADGMAYL 135 (277) T ss_pred CCEEEEEEECCCCCCHH-----------HHHHHHCCHHHCCC-----CCCCCCHHHHH---------HHHHHHHHHHHHH T ss_conf 99889999847999289-----------99986164011136-----67998999999---------9999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 876521077744402234642256279604873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+ +++||+|+.+.|||++.+...-|.||+.|. T Consensus 136 H~-------~~IiHrDlK~~NILl~~~~~~Ki~DFGls~ 167 (277) T cd05032 136 AA-------KKFVHRDLAARNCMVAEDLTVKIGDFGMAR 167 (277) T ss_pred HH-------CCCCCCCCCCCEEEECCCCCEEECCCCCCE T ss_conf 86-------895447788774898799988973141000 No 287 >KOG1166 consensus Probab=96.48 E-value=0.038 Score=33.47 Aligned_cols=51 Identities=37% Similarity=0.404 Sum_probs=30.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-------CCCEEEECCCCCC Q ss_conf 52278899999998887652107774440223464225627-------9604873162135 Q gi|254780795|r 160 DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-------NKIMGLIDFYFSC 213 (316) Q Consensus 160 ~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-------~~i~giIDF~~~~ 213 (316) +..+.-.+...+..+.+... ..++||||+.|||.|... ....-+|||+.+. T Consensus 792 ~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si 849 (974) T KOG1166 792 DEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI 849 (974) T ss_pred CCHHHHHHHHHHHHHHHHHH---HCCEECCCCCCCEEEEECCCCCCCCCCCEEEEECCCCE T ss_conf 81002577999999999987---51631046786514751466788866546999626402 No 288 >KOG0603 consensus Probab=96.44 E-value=0.0057 Score=38.84 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=27.2 Q ss_pred CCEEECCCCCCCEEEC-C-CCCEEEECCCCCCCCHHH Q ss_conf 7444022346422562-7-960487316213568000 Q gi|254780795|r 184 TGIIHADLFPDNVLFY-N-NKIMGLIDFYFSCNDFLM 218 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~-~-~~i~giIDF~~~~~~~~i 218 (316) +|++|+||+|+|||+. . +.+- ++||++++.-..- T Consensus 434 ~gvvhRDLkp~NIL~~~~~g~lr-ltyFG~a~~~~~~ 469 (612) T KOG0603 434 QGVVHRDLKPGNILLDGSAGHLR-LTYFGFWSELERS 469 (612) T ss_pred CCEEECCCCHHHEEECCCCCCEE-EEEECHHHHCCHH T ss_conf 68653578833266327988579-9972003207644 No 289 >cd05071 PTKc_Src Catalytic Domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo Probab=96.43 E-value=0.081 Score=31.40 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=75.8 Q ss_pred EEECCCCCEEEEEEEEECCC-CEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 10046681200179994399-5899982166-998899999999999853267755510010267787522451557864 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKG-TFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~-~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .+.|..|.--+.|+.....+ +..+|.+... .+.+.+..|+.+|..|...+| ++-. |- ...+..+.+++| T Consensus 11 ~~~iG~G~fg~Vy~g~~~~~~~VAiK~~~~~~~~~~~~~~Ei~~l~~l~H~nI-----v~~~-g~---~~~~~~~iv~Ey 81 (262) T cd05071 11 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-----VQLY-AV---VSEEPIYIVTEY 81 (262) T ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-----EEEE-EE---EECCCEEEEEEC T ss_conf 68994076839999999999999999987367998999999999986899897-----6699-99---926964999981 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. .|+.... .... +...+ .....+...+..+.+ . T Consensus 82 ~~~G~L~~--------------~l~~~~~-------~~~~---~~~~~---------~i~~~ia~gl~yLH~-------~ 121 (262) T cd05071 82 MSKGSLLD--------------FLKGEMG-------KYLR---LPQLV---------DMAAQIASGMAYVER-------M 121 (262) T ss_pred CCCCCHHH--------------HHHHCCC-------CCCC---HHHHH---------HHHHHHHHHHHHHHH-------C T ss_conf 79998999--------------9854558-------7899---99999---------999999999999864-------8 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++||+|+.+.|||++.+...-+.||+.|. T Consensus 122 ~iiHrDLK~~NILl~~~~~~Kl~DFGls~ 150 (262) T cd05071 122 NYVHRDLRAANILVGENLVCKVADFGLAR 150 (262) T ss_pred CEEECEECCCCEEECCCCEEEECCCCCCE T ss_conf 88724605151788799829981278764 No 290 >cd05040 PTKc_Ack_like Catalytic Domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and Probab=96.40 E-value=0.084 Score=31.28 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=68.3 Q ss_pred CCCCCEEEEEEEE--ECCCCE---EEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 4668120017999--439958---9998216699---8899999999999853267755510010267787522451557 Q gi|254780795|r 30 IIHGVENSNFVIQ--TSKGTF---ILTIYEKRMN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 30 i~~G~~Ntny~v~--t~~~~y---iLri~e~~~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) |..|.--+.|+.. +..+++ .+|+...... ..++..|+.+|..|. -|.+++-. |- ...+..+.+ T Consensus 3 iG~G~fg~Vy~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~f~~E~~il~~l~-----HpnIv~l~-g~---~~~~~~~iv 73 (257) T cd05040 3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLD-----HENLIRLY-GV---VLTHPLMMV 73 (257) T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEECHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEE-EE---EECCCEEEE T ss_conf 9558887899999978999898999999881005458999999999998689-----98982088-99---973978999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) ++|.+|.++.. .||....+ ...... . ......+...+..+.. T Consensus 74 ~Ey~~~GsL~~--------------~l~~~~~~-------~~~~~~---~---------~~~~~qia~aL~yLH~----- 115 (257) T cd05040 74 TELAPLGSLLD--------------RLRKDALG-------HFLIST---L---------CDYAVQIANGMRYLES----- 115 (257) T ss_pred EECCCCCCHHH--------------HHHHCCCC-------CCCHHH---H---------HHHHHHHHHHHHHHHH----- T ss_conf 98688999999--------------99744788-------889999---9---------9999999999999852----- Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.++|||++.+...-|.||+.+. T Consensus 116 --~~ivHrDlKp~NiLl~~~~~~Kl~DFG~a~ 145 (257) T cd05040 116 --KRFIHRDLAARNILLASDDKVKIGDFGLMR 145 (257) T ss_pred --CCCCCCCCCCCCEEECCCCCEEEEECHHHC T ss_conf --896457457120678689958981141110 No 291 >KOG0581 consensus Probab=96.37 E-value=0.039 Score=33.42 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=24.6 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 74440223464225627-9604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +.+||.|..|.|+|++. ++|. +=||+-+. T Consensus 198 ~~IIHRDIKPsNlLvNskGeVK-icDFGVS~ 227 (364) T KOG0581 198 RKIIHRDIKPSNLLVNSKGEVK-ICDFGVSG 227 (364) T ss_pred CCEEECCCCHHHEEECCCCCEE-ECCCCCCH T ss_conf 5710057788785553799778-53455337 No 292 >cd05109 PTKc_HER2 Catalytic Domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve Probab=96.32 E-value=0.093 Score=31.00 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=68.5 Q ss_pred EEEEEECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 0531004668120017999-43995-----89998216699889---999999999985326775551001026778752 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +..++-|..|.--+.|+-. ..+|+ ..+|+......... +..|+.+|..|+ .|.+++-. |-. . T Consensus 9 l~~~k~iG~G~fG~Vy~g~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~il~~l~-----hpnIv~~~-g~~---~ 79 (279) T cd05109 9 LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVG-----SPYVCRLL-GIC---L 79 (279) T ss_pred CEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEE-EEE---E T ss_conf 98825980178919997899189988868999999884579899999999999998679-----99898099-999---9 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) .+....+++++++..+ +..++.....+ .. ... -.+...+...+..+ T Consensus 80 ~~~~~lv~e~~~~G~L--------------~~~l~~~~~~~--------~~---~~~---------~~i~~qia~gl~yL 125 (279) T cd05109 80 TSTVQLVTQLMPYGCL--------------LDYVRENKDRI--------GS---QDL---------LNWCVQIAKGMSYL 125 (279) T ss_pred ECCEEEEEEECCCCCH--------------HHHHHHCCCCC--------CH---HHH---------HHHHHHHHHHHHHH T ss_conf 6890799997889978--------------99998568999--------99---999---------99999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 876521077744402234642256279604873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+ .++||+|+.+.|||++.+.-.-|.||+.+. T Consensus 126 H~-------~~IiHrDlKp~NILi~~~~~~Ki~DFGls~ 157 (279) T cd05109 126 EE-------VRLVHRDLAARNVLVKSPNHVKITDFGLAR 157 (279) T ss_pred HH-------CCEECCCCCCCCEEECCCCCEEEEECCCCC T ss_conf 85-------990137657310898899939997447761 No 293 >cd05063 PTKc_EphR_A2 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored Probab=96.30 E-value=0.096 Score=30.90 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=71.9 Q ss_pred EECCCCCEEEEEEEEE-CCCC----EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 0046681200179994-3995----8999821669988---999999999998532677555100102677875224515 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKGT----FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~~----yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +-|..|.--+.|+... .+|+ ..+|......... ++..|+++|..|...+| ++- -| +..-.+..+ T Consensus 11 ~~iG~G~fG~Vykg~~~~~g~~~~~vavK~l~~~~~~~~~~~f~~E~~~l~~l~H~nI-----v~~-~g--~~~~~~~~~ 82 (268) T cd05063 11 KVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNI-----IRL-EG--VVTKFKPAM 82 (268) T ss_pred EEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CCE-EE--EEEECCEEE T ss_conf 6983278839999999889976689999994767798999999999999986689789-----735-07--998899889 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++... |+.. ...+.. ... ......+...+..+.+ T Consensus 83 iv~Ey~~~G~L~~~--------------L~~~--------~~~~~~---~~~---------~~~~~~ia~gL~yLH~--- 125 (268) T cd05063 83 IITEYMENGALDKY--------------LRDH--------DGEFSS---YQL---------VGMLRGIAAGMKYLSD--- 125 (268) T ss_pred EEEECCCCCCHHHH--------------HHHC--------CCCCCH---HHH---------HHHHHHHHHHHHHHHH--- T ss_conf 99982898979997--------------6402--------789999---999---------9999999999999832--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||+|+.+.|||++.+...-|-||+.+. T Consensus 126 ----~~iiHrDlK~~NILld~~~~~Kl~DFGls~ 155 (268) T cd05063 126 ----MNYVHRDLAARNILVNSNLECKVSDFGLSR 155 (268) T ss_pred ----CCEECCCCCCCEEEECCCCCEEECCCCCCE T ss_conf ----998755347550788899988982376554 No 294 >cd05055 PTKc_PDGFR Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept Probab=96.24 E-value=0.064 Score=32.04 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=70.4 Q ss_pred EECCCCCEEEEEEEEEC----C---CCEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf 00466812001799943----9---958999821669988---9999999999985326775551001026778752245 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS----K---GTFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~----~---~~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k 97 (316) +.|..|.--+.|+-+.. . .+..+|......... .+-.|+++|..|.++ |.+++-. | .....+. T Consensus 41 ~~lG~G~fG~Vy~a~~~g~~~~~~~~~VAvK~l~~~~~~~~~~~f~~Ei~il~~L~~H----pNIV~l~-g--~~~~~~~ 113 (302) T cd05055 41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH----ENIVNLL-G--ACTIGGP 113 (302) T ss_pred CEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EEEECCE T ss_conf 4981177719999899078887832799999957879979999999999999746799----9980899-9--9998999 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .+.+++|++|.++.. -||... ..... +.... .....+...+..+.+ T Consensus 114 ~~iV~Ey~~~GsL~~--------------~L~~~~-------~~~l~---~~~~~---------~i~~qia~gl~yLH~- 159 (302) T cd05055 114 ILVITEYCCYGDLLN--------------FLRRKR-------ESFLT---LEDLL---------SFSYQVAKGMAFLAS- 159 (302) T ss_pred EEEEEECCCCCCHHH--------------HHHHCC-------CCCCC---HHHHH---------HHHHHHHHHHHHHHH- T ss_conf 999998689996899--------------997578-------88899---99999---------999999999999976- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 521077744402234642256279604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++.+...-|.||+.|. T Consensus 160 ------~~iiHRDLK~~NILl~~~~~~Ki~DFGla~ 189 (302) T cd05055 160 ------KNCIHRDLAARNVLLTHGKIVKICDFGLAR 189 (302) T ss_pred ------CCCCCCCCCCCCEEECCCCCEEEEECCCCE T ss_conf ------894777465022336689957860257621 No 295 >cd05042 PTKc_Aatyk Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina Probab=96.19 E-value=0.11 Score=30.55 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 99999998887652107774440223464225627960487316213 Q gi|254780795|r 166 EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 166 ~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+...+..+.+ .++||+|+.+.|||++.+...-|-||+.+ T Consensus 108 ~ia~gl~yLH~-------~~ivHrDlK~~NiLl~~~~~~Ki~DFGla 147 (269) T cd05042 108 EVASGLLWLHQ-------ADFIHSDLALRNCQLTADLSVKIGDYGLA 147 (269) T ss_pred HHHHHHHHHHH-------CCEEECCCCCCEEEECCCCCEEEEECCCC T ss_conf 99999999975-------89542676540178889992999867577 No 296 >cd05080 PTKc_Tyk2_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign Probab=96.18 E-value=0.11 Score=30.53 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=70.5 Q ss_pred EEEEEECCCCCEEEEEEEEE-----CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 05310046681200179994-----3995-8999821669988---9999999999985326775551001026778752 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-----SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-----~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +.-++.|..|.=-+.|+... ..|+ ..+|......... .+..|+++|..|.. |.+++-. |- ...- T Consensus 6 l~~~k~iG~G~FG~V~~~~~~~~~~~~g~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~-g~-~~~~ 78 (283) T cd05080 6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYH-----ENIVKYK-GC-CSEQ 78 (283) T ss_pred CEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE-EECC T ss_conf 888179525778499980684137888929999998844597789999999999986799-----8770089-89-8328 Q ss_pred CCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 245-1557864788707689989999999986436753068754332311245645766752001552278899999998 Q gi|254780795|r 95 CKK-PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 95 ~~k-~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) .++ .+.+++|++|.++... | ++ +..... ... .....+...+.. T Consensus 79 ~~~~~~lv~Ey~~~GsL~~~-----------l---~~----------~~l~~~---~~~---------~~~~qia~gl~y 122 (283) T cd05080 79 GGKGLQLIMEYVPLGSLRDY-----------L---PK----------HKLNLA---QLL---------LFAQQICEGMAY 122 (283) T ss_pred CCCEEEEEEECCCCCCHHHH-----------H---HC----------CCCCHH---HHH---------HHHHHHHHHHHH T ss_conf 99689999976799998886-----------3---01----------799999---999---------999999999999 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 8876521077744402234642256279604873162135 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+ +++||.|+.+.|||++.+...-|.||+.|. T Consensus 123 LH~-------~~iiHRDlK~~NiLl~~~~~~Ki~DFGlsr 155 (283) T cd05080 123 LHS-------QHYIHRDLAARNVLLDNDRLVKIGDFGLAK 155 (283) T ss_pred HHC-------CCCCCCCCCCCEEEECCCCCEEEEECEEEE T ss_conf 830-------991537567410788789978984222014 No 297 >cd05069 PTKc_Yes Catalytic Domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an Probab=96.18 E-value=0.11 Score=30.52 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=75.7 Q ss_pred EEECCCCCEEEEEEEEECC-CCEEEEEECCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 1004668120017999439-95899982166-998899999999999853267755510010267787522451557864 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSK-GTFILTIYEKR-MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~-~~yiLri~e~~-~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .+.|..|.--+.|+-+... .+..+|..... ...+.+..|+.+|..|+..+| ++-. |- ...+..+.+++| T Consensus 11 ~~~IG~G~fG~V~~g~~~~~~~VAvK~~~~~~~~~~~f~~E~~~l~~l~HpnI-----v~~~-g~---~~~~~~~iv~Ey 81 (260) T cd05069 11 DVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKL-----VPLY-AV---VSEEPIYIVTEF 81 (260) T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-----EEEE-EE---ECCCCEEEEEEC T ss_conf 27981188869999998999899999987676888999999999986799888-----7674-67---736976999980 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++.. .| +. ..+ ..... ... -.+...+...+..+.+ . T Consensus 82 ~~~g~L~~-----------~l---~~-~~~------~~l~~---~~~---------~~i~~qia~gl~yLH~-------~ 121 (260) T cd05069 82 MGKGSLLD-----------FL---KE-GDG------KYLKL---PQL---------VDMAAQIADGMAYIER-------M 121 (260) T ss_pred CCCCCHHH-----------HH---HH-CCC------CCCCH---HHH---------HHHHHHHHHHHHHHHH-------C T ss_conf 79998899-----------99---73-888------86899---999---------9999999999999976-------9 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++||+|+.+.|||++++...-+.||+.|. T Consensus 122 ~ivHrDlKp~NiLl~~~~~~Kl~DFGla~ 150 (260) T cd05069 122 NYIHRDLRAANILVGDNLVCKIADFGLAR 150 (260) T ss_pred CEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 90346156372898799978982146525 No 298 >KOG0032 consensus Probab=96.11 E-value=0.077 Score=31.53 Aligned_cols=144 Identities=19% Similarity=0.323 Sum_probs=76.8 Q ss_pred HHHCCCCCEEEEEECCCCCEEEEEEEEECC-C-CEEEEEECCCC-----CHHHHHHHHHHHHHHHHC--CCCCCCCCCCC Q ss_conf 984899860531004668120017999439-9-58999821669-----988999999999998532--67755510010 Q gi|254780795|r 16 VQEYAIGQLNSVQPIIHGVENSNFVIQTSK-G-TFILTIYEKRM-----NEKDLPVFIELLHYISRN--KLPCPIPIPRN 86 (316) Q Consensus 16 l~~y~lg~~~~~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~~-----~~~~l~~~~~ll~~L~~~--gipvP~pi~~~ 86 (316) -..|.+| +.+..|---.+|...... | +|-.|+..++. ....+.-|+..|++|+.+ -+..+....+. T Consensus 34 ~~~Y~l~-----~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~ 108 (382) T KOG0032 34 KEKYELG-----RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDP 108 (382) T ss_pred CCCEEEE-----EEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC T ss_conf 2126753-----35468973378997766899615899830321346311788999999998635799788761379716 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 26778752245155786478870768998999999998643675306875433231124564576675200155227889 Q gi|254780795|r 87 DGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKE 166 (316) Q Consensus 87 ~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (316) + ....+++.++|..+-. .+.+. | |. .......... T Consensus 109 ~---------~~~lvmEL~~GGeLfd-------~i~~~----~-----~s--------------------E~da~~~~~~ 143 (382) T KOG0032 109 D---------SVYLVMELCEGGELFD-------RIVKK----H-----YS--------------------ERDAAGIIRQ 143 (382) T ss_pred C---------EEEEEEEECCCCHHHH-------HHHHC----C-----CC--------------------HHHHHHHHHH T ss_conf 6---------0155543046725888-------89872----7-----76--------------------8998888898 Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHH Q ss_conf 99999988876521077744402234642256279-----6048731621356800 Q gi|254780795|r 167 IDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFL 217 (316) Q Consensus 167 l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~ 217 (316) +...+..+.. .|++|.|+-|.|+|+... ++. ++||+.+..... T Consensus 144 il~av~~lH~-------~gvvHrDlKpEN~L~~~~~~~~~~ik-~~DFGla~~~~~ 191 (382) T KOG0032 144 ILEAVKYLHS-------LGVVHRDLKPENLLLASKDEGSGRIK-LIDFGLAKFIKP 191 (382) T ss_pred HHHHHHHHHH-------CCEEECCCCHHHCEECCCCCCCCCEE-EECCCCCCCCCC T ss_conf 8999999986-------79655147876701102546777566-521687631688 No 299 >cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a Probab=95.97 E-value=0.14 Score=29.90 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=70.6 Q ss_pred EEEEEECCCCCEEEEEEEEE-----CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 05310046681200179994-----3995-8999821669988---9999999999985326775551001026778752 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQT-----SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t-----~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +..++.|..|.=-+.|+..- ..|+ +.+|......... ++..|+++|..|... .+++-. |- ...- T Consensus 6 ~k~~~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~Hp-----NIv~~~-g~-~~~~ 78 (284) T cd05079 6 LKRIRDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGEHIADLKKEIEILRNLYHE-----NIVKYK-GI-CTEE 78 (284) T ss_pred CEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-EE-EECC T ss_conf 8644596137083999858864427779399999984212867899999999999867998-----884086-57-8337 Q ss_pred CCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 245-1557864788707689989999999986436753068754332311245645766752001552278899999998 Q gi|254780795|r 95 CKK-PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 95 ~~k-~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) .++ .+.+++|++|.++.. .| ++.. +...... .. .....+...++. T Consensus 79 ~~~~~~lVmEy~~~GsL~~-----------~l---~~~~--------~~l~~~~---~~---------~~~~qia~gl~y 124 (284) T cd05079 79 GGNGIKLIMEFLPSGSLKE-----------YL---PRNK--------NKINLKQ---LL---------KYAVQICKGMDY 124 (284) T ss_pred CCCEEEEEEEECCCCCHHH-----------HH---HHCC--------CCCCHHH---HH---------HHHHHHHHHHHH T ss_conf 9977999999389994899-----------98---6346--------8999999---99---------999999999998 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 8876521077744402234642256279604873162135 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +. .+++||+|+.+.|||.+.+...-|-||+.+. T Consensus 125 LH-------~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~ 157 (284) T cd05079 125 LG-------SRQYVHRDLAARNVLVENERMVKIGDFGLTK 157 (284) T ss_pred HH-------HCCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 70-------3983647776223898799978997366654 No 300 >cd07876 STKc_JNK2 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes Probab=95.97 E-value=0.017 Score=35.71 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=72.3 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEE-CCCC-EEEEEECCC-CCH---HHHHHHHHHHHHHHHCCCC-CCCCCCCCH Q ss_conf 99848998605310046681200179994-3995-899982166-998---8999999999998532677-555100102 Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQT-SKGT-FILTIYEKR-MNE---KDLPVFIELLHYISRNKLP-CPIPIPRND 87 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e~~-~~~---~~l~~~~~ll~~L~~~gip-vP~pi~~~~ 87 (316) ++++|.+ ++.|..|.--+.|+..- ..|+ +.+|+.... .+. ..+-.|+.+|..|...+|. +-..... T Consensus 19 vl~rY~i-----~~~IG~G~fG~V~~a~d~~tg~~VAIK~i~~~~~~~~~~~~~~rEi~il~~l~HpnIv~l~~~f~~-- 91 (359) T cd07876 19 VLKRYQQ-----LKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTP-- 91 (359) T ss_pred HHHCEEE-----EEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-- T ss_conf 1336388-----159721508699999988999899999989101497999999999999986799698828999941-- Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 67787522451557864788707689989999999986436753068754332311245645766752001552278899 Q gi|254780795|r 88 GKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEI 167 (316) Q Consensus 88 G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (316) ...+... +..+.++++++|.- + +. +|. .++. .... .....+ T Consensus 92 ~~~~~~~-~~~ylvmE~~~~~L--------~-~~------i~~---~l~~--------~~~~------------~i~~qi 132 (359) T cd07876 92 QKSLEEF-QDVYLVMELMDANL--------C-QV------IHM---ELDH--------ERMS------------YLLYQM 132 (359) T ss_pred CCCCCCC-CEEEEEEECCCCCH--------H-HH------HHC---CCCH--------HHHH------------HHHHHH T ss_conf 6742126-60799996079988--------9-99------852---6999--------9999------------999999 Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 9999988876521077744402234642256279604873162135 Q gi|254780795|r 168 DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 168 ~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ...+..+. ..|+||.|+.|.|||++.+...-++||+.|. T Consensus 133 l~gL~ylH-------~~gIiHRDIKP~NILl~~~g~iKL~DFGlAr 171 (359) T cd07876 133 LCGIKHLH-------SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 171 (359) T ss_pred HHHHHHHH-------HCCEEECCCCHHHEEECCCCCEEECCCCCCC T ss_conf 99999998-------6892305786687698789977623534030 No 301 >KOG2269 consensus Probab=95.87 E-value=0.043 Score=33.17 Aligned_cols=76 Identities=28% Similarity=0.281 Sum_probs=43.8 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC--CCHHHC-----CHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHCCC- Q ss_conf 44402234642256279604873162135--680001-----9899998643116888787---889999988764188- Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC--NDFLMY-----DLSICINAWCFDENNTYNP---SRGFSILNGYNKVRK- 253 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~--~~~~i~-----DLAi~i~~~c~~~~~~~d~---~~~~~~l~gY~~vrp- 253 (316) -++|+|+--.|+||..+++. +||--.+. ..|... |..-.++. |...|.-+. .+.-.++.|-+-+.+ T Consensus 404 ~LVHADlSEyN~Lw~~gKvw-~IDVsQsvep~HP~~LeFL~RDc~Ni~~F--F~r~G~pn~~t~~qLFn~itgLn~tadn 480 (531) T KOG2269 404 LLVHADLSEYNLLWTPGKVW-VIDVSQSVEPSHPRSLEFLTRDCQNIITF--FTRIGTPNLPTYVQLFNLITGLNMTADN 480 (531) T ss_pred HEEECCHHHHHHEECCCCEE-EEECHHCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHHCCCCCCCC T ss_conf 51113455541312278169-99610015889961459999887789999--9844887753499999997325667882 Q ss_pred --CCHHHHHHHH Q ss_conf --9989999999 Q gi|254780795|r 254 --ISENELQSLP 263 (316) Q Consensus 254 --Ls~~E~~~l~ 263 (316) +-..|+.++- T Consensus 481 ~~~~~~E~~~lE 492 (531) T KOG2269 481 DLLVQVEQFSLE 492 (531) T ss_pred HHHHHHHHHHHH T ss_conf 443145665453 No 302 >cd05597 STKc_DMPK_like STKc_DMPK_like: Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational Probab=95.86 E-value=0.023 Score=34.97 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=68.3 Q ss_pred EECCCCCEEEEEEEEECC-C-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 004668120017999439-9-5899982166--99889---999999999985326775551001026778752245155 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSK-G-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) +.|..|.--+.|++...+ | .|.+|+..+. ....+ +..+.++|..+. .|.+++-.. ..+-.+..+. T Consensus 7 ~~IG~G~fG~V~~a~~k~tg~~~AiKii~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~yl 78 (331) T cd05597 7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGD-----RRWITNLHY---AFQDENNLYL 78 (331) T ss_pred EEEECCCCEEEEEEEECCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEEE T ss_conf 89732738299999998999899999983789227889999999999998579-----998747999---9997999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|..+. ..+.+.. ..++ ..... .....+...+..+.+ T Consensus 79 vmEy~~gGdL~-----------~~l~~~~---~~l~--------e~~a~------------~~~~qi~~aL~ylH~---- 120 (331) T cd05597 79 VMDYYVGGDLL-----------TLLSKFE---DRLP--------EDMAR------------FYLAEMVLAIDSVHQ---- 120 (331) T ss_pred EEEECCCCCHH-----------HHHHHHC---CCCC--------HHHHH------------HHHHHHHHHHHHHHH---- T ss_conf 99813797468-----------8998606---7899--------99999------------999999999999997---- Q ss_pred CCCCCEEECCCCCCCEEECC-CCCEEEECCCCC Q ss_conf 07774440223464225627-960487316213 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316) +|+||.|+.|.|||++. +.+. ++||+.| T Consensus 121 ---~~IiHRDlKPeNILl~~~g~iK-L~DFG~a 149 (331) T cd05597 121 ---LGYVHRDIKPDNVLLDKNGHIR-LADFGSC 149 (331) T ss_pred ---CCEECCCCCCCCCCCCCCCCEE-EEECCHH T ss_conf ---7906154677663346899889-9841122 No 303 >cd05047 PTKc_Tie Catalytic Domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l Probab=95.84 E-value=0.16 Score=29.53 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=67.5 Q ss_pred CCCEEEEEEEEECC-C-CE--EEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 68120017999439-9-58--99982166998---899999999999853267755510010267787522451557864 Q gi|254780795|r 32 HGVENSNFVIQTSK-G-TF--ILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 32 ~G~~Ntny~v~t~~-~-~y--iLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) .|.--+.|+..... | ++ .++........ .++..|+++|..|.++ |.++.-. | .....+..+.+++| T Consensus 5 ~G~fG~Vy~~~~~~~g~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~H----pnIv~l~-g--~~~~~~~~~lv~Ey 77 (270) T cd05047 5 EGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH----PNIINLL-G--ACEHRGYLYLAIEY 77 (270) T ss_pred CCCCCEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EECCCCEEEEEEEC T ss_conf 179968999999389979999999978444826899999999999963489----9888899-8--98529989999980 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHH Q ss_conf 788707689989999999986436753068754332311245645766752001552----2788999999988876521 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~ 180 (316) .+|.++.. .+-+- .....-+.. . ........++. .....+...+..+.+ T Consensus 78 ~~~G~L~~-----------~l~~~-~~~~~~~~~-------~----~~~~~~~~l~~~~~~~~~~~ia~gl~yLH~---- 130 (270) T cd05047 78 APHGNLLD-----------FLRKS-RVLETDPAF-------A----IANSTASTLSSQQLLHFAADVARGMDYLSQ---- 130 (270) T ss_pred CCCCCHHH-----------HHHHC-CCCCCCCHH-------H----HCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---- T ss_conf 79996999-----------99854-655446202-------1----114655778999999999999999998710---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++.+...-|-||+.|. T Consensus 131 ---~~iiHRDlK~~NILl~~~~~~Kl~DFGla~ 160 (270) T cd05047 131 ---KQFIHRDLAARNILVGENYVAKIADFGLSR 160 (270) T ss_pred ---CCCCCCCCCHHEEEECCCCCEEEEECCCCC T ss_conf ---992537677202899999978995668886 No 304 >cd05110 PTKc_HER4 Catalytic Domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin Probab=95.82 E-value=0.16 Score=29.48 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=68.5 Q ss_pred EEEEEECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 0531004668120017999-43995-----8999821669988---9999999999985326775551001026778752 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) +..++-|..|.--+.|+-. ..+|+ +.+|+........ ++..|+.+|..|.. |.+++-. |- .. T Consensus 9 l~~~k~LG~G~FG~Vy~a~~~~~g~~~~~~vAvK~l~~~~~~~~~~~f~~E~~il~~l~H-----pnIV~l~-g~---~~ 79 (303) T cd05110 9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDH-----PHLVRLL-GV---CL 79 (303) T ss_pred CEEEEEEEECCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-EE---EE T ss_conf 988259820789499958990899888789999997744487899999999999986899-----8989198-99---98 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 24515578647887076899899999999864367530687543323112456457667520015522788999999988 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFL 174 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 174 (316) ....+.+++|++|..+. --+|.....++ .. .. -.....+...+..+ T Consensus 80 ~~~~~lV~E~~~~G~L~--------------~~l~~~~~~l~--------~~---~~---------~~~~~qia~gl~yL 125 (303) T cd05110 80 SPTIQLVTQLMPHGCLL--------------DYVHEHKDNIG--------SQ---LL---------LNWCVQIAKGMMYL 125 (303) T ss_pred ECCEEEEEEECCCCCHH--------------HHHHHHCCCCC--------HH---HH---------HHHHHHHHHHHHHH T ss_conf 58859999976898788--------------87775168889--------99---99---------99999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 876521077744402234642256279604873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+ +++||.|+.+.|||++.+...-|.||+.|. T Consensus 126 H~-------~~IiHRDLKp~NILl~~~~~vKI~DFGlar 157 (303) T cd05110 126 EE-------RRLVHRDLAARNVLVKSPNHVKITDFGLAR 157 (303) T ss_pred HH-------CCCCCCCCCCCCEEECCCCCEEECCCCCCE T ss_conf 66-------895346653104798899988981264525 No 305 >cd05086 PTKc_Aatyk2 Catalytic Domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage Probab=95.79 E-value=0.16 Score=29.39 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=24.3 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 74440223464225627960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+++|+|+.+.|||++.+...-|-||+-+ T Consensus 118 ~~ivHrDLK~~NiLl~~~~~~Ki~DFGla 146 (268) T cd05086 118 HNFLHSDLALRNCFLTSDLTVKVGDYGIG 146 (268) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCC T ss_conf 89716777720189989997999877887 No 306 >cd05062 PTKc_IGF-1R Catalytic Domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh Probab=95.71 E-value=0.18 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.8 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|.||+.+. T Consensus 138 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGla~ 167 (277) T cd05062 138 NKFVHRDLAARNCMVAEDFTVKIGDFGMTR 167 (277) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 894536566131788899929983052550 No 307 >cd05065 PTKc_EphR_B Catalytic Domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr Probab=95.71 E-value=0.18 Score=29.20 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=69.4 Q ss_pred EECCCCCEEEEEEEEEC-CCC----EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 00466812001799943-995----8999821669988---999999999998532677555100102677875224515 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS-KGT----FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~-~~~----yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) +-|..|.--+.|+-... .|+ ..+|......+.. ++-.|+++|..|+..+| ++- -|- ....+..+ T Consensus 10 ~~iG~G~fG~Vy~g~~~~~g~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNI-----v~~-~g~--~~~~~~~~ 81 (269) T cd05065 10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNI-----IHL-EGV--VTKSRPVM 81 (269) T ss_pred EEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC-----CEE-EEE--EEECCEEE T ss_conf 8992177839999999379965079999998845797999999999999986899788-----719-999--98899889 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++... ++.... .+. +.... .+...+...+..+.+ T Consensus 82 lv~Ey~~~GsL~~~--------------l~~~~~--------~~~---~~~~~---------~~~~~ia~gl~yLH~--- 124 (269) T cd05065 82 IITEFMENGALDSF--------------LRQNDG--------QFT---VIQLV---------GMLRGIAAGMKYLSE--- 124 (269) T ss_pred EEEEECCCCCHHHH--------------HHHCCC--------CCC---HHHHH---------HHHHHHHHHHHHHHH--- T ss_conf 99991899918999--------------973679--------999---99999---------999999999999866--- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||+|+.+.|||.+.+...-+.||+.+. T Consensus 125 ----~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~ 154 (269) T cd05065 125 ----MNYVHRDLAARNILVNSNLVCKVSDFGLSR 154 (269) T ss_pred ----CCEECCCCCCCCEEECCCCCEEEEECCCCE T ss_conf ----987416677030667799969983353567 No 308 >KOG0595 consensus Probab=95.70 E-value=0.12 Score=30.20 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=71.9 Q ss_pred EECCCCCEEEEEEEEE-CCCCEE-EEEECCC-CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 0046681200179994-399589-9982166-99---8899999999999853267755510010267787522451557 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-SKGTFI-LTIYEKR-MN---EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-~~~~yi-Lri~e~~-~~---~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) +.|..|.--+.|.=.- +++..| .|-..+. .+ .+.|..|+.+|..|.. |.+|.-.+ +....+..+.| T Consensus 16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H-----~nIV~l~d---~~~~~~~i~lV 87 (429) T KOG0595 16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKH-----PNIVRLLD---CIEDDDFIYLV 87 (429) T ss_pred HHCCCCCEEEEEEEEECCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEEE---EEECCCEEEEE T ss_conf 02067612799986761578468754002420279999999999999985588-----55535778---88649869999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 86478870768998999999998643675306875433231124564576675200155227889999999888765210 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKN 181 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 181 (316) |+|.+|..+.. .+...| +++ ... .......|...++.+.+ T Consensus 88 MEyC~gGDLs~----yi~~~~----~l~---------------e~t------------~r~Fm~QLA~alq~L~~----- 127 (429) T KOG0595 88 MEYCNGGDLSD----YIRRRG----RLP---------------EAT------------ARHFMQQLASALQFLHE----- 127 (429) T ss_pred EEECCCCCHHH----HHHHCC----CCC---------------HHH------------HHHHHHHHHHHHHHHHH----- T ss_conf 87578888899----998727----898---------------899------------99999999999999987----- Q ss_pred CCCCEEECCCCCCCEEECCC------CCEEEECCCCCCC Q ss_conf 77744402234642256279------6048731621356 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNN------KIMGLIDFYFSCN 214 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~------~i~giIDF~~~~~ 214 (316) +++||-|+.|.|+|...+ -+.-|=||++|.+ T Consensus 128 --~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~ 164 (429) T KOG0595 128 --NNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARF 164 (429) T ss_pred --CCEEECCCCCCEEEECCCCCCCCCCEEEECCCCHHHH T ss_conf --7901046785437713677777775578604431211 No 309 >cd05051 PTKc_DDR Catalytic Domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke Probab=95.63 E-value=0.19 Score=29.01 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=60.8 Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 8999821669988---9999999999985326775551001026778752245155786478870768998999999998 Q gi|254780795|r 48 FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSM 124 (316) Q Consensus 48 yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~ 124 (316) ..+|......+.. ++..|+.+|..|...+ +++-. | +...++..+.+++|++|.++.. . T Consensus 49 VAvK~l~~~~~~~~~~~f~~Ei~il~~l~Hpn-----Iv~~~-g--~~~~~~~~~lV~Ey~~~G~L~~-----------~ 109 (296) T cd05051 49 VAVKKLRPDASDNAREDFLKEVKILSRLSDPN-----IARLL-G--VCTQDPPLCMIMEYMENGDLNQ-----------F 109 (296) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC-----CCCEE-E--EEEECCEEEEEEEECCCCCHHH-----------H T ss_conf 99999787689789999999999998689948-----88798-9--9988998899999068997899-----------9 Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE Q ss_conf 64367530687543323112456457667520015522788999999988876521077744402234642256279604 Q gi|254780795|r 125 LASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIM 204 (316) Q Consensus 125 La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~ 204 (316) |-+ |.............+ .+.... .+...+...+.++.+ +++||+|+.+.|||++.+... T Consensus 110 l~~-~~~~~~~~~~~~~~l---~~~~~~---------~i~~qia~gl~yLh~-------~~iiHrDlK~~NiLl~~~~~~ 169 (296) T cd05051 110 LQK-HVAETSGLACNSKTL---SFSTLL---------YMATQIASGMKYLES-------LNFVHRDLATRNCLVGKNYTI 169 (296) T ss_pred HHH-CCCCCCCCCCCCCCC---CHHHHH---------HHHHHHHHHHHHHHH-------CCEECCCCCCCEEEECCCCCE T ss_conf 986-356543200135778---999999---------999999999999977-------993447567265998899989 Q ss_pred EEECCCCCC Q ss_conf 873162135 Q gi|254780795|r 205 GLIDFYFSC 213 (316) Q Consensus 205 giIDF~~~~ 213 (316) -|.||+.|. T Consensus 170 Ki~DFGlsr 178 (296) T cd05051 170 KIADFGMSR 178 (296) T ss_pred EEEECCCCC T ss_conf 998656773 No 310 >cd05044 PTKc_c-ros Catalytic Domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male Probab=95.61 E-value=0.19 Score=28.95 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=59.6 Q ss_pred CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 589998216699889---99999999998532677555100102677875224515578647887076899899999999 Q gi|254780795|r 47 TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGS 123 (316) Q Consensus 47 ~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~ 123 (316) ++.+|.........+ +-.|+.+|..|.. |.+++-. | ....++..+.+++|++|.++.. T Consensus 28 ~VAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~-g--~~~~~~~~~lvmE~~~~GsL~~----------- 88 (270) T cd05044 28 RVAVKTLRKGATDQEKKEFLKEAHLMSNFNH-----PNILKLL-G--VCLLNEPQYLILELMEGGDLLS----------- 88 (270) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE-E--EEEECCEEEEEEECCCCCCHHH----------- T ss_conf 9999998866897999999999999985899-----8988198-9--9998998899998468986999----------- Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-- Q ss_conf 864367530687543323112456457667520015522788999999988876521077744402234642256279-- Q gi|254780795|r 124 MLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-- 201 (316) Q Consensus 124 ~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-- 201 (316) .|+.. +..... .... .+.... .+...+..-+..+.+ +++||+|+.+.|||++.+ T Consensus 89 ---~l~~~-~~~~~~-~~~l---~~~~~~---------~i~~~ia~gl~yLH~-------~~ivHrDlKp~NILl~~~~~ 144 (270) T cd05044 89 ---YLRGA-RVTRFG-PPLL---TLSELL---------DICLDVAKGCVYLER-------MHFIHRDLAARNCLVSEKTY 144 (270) T ss_pred ---HHHHC-CCCCCC-CCCC---CHHHHH---------HHHHHHHHHHHHHHH-------CCCCCCCCCCCEEEECCCCC T ss_conf ---98631-335577-7667---999999---------999999999999997-------89516777744179735777 Q ss_pred ----CCEEEECCCCCC Q ss_conf ----604873162135 Q gi|254780795|r 202 ----KIMGLIDFYFSC 213 (316) Q Consensus 202 ----~i~giIDF~~~~ 213 (316) .+.-|.||+.+. T Consensus 145 ~~~~~~vKl~DFGla~ 160 (270) T cd05044 145 SDADRVVKIGDFGLAR 160 (270) T ss_pred CCCCCCEEEEECCCCC T ss_conf 7777727981447733 No 311 >cd06629 STKc_MAPKKK_Bck1_like Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressio Probab=95.54 E-value=0.032 Score=34.00 Aligned_cols=136 Identities=18% Similarity=0.257 Sum_probs=68.4 Q ss_pred CCCCEEEEEEEE-ECCCC-EEEEEECCC------CCH------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 668120017999-43995-899982166------998------8999999999998532677555100102677875224 Q gi|254780795|r 31 IHGVENSNFVIQ-TSKGT-FILTIYEKR------MNE------KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 31 ~~G~~Ntny~v~-t~~~~-yiLri~e~~------~~~------~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~ 96 (316) ..|.--+.|+.. +..|+ |.+|..+.. ... ..+..|+++|..|. -|.+++-.+ +..-.+ T Consensus 10 G~G~fg~V~~a~~~~tg~~vAvK~i~~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~l~-----HpnIv~~~~---~~~~~~ 81 (272) T cd06629 10 GKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLD-----HLNIVQYLG---FETTEE 81 (272) T ss_pred ECCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECC T ss_conf 017083999999889998999999710102121157888999999999999998689-----988865999---995099 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) ..+.+++|++|..+.. . + +.. ..+ ...... .....+...+..+.+ T Consensus 82 ~~~ivmEy~~~g~L~~-----~------l---~~~-~~l--------~e~~~~------------~~~~qll~gl~yLH~ 126 (272) T cd06629 82 YLSIFLEYVPGGSIGS-----C------L---RTY-GRF--------EEQLVR------------FFTEQVLEGLAYLHS 126 (272) T ss_pred EEEEEEEECCCCCHHH-----H------H---HHC-CCC--------CHHHHH------------HHHHHHHHHHHHHHH T ss_conf 8999999039787899-----9------9---865-999--------999999------------999999999999998 Q ss_pred HHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCH Q ss_conf 6521077744402234642256279604873162135680 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF 216 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~ 216 (316) +++||.|+.|.|||++.+...-+.||+.|.... T Consensus 127 -------~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 159 (272) T cd06629 127 -------KGILHRDLKADNLLVDADGICKISDFGISKKSD 159 (272) T ss_pred -------CCCCCCCCCHHHEEECCCCCEEEEECCCCEECC T ss_conf -------796178787211799899989994378771557 No 312 >KOG0616 consensus Probab=95.47 E-value=0.17 Score=29.24 Aligned_cols=146 Identities=16% Similarity=0.339 Sum_probs=69.7 Q ss_pred CCCCCEEEEEECCCCCEEEEEEEEECCC-C-EEEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 8998605310046681200179994399-5-899982166--99889999999999985326775551001026778752 Q gi|254780795|r 19 YAIGQLNSVQPIIHGVENSNFVIQTSKG-T-FILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 19 y~lg~~~~~~~i~~G~~Ntny~v~t~~~-~-yiLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) |+|.+...++-+..|.=-+.-+|....+ . |.+|+-.+. +.-.+.+--++--.-|+. +..|-+++- +.+. T Consensus 41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~~~yYAmKvL~k~~vVklKQveH~~nEk~vL~~--v~~PFlv~l-----~~t~ 113 (355) T KOG0616 41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKA--VSHPFLVKL-----YGTF 113 (355) T ss_pred CCHHHHEEEEEECCCCCCEEEEEEECCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEE-----EEEE T ss_conf 434442001344047642589998717884652223177877879999977618989754--048737788-----7864 Q ss_pred --CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf --245155786478870768998999999998643675306875433231124564576675200155227889999999 Q gi|254780795|r 95 --CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316) Q Consensus 95 --~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316) .+..+.|++|++|- ++..-+++ ...|+.+. ... ..+++.-.++ T Consensus 114 kd~~~lymvmeyv~GG--------------ElFS~Lrk-~~rF~e~~--------arF------------YAAeivlAle 158 (355) T KOG0616 114 KDNSNLYMVMEYVPGG--------------ELFSYLRK-SGRFSEPH--------ARF------------YAAEIVLALE 158 (355) T ss_pred CCCCEEEEEEECCCCC--------------HHHHHHHH-CCCCCCHH--------HHH------------HHHHHHHHHH T ss_conf 1377789998337874--------------08999975-16888546--------778------------8999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 88876521077744402234642256279604873162135 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+.+ .++|..|+.|.|+|.+.+.-.-|.||++|- T Consensus 159 ylH~-------~~iiYRDLKPENiLlD~~G~iKitDFGFAK 192 (355) T KOG0616 159 YLHS-------LDIIYRDLKPENLLLDQNGHIKITDFGFAK 192 (355) T ss_pred HHHH-------CCEEECCCCHHHEEECCCCCEEEEECCCEE T ss_conf 9874-------673643688777454467867887436348 No 313 >cd05056 PTKc_FAK Catalytic Domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions Probab=95.44 E-value=0.045 Score=33.02 Aligned_cols=135 Identities=14% Similarity=0.108 Sum_probs=66.1 Q ss_pred ECCCCCEEEEEEEEE--CCCC---EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 046681200179994--3995---8999821669988---9999999999985326775551001026778752245155 Q gi|254780795|r 29 PIIHGVENSNFVIQT--SKGT---FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 29 ~i~~G~~Ntny~v~t--~~~~---yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) .|..|.--+.|+-.- ..++ ..+++.....+.. .+..|+.+|..|.. |.+++-. |- ..++..+. T Consensus 13 ~iG~G~fG~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g~---~~~~~~~i 83 (270) T cd05056 13 CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDH-----PHIVKLI-GV---ITENPVWI 83 (270) T ss_pred EEEECCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-EE---EEECCEEE T ss_conf 994077879999999868980899999996601798999999999999986899-----8988499-99---97498799 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++. ..| .+. . ..... ... ......+...+..+.+ T Consensus 84 vmE~~~~G~L~-----------~~l---~~~--~------~~l~~---~~~---------~~~~~qia~gl~ylH~---- 125 (270) T cd05056 84 VMELAPLGELR-----------SYL---QVN--K------YSLDL---ASL---------ILYSYQLSTALAYLES---- 125 (270) T ss_pred EEEECCCCCHH-----------HHH---HHC--C------CCCCH---HHH---------HHHHHHHHHHHHHHHH---- T ss_conf 99924998899-----------999---866--8------99999---999---------9999999999999974---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|.||+.|. T Consensus 126 ---~~iiHrDlKp~NiLl~~~~~vKl~DFGls~ 155 (270) T cd05056 126 ---KRFVHRDIAARNVLVSSPDCVKLGDFGLSR 155 (270) T ss_pred ---CCCCCCCCCCCCEEECCCCCEEEEECCCCE T ss_conf ---996357578232304799978999568886 No 314 >cd05061 PTKc_InsR Catalytic Domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta Probab=95.41 E-value=0.22 Score=28.51 Aligned_cols=148 Identities=12% Similarity=0.143 Sum_probs=68.3 Q ss_pred EEEECCCCCEEEEEEEEECC-------CCEEEEEECCCCC-HHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 31004668120017999439-------9589998216699-889--9999999999853267755510010267787522 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSK-------GTFILTIYEKRMN-EKD--LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~-------~~yiLri~e~~~~-~~~--l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316) -.+.|..|.--+.|+-...+ .++.+|...+... .+. ...|+.+|..|... .+++-. | +..-. T Consensus 10 l~~~iG~G~fG~Vykg~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~f~~E~~~l~~l~h~-----nIv~l~-g--~~~~~ 81 (288) T cd05061 10 LLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-----HVVRLL-G--VVSKG 81 (288) T ss_pred EEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-E--EEEEC T ss_conf 833980276729999895477678637089999978655867899999999999867999-----887599-9--99989 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888 Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316) Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316) +..+.+++|++|.++.. .|-++.......+. + ....+...+ .+...+...+..+. T Consensus 82 ~~~~ivmE~~~~G~L~~-----------~l~~~~~~~~~~~~-~----~~~~~~~~~---------~~~~qia~gl~yLH 136 (288) T cd05061 82 QPTLVVMELMAHGDLKS-----------YLRSLRPEAENNPG-R----PPPTLQEMI---------QMAAEIADGMAYLN 136 (288) T ss_pred CEEEEEEEECCCCCHHH-----------HHHHHCCCCCCCCC-C----CCHHHHHHH---------HHHHHHHHHHHHHH T ss_conf 96799999058994999-----------99872641014667-8----865499999---------99999999999986 Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 76521077744402234642256279604873162135 Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) + +++||.|+.+.|||++++...-|.||+.|. T Consensus 137 ~-------~~IiHRDLKp~NILl~~~~~vKl~DFGls~ 167 (288) T cd05061 137 A-------KKFVHRDLAARNCMVAHDFTVKIGDFGMTR 167 (288) T ss_pred H-------CCCCCCCCCCCCEEECCCCCEEEEECCCCE T ss_conf 1-------995547668784788999968995566750 No 315 >KOG0610 consensus Probab=95.40 E-value=0.19 Score=29.00 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=63.8 Q ss_pred EEECCCCCEEEEEEEEECCC--CEEEEEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC--CC Q ss_conf 10046681200179994399--5899982166-----998899999999999853267755510010267787522--45 Q gi|254780795|r 27 VQPIIHGVENSNFVIQTSKG--TFILTIYEKR-----MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC--KK 97 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t~~~--~yiLri~e~~-----~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~--~k 97 (316) ++.+..|..-+.|+++.... -|.+|+..+. -.......|-++|.-|..--+ |. .+..++ .- T Consensus 82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFl--PT--------LYa~fet~~~ 151 (459) T KOG0610 82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFL--PT--------LYASFETDKY 151 (459) T ss_pred HHHCCCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CH--------HHHEEECCCE T ss_conf 9980899850699999668984478887248988666677888889999972699860--01--------1111304651 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) .|.+|+|.+|.. ||...+.-+..+- ....... ..+++.-+++.+.. T Consensus 152 ~cl~meyCpGGd------------------L~~LrqkQp~~~f---se~~aRF------------YaAEvl~ALEYLHm- 197 (459) T KOG0610 152 SCLVMEYCPGGD------------------LHSLRQKQPGKRF---SESAARF------------YAAEVLLALEYLHM- 197 (459) T ss_pred EEEEEECCCCCC------------------HHHHHHHCCCCCC---CHHHHHH------------HHHHHHHHHHHHHH- T ss_conf 699982489952------------------8899863788865---6236789------------99999999999975- Q ss_pred HHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 52107774440223464225627-96048731621356 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) .|+|=.||.|.|||+.+ +.|. +.|||-+.. T Consensus 198 ------lGivYRDLKPENILvredGHIM-LsDFDLS~~ 228 (459) T KOG0610 198 ------LGIVYRDLKPENILVREDGHIM-LSDFDLSLR 228 (459) T ss_pred ------HCEEECCCCCCEEEEECCCCEE-EEECCCCCC T ss_conf ------1623214784226872278478-640310344 No 316 >cd07857 STKc_MPK1 The catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 subfamily. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape Probab=95.34 E-value=0.032 Score=33.95 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=24.8 Q ss_pred CCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 744402234642256279-604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++++ ++. ++||+.|. T Consensus 124 ~~IiHRDlKPeNILl~~~~~vK-l~DFGla~ 153 (332) T cd07857 124 ANVLHRDLKPGNLLVNADCELK-ICDFGLAR 153 (332) T ss_pred CCCEECCCCHHHEEECCCCCEE-EEECCCCC T ss_conf 9842125778996887899877-60425111 No 317 >KOG0593 consensus Probab=95.33 E-value=0.03 Score=34.19 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=25.1 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..||.|..|.|||+..+.++-+=||++|. T Consensus 121 n~IHRDIKPENILit~~gvvKLCDFGFAR 149 (396) T KOG0593 121 NCIHRDIKPENILITQNGVVKLCDFGFAR 149 (396) T ss_pred CEECCCCCHHHEEEECCCCEEECCCHHHH T ss_conf 80104677333677237827860303567 No 318 >cd05095 PTKc_DDR2 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit Probab=95.25 E-value=0.25 Score=28.20 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=25.1 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|-||+.|. T Consensus 149 ~~ivHrDlK~~NILl~~~~~~Ki~DFGls~ 178 (296) T cd05095 149 LNFVHRDLATRNCLVGKNYTIKIADFGMSR 178 (296) T ss_pred CCEECCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 987757566133798799989998453551 No 319 >pfam10009 DUF2252 Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function. Probab=95.17 E-value=0.016 Score=35.96 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=37.1 Q ss_pred HHCCCCCEEECCCCCCCEEE--CC-CC-CEEEECCCCCCCCHHHCCHHHHHHHHHH-CCCCCCCHH----HHHHHHHHHH Q ss_conf 21077744402234642256--27-96-0487316213568000198999986431-168887878----8999998876 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLF--YN-NK-IMGLIDFYFSCNDFLMYDLSICINAWCF-DENNTYNPS----RGFSILNGYN 249 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~--~~-~~-i~giIDF~~~~~~~~i~DLAi~i~~~c~-~~~~~~d~~----~~~~~l~gY~ 249 (316) |..-|..+|+||+|..|.=. +. ++ +-+|=|||+++.+++.+||--...+... -....+..+ .+.+++++|. T Consensus 36 ~~~~~~v~icGD~Hl~NFG~~~s~eg~lvFdiNDFDEa~~gp~ewDlkRLa~S~~laa~~~gl~~~~~~~~v~~~~~~Y~ 115 (383) T pfam10009 36 PPTGPRVWICGDCHLENFGLFASPEGRLVFDINDFDEALPGPFEWDLKRLAASLVLAARENGLSEKDARRLVRAFARSYR 115 (383) T ss_pred CCCCCCEEEECCCHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 87678546863511641577638898677568876534548729999999999999999869898999999999999999 Q ss_pred HC Q ss_conf 41 Q gi|254780795|r 250 KV 251 (316) Q Consensus 250 ~v 251 (316) .. T Consensus 116 ~~ 117 (383) T pfam10009 116 ER 117 (383) T ss_pred HH T ss_conf 99 No 320 >cd05096 PTKc_DDR1 Catalytic Domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin domain receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k Probab=95.16 E-value=0.27 Score=28.02 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++++...-|-||+.|. T Consensus 157 ~~iiHrDLK~~NILl~~~~~~Kl~DFGlsr 186 (304) T cd05096 157 LNFVHRDLATRNCLVGENLTIKIADFGMSR 186 (304) T ss_pred CCEEECCCCHHCEEECCCCCEEEECCCCCE T ss_conf 998827566520688899989995150550 No 321 >cd06630 STKc_MEKK1 Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regul Probab=95.14 E-value=0.063 Score=32.08 Aligned_cols=134 Identities=18% Similarity=0.233 Sum_probs=69.3 Q ss_pred CCCCCEEEEEEEEE-CCCC-EEEEEECC-C-CCH------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 46681200179994-3995-89998216-6-998------8999999999998532677555100102677875224515 Q gi|254780795|r 30 IIHGVENSNFVIQT-SKGT-FILTIYEK-R-MNE------KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPA 99 (316) Q Consensus 30 i~~G~~Ntny~v~t-~~~~-yiLri~e~-~-~~~------~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~ 99 (316) |..|.--+.|++.. .+|+ |.+|+... + ... +.+..|+.+|..|. -|.+++-.+ ...-.+..+ T Consensus 8 iG~G~fg~Vy~~~~~~~g~~~AiK~i~~~~~~~~~~~~~~~~~~~Ei~il~~l~-----HpnIv~~~~---~~~~~~~~~ 79 (268) T cd06630 8 LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLN-----HPHIIRMLG---ATCEDSHFN 79 (268) T ss_pred EECCCCCEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEE---EEEECCEEE T ss_conf 512748499999988999899999981321643554999999999999998689-----999941247---999899999 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57864788707689989999999986436753068754332311245645766752001552278899999998887652 Q gi|254780795|r 100 NIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 100 ~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) .+++|++|.++.. . + +.. ..++ ..... .....+...++.+.+ T Consensus 80 ivmEy~~gg~L~~-----~------l---~~~-~~~~--------e~~~~------------~~~~qi~~gl~ylH~--- 121 (268) T cd06630 80 LFVEWMAGGSVSH-----L------L---SKY-GAFK--------EAVII------------NYTEQLLRGLSYLHE--- 121 (268) T ss_pred EEEECCCCCCHHH-----H------H---HHC-CCCC--------HHHHH------------HHHHHHHHHHHHHHH--- T ss_conf 9999349897999-----9------9---874-9999--------99999------------999999999999997--- Q ss_pred HCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCC Q ss_conf 1077744402234642256279-604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~ 213 (316) +++||.|+.|.|||++.+ ...-+.||+.|. T Consensus 122 ----~~IiHRDiKp~NiLl~~~g~~vKl~DFG~a~ 152 (268) T cd06630 122 ----NQIIHRDVKGANLLIDSTGQRLRIADFGAAA 152 (268) T ss_pred ----CCCEECCCCCCEEEEECCCCEEEEEECCCCC T ss_conf ----8926334665449993899979998789870 No 322 >cd05111 PTK_HER3 Pseudokinase Domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r Probab=95.13 E-value=0.27 Score=27.96 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=68.9 Q ss_pred CEEEEEECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCHHHHHH---HHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 60531004668120017999-43995-----89998216699889999---99999998532677555100102677875 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNEKDLPV---FIELLHYISRNKLPCPIPIPRNDGKLYGF 93 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~~~l~~---~~~ll~~L~~~gipvP~pi~~~~G~~~~~ 93 (316) ++..++.|..|.=-+.|+-. ..+|+ ..+|..+...+.+.... ++..|..|.. |.+++-. | +. T Consensus 8 dl~~~~~lG~G~FG~Vykg~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~H-----pnIv~l~-g--~~- 78 (279) T cd05111 8 ELRKLKVLGSGVFGTVHKGFWIPEGDSIKIPVAIKTIQDRSGRQTFTEITDHMLAMGSLDH-----AYIVRLL-G--IC- 78 (279) T ss_pred HCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE-E--EE- T ss_conf 9988369812779199989993799889899999992665557999999999999983899-----8889099-9--99- Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 22451557864788707689989999999986436753068754332311245645766752001552278899999998 Q gi|254780795|r 94 LCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 94 ~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) .....+.+++|.++.++. ..|+..... ...... + .....+...+.. T Consensus 79 ~~~~~~iv~e~~~~GsL~--------------~~l~~~~~~--------~~~~~~---~---------~~~~qia~gl~y 124 (279) T cd05111 79 PGASLQLVTQLSPLGSLL--------------DHVRQHRGS--------LDPQRL---L---------NWCVQIAKGMYY 124 (279) T ss_pred ECCEEEEEEEECCCCCHH--------------HHHHHCCCC--------CCHHHH---H---------HHHHHHHHHHHH T ss_conf 389079999958999578--------------988645799--------999999---9---------999999999999 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 8876521077744402234642256279604873162135 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+ +++||+|+.+.|||++.+...-|-||+.+. T Consensus 125 LH~-------~~iiHrDlK~~NiLl~~~~~~Ki~DFGla~ 157 (279) T cd05111 125 LEE-------HRMVHRNLAARNILLKSDSQVQIADFGVAD 157 (279) T ss_pred HHH-------CCCCCCCCCCCCEEECCCCEEEEEECCCCC T ss_conf 976-------894446667200668789819998556743 No 323 >cd05092 PTKc_TrkA Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory Probab=95.11 E-value=0.28 Score=27.92 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=69.7 Q ss_pred EECCCCCEEEEEEEEEC------CC-CEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 00466812001799943------99-589998216699--8899999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQTS------KG-TFILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~------~~-~yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +.|..|.--+.|+.+.. ++ .+.+|..+.... ..++..|+++|..|...+| ++-. | +..-.+.. T Consensus 11 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~~~-g--~~~~~~~~ 82 (280) T cd05092 11 WELGEGAFGKVFLAECANLLPEQDKMLVAVKALKEANESARQDFQREAELLTVLQHQHI-----VRFY-G--VCTEGEPL 82 (280) T ss_pred EEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC-----CEEE-E--EEEECCEE T ss_conf 79545768689999986775587677999999785686899999999999986789986-----7088-8--99239989 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|..+.. .++.-|. -+++-...+..+ ...+ .+.. . -.+...+...+..+.+ T Consensus 83 ~lvmEy~~~G~L~~----~l~~~~~-~~~~~~~~~~~~---~~~l---~~~~----~-----~~i~~qia~gl~yLHs-- 140 (280) T cd05092 83 AMVFEYMRHGDLNR----FLRSHGP-DAKILDEGKDVA---PGQL---TLPQ----M-----LHIAAQIASGMVYLAS-- 140 (280) T ss_pred EEEEEECCCCCHHH----HHHHHCC-CCCCCHHCCCCC---CCCC---CHHH----H-----HHHHHHHHHHHHHHHH-- T ss_conf 99998069990899----9987087-410000002466---6777---9999----9-----9999999999999840-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||+|+.|.|||++.+...-+.||+.+. T Consensus 141 -----~~iiHRDlKp~NiLl~~~~~~Kl~DFGls~ 170 (280) T cd05092 141 -----LHFVHRDLATRNCLVGEGLVVKIGDFGMSR 170 (280) T ss_pred -----CCCCCCCCCCCEEEECCCCCEEECCCEECC T ss_conf -----997368667142898799948975263033 No 324 >KOG4250 consensus Probab=95.03 E-value=0.21 Score=28.64 Aligned_cols=29 Identities=38% Similarity=0.638 Sum_probs=16.6 Q ss_pred CCEEECCCCCCCEEEC----CCCCEEEECCCCC Q ss_conf 7444022346422562----7960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFY----NNKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~----~~~i~giIDF~~~ 212 (316) .|+||.|+.|+||+.- +..|.-++||+.| T Consensus 139 n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A 171 (732) T KOG4250 139 NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA 171 (732) T ss_pred CCCEECCCCCCCEEEEECCCCCEEEEEECCCCC T ss_conf 692104688770788636887247764135443 No 325 >PTZ00024 cyclin-dependent protein kinase; Provisional Probab=95.02 E-value=0.046 Score=32.96 Aligned_cols=133 Identities=12% Similarity=0.114 Sum_probs=66.1 Q ss_pred CCCCCEEEEEEEEE--CCCCEEEEEECCCC-C--HH------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 46681200179994--39958999821669-9--88------99999999999853267755510010267787522451 Q gi|254780795|r 30 IIHGVENSNFVIQT--SKGTFILTIYEKRM-N--EK------DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 30 i~~G~~Ntny~v~t--~~~~yiLri~e~~~-~--~~------~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) |..|.--+.|+..- ++..+.+|+..... . .+ .+-.|+.+|..|...+| ++..+ +..-.+.. T Consensus 16 iG~G~fG~V~~a~d~~t~~~vAiK~i~~~~~~~~~~~~~~~~~~~rEi~il~~l~H~nI-----v~~~~---~~~~~~~~ 87 (325) T PTZ00024 16 LGEGSYGKVYKAYDTILKKEVAIKKMKINKISNYIDDCGINFVLLREIKIMKEIKHKNI-----MSALD---LYCEKDYI 87 (325) T ss_pred EECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-----CEEEE---EEEECCEE T ss_conf 72075849999998899989999998734442177776668999999999986799898-----93989---99968956 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.++++++|. +.+.+.+ . ........ ......+...+..+.+ T Consensus 88 ~iv~E~~~~~------------L~~~l~~------~------~~l~~~~~------------~~i~~qil~gl~~lH~-- 129 (325) T PTZ00024 88 NLVMEIMDYD------------LAKIINR------K------IFLTDSQK------------KCILLQILNGLNVLHK-- 129 (325) T ss_pred EEEEECCCCC------------HHHHHHH------C------CCCCHHHH------------HHHHHHHHHHHHHHHH-- T ss_conf 9999547878------------8999971------6------99999999------------9999999999999998-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.|+.|.|||++.+...-++||+.|. T Consensus 130 -----~~IiHRDlKPeNILl~~~~~vKi~DFGla~ 159 (325) T PTZ00024 130 -----YYFMHRDLSPANIFINKKGEVKIADFGLCS 159 (325) T ss_pred -----CCEEECCCCHHHEEECCCCCEEECCCCCCC T ss_conf -----897406677899478899998987677772 No 326 >cd05094 PTKc_TrkC Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n Probab=94.97 E-value=0.017 Score=35.83 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=71.1 Q ss_pred EECCCCCEEEEEEEE------ECCCC-EEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 004668120017999------43995-8999821669--98899999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQ------TSKGT-FILTIYEKRM--NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~------t~~~~-yiLri~e~~~--~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +.|..|.--+.|+.+ +.++. ..+|...... ...++..|+++|..|... .+++-. | +..-.+.. T Consensus 11 ~~iG~G~FG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~il~~l~Hp-----nIV~l~-g--~~~~~~~~ 82 (291) T cd05094 11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHE-----HIVKFY-G--VCGDGDPL 82 (291) T ss_pred EEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----CCCCEE-E--EEEECCEE T ss_conf 498137686999999816763777779999997874557899999999999858998-----877388-8--98239988 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHH Q ss_conf 557864788707689989999999986436753068754332311245645766752001552----2788999999988 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEIDHEFCFL 174 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~ 174 (316) +.+++|++|.++.. .|- -|.. ...... .... .+....+.. .+...+...+..+ T Consensus 83 ~lv~Ey~~~G~L~~-----------~l~-~~~~-~~~~~~-------~~~p---~~~~~~l~~~~~~~i~~qia~gl~yL 139 (291) T cd05094 83 IMVFEYMKHGDLNK-----------FLR-AHGP-DAMILV-------DGQP---RQAKGELGLSQMLHIASQIASGMVYL 139 (291) T ss_pred EEEEEECCCCCHHH-----------HHH-HCCC-CCCCCC-------CCCC---HHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999169992999-----------998-6197-410012-------3442---01047789999999999999999999 Q ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 876521077744402234642256279604873162135 Q gi|254780795|r 175 KESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 175 ~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+ +++||.|+.+.|||++++...-|.||+.|. T Consensus 140 H~-------~~iiHRDLKp~NILl~~~~~~Ki~DFGlsr 171 (291) T cd05094 140 AS-------QHFVHRDLATRNCLVGANLLVKIGDFGMSR 171 (291) T ss_pred HH-------CCCCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 75-------892656776405998799978994465654 No 327 >KOG0608 consensus Probab=94.85 E-value=0.053 Score=32.56 Aligned_cols=30 Identities=40% Similarity=0.645 Sum_probs=25.4 Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 774440223464225627-9604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) ..|+||.|+.|||||++. +.|. +-||+.|. T Consensus 747 kmGFIHRDiKPDNILIDrdGHIK-LTDFGLCT 777 (1034) T KOG0608 747 KMGFIHRDIKPDNILIDRDGHIK-LTDFGLCT 777 (1034) T ss_pred HCCCEECCCCCCCEEECCCCCEE-EEECCCCC T ss_conf 50412225675546773678456-30024202 No 328 >cd05066 PTKc_EphR_A Catalytic Domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul Probab=94.83 E-value=0.095 Score=30.94 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=68.1 Q ss_pred ECCCCCEEEEEEEEE--CCCC---EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 046681200179994--3995---8999821669988---9999999999985326775551001026778752245155 Q gi|254780795|r 29 PIIHGVENSNFVIQT--SKGT---FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 29 ~i~~G~~Ntny~v~t--~~~~---yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) -|..|.--+.|+-.. +.++ ..+|......+.. ++-.|+++|..|.. |.+++-. | +..-.+..+. T Consensus 11 ~iG~G~fG~Vy~~~~~~~~~~~~~VAiK~l~~~~~~~~~~~f~~E~~il~~l~H-----pnIv~l~-g--~~~~~~~~~l 82 (267) T cd05066 11 VIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLGEASIMGQFDH-----PNIIHLE-G--VVTKSKPVMI 82 (267) T ss_pred EEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-E--EECCCCEEEE T ss_conf 994178959999999779976799999997866697999999999999986899-----8882499-9--9844998999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++.. . ++.....+ .. ... ......+...+..+.+ T Consensus 83 v~Ey~~~G~L~~-----~---------l~~~~~~~--------~~---~~~---------~~~~~~ia~gl~yLh~---- 124 (267) T cd05066 83 VTEYMENGSLDA-----F---------LRKHDGQF--------TV---IQL---------VGMLRGIASGMKYLSD---- 124 (267) T ss_pred EEECCCCCCHHH-----H---------HHHCCCCC--------CH---HHH---------HHHHHHHHHHHHHHHH---- T ss_conf 998379997899-----9---------97368999--------99---999---------9999999999999966---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||.|+.+.|||++.+...-|-||+.+. T Consensus 125 ---~~iiHRDlK~~NiLl~~~~~~Ki~DFGls~ 154 (267) T cd05066 125 ---MGYVHRDLAARNILVNSNLVCKVSDFGLSR 154 (267) T ss_pred ---CCEECCCCCCCEEEECCCCCEEECCCCCCE T ss_conf ---985546676254898899988985476656 No 329 >cd05108 PTKc_EGFR Catalytic Domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor Probab=94.83 E-value=0.099 Score=30.83 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=65.9 Q ss_pred EECCCCCEEEEEEEE-ECCCC-----EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 004668120017999-43995-----899982166998---899999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQ-TSKGT-----FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~-t~~~~-----yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +-|..|.--+.|+.. ..+|+ ..+|........ .++-.|+.+|..|.. |.+++-. |-. ..+.. T Consensus 13 ~~LG~G~fG~Vykg~~~~~g~~~~~~VAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIV~l~-g~~---~~~~~ 83 (316) T cd05108 13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN-----PHVCRLL-GIC---LTSTV 83 (316) T ss_pred EEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EEE---EECCE T ss_conf 08711878499968994799888689999996644587899999999999986799-----8885799-999---74885 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) ..++++++|..+. -.++.....+ ... ..+ .....+...+..+.+ T Consensus 84 ~lv~e~~~~G~L~--------------~~l~~~~~~l--------~~~---~~~---------~~~~qia~gL~yLH~-- 127 (316) T cd05108 84 QLITQLMPFGCLL--------------DYVREHKDNI--------GSQ---YLL---------NWCVQIAKGMNYLED-- 127 (316) T ss_pred EEEEEECCCCCHH--------------HHHHHHCCCC--------CHH---HHH---------HHHHHHHHHHHHHHH-- T ss_conf 8999977998889--------------9997614787--------999---999---------999999999999997-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++.+...-|.||+.|. T Consensus 128 -----~~IIHRDLKp~NILl~~~~~vKI~DFGlak 157 (316) T cd05108 128 -----RRLVHRDLAARNVLVKTPQHVKITDFGLAK 157 (316) T ss_pred -----CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf -----793215666111668899968996547656 No 330 >cd05064 PTKc_EphR_A10 Catalytic Domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor Probab=94.68 E-value=0.11 Score=30.50 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.6 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||+|+.+.|||++.+...-|.||+-+. T Consensus 126 ~~iiHrDlK~~NiLl~~~~~~Kl~DFG~~~ 155 (266) T cd05064 126 MGYVHKGLAAHKVLVNSDLVCKISGFRRLQ 155 (266) T ss_pred CCEEECCCCHHHEEECCCCCEEECCCCCCC T ss_conf 895506766550898899978988773644 No 331 >cd05091 PTKc_Ror2 Catalytic Domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like orphan receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly Probab=94.66 E-value=0.36 Score=27.16 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=68.9 Q ss_pred CEEEEEECCCCCEEEEEEEEE------CCCCE-EEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 605310046681200179994------39958-99982166998---899999999999853267755510010267787 Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT------SKGTF-ILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316) Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t------~~~~y-iLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316) ++.-.+.|..|.--+.|+-.- ++++. .+|........ +++..++.+|..|+..+ +++-. |- . T Consensus 6 ~~~~~e~IG~G~fG~Vykg~~~~~~~~~~~~~VAiK~l~~~~~~~~~~~f~~E~~~l~~l~HpN-----Iv~~~-G~--~ 77 (283) T cd05091 6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRSRLQHPN-----IVCLL-GV--V 77 (283) T ss_pred HEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC-----CCCEE-EE--E T ss_conf 9799989715888499999987887787776999999781158689999999999998189989-----88398-99--9 Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHH Q ss_conf 522451557864788707689989999999986436753068754332311245645766752001552----2788999 Q gi|254780795|r 93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDE----DLKKEID 168 (316) Q Consensus 93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ 168 (316) .-.+..+.+++|.+|..+.. .-.. -..|.-...- ... ......+.. .+...+. T Consensus 78 ~~~~~~~lv~e~~~~G~L~~-----~L~~----~~~~~~~~~~----~~~----------~~~~~~l~~~~~~~i~~qia 134 (283) T cd05091 78 TKEQPMSMIFSYSSHGDLHE-----FLVM----RSPHSDVGST----DDD----------KTVKSTLEPADFLHIVTQIA 134 (283) T ss_pred EECCEEEEEEEECCCCCHHH-----HHHH----HCCCCCCCCC----CCC----------CHHCCCCCHHHHHHHHHHHH T ss_conf 76890299999068991899-----9976----0654433444----321----------01014789999999999999 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 999988876521077744402234642256279604873162135 Q gi|254780795|r 169 HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 169 ~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+..+.+ ++++|+|+.+.|||.+++...-|.||+.+. T Consensus 135 ~gl~yLH~-------~~ivHrDlK~~NILl~~~~~vKl~DFGls~ 172 (283) T cd05091 135 AGMEFLSS-------HHVVHKDLAARNVLVFDKLNVKISDLGLFR 172 (283) T ss_pred HHHHHHHH-------CCCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 99999976-------992678676024898799968997547761 No 332 >cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including Probab=94.63 E-value=0.37 Score=27.13 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=25.4 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++++...-|-||+.|. T Consensus 148 ~~iiHrDLK~~NiLl~~~~~~Ki~DFGlar 177 (295) T cd05097 148 LNFVHRDLATRNCLVGNHYTIKIADFGMSR 177 (295) T ss_pred CCEECCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 985526667040888899978996442552 No 333 >COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms] Probab=94.63 E-value=0.1 Score=30.73 Aligned_cols=134 Identities=18% Similarity=0.261 Sum_probs=74.2 Q ss_pred CCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 89986053100466812001799943995899982166998899999999999853267755510010267787522451 Q gi|254780795|r 19 YAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 19 y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) ++...+...+-+..|..--.|...-..++-++++=+.......|.-+.+.++-|+..|+ .|++..- |+. T Consensus 19 ~~~~~~~v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~-~p~vy~y----------g~~ 87 (201) T COG2112 19 EGKYELRVEKELAKGTTSVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGV-TPEVYFY----------GED 87 (201) T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEE----------CHH T ss_conf 34224445666434644479985316854899995278632457888999998611577-8659983----------103 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +..|+|++|.++...... | .+ .. +...++.. +. T Consensus 88 ~i~me~i~G~~L~~~~~~-----~---------------~r------k~---------------l~~vlE~a--~~---- 120 (201) T COG2112 88 FIRMEYIDGRPLGKLEIG-----G---------------DR------KH---------------LLRVLEKA--YK---- 120 (201) T ss_pred HHHHHHHCCCCHHHHHHC-----C---------------CH------HH---------------HHHHHHHH--HH---- T ss_conf 410012058546566511-----1---------------68------99---------------99999999--98---- Q ss_pred HHCCCCCEEECCCCC--CCEEECCCCCEEEECCCCCC Q ss_conf 210777444022346--42256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFP--DNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~--~NiL~~~~~i~giIDF~~~~ 213 (316) .+ ..|+-|+-++. .||++.++++. |||||-|. T Consensus 121 LD--~~GI~H~El~~~~k~vlv~~~~~~-iIDFd~At 154 (201) T COG2112 121 LD--RLGIEHGELSRPWKNVLVNDRDVY-IIDFDSAT 154 (201) T ss_pred HH--HHCCCHHHHCCCCEEEEECCCCEE-EEECCCHH T ss_conf 88--755663554487326882699479-99825132 No 334 >KOG1035 consensus Probab=94.60 E-value=0.056 Score=32.42 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=26.6 Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 774440223464225627-96048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) -+|+||.|+.|.||+.+. ++|. |.||+.|+. T Consensus 715 ~~giIHRDLKP~NIFLd~~~~VK-IGDFGLAt~ 746 (1351) T KOG1035 715 DQGIIHRDLKPRNIFLDSRNSVK-IGDFGLATD 746 (1351) T ss_pred HCCEEECCCCCCEEEECCCCCEE-ECCCCCCHH T ss_conf 37434136775426775889800-166322033 No 335 >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells Probab=94.58 E-value=0.38 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=25.1 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|-||+.+. T Consensus 119 ~~iiHrDLK~~NiLl~~~~~vKl~DFGls~ 148 (269) T cd05087 119 HNYVHSDLALRNCLLTSDLTVKIGDYGLSH 148 (269) T ss_pred CCCCCCCCCCCCEEECCCCCEEEEECCCCC T ss_conf 995646455030658689838995557875 No 336 >cd05115 PTKc_Zap-70 Catalytic Domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho Probab=94.57 E-value=0.11 Score=30.62 Aligned_cols=116 Identities=20% Similarity=0.349 Sum_probs=60.7 Q ss_pred EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 899982166998---89999999999985326775551001026778752245155786478870768998999999998 Q gi|254780795|r 48 FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSM 124 (316) Q Consensus 48 yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~ 124 (316) ..+|......+. +++..|+++|..|.. |.+++-- |- . ..+..+.+++|++|.++... T Consensus 25 VavK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIV~l~-g~--~-~~~~~~ivmE~~~~G~L~~~----------- 84 (257) T cd05115 25 VAIKVLKNENEKSVRDEMMREAEIMHQLDN-----PYIVRMI-GV--C-EAEALMLVMEMASGGPLNKF----------- 84 (257) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--E-ECCCEEEEEEECCCCCHHHH----------- T ss_conf 999998813797899999999999985899-----6880699-99--9-31977999991799878999----------- Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE Q ss_conf 64367530687543323112456457667520015522788999999988876521077744402234642256279604 Q gi|254780795|r 125 LASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIM 204 (316) Q Consensus 125 La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~ 204 (316) | +. + +.... +...+ .+...+...+..+.+ +++||+|+.+.|+|.+++... T Consensus 85 l---~~--~------~~~l~---~~~~~---------~i~~qia~gl~yLH~-------~~iiHrDLK~~NiLl~~~~~~ 134 (257) T cd05115 85 L---SG--K------KDEIT---VSNVV---------ELMHQVSMGMKYLEG-------KNFVHRDLAARNVLLVNQHYA 134 (257) T ss_pred H---HC--C------CCCCC---HHHHH---------HHHHHHHHHHHHHHH-------CCCCCCCCCCCEEEECCCCCE T ss_conf 8---32--6------78999---99999---------999999999999986-------896567676210788589978 Q ss_pred EEECCCCCC Q ss_conf 873162135 Q gi|254780795|r 205 GLIDFYFSC 213 (316) Q Consensus 205 giIDF~~~~ 213 (316) -|.||+.+. T Consensus 135 Ki~DFGls~ 143 (257) T cd05115 135 KISDFGLSK 143 (257) T ss_pred EEEECCCCE T ss_conf 999768854 No 337 >cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac Probab=94.57 E-value=0.025 Score=34.66 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.9 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|.|+.+.|||.+++...-|.||+.|. T Consensus 132 ~~iiHRDlKp~NiLl~~~~~~kl~DFGls~ 161 (273) T cd05074 132 KNFIHRDLAARNCMLNENMTVCVADFGLSK 161 (273) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 893625565655899899978998468762 No 338 >cd05093 PTKc_TrkB Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly Probab=94.47 E-value=0.026 Score=34.57 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=70.7 Q ss_pred EECCCCCEEEEEEEEE-----CCCC--EEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 0046681200179994-----3995--89998216699--8899999999999853267755510010267787522451 Q gi|254780795|r 28 QPIIHGVENSNFVIQT-----SKGT--FILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t-----~~~~--yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) +.|..|.--+.|+.+. ++.+ ..+|....... ..++..|+++|..|.. |.+++-. | ...-.+.. T Consensus 11 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~il~~l~H-----pnIV~~~-g--~~~~~~~~ 82 (288) T cd05093 11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQH-----EHIVKFY-G--VCVEGDPL 82 (288) T ss_pred EEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEE T ss_conf 59804768299999980577687667999999587685899999999999986799-----8877387-8--99679989 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+++|++|.++.. .++.-|...-.+ ..+ .++..+. +... ......+...+..+.+ T Consensus 83 ~iv~Ey~~~G~L~~----~l~~~~~~~~~~---~~~---~~~~~l~---~~~~---------~~i~~qia~gl~yLH~-- 138 (288) T cd05093 83 IMVFEYMKHGDLNK----FLRAHGPDAVLM---AEG---NRPAELT---QSQM---------LHIAQQIAAGMVYLAS-- 138 (288) T ss_pred EEEEECCCCCCHHH----HHHHCCCCCCCC---CCC---CCCCCCC---HHHH---------HHHHHHHHHHHHHHHH-- T ss_conf 99998069990899----998708641000---135---7766689---9999---------9999999999999844-- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 21077744402234642256279604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++.+...-|.||+.|. T Consensus 139 -----~~iiHRDLKp~NILl~~~~~~Ki~DFGls~ 168 (288) T cd05093 139 -----QHFVHRDLATRNCLVGENLLVKIGDFGMSR 168 (288) T ss_pred -----CCCCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf -----894678777132899999939982155573 No 339 >cd05099 PTKc_FGFR4 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=94.47 E-value=0.4 Score=26.88 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=25.3 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+...-|.||+.|. T Consensus 153 ~~iiHRDLK~~NILl~~~~~~Ki~DFGlar 182 (314) T cd05099 153 RRCIHRDLAARNVLVTEDNVMKIADFGLAR 182 (314) T ss_pred CCCCCCCCCHHHEEECCCCCEEEEECCCCC T ss_conf 899688767221628799958980242445 No 340 >cd05058 PTKc_Met_Ron Catalytic Domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca Probab=94.40 E-value=0.41 Score=26.79 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=24.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||.+++...-|-||+.|. T Consensus 117 ~~ivHrDlK~~NiLld~~~~~Kl~DFGla~ 146 (262) T cd05058 117 KKFVHRDLAARNCMLDESFTVKVADFGLAR 146 (262) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 994757578240888899968997646551 No 341 >cd05075 PTKc_Axl Catalytic Domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor Probab=94.24 E-value=0.035 Score=33.75 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=24.3 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 74440223464225627960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) ++++|+|+.+.|||++.+...-|.||+.+ T Consensus 131 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls 159 (272) T cd05075 131 KSFIHRDLAARNCMLNENMNVCVADFGLS 159 (272) T ss_pred CCEECCCCCCCEEEECCCCCEEEECCCCC T ss_conf 98364767612389889998998105112 No 342 >cd05103 PTKc_VEGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp Probab=94.23 E-value=0.45 Score=26.56 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=25.2 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|.|+-+.|||++.+...-|-||+.|. T Consensus 198 ~~ivHRDLK~~NiLl~~~~~vKi~DFGlar 227 (343) T cd05103 198 RKCIHRDLAARNILLSENNVVKICDFGLAR 227 (343) T ss_pred CCCCCCCCCCCEEEECCCCCEEECCCCCCC T ss_conf 886667478500757789978981372340 No 343 >KOG0596 consensus Probab=94.21 E-value=0.11 Score=30.53 Aligned_cols=29 Identities=41% Similarity=0.728 Sum_probs=25.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .|+||.||.|-|.|+-++.+. +|||+-|- T Consensus 479 ~gIVHSDLKPANFLlVkG~LK-LIDFGIA~ 507 (677) T KOG0596 479 HGIVHSDLKPANFLLVKGRLK-LIDFGIAN 507 (677) T ss_pred HCEEECCCCCCCEEEEEEEEE-EEEECHHC T ss_conf 230004777531788832477-66401111 No 344 >cd05098 PTKc_FGFR1 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=94.21 E-value=0.027 Score=34.45 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=71.3 Q ss_pred EEECCCCCEEEEEEEEE---CCC------CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 10046681200179994---399------589998216699889---999999999985326775551001026778752 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT---SKG------TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t---~~~------~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) .+.|..|.--+.|+.+. ++. +..+|+........+ +-.++.+|..|.++ |.+++-. |. ..- T Consensus 23 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~~~~E~~~l~~l~~H----~nIv~l~-g~--~~~ 95 (307) T cd05098 23 GKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH----KNIINLL-GA--CTQ 95 (307) T ss_pred CCEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-EE--EEE T ss_conf 4698126671999999926776678703799999978768989999999999999851499----9870799-99--988 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 2451557864788707689989999999986436753-068754332311245645766752001552278899999998 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQK-TKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF 173 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~-~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 173 (316) .+..+.+++|++|.++.. . | +.. ..+......+...+.. ...+... ......+..-+.. T Consensus 96 ~~~~~lV~Ey~~~GsL~~-----~------L---~~~~~~~~~~~~~~~~~~~~-~l~~~~~-----~~~~~qia~gl~y 155 (307) T cd05098 96 DGPLYVIVEYASKGNLRE-----Y------L---RARRPPGMEYCYNPTQVPEE-QLSFKDL-----VSCAYQVARGMEY 155 (307) T ss_pred CCEEEEEEEECCCCCHHH-----H------H---HHCCCCCCCCCCCCCCCCCC-CCCHHHH-----HHHHHHHHHHHHH T ss_conf 998899998069999999-----9------9---86277642112465547212-3799999-----9999999999999 Q ss_pred HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 8876521077744402234642256279604873162135 Q gi|254780795|r 174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+ +++||.|+.+.|||++.+...-|.||+.|. T Consensus 156 LH~-------~~iiHRDLK~~NILl~~~~~~Ki~DFGla~ 188 (307) T cd05098 156 LAS-------KKCIHRDLAARNVLVTEDNVMKIADFGLAR 188 (307) T ss_pred HHH-------CCCCCCCCCCCCEEECCCCCEEEEEECCCC T ss_conf 984-------899678667020207689978971502232 No 345 >cd05116 PTKc_Syk Catalytic Domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio Probab=94.21 E-value=0.1 Score=30.71 Aligned_cols=131 Identities=19% Similarity=0.248 Sum_probs=65.8 Q ss_pred CCCEEEEEEE--EE-CCC-CEEEEEECCCC-CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 6812001799--94-399-58999821669-988---9999999999985326775551001026778752245155786 Q gi|254780795|r 32 HGVENSNFVI--QT-SKG-TFILTIYEKRM-NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS 103 (316) Q Consensus 32 ~G~~Ntny~v--~t-~~~-~yiLri~e~~~-~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~ 103 (316) .|.--+.|+- .. +.+ .+.+|++.... +.. ++..|+++|..|.. |.+++-- |- . ..+..+.+++ T Consensus 5 ~G~fG~V~~g~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~~E~~~l~~l~H-----pnIv~~~-g~--~-~~~~~~ivmE 75 (257) T cd05116 5 SGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDN-----PYIVRMI-GI--C-EAESWMLVME 75 (257) T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--E-ECCCEEEEEE T ss_conf 088809999899978999799999985356997999999999999986799-----9880588-99--9-5894799998 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 47887076899899999999864367530687543323112456457667520015522788999999988876521077 Q gi|254780795|r 104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP 183 (316) Q Consensus 104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp 183 (316) |.+|.++. ..|-+ ...+ ..... ..+...+...+..+.+ T Consensus 76 ~~~~g~L~-----------~~L~~----~~~~--------~~~~~------------~~~~~qia~gl~yLH~------- 113 (257) T cd05116 76 LAELGPLN-----------KFLQK----NKHV--------TEKNI------------TELVHQVSMGMKYLEE------- 113 (257) T ss_pred CCCCCCHH-----------HHHHH----CCCC--------CHHHH------------HHHHHHHHHHHHHHHH------- T ss_conf 58999999-----------99853----7999--------99999------------9999999999999986------- Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||+|+.+.|||++.+...-|.||+.+. T Consensus 114 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~ 143 (257) T cd05116 114 TNFVHRDLAARNVLLVTQHYAKISDFGLSK 143 (257) T ss_pred CCCCCCCCCHHHEEECCCCCEEEEECCCCE T ss_conf 893766167655888489978999747642 No 346 >KOG0583 consensus Probab=94.08 E-value=0.078 Score=31.48 Aligned_cols=32 Identities=41% Similarity=0.621 Sum_probs=27.3 Q ss_pred CCEEECCCCCCCEEECCC--CCEEEECCCCCCCCH Q ss_conf 744402234642256279--604873162135680 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNN--KIMGLIDFYFSCNDF 216 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~--~i~giIDF~~~~~~~ 216 (316) +|++|.|+.+.|+|++++ ++. ++||+.+.... T Consensus 139 ~gi~HRDLK~ENilld~~~~~~K-l~DFG~s~~~~ 172 (370) T KOG0583 139 RGIVHRDLKPENILLDGNEGNLK-LSDFGLSAISP 172 (370) T ss_pred CCCCCCCCCHHHEEECCCCCCEE-EEECCCCCCCC T ss_conf 59755657787733238888579-85378851357 No 347 >cd05089 PTKc_Tie1 Catalytic Domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. Probab=94.06 E-value=0.034 Score=33.83 Aligned_cols=150 Identities=19% Similarity=0.149 Sum_probs=69.5 Q ss_pred ECCCCCEEEEEEEEEC-CCC---EEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE Q ss_conf 0466812001799943-995---899982166998---899999999999853267755510010267787522451557 Q gi|254780795|r 29 PIIHGVENSNFVIQTS-KGT---FILTIYEKRMNE---KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANI 101 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~-~~~---yiLri~e~~~~~---~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L 101 (316) -|..|.--+.|+.... +|. ..+|+..+.... .++..|+++|..|.++ |.+++-. | ...-.+..+.+ T Consensus 9 ~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~H----pnIV~l~-g--~~~~~~~~~iV 81 (297) T cd05089 9 VIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHH----PNIINLL-G--ACENRGYLYIA 81 (297) T ss_pred EEEECCCCEEEEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-E--EECCCCEEEEE T ss_conf 995178959999999379809999999977335847899999999999871289----9888886-7--98239878999 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 86478870768998999999998643675306875-43323-11245645766752001552278899999998887652 Q gi|254780795|r 102 FSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFH-LYRKN-TLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179 (316) Q Consensus 102 ~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~-~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 179 (316) ++|.+|.++... |-+ ++....-+ ..+.. ......+...+ .....+...+..+. T Consensus 82 ~Ey~~~G~L~~~-----------l~~-~~~~~~~~~~~~~~~~~~~l~~~~~l---------~i~~qia~gl~yLH---- 136 (297) T cd05089 82 IEYAPYGNLLDF-----------LRK-SRVLETDPAFAKEHGTASTLTSQQLL---------QFASDVATGMQYLS---- 136 (297) T ss_pred EECCCCCCHHHH-----------HHH-CCCCCCCCHHHHHCCCCCCCCHHHHH---------HHHHHHHHHHHHHH---- T ss_conf 970599879999-----------973-56554461022203665778999999---------99999999999884---- Q ss_pred HCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 1077744402234642256279604873162135 Q gi|254780795|r 180 KNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 180 ~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+++||.|+.+.|||++++...-|.||+.|. T Consensus 137 ---~~~IiHRDLKp~NILl~~~~~~KI~DFGls~ 167 (297) T cd05089 137 ---EKQFIHRDLAARNVLVGENLASKIADFGLSR 167 (297) T ss_pred ---CCCCCCCCCCHHEEEECCCCCEEEEECCCCC T ss_conf ---0991557566422899899988980156786 No 348 >cd05054 PTKc_VEGFR Catalytic Domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto Probab=93.98 E-value=0.033 Score=33.91 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=25.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++++...-|-||+.|. T Consensus 192 ~~iiHRDLK~~NiLl~~~~~vKi~DFGlar 221 (337) T cd05054 192 RKCIHRDLAARNILLSENNVVKICDFGLAR 221 (337) T ss_pred CCEECCCCCHHHEEECCCCCEEEEECCCCC T ss_conf 891346365898778889989997263530 No 349 >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu Probab=93.69 E-value=0.045 Score=33.03 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=24.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++++...-|-||+.|. T Consensus 132 ~~ivHrDlKp~NiLl~~~~~~kl~DFGls~ 161 (273) T cd05035 132 RNFIHRDLAARNCMLREDMTVCVADFGLSK 161 (273) T ss_pred CCCCCCCCCHHEEEECCCCCEEEECCCCCE T ss_conf 992767676202889899978994178861 No 350 >cd05033 PTKc_EphR Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment Probab=93.65 E-value=0.58 Score=25.86 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=67.9 Q ss_pred ECCCCCEEEEEEEEEC-CC----CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE Q ss_conf 0466812001799943-99----58999821669988---9999999999985326775551001026778752245155 Q gi|254780795|r 29 PIIHGVENSNFVIQTS-KG----TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~-~~----~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316) -|..|.--+.|+..-. ++ ...+|+........ ++..|+.+|..|.. |.+++-. |- ..-.+..+. T Consensus 11 ~IG~G~fg~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~l~-g~--~~~~~~~~l 82 (266) T cd05033 11 VIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDH-----PNIIRLE-GV--VTKSRPVMI 82 (266) T ss_pred EEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--EEECCEEEE T ss_conf 993076839999999279965079999998865797899999999999984899-----7881199-99--968999999 Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521 Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316) Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316) +++|++|.++.. . |+.....+ . +.... .....+...+..+.+ T Consensus 83 V~Ey~~~GsL~~-----------~---L~~~~~~l--------~---~~~~~---------~i~~~ia~gl~yLH~---- 124 (266) T cd05033 83 ITEYMENGSLDK-----------F---LRENDGKF--------T---VGQLV---------GMLRGIASGMKYLSE---- 124 (266) T ss_pred EEECCCCCCHHH-----------H---HHHCCCCC--------C---HHHHH---------HHHHHHHHHHHHHHH---- T ss_conf 998589996999-----------9---97278999--------9---99999---------999999999998855---- Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 077744402234642256279604873162135 Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++||.|+.+.|||.+.+...-|-||+.+. T Consensus 125 ---~~ivHrDlK~~NILl~~~~~~Kl~DFGls~ 154 (266) T cd05033 125 ---MNYVHRDLAARNILVNSNLVCKVSDFGLSR 154 (266) T ss_pred ---CCEECCCCCCCEEEECCCCCEEEEECCCCE T ss_conf ---888705567213778799988996567775 No 351 >KOG0594 consensus Probab=93.60 E-value=0.11 Score=30.54 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=69.1 Q ss_pred EEEECCCCCEEEEEEEEE-CCCC-EEEEEEC---C-CCCHHHHHHHHHHHHHHHHCC-C-CCCCCCCCCHHHHHHHHCCC Q ss_conf 310046681200179994-3995-8999821---6-699889999999999985326-7-75551001026778752245 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQT-SKGT-FILTIYE---K-RMNEKDLPVFIELLHYISRNK-L-PCPIPIPRNDGKLYGFLCKK 97 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t-~~~~-yiLri~e---~-~~~~~~l~~~~~ll~~L~~~g-i-pvP~pi~~~~G~~~~~~~~k 97 (316) .++.|.+|.--+.|.... ..|+ ++||..+ + ..-....-.|+.+++.|+... + ..-..+.+.+. ..-.++ T Consensus 15 ~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~---~~~~~~ 91 (323) T KOG0594 15 KVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN---HRGIGK 91 (323) T ss_pred HHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCC---CCCCCE T ss_conf 99996799735899999806898799999862455668984146799999974777675777756750454---566635 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876 Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) -..+++|++=. +-+.+-.+-...++.+. ..-..+...|..-++++. T Consensus 92 l~lvfe~~d~D------------L~~ymd~~~~~~~g~~~--------------------~~ik~~m~Qll~gl~~~H-- 137 (323) T KOG0594 92 LYLVFEFLDRD------------LKKYMDSLPKKPQGLPP--------------------RLIKSFMRQLLRGLAFLH-- 137 (323) T ss_pred EEEEEEEECCC------------HHHHHHHCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHH-- T ss_conf 99999864350------------89999844665568988--------------------999999999999999998-- Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 521077744402234642256279604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+++|.|+.|.|+|++++...-++||+-|. T Consensus 138 -----~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAr 168 (323) T KOG0594 138 -----SHGILHRDLKPQNLLISSSGVLKLADFGLAR 168 (323) T ss_pred -----HCCEECCCCCCCEEEECCCCCEEEEECCHHH T ss_conf -----6782246687001788798868661044277 No 352 >KOG1164 consensus Probab=93.59 E-value=0.59 Score=25.80 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=74.4 Q ss_pred EEEEEECCCCCEEEEEEEEECCC---CEEEEEECC--CCCHHHHHHHHHHHHHHHH--CCCCCCCCCCCCHHHHHHHHCC Q ss_conf 05310046681200179994399---589998216--6998899999999999853--2677555100102677875224 Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQTSKG---TFILTIYEK--RMNEKDLPVFIELLHYISR--NKLPCPIPIPRNDGKLYGFLCK 96 (316) Q Consensus 24 ~~~~~~i~~G~~Ntny~v~t~~~---~yiLri~e~--~~~~~~l~~~~~ll~~L~~--~gipvP~pi~~~~G~~~~~~~~ 96 (316) ..-.+.|..|--.+.|.+.-.+. .+++++-.. ......+..+..++..|.. ..-.+|..+.. |. .-.+ T Consensus 20 ~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~--G~---~~~~ 94 (322) T KOG1164 20 YKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDH--GR---STED 94 (322) T ss_pred EEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEC--CC---CCCC T ss_conf 799877179998389999965888676899998631567764210599999987414577898857744--65---5786 Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 51557864788707689989999999986436753068754332311245645766752001552278899999998887 Q gi|254780795|r 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKE 176 (316) Q Consensus 97 k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 176 (316) ..+.||+-+ |. +...+ -+.+. .+.|.. ..+..+. ..+.+.+..+. T Consensus 95 ~~~iVM~l~-G~-----sL~dl-------~~~~~-~~~fs~--------~T~l~ia------------~q~l~~l~~lH- 139 (322) T KOG1164 95 FNFIVMSLL-GP-----SLEDL-------RKRNP-PGRFSR--------KTVLRIA------------IQNLNALEDLH- 139 (322) T ss_pred CCEEEEECC-CC-----CHHHH-------HHHCC-CCCCCC--------CHHHHHH------------HHHHHHHHHHH- T ss_conf 488999615-88-----99999-------97577-788783--------0399999------------99999999998- Q ss_pred HHHHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCC Q ss_conf 6521077744402234642256279-----604873162135 Q gi|254780795|r 177 SWPKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSC 213 (316) Q Consensus 177 ~~~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~ 213 (316) ..|+||.|+.|+|+.+... +..=+|||+.|. T Consensus 140 ------~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar 175 (322) T KOG1164 140 ------SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR 175 (322) T ss_pred ------HCCEECCCCCHHHEEECCCCCCCCCEEEEEECCCCC T ss_conf ------488343668767646225676655458897211451 No 353 >KOG0198 consensus Probab=93.43 E-value=0.63 Score=25.63 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=69.1 Q ss_pred ECCCCCEEEEEEEEECC-CCE-EEEEECCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 04668120017999439-958-99982166--998899999999999853267755510010267787522451557864 Q gi|254780795|r 29 PIIHGVENSNFVIQTSK-GTF-ILTIYEKR--MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~-~~y-iLri~e~~--~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) -|..|.--+.|..+..+ |.+ -.|..+.. ...+.|..++.+|..|. .|.+++-.......+- -....+++| T Consensus 24 ~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~-----~p~IV~~~G~~~~~~~-~~~~i~mEy 97 (313) T KOG0198 24 LLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLN-----HPNIVQYYGSSSSREN-DEYNIFMEY 97 (313) T ss_pred CCCCCCCEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCC-----CCCEEEECCCCCCCCC-EEEEEEEEC T ss_conf 1067665699999965777522565432024446788999999998479-----9878863785533567-066766530 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) ++|.++. ..+.+. .+ +++. ... ......+.+-+..+. .+ T Consensus 98 ~~~Gsl~-----------~~~~~~----g~-~l~E----------~~v--------~~ytr~iL~GL~ylH-------s~ 136 (313) T KOG0198 98 APGGSLS-----------DLIKRY----GG-KLPE----------PLV--------RRYTRQILEGLAYLH-------SK 136 (313) T ss_pred CCCCCHH-----------HHHHHC----CC-CCCH----------HHH--------HHHHHHHHHHHHHHH-------HC T ss_conf 4799289-----------999873----89-9987----------999--------999999999999997-------59 Q ss_pred CEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 4440223464225627-9604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) |++|.|+.++|+|+.. +...-+-||+-+. T Consensus 137 g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~ 166 (313) T KOG0198 137 GIVHCDIKPANILLDPSNGDVKLADFGLAK 166 (313) T ss_pred CEECCCCCCCEEEEECCCCCEEECCCCCCC T ss_conf 875057651307880799907962486234 No 354 >cd05043 PTK_Ryk Pseudokinase Domain of the Receptor related to tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It ac Probab=93.39 E-value=0.062 Score=32.13 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.1 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|+|+.+.|||++++...-|-||+-+. T Consensus 136 ~~ivHRDLK~~NiLl~~~~~vKi~DFGla~ 165 (280) T cd05043 136 RGVIHKDIAARNCVIDEELQVKITDNALSR 165 (280) T ss_pred CCEECCCCCCCCEEECCCCCEEEEECCCCE T ss_conf 993545125031699899978993054664 No 355 >cd05101 PTKc_FGFR2 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=93.13 E-value=0.048 Score=32.86 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=69.6 Q ss_pred EEECCCCCEEEEEEEEE---CC--C----CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH Q ss_conf 10046681200179994---39--9----589998216699889---999999999985326775551001026778752 Q gi|254780795|r 27 VQPIIHGVENSNFVIQT---SK--G----TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL 94 (316) Q Consensus 27 ~~~i~~G~~Ntny~v~t---~~--~----~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~ 94 (316) .+.|..|.--+.|+.+. ++ + ...+|+........+ +-.++.+|..|.++ |.+++-. |. ..- T Consensus 20 ~~~lG~G~FG~Vy~a~~~g~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~~l~~l~~H----pNIV~~~-g~--~~~ 92 (304) T cd05101 20 GKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH----KNIINLL-GA--CTQ 92 (304) T ss_pred CCEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEE-EE--EEE T ss_conf 3689316471999989806667777500699999978657989999999999999851489----9973799-99--998 Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 2451557864788707689989999999986436753068--75433231124564576675200155227889999999 Q gi|254780795|r 95 CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN--FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316) Q Consensus 95 ~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~--f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316) .+..+.+++|++|.++.. .|-.-...... +...+.+.. ...+.... .....+...+. T Consensus 93 ~~~~~iv~Ey~~~GsL~~-----------~l~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~-----~~~~qia~gl~ 151 (304) T cd05101 93 DGPLYVIVEYASKGNLRE-----------YLRARRPPGMEYSYDIARVPDE-----QMTFKDLV-----SCTYQVARGME 151 (304) T ss_pred CCEEEEEEECCCCCCHHH-----------HHHHCCCCCCCCCCHHHCCCCC-----CCCHHHHH-----HHHHHHHHHHH T ss_conf 998999998179998999-----------9986388642210011026422-----36899999-----99999999999 Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 88876521077744402234642256279604873162135 Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .+.+ +++||.|+.+.|||++++...-|-||+.|. T Consensus 152 yLH~-------~~iiHRDLK~~NiLl~~~~~~Ki~DFGla~ 185 (304) T cd05101 152 YLAS-------QKCIHRDLAARNVLVTENNVMKIADFGLAR 185 (304) T ss_pred HHHH-------CCCCCCCCCHHHEEECCCCCEEEEEEECCE T ss_conf 9974-------886578777788557589958985401120 No 356 >cd05100 PTKc_FGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to Probab=93.08 E-value=0.065 Score=31.98 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=25.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++++...-|-||+.|. T Consensus 153 ~~iiHRDLKp~NILl~~~~~vKI~DFGlar 182 (334) T cd05100 153 QKCIHRDLAARNVLVTEDNVMKIADFGLAR 182 (334) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCE T ss_conf 899778686122779899989998678870 No 357 >KOG0599 consensus Probab=93.02 E-value=0.17 Score=29.35 Aligned_cols=31 Identities=39% Similarity=0.760 Sum_probs=26.0 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +.++|.|+.|.|||.+++.-.-+-||+++|. T Consensus 142 ~~IVHRDLKpENILlddn~~i~isDFGFa~~ 172 (411) T KOG0599 142 RNIVHRDLKPENILLDDNMNIKISDFGFACQ 172 (411) T ss_pred HHHHHCCCCHHHEEECCCCCEEEECCCEEEC T ss_conf 4344223686456431566358732540212 No 358 >KOG1152 consensus Probab=92.99 E-value=0.14 Score=29.84 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=29.5 Q ss_pred HHCC-CCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 2107-77444022346422562796048731621356 Q gi|254780795|r 179 PKNL-PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 179 ~~~L-p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) ++.| -+|++|.|....||+++++...-+|||+-+.+ T Consensus 683 i~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~ 719 (772) T KOG1152 683 IKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAY 719 (772) T ss_pred CCCCCCCCCEECCCCCCCEEEECCCEEEEEECCCHHH T ss_conf 1012325723024565547982687389864263554 No 359 >KOG1187 consensus Probab=92.93 E-value=0.2 Score=28.81 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=82.0 Q ss_pred CCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCC-EEEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 89999999998489986053100466812001799943995-89998216699--8899999999999853267755510 Q gi|254780795|r 7 PPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGT-FILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPI 83 (316) Q Consensus 7 ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~-yiLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi 83 (316) .+-+||..--..|.-..++. .|---+.|+-...+|+ ..+|....... ..+...++.++..+...++ | ..+ T Consensus 65 fs~~el~~AT~~Fs~~~~ig-----~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ev~~ls~l~H~Nl-v-~Ll 137 (361) T KOG1187 65 FSYDELRKATNNFSESNLIG-----EGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNL-V-KLL 137 (361) T ss_pred EEHHHHHHHHHCCCHHHEEE-----ECCCEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-C-CEE T ss_conf 40999999973677311399-----4588778999968980899998246677433879999999843898684-5-388 Q ss_pred CCCHHHHHHHHCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH Q ss_conf 0102677875224-515578647887076899899999999864367530687543323112456457667520015522 Q gi|254780795|r 84 PRNDGKLYGFLCK-KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED 162 (316) Q Consensus 84 ~~~~G~~~~~~~~-k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~ 162 (316) | +. .-.+ .++.+|+|++..++. -.||..... ...|...+. T Consensus 138 ----G-yC-~e~~~~~~LVYEym~nGsL~--------------d~L~~~~~~----------~L~W~~R~k--------- 178 (361) T KOG1187 138 ----G-YC-LEGGEHRLLVYEYMPNGSLE--------------DHLHGKKGE----------PLDWETRLK--------- 178 (361) T ss_pred ----E-EE-ECCCCCEEEEEECCCCCCHH--------------HHHCCCCCC----------CCCHHHHHH--------- T ss_conf ----8-88-16998158999568999889--------------985578888----------989899999--------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHH Q ss_conf 7889999999888765210777444022346422562796048731621356800 Q gi|254780795|r 163 LKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL 217 (316) Q Consensus 163 ~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~ 217 (316) +.-.+...+.++. ...+..+||+|+.+.|||.+.+-..-|-||+.|..++. T Consensus 179 Ia~g~A~gL~yLH----~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~ 229 (361) T KOG1187 179 IALGAARGLAYLH----EGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPE 229 (361) T ss_pred HHHHHHHHHHHHC----CCCCCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCC T ss_conf 9999988999872----68999878797789996078899768365656502675 No 360 >COG3570 StrB Streptomycin 6-kinase [Defense mechanisms] Probab=92.90 E-value=0.75 Score=25.11 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=82.6 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCC-CHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99999853267755510010267787522451557864788707-----689-989999999986436753068754332 Q gi|254780795|r 67 ELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL-----NHI-SDIHCEEIGSMLASMHQKTKNFHLYRK 140 (316) Q Consensus 67 ~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~-----~~~-~~~~~~~lG~~La~lH~~~~~f~~~r~ 140 (316) .+|..-. |.-+.+++.- +|+ +.|+++..|... ..- +.+..+-+.+.++++|.--.+.+ + T Consensus 57 ~ll~ww~--G~Gaarvla~-d~~---------alLlEra~~~rsl~~l~~~G~Dd~aTrIac~a~~rlh~Prp~pp---p 121 (274) T COG3570 57 DLLAWWD--GIGAARVLAQ-DDN---------ALLLERAGGERSLDVLVRDGNDDAATRIACEALARLHAPRPSPP---P 121 (274) T ss_pred HHHHHHH--CCCCCHHHCC-CCC---------HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC---C T ss_conf 5666650--6771001215-761---------78887605640389998707833899999999999608999989---5 Q ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC Q ss_conf 3112-456457667520015522788999999988876521077744402234642256279604873162135680001 Q gi|254780795|r 141 NTLS-PLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY 219 (316) Q Consensus 141 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~ 219 (316) .... ..|...++.+... +..+.-.-...-..+.. .|.+ ....|||+|.+|||=-+.+=.=+||=- --+|.+.| T Consensus 122 ~L~pL~~wf~sLf~~a~~--d~~i~v~aA~~A~~LL~-~p~d--i~pLHGDlHH~Nild~~~rGWlvIDPk-gl~Gdrg~ 195 (274) T COG3570 122 ELLPLERWFESLFRKARQ--DGSIYVEAARAAQTLLD-TPRD--IRPLHGDLHHGNILDGDRRGWLVIDPK-GLIGDRGF 195 (274) T ss_pred CCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHC-CCCC--CCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCC T ss_conf 556489999999877764--27700269999999864-8664--656766444543146886751787654-44586552 Q ss_pred CHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 989999864311-688878788999998876418899899999999999999 Q gi|254780795|r 220 DLSICINAWCFD-ENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAA 270 (316) Q Consensus 220 DLAi~i~~~c~~-~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aa 270 (316) |.| |-+|-- .+-...+.+...-++=....--+++ ...+...+..++ T Consensus 196 D~A---Nlf~Np~~~~~~~pgRi~rqlai~a~a~~l~p--~rLlqw~~Ay~g 242 (274) T COG3570 196 DYA---NLFCNPLDDLALAPGRIARQLAIFAHALGLDP--RRLLQWAIAYGG 242 (274) T ss_pred CHH---HHHCCCCHHHHHCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH T ss_conf 267---65248864530081889999999999846698--999999999711 No 361 >KOG0903 consensus Probab=92.89 E-value=0.42 Score=26.75 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=51.9 Q ss_pred ECCCCCCCEEECC-CCCEEEECCCCCCCC---HHHCCHHH---HHHHHHHCCCCCCCHHHH---H-HHHHHHHHC----- Q ss_conf 0223464225627-960487316213568---00019899---998643116888787889---9-999887641----- Q gi|254780795|r 188 HADLFPDNVLFYN-NKIMGLIDFYFSCND---FLMYDLSI---CINAWCFDENNTYNPSRG---F-SILNGYNKV----- 251 (316) Q Consensus 188 HgDl~~~NiL~~~-~~i~giIDF~~~~~~---~~i~DLAi---~i~~~c~~~~~~~d~~~~---~-~~l~gY~~v----- 251 (316) =-|=|.+|||.+. +.|. -|||++.-.+ ..-|+-|- +--+ .+--|.++.+.+ + -+++||.+. T Consensus 699 vKDRHNGNILiD~EGHII-HIDFGFmLsnsPgnvgFEsAPFKLT~Ey--lEvmgG~~~d~FdyfK~L~l~gf~a~RKhad 775 (847) T KOG0903 699 VKDRHNGNILIDEEGHII-HIDFGFMLSNSPGNVGFESAPFKLTTEY--LEVMGGLDSDMFDYFKSLMLQGFMALRKHAD 775 (847) T ss_pred CCCCCCCCEEECCCCCEE-EEEEEEEECCCCCCCCCCCCCHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 212457735763788779-9863467248998765113741637999--9996587478999999999999999998789 Q ss_pred ---------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf ---------------------------------8899899999999999999999999999876088 Q gi|254780795|r 252 ---------------------------------RKISENELQSLPTLLRGAALRFFLTRLYDSQNMP 285 (316) Q Consensus 252 ---------------------------------rpLs~~E~~~l~~ll~~aalRf~lsrl~d~~~~~ 285 (316) -.||+++...+-..+.-.+++=|-||+||.+..- T Consensus 776 rIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~kS~~S~~TrlYD~fQyi 842 (847) T KOG0903 776 RIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLISKSLDSITTRLYDSFQYI 842 (847) T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 9999999961568886324675999999998542542999999999998611010334343788988 No 362 >KOG0192 consensus Probab=92.61 E-value=0.42 Score=26.78 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=23.8 Q ss_pred EEECCCCCCCEEECCCC-CEEEECCCCCC Q ss_conf 44022346422562796-04873162135 Q gi|254780795|r 186 IIHADLFPDNVLFYNNK-IMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~~~~-i~giIDF~~~~ 213 (316) +||.|+.+.|+|++.+. ..-|=||+-+. T Consensus 164 iIHrDLK~~NiLv~~~~~~~KI~DFGlsr 192 (362) T KOG0192 164 IIHRDLKSDNILVDLKGKTLKIADFGLSR 192 (362) T ss_pred EEEEECCCCCEEECCCCCEEEECCCCCCH T ss_conf 78743585427774888878879888775 No 363 >cd05102 PTKc_VEGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V Probab=92.45 E-value=0.096 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=25.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+.+.|||++.+...-|-||+.|. T Consensus 193 ~~iiHRDLK~~NiLl~~~~~vKi~DFGlsr 222 (338) T cd05102 193 RKCIHRDLAARNILLSENNVVKICDFGLAR 222 (338) T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 892346688686998899988983354651 No 364 >KOG0983 consensus Probab=92.43 E-value=0.4 Score=26.92 Aligned_cols=30 Identities=40% Similarity=0.624 Sum_probs=24.9 Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 774440223464225627-9604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) ..|+||.|..|+|||+++ ++|. +-||+-++ T Consensus 210 KH~viHRDvKPSNILlDe~GniK-lCDFGIsG 240 (391) T KOG0983 210 KHGVIHRDVKPSNILLDERGNIK-LCDFGISG 240 (391) T ss_pred HCCEEECCCCCCCEEECCCCCEE-EECCCCCC T ss_conf 42515435672316773679877-61044441 No 365 >KOG0659 consensus Probab=92.42 E-value=0.72 Score=25.24 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=25.2 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) ..++|.|+.|+|+|+..+.+.-+=||+-++. T Consensus 120 ~~IlHRDlKPnNLLis~~g~lKiADFGLAr~ 150 (318) T KOG0659 120 KWILHRDLKPNNLLISSDGQLKIADFGLARF 150 (318) T ss_pred HHHHCCCCCCCCEEECCCCCEEEECCCCHHC T ss_conf 2100135770006776888687500242000 No 366 >KOG0612 consensus Probab=92.17 E-value=0.38 Score=27.04 Aligned_cols=28 Identities=43% Similarity=0.635 Sum_probs=13.5 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCC Q ss_conf 74440223464225627-960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~ 212 (316) .|.||.|..|||||.+. |.|. +=|||-| T Consensus 194 mgyVHRDiKPDNvLld~~GHik-LADFGsC 222 (1317) T KOG0612 194 MGYVHRDIKPDNVLLDKSGHIK-LADFGSC 222 (1317) T ss_pred CCCEECCCCCCEEEECCCCCEE-ECCCHHH T ss_conf 1510135784405763668675-2210567 No 367 >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity Probab=91.96 E-value=0.4 Score=26.89 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=22.2 Q ss_pred CCEEECCCCCCCEEECCCC--------CEEEECCCCCC Q ss_conf 7444022346422562796--------04873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNK--------IMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~--------i~giIDF~~~~ 213 (316) +++||+|+.+.|||++.+. +.-+.||+.+. T Consensus 119 ~~iiHrDlK~~NiLl~~~~~~k~~~~~~~kl~DfG~s~ 156 (258) T cd05078 119 KGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI 156 (258) T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCE T ss_conf 89877856766388846677443675541322788760 No 368 >KOG1989 consensus Probab=91.93 E-value=0.99 Score=24.34 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=74.4 Q ss_pred ECCCCCEEEEEEEEECCC--CEEEE-EECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-CC---CC Q ss_conf 046681200179994399--58999-8216699889---999999999985326775551001026778752-24---51 Q gi|254780795|r 29 PIIHGVENSNFVIQTSKG--TFILT-IYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL-CK---KP 98 (316) Q Consensus 29 ~i~~G~~Ntny~v~t~~~--~yiLr-i~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~-~~---k~ 98 (316) -|++|==-..|.+.+.++ +|+|| +|-. ++.. +..|++.|+-|+.+.=-| ..+-+ ..+... ++ .. T Consensus 44 vLAEGGFa~VYla~~~~~~~~~AlKrm~~~--de~~L~~v~~EI~~MK~L~gh~nIV-~yids---s~~~~~~~~~~~Ev 117 (738) T KOG1989 44 VLAEGGFAQVYLAQDVKGGKKYALKRMYVN--DEEALNAVKREIDIMKLLSGHKNIV-SYIDS---SAINRSSNNGVWEV 117 (738) T ss_pred EECCCCCEEEEEEEECCCCCEEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCEE-EEECC---CCCCCCCCCCEEEE T ss_conf 971477279999885388861565431038--7889999999999999824897644-67315---42230578853688 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) ..||+|.+|..+- --+-.+++.. |. ..+..+.+....+.+... T Consensus 118 llLmEyC~gg~Lv----------d~mn~Rlq~~---lt-----------------------e~eVLkIf~dv~~AVa~m- 160 (738) T KOG1989 118 LLLMEYCKGGSLV----------DFMNTRLQTR---LT-----------------------EDEVLKIFYDVCEAVAAM- 160 (738) T ss_pred EEEHHHCCCCCHH----------HHHHHHHHCC---CC-----------------------HHHHHHHHHHHHHHHHHH- T ss_conf 7434243798599----------9999987536---77-----------------------378999999999999998- Q ss_pred HHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC Q ss_conf 21077744402234642256279604873162135680001 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY 219 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~ 219 (316) ..++--+||.|+..-|||...+.-.-+=||+-||.-.... T Consensus 161 -H~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~ 200 (738) T KOG1989 161 -HYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSP 200 (738) T ss_pred -HCCCCCCCHHHHHHHHEEECCCCCEEECCCCCCCCCCCCC T ss_conf -6379862000000120477689978857566666656787 No 369 >cd05036 PTKc_ALK_LTK Catalytic Domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic lymphoma kinase (ALK) and Leukocyte tyrosine (tyr) kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well Probab=91.89 E-value=0.1 Score=30.69 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=24.0 Q ss_pred CCEEECCCCCCCEEECC---CCCEEEECCCCCC Q ss_conf 74440223464225627---9604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN---NKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~---~~i~giIDF~~~~ 213 (316) .+++|+|+.+.|||++. +.+.-|.||+.+. T Consensus 135 ~~ivHrDlKp~NiLl~~~g~~~~~Ki~DFGls~ 167 (277) T cd05036 135 NHFIHRDIAARNCLLTCKGPGRVAKIADFGMAR 167 (277) T ss_pred CCCCCCCCCHHHEEEECCCCCCEEEEEECCCCC T ss_conf 991568775562899068998558999767741 No 370 >COG4320 Uncharacterized protein conserved in bacteria [Function unknown] Probab=91.77 E-value=0.5 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.0 Q ss_pred ECCCCCCCCHHHCCHH Q ss_conf 3162135680001989 Q gi|254780795|r 207 IDFYFSCNDFLMYDLS 222 (316) Q Consensus 207 IDF~~~~~~~~i~DLA 222 (316) =|||....++++.||- T Consensus 85 ~DFDe~~~g~~~~Dlv 100 (410) T COG4320 85 ADFDEGHLGQYIWDLV 100 (410) T ss_pred CCCCHHHCCCHHHHHH T ss_conf 3454333062389999 No 371 >KOG0585 consensus Probab=91.57 E-value=0.12 Score=30.28 Aligned_cols=30 Identities=37% Similarity=0.590 Sum_probs=25.4 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +|+||+|..|+|+|..++..+-|=||+-++ T Consensus 229 QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~ 258 (576) T KOG0585 229 QGIIHRDIKPSNLLLSSDGTVKISDFGVSN 258 (576) T ss_pred CCEECCCCCHHHEEECCCCCEEEECCCEEE T ss_conf 472015666433577588858860351144 No 372 >TIGR02569 TIGR02569_actnb conserved hypothetical protein TIGR02569; InterPro: IPR013402 This entry has so far only been found in Actinobacteria, including at least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica - always in a single copy per genome. The function is unknown.. Probab=91.43 E-value=0.075 Score=31.60 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=110.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHH---CCC Q ss_conf 899999999999853267755510010267787522451557864788707689--989999999986436753---068 Q gi|254780795|r 60 KDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHI--SDIHCEEIGSMLASMHQK---TKN 134 (316) Q Consensus 60 ~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~--~~~~~~~lG~~La~lH~~---~~~ 134 (316) +.-.+--++=+.|.-.|+.|.+||++.||.++.. | +.--+|.+|..-+.. +..-.-+|.++++++|.= +++ T Consensus 43 ~rsaWSarvRetL~p~GvRvvRP~rSTDGRyvva--G--WRA~~F~~Gt~~~RvDE~VvAalRL~~Al~d~~~Prfltq~ 118 (279) T TIGR02569 43 ERSAWSARVRETLKPDGVRVVRPVRSTDGRYVVA--G--WRADTFEAGTLEKRVDETVVAALRLDEALADLEAPRFLTQD 118 (279) T ss_pred HHHCCCHHHCCCCCCCCEEEEECCCCCCCCEEEC--C--CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCC T ss_conf 1201302320234647457850241158754431--4--41131146888777550001522165566410587112467 Q ss_pred CCCCCCCCCC------HHHHHHHH--------HHHHHCCCHHH--HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEE Q ss_conf 7543323112------45645766--------75200155227--88999999988876521077744402234642256 Q gi|254780795|r 135 FHLYRKNTLS------PLNLKFLW--------AKCFDKVDEDL--KKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLF 198 (316) Q Consensus 135 f~~~r~~~~~------~~~~~~~~--------~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~ 198 (316) +...+...+ ...|.+.= .......++.. ...|...+..+.+ |-+-|.++.|||++-. +|| T Consensus 119 -p~~~~~~~DvF~~AD~~aWee~Pl~~~~~~~~~~~~~~~P~~lt~~~L~~~i~~Ll~--pi~~pnQv~HaDm~aT-~ly 194 (279) T TIGR02569 119 -PVAEWAEIDVFVAADRAAWEERPLVSVPVGVDTAAVALDPQRLTSIDLLNKIAELLK--PIKSPNQVVHADMYAT-TLY 194 (279) T ss_pred -CCCCHHHCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHH-HHH T ss_conf -888712114666741411567884542788875211037266789999999988620--0256532001467889-874 Q ss_pred CCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 27960487316213568000198999986431168887878899999887641889989999999999999999999999 Q gi|254780795|r 199 YNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRL 278 (316) Q Consensus 199 ~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~ll~~aalRf~lsrl 278 (316) .|++--||-|. --..-|.-|==|+||.|-. .-|.-|.. +|+=|+. |.+-|. ++| |=++=|+ T Consensus 195 aGt~pP~vTDl-vpv~RP~g~tAav~iVDaL--l~GAvDeG----ii~Rfsh---lpe~~Q----llL-----RAl~fR~ 255 (279) T TIGR02569 195 AGTQPPAVTDL-VPVLRPAGYTAAVAIVDAL--LLGAVDEG----IIERFSH---LPEIEQ----LLL-----RALLFRL 255 (279) T ss_pred CCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH--HHHHHHHH----HHHHHHH---CCCCHH----HHH-----HHHHHHH T ss_conf 07887931103-3462450255567886666--65114432----7888652---467258----999-----9999999 Q ss_pred HHHHHCCCH Q ss_conf 987608851 Q gi|254780795|r 279 YDSQNMPCN 287 (316) Q Consensus 279 ~d~~~~~~~ 287 (316) --+-++|.+ T Consensus 256 av~alhp~s 264 (279) T TIGR02569 256 AVYALHPRS 264 (279) T ss_pred HHHHHCCCC T ss_conf 998727777 No 373 >KOG0984 consensus Probab=91.35 E-value=0.57 Score=25.91 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=50.2 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 74440223464225627-96048731621356800019899998643116--8887878899999887641889989999 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWCFDE--NNTYNPSRGFSILNGYNKVRKISENELQ 260 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~--~~~~d~~~~~~~l~gY~~vrpLs~~E~~ 260 (316) .++||.|..|+|||.+. ++|. +-||+-++ ++.--+|.++-+-|--. ...++++.-++ ||.-.. +-.. T Consensus 168 L~vIHRDvKPsNiLIn~~GqVK-iCDFGIsG--~L~dSiAkt~daGCkpYmaPEri~~e~n~~---gY~vks----DvWS 237 (282) T KOG0984 168 LSVIHRDVKPSNILINYDGQVK-ICDFGISG--YLVDSIAKTMDAGCKPYMAPERINPELNQK---GYSVKS----DVWS 237 (282) T ss_pred HHHHHCCCCCCEEEECCCCCEE-ECCCCCCE--EEHHHHHHHHHCCCCCCCCHHHCCCCCCCC---CCEEEH----HHHH T ss_conf 6561034785507885689688-70144442--652456777754897667821247555756---530101----0454 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780795|r 261 SLPTLLRGAALRF 273 (316) Q Consensus 261 ~l~~ll~~aalRf 273 (316) +=-.++-+|-+|| T Consensus 238 LGItmiElA~lr~ 250 (282) T KOG0984 238 LGITMIEMAILRF 250 (282) T ss_pred HHHHHHHHHHCCC T ss_conf 2113541312045 No 374 >cd05037 PTK_Jak_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki Probab=91.28 E-value=0.57 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=21.9 Q ss_pred CCEEECCCCCCCEEECCCCC-------EEEECCCCCC Q ss_conf 74440223464225627960-------4873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKI-------MGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i-------~giIDF~~~~ 213 (316) +++||+|+.+.|||+.+... ..+-||+.+. T Consensus 120 ~~iiHrDlK~~NILl~~~~~~~~~~~~~kl~Dfg~~~ 156 (259) T cd05037 120 KKLVHGNVCGKNILLAREGLNEGCVPFIKLSDPGIPI 156 (259) T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCC T ss_conf 9951677651148970578765545414743577553 No 375 >KOG0670 consensus Probab=91.10 E-value=0.53 Score=26.11 Aligned_cols=31 Identities=42% Similarity=0.679 Sum_probs=25.2 Q ss_pred CCEEECCCCCCCEEECCCC-CEEEECCCCCCC Q ss_conf 7444022346422562796-048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNK-IMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~-i~giIDF~~~~~ 214 (316) .|++|+|..|||+|++.++ +.-+-||+-|.. T Consensus 555 c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~ 586 (752) T KOG0670 555 CGVLHADIKPDNILVNESKNILKLCDFGSASF 586 (752) T ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCCC T ss_conf 49323145766367516756343236765010 No 376 >cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole Probab=90.93 E-value=1.2 Score=23.69 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=38.4 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCCC-CH---HHCCHH-----HHHHHHHHCCCCCCCHH---HHH-HHHHHHHHCC Q ss_conf 40223464225627-96048731621356-80---001989-----99986431168887878---899-9998876418 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN-DF---LMYDLS-----ICINAWCFDENNTYNPS---RGF-SILNGYNKVR 252 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~-~~---~i~DLA-----i~i~~~c~~~~~~~d~~---~~~-~~l~gY~~vr 252 (316) ==||=|.+|+|++. +++. -|||++... +| .-+|-| --+... + +|..+.+ +++ -..+||..+| T Consensus 163 gIgDRHndNIml~~~Ghlf-HIDFGfil~~~pg~~~k~E~aPFkLt~emv~v-m--GG~~~s~~f~~F~~lc~~af~~lR 238 (311) T cd05167 163 QIKDRHNGNIMIDDDGHII-HIDFGFIFEISPGGNLKFESAPFKLTKEMVQI-M--GGSMEATPFKWFVELCVRAFLAVR 238 (311) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCEECCHHHHHH-H--CCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 1566578844598999799-97405540567788888688984337999998-6--899776789999999999999999 Q ss_pred CCCHHHHHHHHH Q ss_conf 899899999999 Q gi|254780795|r 253 KISENELQSLPT 264 (316) Q Consensus 253 pLs~~E~~~l~~ 264 (316) +=+..=+..+.. T Consensus 239 k~~~~ii~L~~l 250 (311) T cd05167 239 PYMDEIVSLVEL 250 (311) T ss_pred HHHHHHHHHHHH T ss_conf 989999999999 No 377 >KOG0660 consensus Probab=90.74 E-value=0.13 Score=30.06 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=26.4 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCCC Q ss_conf 74440223464225627960487316213568 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCND 215 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~ 215 (316) .++||.|+.|+|++.+.+.-.-|-||+.|... T Consensus 144 AnViHRDLKPsNll~n~~c~lKI~DFGLAR~~ 175 (359) T KOG0660 144 ANVIHRDLKPSNLLLNADCDLKICDFGLARYL 175 (359) T ss_pred CCCCCCCCCHHHEEECCCCCEEECCCCCEEEC T ss_conf 66034556644525526788785366531322 No 378 >KOG0575 consensus Probab=90.68 E-value=0.57 Score=25.90 Aligned_cols=30 Identities=33% Similarity=0.518 Sum_probs=25.0 Q ss_pred CCEEECCCCCCCEEECCC-CCEEEECCCCCCC Q ss_conf 744402234642256279-6048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316) .++||.|+..+|++.+++ +|. |=||+-|+. T Consensus 137 ~~IiHRDLKLGNlfL~~~~~VK-IgDFGLAt~ 167 (592) T KOG0575 137 LGIIHRDLKLGNLFLNENMNVK-IGDFGLATQ 167 (592) T ss_pred CCCEECCCCHHHEEECCCCCEE-ECCCCEEEE T ss_conf 5703224422120135767577-625401456 No 379 >cd05106 PTKc_CSF-1R Catalytic Domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-stimulating factor-1 receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti Probab=90.36 E-value=0.21 Score=28.66 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=26.3 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+-..|||++++.+.-|=||+.|. T Consensus 231 ~~iIHRDLaarNiLv~~~~~vKIaDFGLsr 260 (374) T cd05106 231 KNCIHRDVAARNVLLTDGRVAKICDFGLAR 260 (374) T ss_pred CCEECCCCCHHEEEECCCCCEEEEECCCCC T ss_conf 892327677401898689829995361010 No 380 >PRK09902 hypothetical protein; Provisional Probab=90.21 E-value=1.4 Score=23.29 Aligned_cols=201 Identities=8% Similarity=0.038 Sum_probs=87.9 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEEC-CCCCEEEEEEEEECCCCEEEEEECCCC--------CHHHHHHHHHHHHH Q ss_conf 965770899999999984899860531004-668120017999439958999821669--------98899999999999 Q gi|254780795|r 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPI-IHGVENSNFVIQTSKGTFILTIYEKRM--------NEKDLPVFIELLHY 71 (316) Q Consensus 1 MaVyt~ls~~el~~il~~y~lg~~~~~~~i-~~G~~Ntny~v~t~~~~yiLri~e~~~--------~~~~l~~~~~ll~~ 71 (316) |+|-+ ..++.+.+.+.= |+..+---- -+|. ...+.+..+...|.+|-=.++. .+.-.-.|...+.. T Consensus 1 ~~~~~--~~~~Fd~~W~~~--g~wVEePN~rRgGw-SGV~rl~~~g~~~Y~KRQ~nHl~rSl~hP~G~PTf~RE~~~i~~ 75 (216) T PRK09902 1 MAVSA--KHDEFNHWWATE--GDWVEEPNYRRNGM-SGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKE 75 (216) T ss_pred CCCCC--CHHHHHHHHHCC--CCCCCCCCCCCCCC-CEEEEEEECCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHH T ss_conf 97661--053799998288--86205887778875-41389960895799997147522001067888409999999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH Q ss_conf 85326775551001026778752245155786-47887076899899999999864367530687543323112456457 Q gi|254780795|r 72 ISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS-FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKF 150 (316) Q Consensus 72 L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~-~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~ 150 (316) |.+.|||||.++.- | .-..-++..+.|++ -++|- .+.+.... T Consensus 76 l~~lgI~v~~~vf~--~-~rk~~g~~rAiLVT~aL~Gf----~~Ld~w~a------------------------------ 118 (216) T PRK09902 76 LERAGVIVPKIVFG--E-AVKIEGEWRALLVTEDMAGF----ISIADWYA------------------------------ 118 (216) T ss_pred HHHCCCCCCHHHHH--H-HHCCCCCEEEEEEECCCCCC----CCHHHHHH------------------------------ T ss_conf 99759982143665--5-10357846899986445676----30899973------------------------------ Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC--CCCEEEECCCCCCCCHHHCCHHHHHHHH Q ss_conf 66752001552278899999998887652107774440223464225627--9604873162135680001989999864 Q gi|254780795|r 151 LWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN--NKIMGLIDFYFSCNDFLMYDLSICINAW 228 (316) Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~~~~~i~DLAi~i~~~ 228 (316) .. ......+.....+...+......... .++-||=+.|.-|++.. +--.++||+|-+-..-...--|. .|+ T Consensus 119 ~~--~~~~~~~~~~~~~L~~~a~~l~rlH~---~~~qHgclYpKHIFvr~~g~~e~aLIDLEK~R~rL~~~~Aa~--~Dl 191 (216) T PRK09902 119 QH--AVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAIN--HDF 191 (216) T ss_pred CC--CCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCEEEEECCCCCCEEEEEHHHHCHHHHHHHHHH--HHH T ss_conf 33--41214799999999999999999986---783346775216999606873168867654021343778988--669 Q ss_pred H--HCCCCCCCHHHHHHHHHHHHH Q ss_conf 3--116888787889999988764 Q gi|254780795|r 229 C--FDENNTYNPSRGFSILNGYNK 250 (316) Q Consensus 229 c--~~~~~~~d~~~~~~~l~gY~~ 250 (316) - ......++..-++.+..+|.. T Consensus 192 ~QL~rh~~~~~~~dw~~~~~~y~~ 215 (216) T PRK09902 192 RQLEKYLEPIPKADWEQVKAYYYA 215 (216) T ss_pred HHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 999975468998899999999832 No 381 >KOG0598 consensus Probab=90.21 E-value=0.44 Score=26.62 Aligned_cols=136 Identities=21% Similarity=0.319 Sum_probs=70.7 Q ss_pred EEEECCCCCEEEEEEEEECC-C-CEEEEEECCCC--CHHHH---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 31004668120017999439-9-58999821669--98899---999999999853267755510010267787522451 Q gi|254780795|r 26 SVQPIIHGVENSNFVIQTSK-G-TFILTIYEKRM--NEKDL---PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 26 ~~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~~~--~~~~l---~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) -++-|..|.=-..|+|.-.+ + -|-+|+-+++. ...+. -.|-.+| .+ +..|-.+... +-++-.++- T Consensus 29 ~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL---~~--v~hPFiv~l~---ysFQt~~kL 100 (357) T KOG0598 29 ILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNIL---SK--IKHPFIVKLI---YSFQTEEKL 100 (357) T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH---HH--CCCCCEEEEE---EECCCCCEE T ss_conf 465662167745899998365746317555266752012688889999999---71--6788474127---861258737 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 557864788707689989999999986436753068-7543323112456457667520015522788999999988876 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKN-FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~-f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316) +.|.+|+.|..+ . .|..-++ |+- .... -...+|.-.+..+.+ T Consensus 101 ylVld~~~GGeL--------------f--~hL~~eg~F~E--------~~ar------------fYlaEi~lAL~~LH~- 143 (357) T KOG0598 101 YLVLDYLNGGEL--------------F--YHLQREGRFSE--------DRAR------------FYLAEIVLALGYLHS- 143 (357) T ss_pred EEEEECCCCCCH--------------H--HHHHHCCCCCH--------HHHH------------HHHHHHHHHHHHHHH- T ss_conf 999954688519--------------9--99975277435--------5789------------999999999999986- Q ss_pred HHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 52107774440223464225627-9604873162135 Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) +|+||.|+.|.|||.+. +.|. +-||+-|- T Consensus 144 ------~gIiyRDlKPENILLd~~GHi~-LtDFgL~k 173 (357) T KOG0598 144 ------KGIIYRDLKPENILLDEQGHIK-LTDFGLCK 173 (357) T ss_pred ------CCEEECCCCHHHEEECCCCCEE-EECCCCCH T ss_conf ------7903135888995666888689-82166540 No 382 >cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with Probab=90.16 E-value=1.1 Score=24.11 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=20.6 Q ss_pred EEECCCCCCCEEECC--CCCEEEECCCCC Q ss_conf 440223464225627--960487316213 Q gi|254780795|r 186 IIHADLFPDNVLFYN--NKIMGLIDFYFS 212 (316) Q Consensus 186 ~IHgDl~~~NiL~~~--~~i~giIDF~~~ 212 (316) +-=||=|++|+|++. |++. -|||+.| T Consensus 183 lGlGDRH~~NILi~~~tG~vv-HIDFg~~ 210 (280) T cd05169 183 LGLGDRHPSNIMIDRLTGKVI-HIDFGDC 210 (280) T ss_pred EECCCCCCCCEEEECCCCCEE-EEECHHH T ss_conf 131689864379986878789-9841665 No 383 >cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. Probab=90.14 E-value=1.5 Score=23.25 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=20.5 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 40223464225627-9604873162135 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) ==||=|.+|+|++. +++. -|||++.- T Consensus 142 gigDRHn~NILl~~~Ghl~-HIDFGfil 168 (289) T cd00893 142 QIKDRHNGNILLDSDGHII-HIDFGFIL 168 (289) T ss_pred CCCCCCCCCEEECCCCEEE-EEEEHHHH T ss_conf 2576578855787888199-98602330 No 384 >KOG1167 consensus Probab=90.13 E-value=0.36 Score=27.19 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC Q ss_conf 8899999999999853267755510010267787522451557864788 Q gi|254780795|r 59 EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG 107 (316) Q Consensus 59 ~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G 107 (316) ...+.-|+++|..|..+.-- .++ ......++.-+.+++|++- T Consensus 78 p~ri~~El~~L~~~gG~~ni--~~~-----~~~~rnnd~v~ivlp~~~H 119 (418) T KOG1167 78 PSRILNELEMLYRLGGSDNI--IKL-----NGCFRNNDQVAIVLPYFEH 119 (418) T ss_pred CHHHHHHHHHHHHHCCCHHH--HCC-----HHHHCCCCEEEEEECCCCC T ss_conf 23889999999985240020--010-----3331268813798426675 No 385 >cd05107 PTKc_PDGFR_beta Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D Probab=90.06 E-value=0.19 Score=28.95 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.6 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+-..|||++++.+.-|=||+.+. T Consensus 258 ~~iiHRDLaarNiLv~~~~~~KIaDFGlar 287 (401) T cd05107 258 KNCVHRDLAARNVLICEGKLVKICDFGLAR 287 (401) T ss_pred CCCCCCCCCCCEEEECCCCCEEECCCEEEE T ss_conf 787254466043897489938968361003 No 386 >cd05105 PTKc_PDGFR_alpha Catalytic Domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- Probab=89.95 E-value=0.2 Score=28.81 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=26.6 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+-..|||++.+.+.-|=||+.+. T Consensus 256 ~~iIHRDLaarNiLv~~~~~~KIaDFGLsr 285 (400) T cd05105 256 KNCVHRDLAARNVLLAQGKIVKICDFGLAR 285 (400) T ss_pred CCCCCCCCCCCEEEECCCCEEEECCCCCEE T ss_conf 784646577042897689918979662202 No 387 >KOG1151 consensus Probab=89.23 E-value=0.57 Score=25.90 Aligned_cols=29 Identities=45% Similarity=0.639 Sum_probs=22.2 Q ss_pred CEEECCCCCCCEEECCCCCEE---EECCCCCC Q ss_conf 444022346422562796048---73162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMG---LIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~g---iIDF~~~~ 213 (316) -+||-|+.|+|||..++...| |-||+.+- T Consensus 590 PIIHYDLKPgNILLv~GtacGeIKITDFGLSK 621 (775) T KOG1151 590 PIIHYDLKPGNILLVNGTACGEIKITDFGLSK 621 (775) T ss_pred CEEEECCCCCCEEEECCCCCCEEEEECCCHHH T ss_conf 70452167762798537633416763042244 No 388 >PRK09188 serine/threonine protein kinase; Provisional Probab=89.18 E-value=1.7 Score=22.78 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=25.0 Q ss_pred CCCEEEEECCCCCCC--CCC--CHHHHHHHHHHHHHHHHHC Q ss_conf 451557864788707--689--9899999999864367530 Q gi|254780795|r 96 KKPANIFSFIKGSPL--NHI--SDIHCEEIGSMLASMHQKT 132 (316) Q Consensus 96 ~k~~~L~~~i~G~~~--~~~--~~~~~~~lG~~La~lH~~~ 132 (316) |+.+.+-+|++|..+ ..| +..-.++.-++|-+||.++ T Consensus 91 d~~~L~R~~~~G~~l~la~P~gd~a~frsA~r~Lr~lhRaG 131 (365) T PRK09188 91 GKDGLVRGWIEGVPLHLARPHGDPKWFRSAHRALRDLHRAG 131 (365) T ss_pred CCCCEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 76300101104752101699886799999999999999706 No 389 >KOG0665 consensus Probab=89.13 E-value=0.21 Score=28.68 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=26.6 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .|+||.||.|.|+++..+...-|.||+.+.. T Consensus 137 ~~IihRdLkPsnivv~~~~~lKi~dfg~ar~ 167 (369) T KOG0665 137 AGIIHRDLKPSNIVVNSDCTLKILDFGLART 167 (369) T ss_pred CCEEECCCCCCCCEECCHHHEEECCCHHHCC T ss_conf 2514335676441414632056423011021 No 390 >cd05076 PTK_Tyk2_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt Probab=89.12 E-value=0.85 Score=24.78 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC-------EEEECCCCCC Q ss_conf 99999998887652107774440223464225627960-------4873162135 Q gi|254780795|r 166 EIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKI-------MGLIDFYFSC 213 (316) Q Consensus 166 ~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i-------~giIDF~~~~ 213 (316) .+..-+.++.+ +++||+|+.+.|||.+...+ .-+-||+.+. T Consensus 125 ~ia~gl~YLH~-------~~iiHRDlk~~NiLl~~~~~~~~~~~~vKi~DfG~s~ 172 (274) T cd05076 125 QLASALSYLED-------KNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSF 172 (274) T ss_pred HHHHHHHHHHH-------CCCCCCCCCHHHEEECCCCCCCCCCCCEEECCCCCCC T ss_conf 99999999852-------8956776556445221335455667713742787663 No 391 >cd05077 PTK_Jak1_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom Probab=88.94 E-value=1.1 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC-------EEEECCCCC Q ss_conf 899999998887652107774440223464225627960-------487316213 Q gi|254780795|r 165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKI-------MGLIDFYFS 212 (316) Q Consensus 165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i-------~giIDF~~~ 212 (316) ..+...+..+.+ +++||+|+.+.|||...+.+ .-+-||+.+ T Consensus 112 ~~ia~gl~yLH~-------~~iiHrDlk~~NiLl~~~~~~~~~~~~~KlsDfG~~ 159 (262) T cd05077 112 KQLASALSYLED-------KDLVHGNVCTKNILLAREGIDTEGGPFIKLSDPGIP 159 (262) T ss_pred HHHHHHHHHHHH-------CCCCCCCCCHHHEEEECCCCCCCCCCCEEECCCCCC T ss_conf 999999999983-------994377434300788234555545773696158887 No 392 >cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. Probab=88.59 E-value=1 Score=24.20 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=46.8 Q ss_pred CHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 800019899-----998643116888787889999988764188998999999-----999999999999999998 Q gi|254780795|r 215 DFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD 280 (316) Q Consensus 215 ~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d 280 (316) |.++||... .+|.+|+.-..+-+-+++.+-=++|....+||++|++++ .-||+..+--|+|..+.. T Consensus 1 GT~~Fd~~~srkGY~LN~fc~sl~~~~nRe~F~ade~Ay~d~~~Lt~eqk~aV~~RD~~~ll~~Ggniyyl~Kl~a 76 (106) T cd07925 1 GTTLFDGEMARKGYALNKMCFSFNDAANREAFLADEEAYCEKFGLTPEQKQAVRNRDVLRMLEAGGNIYYLAKLAG 76 (106) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9815678999860489999999777988999982999999876999999999997369999990663999999999 No 393 >cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. Probab=88.58 E-value=1 Score=24.22 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=46.8 Q ss_pred CHHHCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 80001989-----9998643116888787889999988764188998999999-----999999999999999998 Q gi|254780795|r 215 DFLMYDLS-----ICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD 280 (316) Q Consensus 215 ~~~i~DLA-----i~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d 280 (316) |.++||.+ ..+|.+|+.-..+-+-+++.+-=++|....+||++|++++ ..||+..+--|+|..+.. T Consensus 1 GTy~Fd~~~srkGY~LN~fc~sl~~~~nRe~F~ade~Ay~d~~~Lt~eqk~aV~~RD~~~ll~~Ggniyyl~Kl~a 76 (106) T cd07921 1 GTYVFDAERSRKGYALNKMCMSLNKAENREAFKADEEAYCDKFGLTEEQKQAVLDRDWLRLLELGGNIYYLLKLAA 76 (106) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9815688999750389999999777988999981999999876999999999997369999990663999999999 No 394 >KOG2345 consensus Probab=88.30 E-value=0.58 Score=25.86 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=26.6 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCCCCHH Q ss_conf 444022346422562796048731621356800 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFL 217 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~ 217 (316) ...|+|+.|+|||+.+....-++||+-++-.+. T Consensus 149 ~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i 181 (302) T KOG2345 149 PYAHRDIKPANILLSDSGLPVLMDLGSATQAPI 181 (302) T ss_pred CCCCCCCCCCEEEECCCCCEEEEECCCCCCCCE T ss_conf 310157773316744899647985367651556 No 395 >KOG0658 consensus Probab=88.17 E-value=0.31 Score=27.58 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=23.6 Q ss_pred CCEEECCCCCCCEEECCC-CCEEEECCCCC Q ss_conf 744402234642256279-60487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNN-KIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~-~i~giIDF~~~ 212 (316) .|+||.|+.|.|+|++.+ .+.-|=||+-| T Consensus 144 ~~IcHRDIKPqNlLvD~~tg~LKicDFGSA 173 (364) T KOG0658 144 HGICHRDIKPQNLLVDPDTGVLKICDFGSA 173 (364) T ss_pred CCCCCCCCCHHEEEECCCCCEEEECCCCCC T ss_conf 582037787011888178884885267761 No 396 >PRK13377 protocatechuate 4,5-dioxygenase subunit alpha; Provisional Probab=87.98 E-value=1.1 Score=24.02 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=48.2 Q ss_pred CCHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 6800019899-----998643116888787889999988764188998999999-----999999999999999998 Q gi|254780795|r 214 NDFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD 280 (316) Q Consensus 214 ~~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d 280 (316) -|..+||.+. .+|.+|+.-..+-+-+++.+-=++|....+||++|+.++ -.||+..+--|+|..+.. T Consensus 11 PGTyvFd~~~srkGY~LN~fc~SL~~~~nRe~F~aDe~AY~d~~~Lteeqk~aV~~RD~~~li~lGgniyyl~Kl~a 87 (129) T PRK13377 11 PGTTIFDADMSRKGYHLNQFCMSLMKAENRARFKADERAYLDEWPMTEEQKQAVLARDLNRCIALGGNIYFLAKIGA 87 (129) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99825799999873799999999767989999981999999876999999999997379999992673999999999 No 397 >KOG0663 consensus Probab=87.93 E-value=1.6 Score=22.94 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=25.4 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC-CCHH Q ss_conf 44402234642256279604873162135-6800 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC-NDFL 217 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~-~~~~ 217 (316) .++|.|+.++|+|..+..+.-|=||+-|. ++.. T Consensus 197 wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp 230 (419) T KOG0663 197 WILHRDLKTSNLLLSHKGILKIADFGLAREYGSP 230 (419) T ss_pred EEEECCCCHHHEEECCCCCEEECCCCCHHHHCCC T ss_conf 0574256431222116884776143203432587 No 398 >cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Probab=87.59 E-value=1.1 Score=23.93 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=47.9 Q ss_pred CCHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 6800019899-----998643116888787889999988764188998999999-----999999999999999998 Q gi|254780795|r 214 NDFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD 280 (316) Q Consensus 214 ~~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d 280 (316) -|.++||.+. .+|.+|+.-..+-+-+++.+-=++|....|||++|++++ --||+..+-=|+|..+.. T Consensus 8 PGTyvFd~~~srkGY~LN~fc~sL~~~~nRe~F~ade~Ay~d~~~Lteeqk~aV~~RD~~~li~lGgniyyl~Klaa 84 (121) T cd07924 8 PGTYVFDAERARKGYHLNQFCMSLMKAENRERFKADERAYLDKWPMTEEQKQAVLARDYNRMLALGGNIYYLAKIGA 84 (121) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99814689999885799999999767988999983999999876999999999997479999992682999999999 No 399 >KOG0600 consensus Probab=87.43 E-value=1 Score=24.21 Aligned_cols=31 Identities=29% Similarity=0.562 Sum_probs=27.0 Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) -+|++|.|+...|+|.+++.+.-|=||+-|. T Consensus 236 ~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr 266 (560) T KOG0600 236 SRGVLHRDIKGSNILIDNNGVLKIADFGLAR 266 (560) T ss_pred HCCEEECCCCCCCEEECCCCCEEECCCCCEE T ss_conf 4583103465020678588977762444322 No 400 >PRK09897 hypothetical protein; Provisional Probab=87.30 E-value=2.2 Score=22.06 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999999752117851 Q gi|254780795|r 299 ILKTRFHKQISSISEY 314 (316) Q Consensus 299 ~~~~~~~~~~~~~~~~ 314 (316) ..++|.|..++...+| T Consensus 351 y~llrLhe~v~~iv~~ 366 (535) T PRK09897 351 YVILRLHEAVQEIVPH 366 (535) T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999988888502210 No 401 >PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional Probab=87.21 E-value=1.3 Score=23.67 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=46.7 Q ss_pred CHHHCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHH Q ss_conf 80001989-----9998643116888787889999988764188998999999-----999999999999999998 Q gi|254780795|r 215 DFLMYDLS-----ICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYD 280 (316) Q Consensus 215 ~~~i~DLA-----i~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d 280 (316) |.++||.. ..+|.+|+.-..+-+-+++.+-=++|....+||++|+.++ ..||+..+--|+|..+.. T Consensus 12 GTyvFd~~~srkGY~LN~fc~Sl~~~~nRe~F~ade~AY~d~~~Lteeqr~aV~~RD~~~ll~lGgniyyl~Klaa 87 (117) T PRK13378 12 GTTIFDGEQARKGYALNKMCFSFNDAANRAAFLADEAAYCRKYGLNEEQKEAIRNRDVLQLLAAGGNAYYLAKFAG 87 (117) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9826799999873699999999667999999982999999876999999999997379999994674999999999 No 402 >KOG0584 consensus Probab=87.15 E-value=0.57 Score=25.88 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC--CCEEEECCCCC Q ss_conf 8999999988876521077744402234642256279--60487316213 Q gi|254780795|r 165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN--KIMGLIDFYFS 212 (316) Q Consensus 165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~--~i~giIDF~~~ 212 (316) +.|..-+.++....| - +||.|+..|||+++|+ +|. |=|.+-| T Consensus 150 RQILkGL~yLHs~~P----P-IIHRDLKCDNIFinG~~G~VK-IGDLGLA 193 (632) T KOG0584 150 RQILKGLVYLHSQDP----P-IIHRDLKCDNIFVNGNLGEVK-IGDLGLA 193 (632) T ss_pred HHHHHHHHHHHCCCC----C-CCCCCCCCCEEEECCCCCCEE-ECCHHHH T ss_conf 999987666505799----8-211344353378707847456-4302689 No 403 >KOG1236 consensus Probab=87.06 E-value=0.49 Score=26.32 Aligned_cols=75 Identities=27% Similarity=0.338 Sum_probs=39.5 Q ss_pred CEEECCCCCCCEEEC----CCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------C Q ss_conf 444022346422562----796048731621356800019899998643116888787889999988764---------1 Q gi|254780795|r 185 GIIHADLFPDNVLFY----NNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNK---------V 251 (316) Q Consensus 185 g~IHgDl~~~NiL~~----~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~---------v 251 (316) .++|+|+||+||+.. .+...|++|=+-+ +..--+| .||.... .|.......+-+|.- + T Consensus 365 NFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~--~~i~~~L-----~~~~~e~--~d~~~~~~~~~~~~P~lvflDtGiv 435 (565) T KOG1236 365 NFVHADLHPGNVLIRFNKTEDNLRGVHKAEKA--SAIKRGL-----EWFRSEV--RDARFTDSPDLEYEPTLVFLDTGIV 435 (565) T ss_pred CCEECCCCCCCEEEEECCCCCCCCCCCCCHHH--HHHHHHH-----HHHHHHH--HHHHHHCCCCCCCCCEEEEECCHHH T ss_conf 00112457774799854787543333220356--6776435-----6545566--5333212653468874999523054 Q ss_pred CCCCHHHHHHHHHHHHH Q ss_conf 88998999999999999 Q gi|254780795|r 252 RKISENELQSLPTLLRG 268 (316) Q Consensus 252 rpLs~~E~~~l~~ll~~ 268 (316) -.|++.-...+-.+-++ T Consensus 436 ~kLs~qn~~N~l~lF~a 452 (565) T KOG1236 436 TKLSHQNQMNLLSLFRA 452 (565) T ss_pred HCCCHHHHHHHHHHHHH T ss_conf 40471418879999999 No 404 >cd05104 PTKc_Kit Catalytic Domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce Probab=86.60 E-value=0.46 Score=26.50 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++||.|+-..|||+..+.+.-|=||+-+. T Consensus 233 ~~~iHrDLaaRNvlv~~~~~~Ki~DFGlsr 262 (375) T cd05104 233 KNCIHRDLAARNILLTHGRITKICDFGLAR 262 (375) T ss_pred CCCCCCCCCCCCEEECCCCCEEECCCCCCE T ss_conf 890436157462566699918979762212 No 405 >KOG0193 consensus Probab=86.39 E-value=0.92 Score=24.56 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.2 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCCCC Q ss_conf 74440223464225627-960487316213568 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCND 215 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~ 215 (316) +.+||-||...||+.++ ++|. |=||+-+..- T Consensus 507 K~IIHrDLKSnNIFl~~~~kVk-IgDFGLatvk 538 (678) T KOG0193 507 KNIIHRDLKSNNIFLHEDLKVK-IGDFGLATVK 538 (678) T ss_pred HHHHHHHCCCCCEEECCCCCEE-EECCCCEEEE T ss_conf 3144311022646870588489-8313204542 No 406 >PTZ00267 NIMA-related protein kinase; Provisional Probab=86.32 E-value=0.39 Score=26.94 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=25.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ++++|.|+.+.|||.+.+.+.-+-||+.+- T Consensus 188 ~~IlHRDLK~~NIfL~~~G~IKLGDFGiSK 217 (478) T PTZ00267 188 RKMMHRDLKSANIFLMPTGIIKLGDFGFSK 217 (478) T ss_pred CCCCCCCCCHHHEEECCCCCEEECCCCCCE T ss_conf 793316576888567689988873563322 No 407 >KOG3653 consensus Probab=86.25 E-value=1.2 Score=23.81 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=46.5 Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHHCCCCCHHHHH Q ss_conf 7744402234642256279604873162135680001989999864311688878788--99999887641889989999 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR--GFSILNGYNKVRKISENELQ 260 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~--~~~~l~gY~~vrpLs~~E~~ 260 (316) ..++.|.|+...|||++.|--..|=||+.|-.=..-..-.-+++ .-|+ .+ +-.+|+|=-..+. +.-.+ T Consensus 334 Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~-----qVGT---~RYMAPEvLEgainl~d--~~Afk 403 (534) T KOG3653 334 KPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHG-----QVGT---RRYMAPEVLEGAINLQD--RDAFK 403 (534) T ss_pred CCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCCCCCCCHHH-----HHHH---HHHCCHHHHHHHCCCCC--HHHHH T ss_conf 98633345553536880577478622540477458988761132-----2213---32038888730214666--77888 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHH Q ss_conf 99999999999999--99999876 Q gi|254780795|r 261 SLPTLLRGAALRFF--LTRLYDSQ 282 (316) Q Consensus 261 ~l~~ll~~aalRf~--lsrl~d~~ 282 (316) .+-++.- +|=+| +||--|.. T Consensus 404 r~DvYam--gLVLWEi~SRC~~~~ 425 (534) T KOG3653 404 RIDVYAM--GLVLWEIASRCTDAD 425 (534) T ss_pred HHHHHHH--HHHHHHHHHHCCCCC T ss_conf 8779999--999999986153246 No 408 >KOG0668 consensus Probab=85.44 E-value=0.86 Score=24.73 Aligned_cols=30 Identities=37% Similarity=0.629 Sum_probs=24.7 Q ss_pred CCCEEECCCCCCCEEECC--CCCEEEECCCCCC Q ss_conf 774440223464225627--9604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN--NKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~--~~i~giIDF~~~~ 213 (316) .+|++|.|..|.||+.+. .++ -+|||+-|. T Consensus 150 S~GImHRDVKPhNvmIdh~~rkL-rlIDWGLAE 181 (338) T KOG0668 150 SMGIMHRDVKPHNVMIDHELRKL-RLIDWGLAE 181 (338) T ss_pred HCCCCCCCCCCCEEEECHHHCEE-EEEECCHHH T ss_conf 51701156774203444334403-445433486 No 409 >KOG0671 consensus Probab=85.38 E-value=2.5 Score=21.75 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=24.0 Q ss_pred CEEECCCCCCCEEECCC---------------------CCEEEECCCCCCCCHH Q ss_conf 44402234642256279---------------------6048731621356800 Q gi|254780795|r 185 GIIHADLFPDNVLFYNN---------------------KIMGLIDFYFSCNDFL 217 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~---------------------~i~giIDF~~~~~~~~ 217 (316) +++|-|+.|.||||-.. .| -||||+-|..+.. T Consensus 212 kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I-~vIDFGsAtf~~e 264 (415) T KOG0671 212 KLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAI-KVIDFGSATFDHE 264 (415) T ss_pred CEEECCCCHHHEEEECCCEEEEECCCCCCCEECCCCCCCE-EEEECCCCCCCCC T ss_conf 6035378710078852532787526775210015677645-8885487521046 No 410 >KOG1163 consensus Probab=84.78 E-value=3 Score=21.21 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=76.6 Q ss_pred CCCEEEEEECCCCCEEEEEEEE-ECCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 9860531004668120017999-439958-99982166998899999999999853267755510010267787522451 Q gi|254780795|r 21 IGQLNSVQPIIHGVENSNFVIQ-TSKGTF-ILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKP 98 (316) Q Consensus 21 lg~~~~~~~i~~G~~Ntny~v~-t~~~~y-iLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~ 98 (316) .|+..-++.|..|+--.-|.-. ..+|+- .+|+=.++....+|.+|-.+-..|+. |+-.|... .+.+-+.-. T Consensus 14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~-g~GiP~i~------~y~~e~~yn 86 (341) T KOG1163 14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQG-GVGIPHIR------HYGTEKDYN 86 (341) T ss_pred CCCEEEEEEECCCCHHHHEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCC-CCCCCHHH------HHCCCCCCC T ss_conf 04279998616885323102210267866999971255788630678999998626-89983121------113445555 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55786478870768998999999998643675306875433231124564576675200155227889999999888765 Q gi|254780795|r 99 ANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESW 178 (316) Q Consensus 99 ~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316) +.+|.-+. |+.+.+..+ +++.|... ...-+.++.+..++-. T Consensus 87 vlVMdLLG------PsLEdLfnf---------C~R~ftmk-----------------------TvLMLaDQml~RiEyv- 127 (341) T KOG1163 87 VLVMDLLG------PSLEDLFNF---------CSRRFTMK-----------------------TVLMLADQMLSRIEYV- 127 (341) T ss_pred EEEEHHCC------CCHHHHHHH---------HHHHHHHH-----------------------HHHHHHHHHHHHHHHH- T ss_conf 55410218------539999998---------75301478-----------------------6999999999999999- Q ss_pred HHCCCCCEEECCCCCCCEEEC----CCCCEEEECCCCCC Q ss_conf 210777444022346422562----79604873162135 Q gi|254780795|r 179 PKNLPTGIIHADLFPDNVLFY----NNKIMGLIDFYFSC 213 (316) Q Consensus 179 ~~~Lp~g~IHgDl~~~NiL~~----~~~i~giIDF~~~~ 213 (316) + .+++||.|..|||.|.- -+++. +|||+-+- T Consensus 128 --H-~r~fiHRDIKPdNFLMGlgrh~~kl~-LIDFGLaK 162 (341) T KOG1163 128 --H-LRNFIHRDIKPDNFLMGLGRHCNKLY-LIDFGLAK 162 (341) T ss_pred --H-HHCCCCCCCCCCCEEECCCCCCCEEE-EEECCCHH T ss_conf --8-72410056784200231222455489-99624123 No 411 >KOG1006 consensus Probab=84.52 E-value=0.76 Score=25.07 Aligned_cols=42 Identities=31% Similarity=0.531 Sum_probs=29.2 Q ss_pred CEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHHHHHHHHH Q ss_conf 4440223464225627-96048731621356800019899998643 Q gi|254780795|r 185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLSICINAWC 229 (316) Q Consensus 185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLAi~i~~~c 229 (316) -+||.|..|+|||.+. +.|. +-||+-|+. ++--+|.+.-+-| T Consensus 188 kiIHRDvKPSNILldr~G~vK-LCDFGIcGq--Lv~SiAkT~daGC 230 (361) T KOG1006 188 KIIHRDVKPSNILLDRHGDVK-LCDFGICGQ--LVDSIAKTVDAGC 230 (361) T ss_pred HHHHCCCCHHHEEEECCCCEE-EECCCCHHH--HHHHHHHHHCCCC T ss_conf 565045772126770679876-515633076--7777776403687 No 412 >KOG1027 consensus Probab=84.48 E-value=0.67 Score=25.46 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=23.1 Q ss_pred CCEEECCCCCCCEEECC----CCCEEEE-CCCCCC Q ss_conf 74440223464225627----9604873-162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN----NKIMGLI-DFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~----~~i~giI-DF~~~~ 213 (316) .+++|.|+.|.|||+.. +++.+.| ||+-|- T Consensus 625 l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsK 659 (903) T KOG1027 625 LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSK 659 (903) T ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCC T ss_conf 25210467873489971478862568960465201 No 413 >PRK00029 hypothetical protein; Validated Probab=84.37 E-value=3.1 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=19.4 Q ss_pred CCCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 77744402234642256279604873162135 Q gi|254780795|r 182 LPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 182 Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..-|+|||=+|.||+-+.|.. ||++=|+ T Consensus 241 ~~vGFvHGVmNTDNmsI~GeT----iDYGP~a 268 (487) T PRK00029 241 QAVGFVHGVMNTDNMSILGET----FDYGPYG 268 (487) T ss_pred HHHCCCCCCCCCCCCEEEEEE----CCCCCCH T ss_conf 986220451236886001342----3677601 No 414 >KOG0666 consensus Probab=84.29 E-value=1.5 Score=23.16 Aligned_cols=146 Identities=17% Similarity=0.262 Sum_probs=73.8 Q ss_pred HHHHHCCCCCEEEEEECCCCCEEEEEEEE-ECC-----CCEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99984899860531004668120017999-439-----9589998216699----8899999999999853267755510 Q gi|254780795|r 14 SFVQEYAIGQLNSVQPIIHGVENSNFVIQ-TSK-----GTFILTIYEKRMN----EKDLPVFIELLHYISRNKLPCPIPI 83 (316) Q Consensus 14 ~il~~y~lg~~~~~~~i~~G~~Ntny~v~-t~~-----~~yiLri~e~~~~----~~~l~~~~~ll~~L~~~gipvP~pi 83 (316) +.|..|++ +..|..|.--..|+-. ++. ..|.+|.|+...+ ..-.-.|+.|+..|+..++-+-. T Consensus 21 e~l~~ye~-----ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv-- 93 (438) T KOG0666 21 EDLFEYEG-----IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLV-- 93 (438) T ss_pred HHHHHHHC-----CCEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHH-- T ss_conf 88876303-----23124665412566200568753321668988725567787189999999999875287610066-- Q ss_pred CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 01026778752245155786478870768998999999998643675306875433231124564576675200155227 Q gi|254780795|r 84 PRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL 163 (316) Q Consensus 84 ~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 163 (316) +.+.+.+.+-+.+++|.|- ++.+ +-++|..+++-..++ .-. T Consensus 94 -----~Vfl~~d~~v~l~fdYAEh---------DL~~----II~fHr~~~~~~lp~---------------------~mv 134 (438) T KOG0666 94 -----KVFLSHDKKVWLLFDYAEH---------DLWH----IIKFHRASKAKQLPR---------------------SMV 134 (438) T ss_pred -----HHHHCCCCEEEEEEHHHHH---------HHHH----HHHHHCCCHHCCCCH---------------------HHH T ss_conf -----7762267449998214440---------6999----998742310023888---------------------899 Q ss_pred HHHH---HHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCC Q ss_conf 8899---9999988876521077744402234642256279-----604873162135 Q gi|254780795|r 164 KKEI---DHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSC 213 (316) Q Consensus 164 ~~~l---~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~ 213 (316) ++.+ .+-+..+.++| ++|.|+.|.|||+-++ +| -|=|++.+. T Consensus 135 KsilwQil~Gv~YLH~NW-------vlHRDLKPaNIlvmgdgperG~V-KIaDlGlaR 184 (438) T KOG0666 135 KSILWQILDGVHYLHSNW-------VLHRDLKPANILVMGDGPERGRV-KIADLGLAR 184 (438) T ss_pred HHHHHHHHHHHHHHHHCC-------EEECCCCCCEEEEECCCCCCCEE-EEECCCHHH T ss_conf 999999973367876320-------11336771107995357766726-861311788 No 415 >COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning] Probab=83.82 E-value=0.58 Score=25.86 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=38.1 Q ss_pred EEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHH---H--HHHHCCCCC--CCHHH-HHHHHHH-HHHCCCCCH Q ss_conf 4402234642256279604873162135680001989999---8--643116888--78788-9999988-764188998 Q gi|254780795|r 186 IIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICI---N--AWCFDENNT--YNPSR-GFSILNG-YNKVRKISE 256 (316) Q Consensus 186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i---~--~~c~~~~~~--~d~~~-~~~~l~g-Y~~vrpLs~ 256 (316) +=|.|++.+|+|.++++|+ +|||-.|...+ +=+++. + -|.|...+. |+.-+ ++.++.| ..+-.|.|. T Consensus 343 fehrnlt~~niLId~Gnvt-LIDfklsRl~~---~q~~isy~rldhp~lF~G~dd~QFeIYrlMr~l~~g~wa~F~P~TN 418 (488) T COG5072 343 FEHRNLTLDNILIDEGNVT-LIDFKLSRLSY---SQGIISYNRLDHPDLFNGVDDYQFEIYRLMRRLLKGRWAQFEPITN 418 (488) T ss_pred CCCCCCCCCCEEEECCCEE-EEEEEEEECCC---CCCEEECCCCCCHHHHCCCCCEEEEHHHHHHHHHCCCHHHCCCCHH T ss_conf 6324565332234058548-99866530246---8760210025765663676634564999999982574776000214 No 416 >KOG0197 consensus Probab=83.55 E-value=1.5 Score=23.13 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=47.0 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC---CHH-HC---CHHH------HHHH---------HHH----------- Q ss_conf 7444022346422562796048731621356---800-01---9899------9986---------431----------- Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN---DFL-MY---DLSI------CINA---------WCF----------- 230 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~---~~~-i~---DLAi------~i~~---------~c~----------- 230 (316) +++||.||-.-|||++++.+.-|=||+-|-. +.+ .- ++-| |+++ |.| T Consensus 322 ~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G 401 (468) T KOG0197 322 KNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYG 401 (468) T ss_pred CCCCCHHHHHHHEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHCCCCCCCCEEEHHHHHHHHHCCC T ss_conf 78122003466556456866987466355215887146337887871135887874387510154221244677776058 Q ss_pred --CCCCCCCHHHHHHHHHHHHHCCC-CCHHHHHH Q ss_conf --16888787889999988764188-99899999 Q gi|254780795|r 231 --DENNTYNPSRGFSILNGYNKVRK-ISENELQS 261 (316) Q Consensus 231 --~~~~~~d~~~~~~~l~gY~~vrp-Ls~~E~~~ 261 (316) -..+.-+.+-.+.+=+||.=-|| +-++|+-. T Consensus 402 ~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~ 435 (468) T KOG0197 402 RVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYE 435 (468) T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH T ss_conf 8899997789999998666768999999989999 No 417 >KOG0586 consensus Probab=83.36 E-value=1.5 Score=23.16 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=24.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+||.||+..|+|.+.+...-|=||+++. T Consensus 174 k~ivHrdLk~eNilL~~~mnikIaDfgfS~ 203 (596) T KOG0586 174 KNIVHRDLKAENILLDENMNIKIADFGFST 203 (596) T ss_pred CCEECCCCCHHHCCCCCCCCEEEECCCCCE T ss_conf 144346553654244554551451244310 No 418 >cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac Probab=82.33 E-value=3.3 Score=20.92 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=26.0 Q ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCC--CCCCHHH Q ss_conf 17999439958999821669988999999999998532-6775551--0010267 Q gi|254780795|r 38 NFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIP--IPRNDGK 89 (316) Q Consensus 38 ny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~p--i~~~~G~ 89 (316) -.+|+|++|-.|+|..-. ...+ .+ ...|+.. |+|+|+. ++..+++ T Consensus 15 ~~Fv~s~~g~iVvK~s~t--ia~E--~y---~~~L~~~Lgv~~Pq~R~l~~~s~E 62 (238) T cd05124 15 ALFVESESGAIVVKSSPN--IASE--YF---LSKLAKILGLPIPQMRVLEWNSSE 62 (238) T ss_pred EEEEECCCCEEEEECCCC--HHHH--HH---HHHHHHHHCCCCCCEEEECCCCHH T ss_conf 899975886799973773--5799--99---999999859999825865056878 No 419 >KOG0661 consensus Probab=82.28 E-value=2.4 Score=21.86 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=51.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC---CHHHCCHHHHHHHHHH-----C-- Q ss_conf 27889999999888765210777444022346422562796048731621356---8000198999986431-----1-- Q gi|254780795|r 162 DLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN---DFLMYDLSICINAWCF-----D-- 231 (316) Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~---~~~i~DLAi~i~~~c~-----~-- 231 (316) .++..+.+.+.-+... . ..|+-|.|+.|.|+|+.++.+.-|=||+-|.. .+..-|-.- .-|-. - T Consensus 111 ~irnim~QilqGL~hi-H---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVS--TRWYRAPEvLLrs 184 (538) T KOG0661 111 DIRNIMYQILQGLAHI-H---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVS--TRWYRAPEVLLRS 184 (538) T ss_pred HHHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHEEECCCCEEEECCCCCCCCCCCCCCCCHHHH--CCCCCCHHHHHHC T ss_conf 9999999999888899-8---62853256875446753644367503443222346898402320--2101361776423 Q ss_pred --CCCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHH Q ss_conf --68887878899999887641889--989999999999 Q gi|254780795|r 232 --ENNTYNPSRGFSILNGYNKVRKI--SENELQSLPTLL 266 (316) Q Consensus 232 --~~~~~d~~~~~~~l~gY~~vrpL--s~~E~~~l~~ll 266 (316) .....|.=-+..++.---+.||| -..|.+.|+-+| T Consensus 185 ~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc 223 (538) T KOG0661 185 GYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKIC 223 (538) T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 665772278988889999987046689971789999999 No 420 >KOG0664 consensus Probab=82.01 E-value=0.8 Score=24.96 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=27.6 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .++.|.|..|+|+|++.|.|.-|-||+-+.. T Consensus 175 A~ILHRDIKPGNLLVNSNCvLKICDFGLARv 205 (449) T KOG0664 175 ANILHRDIKPGNLLVNSNCILKICDFGLART 205 (449) T ss_pred CCHHHCCCCCCCEEECCCCEEEECCCCCCCC T ss_conf 1233236787637761673588525543210 No 421 >KOG0694 consensus Probab=82.00 E-value=3.1 Score=21.18 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=29.0 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCCCCHHHCCHH Q ss_conf 74440223464225627-9604873162135680001989 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMYDLS 222 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~DLA 222 (316) .|+|+.|+..||||.+. +.+. |.||+.|--+..--|-+ T Consensus 487 ~~IIYRDlKLdNiLLD~eGh~k-iADFGlcKe~m~~g~~T 525 (694) T KOG0694 487 NGIIYRDLKLDNLLLDTEGHVK-IADFGLCKEGMGQGDRT 525 (694) T ss_pred CCCEEEECCHHHEEECCCCCEE-ECCCCCCCCCCCCCCCC T ss_conf 6806641333225776667677-50145331457888740 No 422 >PRK13379 protocatechuate 4,5-dioxygenase subunit alpha; Provisional Probab=81.62 E-value=3.6 Score=20.70 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=45.2 Q ss_pred CCHHHCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHH Q ss_conf 6800019899-----998643116888787889999988764188998999999-----99999999999999999 Q gi|254780795|r 214 NDFLMYDLSI-----CINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLY 279 (316) Q Consensus 214 ~~~~i~DLAi-----~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~ 279 (316) -|.++||... .+|-+|+.-..+-+-+++.+==++|....+||++|+.++ -.||+..+-=|+|.-+. T Consensus 12 pGTy~Fd~~~srkgY~LN~fc~sl~~~~~Re~F~aDe~Ay~d~~~LTeEqk~aV~~RDw~~li~~Ggniy~L~Kla 87 (119) T PRK13379 12 GGTYVFDLRTSNRALRINRFFWHMIRAPWRDRFLQDAEALMQEADLTEQEKELIRARDWLGLVQYGANFFVIEKFA 87 (119) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 9980268999988568999999967788899998399999977599999999999615999998476399999999 No 423 >KOG0577 consensus Probab=80.90 E-value=4.2 Score=20.25 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=73.8 Q ss_pred CCHHHHHHHHHHCCCCCE-EEEEECCCCCEEEEEEEEECCCCEEEEE----ECCC-CC--HHHHHHHHHHHHHHHHCCCC Q ss_conf 899999999984899860-5310046681200179994399589998----2166-99--88999999999998532677 Q gi|254780795|r 7 PPQKEIQSFVQEYAIGQL-NSVQPIIHGVENSNFVIQTSKGTFILTI----YEKR-MN--EKDLPVFIELLHYISRNKLP 78 (316) Q Consensus 7 ls~~el~~il~~y~lg~~-~~~~~i~~G~~Ntny~v~t~~~~yiLri----~e~~-~~--~~~l~~~~~ll~~L~~~gip 78 (316) |-..+|..++..-|-.++ ..++.|.+|.---.|+-....+.=|+-| |... .. -.+|--++.+|+.| . T Consensus 10 lKDPeiA~LF~k~DPEklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l-----~ 84 (948) T KOG0577 10 LKDPEIADLFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQL-----R 84 (948) T ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-----C T ss_conf 78806999872489899988899844786432677541575503444112555522078999999999999961-----5 Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 55510010267787522451557864788707689989999999986436753068754332311245645766752001 Q gi|254780795|r 79 CPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDK 158 (316) Q Consensus 79 vP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~ 158 (316) -|..|--+ |.++.+. ..|.||+|+=|.. . -|-..|+. + T Consensus 85 HPntieYk-gCyLre~--TaWLVMEYClGSA------s-------DlleVhkK---------p----------------- 122 (948) T KOG0577 85 HPNTIEYK-GCYLREH--TAWLVMEYCLGSA------S-------DLLEVHKK---------P----------------- 122 (948) T ss_pred CCCCCCCC-CEEECCC--HHHHHHHHHHCCH------H-------HHHHHHHC---------C----------------- T ss_conf 98721202-1123120--4889999871447------8-------89999755---------5----------------- Q ss_pred CCHHHHHHH-H---HHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC Q ss_conf 552278899-9---99998887652107774440223464225627960487316213568 Q gi|254780795|r 159 VDEDLKKEI-D---HEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCND 215 (316) Q Consensus 159 ~~~~~~~~l-~---~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~ 215 (316) +.+.....| . .-+.++.+ .+.||.|...+|||..+..++-+-||+-|..- T Consensus 123 lqEvEIAAi~~gaL~gLaYLHS-------~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~ 176 (948) T KOG0577 123 LQEVEIAAITHGALQGLAYLHS-------HNRIHRDIKAGNILLSEPGLVKLADFGSASIM 176 (948) T ss_pred CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCCCEEECCCCEEEECCCCCHHHC T ss_conf 1278999999888889999987-------54776311136367437772552235514541 No 424 >pfam07387 Seadorna_VP7 Seadornavirus VP7. This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length. The function of this family is unknown. However, it appears to be distantly related to protein kinases. Probab=77.57 E-value=3.8 Score=20.53 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=42.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC Q ss_conf 99999999864367530687543323112456457667520015522788999999988876521077744402234642 Q gi|254780795|r 116 IHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDN 195 (316) Q Consensus 116 ~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~N 195 (316) ...+-==+.+|+||-+.+=- |. .....--.++++.+. .......+..-++.+...... ..+.+|||.+|+| T Consensus 103 ~~y~nKy~vfArmhGilrLk-----ND-n~y~yGvIlE~Cy~i-~i~~~N~I~aglk~Lm~fH~e--~~~~lHGDcnp~n 173 (308) T pfam07387 103 ALYFNKYRVFARMHGILRLK-----ND-NNYNYGIILEKCYKI-RINFSNFITAGLKDLMDFHSE--SGGTLHGDCNPQN 173 (308) T ss_pred HHHHHHHHHHHHHHHEEEEE-----CC-CCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHCC--CCCEECCCCCHHH T ss_conf 56520577888753204750-----47-883257886421464-200478899878899986246--8971336778777 Q ss_pred EEECCCCCEEEECC Q ss_conf 25627960487316 Q gi|254780795|r 196 VLFYNNKIMGLIDF 209 (316) Q Consensus 196 iL~~~~~i~giIDF 209 (316) ++.+++.-.-+.|= T Consensus 174 iMcDk~G~lKlVDP 187 (308) T pfam07387 174 LMCDKNGYLKLVDP 187 (308) T ss_pred EEECCCCCEEECCH T ss_conf 53468897786074 No 425 >KOG0588 consensus Probab=76.61 E-value=2.8 Score=21.39 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=21.4 Q ss_pred CCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 74440223464225627-9604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .++||.|+.|-|+|.+. ++|. |=||+.|. T Consensus 131 ~~icHRDLKpENlLLd~~~nIK-IADFGMAs 160 (786) T KOG0588 131 FNICHRDLKPENLLLDVKNNIK-IADFGMAS 160 (786) T ss_pred HCCEECCCCCHHHHHHCCCCEE-EECCCEEE T ss_conf 0502145772443220226776-54043241 No 426 >pfam02696 UPF0061 Uncharacterized ACR, YdiU/UPF0061 family. Probab=76.38 E-value=5.5 Score=19.51 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=52.4 Q ss_pred HHHHHCCCCCCCCCCCC-HHHH-HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH--HHHHH--HHHCCCCCCCCCCCC Q ss_conf 99853267755510010-2677-875224515578647887076899899999999--86436--753068754332311 Q gi|254780795|r 70 HYISRNKLPCPIPIPRN-DGKL-YGFLCKKPANIFSFIKGSPLNHISDIHCEEIGS--MLASM--HQKTKNFHLYRKNTL 143 (316) Q Consensus 70 ~~L~~~gipvP~pi~~~-~G~~-~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~--~La~l--H~~~~~f~~~r~~~~ 143 (316) +.++.=|||..+.+.-. .|+. +..-.-.|++++.++.-.|++--+-+.+..-++ .|.+| |.+..-|+.- T Consensus 142 Eam~~LGIpTTRaLslv~tge~~v~r~~~epgAvl~RvA~ShiR~GtFe~~~~~~~~~~l~~L~dy~I~~~yp~~----- 216 (487) T pfam02696 142 EALHRLGIPTTRALSLVETGDSLWRRDEPEPAAVMIRFAPSHIRFGTFERFHYRHQTEQIAQLLDHVIVTYYPEV----- 216 (487) T ss_pred HHHHHCCCCCCCEEEEEECCCCEEECCCCCCCEEEEEECCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----- T ss_conf 999874998632258995488503657745531688741553021017998871899999999999998848542----- Q ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCC Q ss_conf 2456457667520015--522788999999988876521077744402234642256279604873162 Q gi|254780795|r 144 SPLNLKFLWAKCFDKV--DEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFY 210 (316) Q Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~ 210 (316) .....+.. ...+.+++.+..+.+...| ...|+|||=+|.||+-+.|.. ||++ T Consensus 217 --------~~~~~~~~~~y~~~~~~Vv~rtA~LVA~W---q~vGFvHGVMNTDNmSI~GeT----IDYG 270 (487) T pfam02696 217 --------SGSNSDDEDKYIAFFRVVVERVAKLVAQW---QAAGFAHGVLNTDNMSITGLT----FDYG 270 (487) T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCEECCCCCEECCEE----CCCC T ss_conf --------01256643699999999999999999999---976010020026783423402----2666 No 427 >cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and Probab=76.29 E-value=4.9 Score=19.84 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=38.5 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCC-CCCHH-----------HC--CHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHH Q ss_conf 40223464225627-960487316213-56800-----------01--98999986431168887878899-99988764 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CNDFL-----------MY--DLSICINAWCFDENNTYNPSRGF-SILNGYNK 250 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~~~~-----------i~--DLAi~i~~~c~~~~~~~d~~~~~-~~l~gY~~ 250 (316) ==||=|.||+|+++ |++- -|||++. +.++- .+ |.+..+.....+..+.-.-.+++ -...||.. T Consensus 214 gIgDRHndNIml~~~Ghlf-HIDFG~iLg~~p~~~g~~rE~~PFklt~e~~~v~~~g~~~~~~s~~f~~F~~lc~~ay~~ 292 (366) T cd05175 214 GIGDRHNSNIMVKDDGQLF-HIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLA 292 (366) T ss_pred CCCCCCCCCEEECCCCCEE-EEECHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 2466678845798999899-986126536698888978789997407999999727887777658799999999999999 Q ss_pred CCCCCHHHHHHHHHH Q ss_conf 188998999999999 Q gi|254780795|r 251 VRKISENELQSLPTL 265 (316) Q Consensus 251 vrpLs~~E~~~l~~l 265 (316) +|+=+..=+..+-.| T Consensus 293 lRk~~~lilnLf~LM 307 (366) T cd05175 293 IRQHANLFINLFSMM 307 (366) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999899999999998 No 428 >pfam07746 LigA Aromatic-ring-opening dioxygenase LigAB, LigA subunit. This is a family of aromatic ring opening dioxygenases which catalyse the ring-opening reaction of protocatechuate and related compounds. Probab=76.03 E-value=2.9 Score=21.28 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=39.7 Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHH Q ss_conf 8643116888787889999988764188998999999-----9999999999999999987 Q gi|254780795|r 226 NAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLYDS 281 (316) Q Consensus 226 ~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~d~ 281 (316) |-+|+.-..+-+.+++.+=-++|.+..+||++|+.++ ..|++..+-.|+|..+... T Consensus 2 N~f~~sl~~~~~R~~F~~D~eay~~~~~Lt~eqr~av~~rD~~~L~~~G~n~y~l~Kl~~~ 62 (88) T pfam07746 2 NKFCMSLIKAENRERFLADEEAYLDEYGLTEEQKAAVRARDWNGLIALGGNFYYLAKLAAV 62 (88) T ss_pred HHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 1789987879999999839999987279999999999826699999945859999999998 No 429 >KOG4236 consensus Probab=75.66 E-value=6 Score=19.26 Aligned_cols=29 Identities=41% Similarity=0.695 Sum_probs=23.8 Q ss_pred CCEEECCCCCCCEEECC----CCCEEEECCCCCC Q ss_conf 74440223464225627----9604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYN----NKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~----~~i~giIDF~~~~ 213 (316) +++.|.|+.|.|||... .++. +-||++|. T Consensus 683 knIvHCDLKPENVLLas~~~FPQvK-lCDFGfAR 715 (888) T KOG4236 683 KNIVHCDLKPENVLLASASPFPQVK-LCDFGFAR 715 (888) T ss_pred CCEEECCCCCHHEEECCCCCCCCEE-ECCCCCEE T ss_conf 5652115770224422579987413-40454002 No 430 >KOG0669 consensus Probab=75.16 E-value=3 Score=21.23 Aligned_cols=28 Identities=36% Similarity=0.562 Sum_probs=25.4 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 4440223464225627960487316213 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) -++|.|+.+.|||.+++.+.-+-||+.+ T Consensus 144 kilHRDmKaaNvLIt~dgilklADFGla 171 (376) T KOG0669 144 KILHRDMKAANVLITKDGILKLADFGLA 171 (376) T ss_pred HHHHHCCCHHHEEECCCCEEEEECCCCC T ss_conf 6765003475478737863886024443 No 431 >KOG0590 consensus Probab=74.94 E-value=1.9 Score=22.58 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=27.3 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHC Q ss_conf 744402234642256279604873162135680001 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMY 219 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~ 219 (316) .|+.|-|+.++|+++..+.+.-++||+-+...-..+ T Consensus 439 ~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~ 474 (601) T KOG0590 439 MGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPW 474 (601) T ss_pred CCCHHHHCCCCCEEEECCCEEEEEECCCHHHCCCCC T ss_conf 284164377654688637705553057614216675 No 432 >KOG4717 consensus Probab=74.57 E-value=6.1 Score=19.24 Aligned_cols=28 Identities=43% Similarity=0.708 Sum_probs=20.5 Q ss_pred CEEECCCCCCCEEE-CCCCCEEEECCCCC Q ss_conf 44402234642256-27960487316213 Q gi|254780795|r 185 GIIHADLFPDNVLF-YNNKIMGLIDFYFS 212 (316) Q Consensus 185 g~IHgDl~~~NiL~-~~~~i~giIDF~~~ 212 (316) .++|.|+.|.||.| ++-.++-+-||+|+ T Consensus 138 HVVHRDLKPENVVFFEKlGlVKLTDFGFS 166 (864) T KOG4717 138 HVVHRDLKPENVVFFEKLGLVKLTDFGFS 166 (864) T ss_pred HHEECCCCCCEEEEEEECCCEEEECCCCC T ss_conf 40003478530577651380574003545 No 433 >KOG4530 consensus Probab=73.69 E-value=6.8 Score=18.94 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=41.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 2677555100102677875224515578647887076899899999999864367530 Q gi|254780795|r 75 NKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKT 132 (316) Q Consensus 75 ~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~ 132 (316) -++-+|.|+++.-...++++.|||+.+.+|= .+--.-...|++++|..| +||.+. T Consensus 97 YN~gypA~LKNAlD~lyheW~gKPalivSyG--GhGGg~c~~qL~~v~~fL-km~vai 151 (199) T KOG4530 97 YNFGYPAPLKNALDWLYHEWAGKPALIVSYG--GHGGGRCQYQLRQVGVFL-KMHVAI 151 (199) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCHHHHHHHHHHHHH-EEEEEC T ss_conf 3677766777788876301059965999736--878732799999987551-001313 No 434 >cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P Probab=73.18 E-value=7 Score=18.86 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=40.1 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCCC-C-----------HHH--CCHHHHHHHHHHCCCCCCCH---HHHH-HHHHH Q ss_conf 40223464225627-96048731621356-8-----------000--19899998643116888787---8899-99988 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN-D-----------FLM--YDLSICINAWCFDENNTYNP---SRGF-SILNG 247 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~-~-----------~~i--~DLAi~i~~~c~~~~~~~d~---~~~~-~~l~g 247 (316) ==||=|.+|+|++. |++. -|||++.-- . |+. .|.+..+. +..|..+. .+++ -...| T Consensus 215 GIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~lt~emv~vmg----~g~~g~~S~~f~~F~~~c~~a 289 (366) T cd05165 215 GIGDRHNDNIMVKETGQLF-HIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIG----RGKKDNTSEHFQRFQDLCEKA 289 (366) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH----CCCCCCCCHHHHHHHHHHHHH T ss_conf 3566678845688999999-98634663678877898777899888899999984----568899978899999999999 Q ss_pred HHHCCCCCHHHHHHHHHH Q ss_conf 764188998999999999 Q gi|254780795|r 248 YNKVRKISENELQSLPTL 265 (316) Q Consensus 248 Y~~vrpLs~~E~~~l~~l 265 (316) |..+|+=+..=+..+-.| T Consensus 290 y~~lRk~~~lil~L~~lM 307 (366) T cd05165 290 YLALRRHGNLLIILFSMM 307 (366) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999898999999999 No 435 >cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c Probab=72.99 E-value=7 Score=18.84 Aligned_cols=76 Identities=16% Similarity=0.061 Sum_probs=38.1 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCC-CCHH----HCCHH-----HHHHHHHHCCCCCCCHHHHH-HHHHHHHHCCCC Q ss_conf 40223464225627-9604873162135-6800----01989-----99986431168887878899-999887641889 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSC-NDFL----MYDLS-----ICINAWCFDENNTYNPSRGF-SILNGYNKVRKI 254 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~-~~~~----i~DLA-----i~i~~~c~~~~~~~d~~~~~-~~l~gY~~vrpL 254 (316) ==||=|.+|+|++. +++. -|||++.- .++. -+|-| --+.. .+...++-.-.++. -..+||..+|+= T Consensus 206 gIgDRHn~NImi~~~G~l~-HIDFG~iLG~~~~~~~~~~E~aPFklt~em~~-vmgG~~S~~f~~F~~lc~~ay~~lRk~ 283 (352) T cd00891 206 GIGDRHNDNIMLTKTGHLF-HIDFGHFLGNFKKKFGIKRERAPFVLTPDMAY-VMGGGDSEKFQRFEDLCCKAYNILRKH 283 (352) T ss_pred CCCCCCCCCEEECCCCCEE-EEECHHHHCCCCCCCCCCCCCCCEECCHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 2566677755798888599-99644765679988997778889305899999-967998487999999999999999997 Q ss_pred CHHHHHHHHH Q ss_conf 9899999999 Q gi|254780795|r 255 SENELQSLPT 264 (316) Q Consensus 255 s~~E~~~l~~ 264 (316) +..=+..+-. T Consensus 284 ~~~ii~L~~l 293 (352) T cd00891 284 GNLFINLFSL 293 (352) T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 436 >KOG0582 consensus Probab=72.32 E-value=7.3 Score=18.74 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=64.0 Q ss_pred CCCCCEEEEEEEEE-CCCCEE-EEEE--CCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 46681200179994-399589-9982--1669-98899999999999853267755510010267787522451557864 Q gi|254780795|r 30 IIHGVENSNFVIQT-SKGTFI-LTIY--EKRM-NEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF 104 (316) Q Consensus 30 i~~G~~Ntny~v~t-~~~~yi-Lri~--e~~~-~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~ 104 (316) |..|..-+.|+-.. ..++|| .|++ |+-. +-+.|..++..|..+ .=|.++... ..+.++...|+|++| T Consensus 34 IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~-----~HPNIv~~~---~sFvv~~~LWvVmpf 105 (516) T KOG0582 34 IGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLI-----DHPNIVTYH---CSFVVDSELWVVMPF 105 (516) T ss_pred EECCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHC-----CCCCCCEEE---EEEEECCEEEEEEHH T ss_conf 704630576443420468779999950665203699999999875533-----799832077---889836566885433 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78870768998999999998643675306875433231124564576675200155227889999999888765210777 Q gi|254780795|r 105 IKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPT 184 (316) Q Consensus 105 i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~ 184 (316) +.|.++- |..-..|+- + ++ +..-..+.+++.+.+.++.. . T Consensus 106 Ma~GS~l-----------------dIik~~~~~------G-------l~---E~~Ia~iLre~LkaL~YLH~-------~ 145 (516) T KOG0582 106 MAGGSLL-----------------DIIKTYYPD------G-------LE---EASIATILREVLKALDYLHQ-------N 145 (516) T ss_pred HCCCCHH-----------------HHHHHHCCC------C-------CC---HHHHHHHHHHHHHHHHHHHH-------C T ss_conf 3377289-----------------999997136------5-------34---78999999999999999986-------6 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 4440223464225627960487316213 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) |-||.|...+|||.+.+...-+=||+.+ T Consensus 146 G~IHRdvKAgnILi~~dG~VkLadFgvs 173 (516) T KOG0582 146 GHIHRDVKAGNILIDSDGTVKLADFGVS 173 (516) T ss_pred CCEECCCCCCCEEECCCCCEEECCCEEE T ss_conf 9330345546379868986897474145 No 437 >pfam09192 Act-Frag_cataly Actin-fragmin kinase, catalytic. Members of this family assume a secondary structure consisting of eight beta strands and 11 alpha-helices, organized in two lobes. They are predominantly found in actin-fragmin kinase, where they act as a catalytic domain that mediates the phosphorylation of actin. Probab=70.73 E-value=3.5 Score=20.82 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=28.2 Q ss_pred CCEEEEEECCCCCEEEE--EEEEECCC------CEEEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCC Q ss_conf 86053100466812001--79994399------58999821669988999999999998532-6775551 Q gi|254780795|r 22 GQLNSVQPIIHGVENSN--FVIQTSKG------TFILTIYEKRMNEKDLPVFIELLHYISRN-KLPCPIP 82 (316) Q Consensus 22 g~~~~~~~i~~G~~Ntn--y~v~t~~~------~yiLri~e~~~~~~~l~~~~~ll~~L~~~-gipvP~p 82 (316) ..+.+++.+..|..|+. ++|.|-++ ..|+|..- ...-+. +...|++. |+|+|+. T Consensus 25 ~~L~si~~~e~~~~ns~gv~f~~tf~~~~~~~~avViK~S~----ti~~E~---~~~~La~~Lgv~tPq~ 87 (274) T pfam09192 25 NNLSSIELIDHSTVNSSGVFFVATFNGNNNKENQVVIKSSS----TIAQEV---YASVLAKILGLPIPEM 87 (274) T ss_pred HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCC----CHHHHH---HHHHHHHHHCCCCCCE T ss_conf 88787751023567878679999715888865359997487----179999---9999999968999744 No 438 >cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin Probab=70.65 E-value=7.9 Score=18.50 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=38.9 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCC-CCHHHCC----HHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCCHHHH Q ss_conf 40223464225627-9604873162135-6800019----899998643116888787889-999988764188998999 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSC-NDFLMYD----LSICINAWCFDENNTYNPSRG-FSILNGYNKVRKISENEL 259 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~-~~~~i~D----LAi~i~~~c~~~~~~~d~~~~-~~~l~gY~~vrpLs~~E~ 259 (316) ==||=|.+|+|++. +++. -|||++.- .+|--+- |.--+.. .+...++-.-..+ .-...||..+|+=.+.=+ T Consensus 205 gigDRH~~NImi~~~G~l~-HIDFG~~lg~~p~~~~~PfkLt~emv~-~mGG~~s~~f~~F~~lc~~ay~~lRk~~~~il 282 (350) T cd00896 205 GVGDRHLDNLLLTKDGKLF-HIDFGYILGRDPKPFPPPMKLCKEMVE-AMGGAQSEGYQEFKSYCCEAYNILRKSANLIL 282 (350) T ss_pred CCCCCCCCCEEECCCCCEE-EEEEHHHHCCCCCCCCCCEECCHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2677576745699999889-984134417898778898035799998-70898857699999999999999998599999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780795|r 260 QSLPTL 265 (316) Q Consensus 260 ~~l~~l 265 (316) ..+-.| T Consensus 283 ~L~~lM 288 (350) T cd00896 283 NLFSLM 288 (350) T ss_pred HHHHHH T ss_conf 999997 No 439 >cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno Probab=70.38 E-value=2.7 Score=21.53 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=20.3 Q ss_pred EEECCCCCCCEEECC--CCCEEEECCCCC Q ss_conf 440223464225627--960487316213 Q gi|254780795|r 186 IIHADLFPDNVLFYN--NKIMGLIDFYFS 212 (316) Q Consensus 186 ~IHgDl~~~NiL~~~--~~i~giIDF~~~ 212 (316) +-=||=|++|+|++. +++. -|||+.| T Consensus 211 lGLGDRH~~NILi~~~tG~vv-HIDfg~~ 238 (307) T cd05170 211 IGLGDRHLDNVLIDLKTGEVV-HIDYNVC 238 (307) T ss_pred HCCCCCCCCEEEEECCCCCEE-EEECHHH T ss_conf 236789864089986878889-9951233 No 440 >cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Probab=69.99 E-value=2.7 Score=21.55 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=22.5 Q ss_pred EEECCCCCCCEEEC--CCCCEEEECCCCCCCC Q ss_conf 44022346422562--7960487316213568 Q gi|254780795|r 186 IIHADLFPDNVLFY--NNKIMGLIDFYFSCND 215 (316) Q Consensus 186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~~~ 215 (316) +-=||=|++|+|++ .+++. -|||+++-.. T Consensus 130 lgigDRH~~NIli~~~tG~v~-hIDFg~~f~~ 160 (219) T cd00142 130 LGIGDRHPDNIMIDLDTGKLF-HIDFGFIFGK 160 (219) T ss_pred EECCCCCCCCEEEECCCCCEE-EEEEHHHHCC T ss_conf 132689987188983888699-9952554255 No 441 >KOG0591 consensus Probab=69.07 E-value=8.6 Score=18.28 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=23.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 74440223464225627960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) ..++|.|+.|.||+.+.+.++-+=||+-+ T Consensus 147 ~~VmHRDIKPaNIFl~~~gvvKLGDfGL~ 175 (375) T KOG0591 147 GTVMHRDIKPANIFLTANGVVKLGDFGLG 175 (375) T ss_pred CCEEECCCCCHHEEECCCCCEEECCCHHH T ss_conf 55234357601068717885664341157 No 442 >KOG0611 consensus Probab=68.43 E-value=7.4 Score=18.69 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=12.0 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCC Q ss_conf 444022346422562796048731621 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYF 211 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~ 211 (316) ++.|.|+...|||.+.|.-.-|-||+. T Consensus 173 rVvHRDLKLENILLD~N~NiKIADFGL 199 (668) T KOG0611 173 RVVHRDLKLENILLDQNNNIKIADFGL 199 (668) T ss_pred CCEECCCCHHHEEECCCCCEEEECCCH T ss_conf 500010005441323789745530430 No 443 >cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central Probab=67.24 E-value=3.6 Score=20.73 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=20.9 Q ss_pred EEECCCCCCCEEEC--CCCCEEEECCCCCC Q ss_conf 44022346422562--79604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFY--NNKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~ 213 (316) +-=||=|++|+|++ .+++. -|||+.+- T Consensus 141 lglGDRH~~NIli~~~tG~vv-HIDFg~~f 169 (237) T cd00892 141 LGLGDRHGENILFDSNTGDVV-HVDFNCLF 169 (237) T ss_pred HCCCCCCCCCEEEECCCCCEE-EEECHHHH T ss_conf 034788876589985888889-87121330 No 444 >cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi Probab=67.21 E-value=3.1 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=19.6 Q ss_pred EECCCCCCCEEECC--CCCEEEECCCCC Q ss_conf 40223464225627--960487316213 Q gi|254780795|r 187 IHADLFPDNVLFYN--NKIMGLIDFYFS 212 (316) Q Consensus 187 IHgDl~~~NiL~~~--~~i~giIDF~~~ 212 (316) ==||=|++|+|++. +++. -|||+.+ T Consensus 184 GLGDRH~~NIli~~~tG~vv-hIDF~~~ 210 (279) T cd05171 184 GLGDRHANNILIDEKTAEVV-HIDLGIA 210 (279) T ss_pred CCCCCCCCCEEEECCCCCEE-EECCHHH T ss_conf 15788865278875875199-9724776 No 445 >KOG4278 consensus Probab=66.90 E-value=8.1 Score=18.42 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=26.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+||.||-.-|.|+..+.|+-|-||+.+. T Consensus 384 knFIHRDLAARNCLVgEnhiVKvADFGLsR 413 (1157) T KOG4278 384 KNFIHRDLAARNCLVGENHIVKVADFGLSR 413 (1157) T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHHH T ss_conf 321555456551211346357752111566 No 446 >KOG0579 consensus Probab=66.70 E-value=9.5 Score=17.98 Aligned_cols=153 Identities=18% Similarity=0.306 Sum_probs=75.1 Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCC-E-EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 577089999999998489986053100466812001799943995-8-99982166998899999999999853267755 Q gi|254780795|r 3 VYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGT-F-ILTIYEKRMNEKDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 3 Vyt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~-y-iLri~e~~~~~~~l~~~~~ll~~L~~~gipvP 80 (316) ||-.|+..+.=.|+...|-|..-.+ |.-.....+ + .-++.+- -.+++|.-++--++-|+...- | T Consensus 24 v~rdlnP~d~WeIiGELGDGAFGKV-----------yKA~nket~~lAAaKvIet-kseEELEDylVEIeILa~CdH--P 89 (1187) T KOG0579 24 VYRDLNPRDHWEIIGELGDGAFGKV-----------YKAVNKETKLLAAAKVIET-KSEEELEDYLVEIEILAECDH--P 89 (1187) T ss_pred HHCCCCHHHHHHHHHHHCCCCCHHH-----------HHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCC--H T ss_conf 7515987888998764057610345-----------5442356004555444203-436677656420136530797--1 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 51001026778752245155786478870768998999999998643675306875433231124564576675200155 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD 160 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~ 160 (316) ..++-. +.+ .+.|+.+.|.+|+.|..+.. .+-++|+.|-. ..+ T Consensus 90 ~ivkLl-~ay--y~enkLwiliEFC~GGAVDa----imlEL~r~LtE------------------~QI------------ 132 (1187) T KOG0579 90 VIVKLL-SAY--YFENKLWILIEFCGGGAVDA----IMLELGRVLTE------------------DQI------------ 132 (1187) T ss_pred HHHHHH-HHH--HCCCCEEEEEEECCCCHHHH----HHHHHCCCCCH------------------HHH------------ T ss_conf 798887-777--20574489886358840768----89874466666------------------889------------ Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCC Q ss_conf 227889999999888765210777444022346422562-796048731621356 Q gi|254780795|r 161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCN 214 (316) Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~ 214 (316) ...-..+.+.++++.. ..+||.|+..+|||+. ++.|. +-||+-+.- T Consensus 133 qvvc~q~ldALn~LHs-------~~iIHRDLKAGNiL~TldGdir-LADFGVSAK 179 (1187) T KOG0579 133 QVVCYQVLDALNWLHS-------QNIIHRDLKAGNILLTLDGDIR-LADFGVSAK 179 (1187) T ss_pred HHHHHHHHHHHHHHHH-------CCHHHHHCCCCCEEEEECCCEE-EECCCCCCC T ss_conf 9999999999888764-------1233311145636897248576-300343412 No 447 >KOG2653 consensus Probab=65.95 E-value=2 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=8.4 Q ss_pred CCHHHHHHHHHHCCCCCEEEE Q ss_conf 899999999984899860531 Q gi|254780795|r 7 PPQKEIQSFVQEYAIGQLNSV 27 (316) Q Consensus 7 ls~~el~~il~~y~lg~~~~~ 27 (316) +|.+|+..++..||-|++.|| T Consensus 214 ls~~eia~vF~~WN~geleSf 234 (487) T KOG2653 214 LSNDEIAEVFDDWNKGELESF 234 (487) T ss_pred CCHHHHHHHHHHHCCCCHHHH T ss_conf 667889999976433316689 No 448 >cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat Probab=65.75 E-value=3.3 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=20.3 Q ss_pred EECCCCCCCEEEC--CCCCEEEECCCCCC Q ss_conf 4022346422562--79604873162135 Q gi|254780795|r 187 IHADLFPDNVLFY--NNKIMGLIDFYFSC 213 (316) Q Consensus 187 IHgDl~~~NiL~~--~~~i~giIDF~~~~ 213 (316) ==||-|++|++++ .++|. -|||++|- T Consensus 157 GlGDRh~~Nili~~~tG~vv-hiDf~~~f 184 (253) T cd05163 157 SINNRNPDKIFISRDTGNVY-QSDLLPSI 184 (253) T ss_pred CCCCCCHHHEEEECCCCCEE-EEEECHHH T ss_conf 16899856679986877789-98533221 No 449 >cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st Probab=65.73 E-value=3.8 Score=20.57 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=21.0 Q ss_pred EEECCCCCCCEEEC--CCCCEEEECCCCCC Q ss_conf 44022346422562--79604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFY--NNKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~ 213 (316) +-=||=|++|+|++ .+++. -|||+++- T Consensus 138 lglgDRH~~NIli~~~tG~vv-HIDF~~~f 166 (235) T cd05172 138 LGIGDRHLSNFLVDLETGGLV-GIDFGHAF 166 (235) T ss_pred HCCCCCCCCCEEEECCCCCEE-EECHHHHH T ss_conf 023688876489986987788-76001211 No 450 >cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII Probab=65.04 E-value=10 Score=17.77 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=41.2 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCCC---CHHHCCHH-----HHHHHHHHCCCCCCCHHHHH-HHHHHHHHCCCCCH Q ss_conf 40223464225627-96048731621356---80001989-----99986431168887878899-99988764188998 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN---DFLMYDLS-----ICINAWCFDENNTYNPSRGF-SILNGYNKVRKISE 256 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~---~~~i~DLA-----i~i~~~c~~~~~~~d~~~~~-~~l~gY~~vrpLs~ 256 (316) ==||=|.+|+|++. +++. -|||++.-- +..-+|-| --+... +...++-.-..+. -+++||..+|+=+. T Consensus 144 gIgDRHn~NImi~~~Ghl~-HIDFGfiLg~~pg~~~fE~aPFkLT~emv~v-mGG~~S~~f~~F~~lc~~af~~lRk~~~ 221 (293) T cd05168 144 QIKDRHNGNILIDNDGHII-HIDFGFMLSNSPGNVGFETAPFKLTQEYIEV-MGGVNSDLFNYFKKLFLKGFMALRKHVD 221 (293) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCEECCHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3566578864788988899-8742455345888888888995337999998-5898857899999999999999998799 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780795|r 257 NELQSLPTLLR 267 (316) Q Consensus 257 ~E~~~l~~ll~ 267 (316) .=+..+..|+. T Consensus 222 ~ii~L~~lM~~ 232 (293) T cd05168 222 RIILLVEIMQS 232 (293) T ss_pred HHHHHHHHHHC T ss_conf 99999999864 No 451 >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] Probab=64.08 E-value=3.5 Score=20.81 Aligned_cols=30 Identities=40% Similarity=0.730 Sum_probs=24.7 Q ss_pred CCEEECCCCCCCEEECCCC-CEEEECCCCCC Q ss_conf 7444022346422562796-04873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNK-IMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~-i~giIDF~~~~ 213 (316) .+++|.|+.|.|++.+... ..-++||+.+. T Consensus 120 ~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~ 150 (384) T COG0515 120 KGIIHRDIKPENILLDRDGRVVKLIDFGLAK 150 (384) T ss_pred CCCCCCCCCHHHEEECCCCCCEEECCCCCHH T ss_conf 7950788988993567788815765754112 No 452 >cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d Probab=63.78 E-value=3.9 Score=20.49 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=21.3 Q ss_pred EEECCCCCCCEEECC--CCCEEEECCCCCC Q ss_conf 440223464225627--9604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFYN--NKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~~--~~i~giIDF~~~~ 213 (316) +-=||=|++|+|++. +++. -|||+++- T Consensus 133 lglgDRH~~NIl~~~~tG~v~-HIDFg~~f 161 (222) T cd05164 133 LGLGDRHLDNILIDRETGEVV-HIDFGCIF 161 (222) T ss_pred HCCCCCCCCCEEEECCCCCEE-EEEHHHHH T ss_conf 125888866577764877489-98418762 No 453 >KOG0902 consensus Probab=63.61 E-value=11 Score=17.60 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=43.7 Q ss_pred ECCCCCCCEEECC-CCCEEEECCCCCCC----CHHH----CCHHHHHHHHHHCCCCCCCH---HHH-HHHHHHHHHCCCC Q ss_conf 0223464225627-96048731621356----8000----19899998643116888787---889-9999887641889 Q gi|254780795|r 188 HADLFPDNVLFYN-NKIMGLIDFYFSCN----DFLM----YDLSICINAWCFDENNTYNP---SRG-FSILNGYNKVRKI 254 (316) Q Consensus 188 HgDl~~~NiL~~~-~~i~giIDF~~~~~----~~~i----~DLAi~i~~~c~~~~~~~d~---~~~-~~~l~gY~~vrpL 254 (316) --|=|.+|+++++ |++. -|||++.-- |..- |-|.--+... + +|.... ..+ .-.++||-.+||- T Consensus 1656 ~KDRHNGNim~Dd~G~~i-HIDFGf~~e~sPGgnl~fE~~fKLt~Em~~~-m--gG~~~~~~f~~f~elcVk~yLA~R~~ 1731 (1803) T KOG0902 1656 IKDRHNGNIMIDDQGHII-HIDFGFMFESSPGGNLGFEPPFKLTKEMVML-M--GGKMEAKPFKWFQELCVKGYLAARPY 1731 (1803) T ss_pred CCCCCCCCEEECCCCCEE-EEEEEEEEEECCCCCCCCCCCCCCHHHHHHH-H--CCCCCCCCHHHHHHHHHHHHHHHCHH T ss_conf 222468835672678789-9862268850699866657873226999999-5--89877862899999999999860467 Q ss_pred CHHHHHHHHHHH Q ss_conf 989999999999 Q gi|254780795|r 255 SENELQSLPTLL 266 (316) Q Consensus 255 s~~E~~~l~~ll 266 (316) .++=......|+ T Consensus 1732 ~~~iv~~V~~ml 1743 (1803) T KOG0902 1732 MDAIVSLVQSML 1743 (1803) T ss_pred HHHHHHHHHHHH T ss_conf 888999999997 No 454 >cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi Probab=63.25 E-value=11 Score=17.56 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=38.5 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHH Q ss_conf 99998643116888787889999988764188998999999-----99999999999999999 Q gi|254780795|r 222 SICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSL-----PTLLRGAALRFFLTRLY 279 (316) Q Consensus 222 Ai~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l-----~~ll~~aalRf~lsrl~ 279 (316) +..+|-+|+.-..+-+-+++.+==++|....+||++|++++ -.||+..+-=|+|.-+. T Consensus 5 gY~LN~f~~sl~~~~nRe~F~ade~Ay~d~~~Lt~eqk~av~~RDw~~mi~~Ggniy~l~Kla 67 (94) T cd07923 5 AYRINRFLHRLIEPAHRERFLEDPEALFDEAGLTEEERTLIRNRDWIGMIRYGVIFFVLEKLA 67 (94) T ss_pred HHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 578999999977788899997099999987699999999999616999998376499999999 No 455 >KOG0200 consensus Probab=62.03 E-value=5.6 Score=19.46 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=26.7 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..+|.|+-.-|||..++++.-|=||+.|- T Consensus 438 ~~vHRDLAaRNVLi~~~~~~kIaDFGlar 466 (609) T KOG0200 438 PCVHRDLAARNVLITKNKVIKIADFGLAR 466 (609) T ss_pred CCCCCCCCCCCEEECCCCEEEECCCCCCC T ss_conf 85076654463466389578756887246 No 456 >KOG0614 consensus Probab=61.78 E-value=4.6 Score=20.04 Aligned_cols=30 Identities=43% Similarity=0.693 Sum_probs=26.0 Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 774440223464225627960487316213 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) .+|+|-.|+.|.|++.+.+...-+.||++| T Consensus 538 ~k~iIYRDLKPENllLd~~Gy~KLVDFGFA 567 (732) T KOG0614 538 RKGIIYRDLKPENLLLDNRGYLKLVDFGFA 567 (732) T ss_pred HCCCEECCCCHHHEEECCCCCEEEEEHHHH T ss_conf 648044147756625456885677510467 No 457 >pfam00454 PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase. Some members of this family probably do not have lipid kinase activity and are protein kinases. Probab=61.58 E-value=4.6 Score=20.01 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=21.2 Q ss_pred EEECCCCCCCEEEC--CCCCEEEECCCCCCC Q ss_conf 44022346422562--796048731621356 Q gi|254780795|r 186 IIHADLFPDNVLFY--NNKIMGLIDFYFSCN 214 (316) Q Consensus 186 ~IHgDl~~~NiL~~--~~~i~giIDF~~~~~ 214 (316) +==||=|++|+|++ .+++. =|||+++-- T Consensus 134 lglgDRH~~NILi~~~~G~~v-HIDfg~~f~ 163 (233) T pfam00454 134 LGNGDRHLDNILVDKTTGKLF-HIDFGLCFP 163 (233) T ss_pred HCCCCCCCCCEEEECCCCCEE-EECHHHHCC T ss_conf 127888876078976899488-762375504 No 458 >TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid .; GO: 0003824 catalytic activity, 0009058 biosynthetic process. Probab=61.30 E-value=12 Score=17.34 Aligned_cols=115 Identities=16% Similarity=0.259 Sum_probs=62.1 Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEE--ECCCCEEEEEECCCCCHHHHHHH----------HHHHHHH Q ss_conf 70899999999984899860531004668120017999--43995899982166998899999----------9999998 Q gi|254780795|r 5 THPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQ--TSKGTFILTIYEKRMNEKDLPVF----------IELLHYI 72 (316) Q Consensus 5 t~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~--t~~~~yiLri~e~~~~~~~l~~~----------~~ll~~L 72 (316) .++|.+|++.|.+.-|. .-|.|++. ++++.|=||+|-. ..++++- +.|++.. T Consensus 32 ne~s~~~mQ~IA~~~ny-------------SET~F~~~P~~~~~d~~LR~FTP---~~El~~aGHaTigs~y~~Gl~~~~ 95 (314) T TIGR00654 32 NELSEEEMQLIAEEINY-------------SETAFLLKPVSEKADLRLRIFTP---KSELPFAGHATIGSLYALGLLEVT 95 (314) T ss_pred CCCCHHHHHHHHHHHCC-------------CEEEEEECCCCCCCCEEEEEECC---CCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 00587899999997188-------------40255317878766637887648---753477786438999987620057 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHCCCCEEE-EECCCCCCC-CC-CCHHHHHHHHHHHHH-HHHHCCC-CC Q ss_conf 53267755510010267787522451557-864788707-68-998999999998643-6753068-75 Q gi|254780795|r 73 SRNKLPCPIPIPRNDGKLYGFLCKKPANI-FSFIKGSPL-NH-ISDIHCEEIGSMLAS-MHQKTKN-FH 136 (316) Q Consensus 73 ~~~gipvP~pi~~~~G~~~~~~~~k~~~L-~~~i~G~~~-~~-~~~~~~~~lG~~La~-lH~~~~~-f~ 136 (316) . ....+...+.++-|..=.++..+.-.| .++..+... +. .+.+.|..+..+||- ..+..++ ++ T Consensus 96 ~-~~~~~t~~~~~~~G~~Pvti~~~~g~l~is~~~~~~~f~~~~~~~~~~~l~~aLGLt~d~~~~~elp 163 (314) T TIGR00654 96 K-LEVATTLVQEEKAGLVPVTIEEKDGQLRISLEQAAPDFEPKLSGESRADLAKALGLTEDDFLKGELP 163 (314) T ss_pred C-CCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCC T ss_conf 8-7510238870367605678861589278860025888888987688999999838775681688766 No 459 >KOG0905 consensus Probab=61.27 E-value=12 Score=17.33 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=39.4 Q ss_pred ECCCCCCCEEECC-CCCEEEECCCCCCC------------CHHHC--CHHHHHHHHHHCCCCCCCHHHHHH----HHHHH Q ss_conf 0223464225627-96048731621356------------80001--989999864311688878788999----99887 Q gi|254780795|r 188 HADLFPDNVLFYN-NKIMGLIDFYFSCN------------DFLMY--DLSICINAWCFDENNTYNPSRGFS----ILNGY 248 (316) Q Consensus 188 HgDl~~~NiL~~~-~~i~giIDF~~~~~------------~~~i~--DLAi~i~~~c~~~~~~~d~~~~~~----~l~gY 248 (316) =+|=|.|||++.. |.+- -|||+---- .|++| |.|..||. |.-...+.+. -.++| T Consensus 1200 IcDRHNDNIMl~~sGHmF-HIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINg------G~kpt~~fq~FVDlCCrAy 1272 (1639) T KOG0905 1200 ICDRHNDNIMLTKSGHMF-HIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVING------GDKPTQRFQDFVDLCCRAY 1272 (1639) T ss_pred CCCCCCCCEEEECCCCEE-EEEHHHHCCHHHHHCCCCCCCCCEEEECCCHHHHCC------CCCCCHHHHHHHHHHHHHH T ss_conf 022567725783057379-974333234688745655456874775030412228------9998167889999999999 Q ss_pred HHCCCCCHHHHHHHHHH Q ss_conf 64188998999999999 Q gi|254780795|r 249 NKVRKISENELQSLPTL 265 (316) Q Consensus 249 ~~vrpLs~~E~~~l~~l 265 (316) +-+|+=+.-=+..|-.| T Consensus 1273 NiiRK~t~lllnlL~lM 1289 (1639) T KOG0905 1273 NIIRKNTNLLLNLLRLM 1289 (1639) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99987278999999998 No 460 >KOG1025 consensus Probab=60.26 E-value=12 Score=17.22 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=25.3 Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 77444022346422562796048731621356 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) .+.++|+|+..-|||+......-|-||+-+-. T Consensus 816 ~qrlVHrdLaaRNVLVksP~hvkitdfgla~l 847 (1177) T KOG1025 816 EQRLVHRDLAARNVLVKSPNHVKITDFGLAKL 847 (1177) T ss_pred HCCHHHHHHHHHHEEECCCCEEEEEECCHHHC T ss_conf 65412120234314414887578875040112 No 461 >KOG0580 consensus Probab=60.11 E-value=7.6 Score=18.62 Aligned_cols=145 Identities=21% Similarity=0.375 Sum_probs=71.9 Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEE--EEEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 99848998605310046681200179994399589--9982166-----9988999999999998532677555100102 Q gi|254780795|r 15 FVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFI--LTIYEKR-----MNEKDLPVFIELLHYISRNKLPCPIPIPRND 87 (316) Q Consensus 15 il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yi--Lri~e~~-----~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~ 87 (316) -+.+|++|++..= | .-| ..|+...+++.|| ||+-++. ..+.+++.++++..||.. |.+++ T Consensus 20 ~l~dfeigr~Lgk-g-kFG---~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~h-----pnilr--- 86 (281) T KOG0580 20 TLDDFEIGRPLGK-G-KFG---NVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRH-----PNILR--- 86 (281) T ss_pred CHHHCCCCCCCCC-C-CCC---CEEEEEECCCCCEEEEEEEEHHHHHHHCCHHHHHHEEEEECCCCC-----CCHHH--- T ss_conf 5112113665467-7-566---276764226784799873018888874306552102575304688-----32776--- Q ss_pred HHHHHHH--CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH Q ss_conf 6778752--2451557864788707689989999999986436753-068754332311245645766752001552278 Q gi|254780795|r 88 GKLYGFL--CKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQK-TKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLK 164 (316) Q Consensus 88 G~~~~~~--~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~-~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (316) .+..+ ..+.+.+++|.++- ++...|-.. +..|.-.+ ..... T Consensus 87 --lY~~fhd~~riyLilEya~~g--------------el~k~L~~~~~~~f~e~~--------------------~a~Yi 130 (281) T KOG0580 87 --LYGYFHDSKRIYLILEYAPRG--------------ELYKDLQEGRMKRFDEQR--------------------AATYI 130 (281) T ss_pred --HHHHEECCCEEEEEEEECCCC--------------HHHHHHHHCCCCCCCCCC--------------------HHHHH T ss_conf --645110342268898744884--------------189999755256646622--------------------55899 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC-CCCEEEECCCCCCCCH Q ss_conf 899999998887652107774440223464225627-9604873162135680 Q gi|254780795|r 165 KEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCNDF 216 (316) Q Consensus 165 ~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~ 216 (316) ..+.+.+... ..+.+||.|.-|.|+|..- +.+. +=||+.+...+ T Consensus 131 ~q~A~Al~y~-------h~k~VIhRdiKpenlLlg~~~~lk-iAdfGwsV~~p 175 (281) T KOG0580 131 KQLANALLYC-------HLKRVIHRDIKPENLLLGSAGELK-IADFGWSVHAP 175 (281) T ss_pred HHHHHHHHHH-------HCCCCCCCCCCHHHHCCCCCCCEE-CCCCCCEEECC T ss_conf 9998999875-------038720698977873648889700-26786143437 No 462 >cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and Probab=59.65 E-value=13 Score=17.16 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=38.7 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCC-CC-----------CHHHC--CHHHHHHHHHHCCCCCCCHHH---HH-HHHHH Q ss_conf 40223464225627-960487316213-56-----------80001--989999864311688878788---99-99988 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CN-----------DFLMY--DLSICINAWCFDENNTYNPSR---GF-SILNG 247 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~-----------~~~i~--DLAi~i~~~c~~~~~~~d~~~---~~-~~l~g 247 (316) ==||=|.||+|.+. |++- -|||++. +. .|+.. |.+-++ ...+.-+.+. ++ -...| T Consensus 211 gIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~lT~em~~vm-----~~g~g~~S~~f~~F~~lc~~A 284 (361) T cd05174 211 GIGDRHSDNIMIRESGQLF-HIDFGHFLGNFKTKFGINRERVPFILTYDFVHVI-----QQGKTNNSEKFERFRGYCEQA 284 (361) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH-----HCCCCCCCHHHHHHHHHHHHH T ss_conf 2466678845788999889-9861355356777788887889976669999999-----638998877899999999999 Q ss_pred HHHCCCCCHHHHHHHHHH Q ss_conf 764188998999999999 Q gi|254780795|r 248 YNKVRKISENELQSLPTL 265 (316) Q Consensus 248 Y~~vrpLs~~E~~~l~~l 265 (316) |...|+=+..=+..+-.| T Consensus 285 y~~lRk~~~lil~Lf~LM 302 (361) T cd05174 285 YKILRRHGTLFLHLFALM 302 (361) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999998789999999999 No 463 >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process. Probab=59.44 E-value=8.1 Score=18.43 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCE-EECCCCC--CCEEE Q ss_conf 88999999988876521077744-4022346--42256 Q gi|254780795|r 164 KKEIDHEFCFLKESWPKNLPTGI-IHADLFP--DNVLF 198 (316) Q Consensus 164 ~~~l~~~l~~~~~~~~~~Lp~g~-IHgDl~~--~NiL~ 198 (316) ++.+.+.++.+++...+++|-++ ||+||=. -|.++ T Consensus 171 P~km~~l~k~~k~~~kKd~~~sVHCHNDFGlAtANsi~ 208 (371) T TIGR02090 171 PQKMEELIKKIKENVKKDLPVSVHCHNDFGLATANSIA 208 (371) T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH T ss_conf 26799999999986358870588620860188999999 No 464 >KOG0607 consensus Probab=59.05 E-value=13 Score=17.09 Aligned_cols=31 Identities=39% Similarity=0.647 Sum_probs=23.3 Q ss_pred CCCEEECCCCCCCEEECC-CCCE--EEECCCCCC Q ss_conf 774440223464225627-9604--873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIM--GLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~--giIDF~~~~ 213 (316) .+|+-|.|+.|.|||... ++|+ -|-|||-.. T Consensus 194 ~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgS 227 (463) T KOG0607 194 TKGIAHRDLKPENILCESPNKVSPVKICDFDLGS 227 (463) T ss_pred HCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCC T ss_conf 3373013578200331488775860453344565 No 465 >smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. Probab=58.13 E-value=5 Score=19.80 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=20.6 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCCC Q ss_conf 40223464225627-96048731621356 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316) ==||=|++|++++. +++. -|||+++-. T Consensus 104 glgDRH~~Nili~~~G~v~-HIDfg~~~~ 131 (202) T smart00146 104 GLGDRHNDNIMLDKTGHLF-HIDFGFILG 131 (202) T ss_pred CCCCCCCCCEEEECCCCEE-EHHHHHHHC T ss_conf 1688986637881899888-424566643 No 466 >KOG1033 consensus Probab=58.04 E-value=2.1 Score=22.24 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=25.7 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 7444022346422562796048731621356 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) +++||-|+.|.||+|..+...-|-||+.... T Consensus 375 k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts 405 (516) T KOG1033 375 KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTS 405 (516) T ss_pred CCCHHHHCCCCCCCCCCCHHHHHHHHHHEEE T ss_conf 3335553353234345420466544440120 No 467 >KOG0597 consensus Probab=57.98 E-value=14 Score=16.97 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=23.2 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +++|.|+.|-|||..++...-+-||++|. T Consensus 120 rilhrd~kPqniLl~~~~~~KlcdFg~Ar 148 (808) T KOG0597 120 RILHRDMKPQNILLEKGGTLKLCDFGLAR 148 (808) T ss_pred CCCCCCCCCCEEEECCCCCEEECHHHHHH T ss_conf 72435687200441478733322024554 No 468 >KOG4158 consensus Probab=56.52 E-value=14 Score=16.82 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=22.8 Q ss_pred CCCEEECCCCCCCEEEC--CCC---CEEEECCCCCC Q ss_conf 77444022346422562--796---04873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFY--NNK---IMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~--~~~---i~giIDF~~~~ 213 (316) ..|+-|.|+..||||.+ +|. ++ |-||+.|- T Consensus 359 ~hgvAhRDlKSDNiL~ElddD~~P~LV-vaDFGCcL 393 (598) T KOG4158 359 KHGVAHRDLKSDNILLELDDDEIPQLV-VADFGCCL 393 (598) T ss_pred HCCCHHHCCCCCCEEEEECCCCCCEEE-ECCCCEEE T ss_conf 703012024556468873688785788-70454154 No 469 >KOG0696 consensus Probab=56.10 E-value=9.4 Score=18.02 Aligned_cols=30 Identities=37% Similarity=0.472 Sum_probs=25.0 Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCC Q ss_conf 774440223464225627-9604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~ 213 (316) .+|+|-.|+..|||+.+. +.|. |-||+.|- T Consensus 468 ~kgIiYRDLKLDNvmLd~eGHiK-i~DFGmcK 498 (683) T KOG0696 468 SKGIIYRDLKLDNVMLDSEGHIK-IADFGMCK 498 (683) T ss_pred CCCEEEEECCCCCEEECCCCCEE-EEECCCCC T ss_conf 27716640321206763678567-61336420 No 470 >cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n Probab=55.55 E-value=15 Score=16.72 Aligned_cols=73 Identities=27% Similarity=0.320 Sum_probs=40.5 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCC-CC---------C--HHHC--CHHHHHHHHHHCCCCCCCHHHHH----HHHHH Q ss_conf 40223464225627-960487316213-56---------8--0001--98999986431168887878899----99988 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CN---------D--FLMY--DLSICINAWCFDENNTYNPSRGF----SILNG 247 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~---------~--~~i~--DLAi~i~~~c~~~~~~~d~~~~~----~~l~g 247 (316) ==||=|.||+|++. |++- -|||++. +. + |+.. |++..++ . |.-+.+.++ -...| T Consensus 206 gIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~~~~re~~PF~lt~em~~v~~-----~-GG~~S~~f~~F~~lc~~a 278 (354) T cd05177 206 GVCDRHNDNIMLTHSGHMF-HIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFIT-----E-GGKKPQRFQRFVELCCRA 278 (354) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----C-CCCCCHHHHHHHHHHHHH T ss_conf 1466577855798998789-98503540677656787778899866899999996-----6-898967799999999999 Q ss_pred HHHCCCCCHHHHHHHHHHH Q ss_conf 7641889989999999999 Q gi|254780795|r 248 YNKVRKISENELQSLPTLL 266 (316) Q Consensus 248 Y~~vrpLs~~E~~~l~~ll 266 (316) |..+|+=+..=+..+-.|+ T Consensus 279 y~~lRk~~~lilnLf~LM~ 297 (354) T cd05177 279 YNIVRKHSQLLLNLLEMML 297 (354) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999871889999999984 No 471 >pfam08909 DUF1854 Domain of unknown function (DUF1854). This potential domain is functionally uncharacterized. It is found at the C-terminus of a number of ATP transporter proteins suggesting this domain may be involved in ligand binding. Probab=53.89 E-value=16 Score=16.55 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=29.5 Q ss_pred HHHHHHHH-HCCCCCEEEEEECCCCCEEEEEEEEECCCC--EEEE Q ss_conf 99999998-489986053100466812001799943995--8999 Q gi|254780795|r 10 KEIQSFVQ-EYAIGQLNSVQPIIHGVENSNFVIQTSKGT--FILT 51 (316) Q Consensus 10 ~el~~il~-~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~--yiLr 51 (316) +-+++-|+ +|-..++..+..|+.-...+.|-|.|+.|. |+++ T Consensus 46 ~lie~~La~reF~PeI~rI~~Vs~~~~p~~W~V~TdrG~~~f~lk 90 (133) T pfam08909 46 KLLEEELAYREFMPEILRINSVSSFATPSTWTVETDRGETKFVLK 90 (133) T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEEE T ss_conf 999999975676501799999725557627999956871899998 No 472 >pfam04767 Pox_F17 DNA-binding 11 kDa phosphoprotein. Family of poxvirus proteins required for virus morphogenesis. Protein function necessary for proteolytic processing of the major viral structural proteins, P4a and P4b. Probab=53.57 E-value=9.8 Score=17.89 Aligned_cols=20 Identities=30% Similarity=0.730 Sum_probs=15.7 Q ss_pred CCEEEEEEEEECCCCE-EEEE Q ss_conf 8120017999439958-9998 Q gi|254780795|r 33 GVENSNFVIQTSKGTF-ILTI 52 (316) Q Consensus 33 G~~Ntny~v~t~~~~y-iLri 52 (316) |+.++-|.|.|++|+| |||- T Consensus 1 ~~~~~PFiint~eGRyLVLKa 21 (98) T pfam04767 1 GYAHTPFIINTKEGRYLVLKA 21 (98) T ss_pred CCCCCCEEEECCCCEEEEEEE T ss_conf 965587588725760888888 No 473 >KOG4721 consensus Probab=53.00 E-value=6.7 Score=18.97 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.3 Q ss_pred EEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 4402234642256279604873162135 Q gi|254780795|r 186 IIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +||.||..-|||+.-+.++-|=||+-+. T Consensus 233 IIHRDLKSPNiLIs~~d~VKIsDFGTS~ 260 (904) T KOG4721 233 IIHRDLKSPNILISYDDVVKISDFGTSK 260 (904) T ss_pred HHHHCCCCCCEEEECCCEEEECCCCCHH T ss_conf 7662058986676516527740465347 No 474 >KOG1290 consensus Probab=52.95 E-value=9.1 Score=18.12 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=22.9 Q ss_pred EECCCCCEEEEEEEEECC-CCEE-EEEECC--CCCHHHHHHHHHHHHHHHHCC Q ss_conf 004668120017999439-9589-998216--699889999999999985326 Q gi|254780795|r 28 QPIIHGVENSNFVIQTSK-GTFI-LTIYEK--RMNEKDLPVFIELLHYISRNK 76 (316) Q Consensus 28 ~~i~~G~~Ntny~v~t~~-~~yi-Lri~e~--~~~~~~l~~~~~ll~~L~~~g 76 (316) +.+.=|-=-|.|+-.-.+ .+|| |||-.. +.++..+ -||.+|+..+... T Consensus 84 rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAl-DEIklL~~v~~~D 135 (590) T KOG1290 84 RKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAAL-DEIKLLQQVREGD 135 (590) T ss_pred EECCCCCCCEEEEEEECCCCEEEEEEEEEHHHHHHHHHH-HHHHHHHHHHHCC T ss_conf 841665432057776526772799998731667888788-9999999987259 No 475 >KOG0604 consensus Probab=52.61 E-value=17 Score=16.42 Aligned_cols=54 Identities=30% Similarity=0.403 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC---CCEEEECCCCCCCCHHHCCHHH Q ss_conf 788999999988876521077744402234642256279---6048731621356800019899 Q gi|254780795|r 163 LKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN---KIMGLIDFYFSCNDFLMYDLSI 223 (316) Q Consensus 163 ~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~---~i~giIDF~~~~~~~~i~DLAi 223 (316) +.+.|...+..+.. ..+-|.|+.|.|+|+.+. -+.-+-||+||-....-.+|-. T Consensus 166 I~~qI~~Av~~lH~-------~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~T 222 (400) T KOG0604 166 IMKQIGLAVRYLHS-------MNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMT 222 (400) T ss_pred HHHHHHHHHHHHHH-------CCHHHCCCCHHHEEEECCCCCCCEEECCCCCCCCCCCCCCCCC T ss_conf 99999999999986-------4213213776663430378986257225552025677764247 No 476 >cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n Probab=51.82 E-value=10 Score=17.84 Aligned_cols=72 Identities=21% Similarity=0.161 Sum_probs=36.0 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCC-CCCHHH----CC-----HHHHHHHHHHCCCC--CCCHHHHH-HHHHHHHHCC Q ss_conf 40223464225627-960487316213-568000----19-----89999864311688--87878899-9998876418 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFS-CNDFLM----YD-----LSICINAWCFDENN--TYNPSRGF-SILNGYNKVR 252 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~-~~~~~i----~D-----LAi~i~~~c~~~~~--~~d~~~~~-~~l~gY~~vr 252 (316) ==||=|.||+|.+. |++- -|||++. +..+.- .| |.--+.+ .+...+ .-.-.++. -..+||..+| T Consensus 205 gIgDRHndNIml~~~Ghlf-HIDFG~~Lg~~~~~~~~kre~~PFklt~emv~-vmgGg~~~s~~f~~F~~lc~~ay~~lR 282 (353) T cd05176 205 GICDRHNDNIMLRSTGHMF-HIDFGKFLGHAQMFGSFKRDRAPFVLTSDMAY-VINGGEKPTIRFQLFVDLCCQAYNLIR 282 (353) T ss_pred CCCCCCCCCEEECCCCCEE-EEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 2466678855787998789-98764015778666888868999766899999-972888775779999999999999999 Q ss_pred CCCHHHHH Q ss_conf 89989999 Q gi|254780795|r 253 KISENELQ 260 (316) Q Consensus 253 pLs~~E~~ 260 (316) +=...=+. T Consensus 283 k~~~lil~ 290 (353) T cd05176 283 KHSNLFLN 290 (353) T ss_pred HHHHHHHH T ss_conf 85999999 No 477 >KOG0589 consensus Probab=51.38 E-value=17 Score=16.29 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=63.7 Q ss_pred EEEE--ECCCCEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC-CEEEEECCCCCCCCCCC Q ss_conf 7999--4399589998216-699889999999999985326775551001026778752245-15578647887076899 Q gi|254780795|r 39 FVIQ--TSKGTFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK-PANIFSFIKGSPLNHIS 114 (316) Q Consensus 39 y~v~--t~~~~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k-~~~L~~~i~G~~~~~~~ 114 (316) ++|. .++..||||..+- +.+..+=..-+.-+.-|++ +.-|.+|.-++ ....++. -+.++.|.+|-...+ T Consensus 21 ~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~--~~hP~iv~y~d---s~~~~~~~l~Ivm~Y~eGg~l~~-- 93 (426) T KOG0589 21 LLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSK--LLHPNIVEYKD---SFEEDGQLLCIVMEYCEGGDLAQ-- 93 (426) T ss_pred HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCCEEEECC---CHHCCCCEEEEEEEECCCCCHHH-- T ss_conf 320102678517999874155673456789989999973--46987564234---31007856898886357988999-- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC Q ss_conf 89999999986436753068754332311245645766752001552278899999998887652107774440223464 Q gi|254780795|r 115 DIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPD 194 (316) Q Consensus 115 ~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~ 194 (316) .+.+-- ...|+-.+ +.+| .-.+.-.+..+. ...+.|.|+... T Consensus 94 ---------~i~~~k--~~~f~E~~-----i~~~---------------~~Q~~~av~ylH-------~~~iLHRDlK~~ 135 (426) T KOG0589 94 ---------LIKEQK--GVLFPEER-----ILKW---------------FVQILLAVNYLH-------ENRVLHRDLKCA 135 (426) T ss_pred ---------HHHHHH--HCCCCHHH-----HHHH---------------HHHHHHHHHHHH-------HHHHHCCCCHHH T ss_conf ---------999875--03461999-----9999---------------999999999987-------641002200565 Q ss_pred CEEECCCCCEEEECCCCCCC Q ss_conf 22562796048731621356 Q gi|254780795|r 195 NVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 195 NiL~~~~~i~giIDF~~~~~ 214 (316) ||+..+++..-+=||+-|-. T Consensus 136 Nifltk~~~VkLgDfGlaK~ 155 (426) T KOG0589 136 NIFLTKDKKVKLGDFGLAKI 155 (426) T ss_pred HHHCCCCCCEEECCHHHHHH T ss_conf 53204468644233235443 No 478 >KOG1240 consensus Probab=51.06 E-value=11 Score=17.54 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=10.9 Q ss_pred EEEECCCCEEEEEECCCC Q ss_conf 999439958999821669 Q gi|254780795|r 40 VIQTSKGTFILTIYEKRM 57 (316) Q Consensus 40 ~v~t~~~~yiLri~e~~~ 57 (316) +-.+.+|..|.|+|-++. T Consensus 41 r~k~~eG~vVvKVFvk~~ 58 (1431) T KOG1240 41 RAKDREGLVVVKVFVKQD 58 (1431) T ss_pred HCCCCCCEEEEEEEECCC T ss_conf 315778549999995259 No 479 >cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any Probab=50.88 E-value=9.3 Score=18.05 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=38.3 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCC-CCCCH----HHCC-----HHHHHHHHHHCCCC--CCCHHHHH-HHHHHHHHCC Q ss_conf 40223464225627-96048731621-35680----0019-----89999864311688--87878899-9998876418 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYF-SCNDF----LMYD-----LSICINAWCFDENN--TYNPSRGF-SILNGYNKVR 252 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~-~~~~~----~i~D-----LAi~i~~~c~~~~~--~~d~~~~~-~~l~gY~~vr 252 (316) ==||=|.+|+|+++ +++. -|||++ .+..+ .-+| |.--+.+ .+...+ +-.-..+. -..+||..+| T Consensus 205 gIgDRHn~NImi~~~Ghlf-HIDFG~~Lg~~~~~g~~~~e~~PFklt~em~~-vmggg~~~s~~f~~F~~lc~~ay~~lR 282 (353) T cd05166 205 GICDRHNDNIMLTKSGHMF-HIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAY-VINGGDKPTQRFQDFVDLCCRAYNIIR 282 (353) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 2566678864688998589-98644664688766898878999766799999-980799875779999999999999999 Q ss_pred CCCHHHHHHHHHH Q ss_conf 8998999999999 Q gi|254780795|r 253 KISENELQSLPTL 265 (316) Q Consensus 253 pLs~~E~~~l~~l 265 (316) +=+..=+..+-.| T Consensus 283 k~~~~ii~L~~lM 295 (353) T cd05166 283 KHANLLLNLLRMM 295 (353) T ss_pred HHHHHHHHHHHHH T ss_conf 9899999999997 No 480 >cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de Probab=50.51 E-value=9.6 Score=17.96 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=40.1 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCCC------------CHHHC--CHHHHHHHHHHCCCCCCCHH---HHH-HHHHH Q ss_conf 40223464225627-96048731621356------------80001--98999986431168887878---899-99988 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSCN------------DFLMY--DLSICINAWCFDENNTYNPS---RGF-SILNG 247 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~------------~~~i~--DLAi~i~~~c~~~~~~~d~~---~~~-~~l~g 247 (316) ==||=|.||+|++. |++- -|||++.-- .|+.. |.+-++. ..+.-+.+ +++ -..+| T Consensus 211 gIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~lt~e~~~vm~-----~g~~~~s~~f~~F~~lc~~a 284 (362) T cd05173 211 GIGDRHSDNIMVRKNGQLF-HIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQ-----QGKTGNTEKFGRFRQYCEDA 284 (362) T ss_pred CCCCCCCCCEEECCCCEEE-EEECHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH-----CCCCCCCHHHHHHHHHHHHH T ss_conf 2466678855798987399-98745653457678998878999877899999996-----48998877899999999999 Q ss_pred HHHCCCCCHHHHHHHHHHH Q ss_conf 7641889989999999999 Q gi|254780795|r 248 YNKVRKISENELQSLPTLL 266 (316) Q Consensus 248 Y~~vrpLs~~E~~~l~~ll 266 (316) |..+|+=...=+..+-.|+ T Consensus 285 y~~lRk~~~lii~L~~lMl 303 (362) T cd05173 285 YLILRKNGNLFITLFALML 303 (362) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999987899999999998 No 481 >KOG4645 consensus Probab=47.67 E-value=14 Score=16.95 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=22.6 Q ss_pred CCCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 7744402234642256279604873162135 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) ..|++|.|..+.|++.+.+.+.-.-||+-|. T Consensus 1352 ~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ 1382 (1509) T KOG4645 1352 EHGIVHRDIKPANILLDFNGLIKYGDFGSAV 1382 (1509) T ss_pred HCCCEECCCCCCCEEEECCCCEEEECCCCEE T ss_conf 6672213777556045137847740355315 No 482 >KOG1094 consensus Probab=47.39 E-value=11 Score=17.65 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=23.9 Q ss_pred CEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 44402234642256279604873162135 Q gi|254780795|r 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 185 g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) .++|+|+-+.|+|++++--.-|-||+.+. T Consensus 657 nfVHrd~a~rNcLv~~e~~iKiadfgmsR 685 (807) T KOG1094 657 NFVHRDLATRNCLVDGEFTIKIADFGMSR 685 (807) T ss_pred CHHHCCCCCCCEEECCCCCEEECCCCCCC T ss_conf 22311453003566475307964765323 No 483 >KOG0574 consensus Probab=46.93 E-value=10 Score=17.75 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=6.0 Q ss_pred CCCCCCCCCCCHH Q ss_conf 6775551001026 Q gi|254780795|r 76 KLPCPIPIPRNDG 88 (316) Q Consensus 76 gipvP~pi~~~~G 88 (316) .|..-.++.+.+| T Consensus 154 DIKAGNILLNT~G 166 (502) T KOG0574 154 DIKAGNILLNTDG 166 (502) T ss_pred HCCCCCEEECCCC T ss_conf 3112627874644 No 484 >cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and Probab=46.79 E-value=12 Score=17.44 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=39.3 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCCCCCCHHHC-----C-----HHHHHHHHHHCCCCCCCHH---HHH-HHHHHHHHC Q ss_conf 40223464225627-9604873162135680001-----9-----8999986431168887878---899-999887641 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYFSCNDFLMY-----D-----LSICINAWCFDENNTYNPS---RGF-SILNGYNKV 251 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~~~~~~~i~-----D-----LAi~i~~~c~~~~~~~d~~---~~~-~~l~gY~~v 251 (316) ==||=|.||+|++. +++- -|||++.--++.-+ | |.--+.+ .+...|.-+.+ +++ -...||..+ T Consensus 215 GIgDRHndNIml~~~Ghlf-HIDFG~iLG~~~~~~g~~rE~~PF~Lt~em~~-vmg~~gg~~S~~f~~F~~lC~~ay~~l 292 (365) T cd00894 215 GIGDRHNDNIMITETGNLF-HIDFGHILGNYKSFLGINKERVPFVLTPDFLF-VMGTSGKKTSLHFQKFQDVCVKAYLAL 292 (365) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 2455567753588988789-98417741899876887778898657899999-970478988777999999999999999 Q ss_pred CCCCHHHHHHHHHH Q ss_conf 88998999999999 Q gi|254780795|r 252 RKISENELQSLPTL 265 (316) Q Consensus 252 rpLs~~E~~~l~~l 265 (316) |+=+..=+..+-.| T Consensus 293 Rk~~~liinLf~lM 306 (365) T cd00894 293 RHHTNLLIILFSMM 306 (365) T ss_pred HHHHHHHHHHHHHH T ss_conf 99899999999999 No 485 >cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not Probab=46.73 E-value=12 Score=17.30 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=37.9 Q ss_pred EECCCCCCCEEECC-CCCEEEECCCC-CCCC-----------HHHC--CHHHHHHHHHHCCCC--CCCHHHHH-HHHHHH Q ss_conf 40223464225627-96048731621-3568-----------0001--989999864311688--87878899-999887 Q gi|254780795|r 187 IHADLFPDNVLFYN-NKIMGLIDFYF-SCND-----------FLMY--DLSICINAWCFDENN--TYNPSRGF-SILNGY 248 (316) Q Consensus 187 IHgDl~~~NiL~~~-~~i~giIDF~~-~~~~-----------~~i~--DLAi~i~~~c~~~~~--~~d~~~~~-~~l~gY 248 (316) ==||=|.||+|++. |++- -|||++ .+.. |+.+ |.+.++ ...+ +-.-.++. -...|| T Consensus 206 gIgDRHndNIml~~~Ghlf-HIDFG~iLg~~~~~~~~k~e~~PFklt~em~~vm-----gGg~~~s~~f~~F~~lc~~ay 279 (354) T cd00895 206 GICDRHNDNIMLKTTGHMF-HIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVI-----NGGDKPSSRFHDFVDLCCQAY 279 (354) T ss_pred CCCCCCCCCEEECCCCCEE-EEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH-----CCCCCCCHHHHHHHHHHHHHH T ss_conf 1356687845787999889-8733455336876789887889876678999997-----089988777999999999999 Q ss_pred HHCCCCCHHHHHHHHHH Q ss_conf 64188998999999999 Q gi|254780795|r 249 NKVRKISENELQSLPTL 265 (316) Q Consensus 249 ~~vrpLs~~E~~~l~~l 265 (316) ..+|+=+..=+..+-.| T Consensus 280 ~~lRk~~~lil~L~~LM 296 (354) T cd00895 280 NLIRKHTHLFLNLLGLM 296 (354) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99998699999999998 No 486 >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process. Probab=46.03 E-value=21 Score=15.76 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=22.1 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHC---CCCEEEEECCCCC Q ss_conf 9853267755510010267787522---4515578647887 Q gi|254780795|r 71 YISRNKLPCPIPIPRNDGKLYGFLC---KKPANIFSFIKGS 108 (316) Q Consensus 71 ~L~~~gipvP~pi~~~~G~~~~~~~---~k~~~L~~~i~G~ 108 (316) .|+++|+|+|+-.-.-|.+.-..+. |-|+++=| ..|+ T Consensus 95 ~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP-~~GS 134 (289) T TIGR02144 95 KLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKP-VIGS 134 (289) T ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEC-CCCC T ss_conf 999667889835898286899999997089889708-8884 No 487 >pfam05445 Pox_ser-thr_kin Poxvirus serine/threonine protein kinase. Probab=45.65 E-value=15 Score=16.67 Aligned_cols=20 Identities=50% Similarity=1.036 Sum_probs=15.3 Q ss_pred CCC--CCEEECCCCCCCEEECC Q ss_conf 077--74440223464225627 Q gi|254780795|r 181 NLP--TGIIHADLFPDNVLFYN 200 (316) Q Consensus 181 ~Lp--~g~IHgDl~~~NiL~~~ 200 (316) +|| .-++|.|+.|||||+=+ T Consensus 293 elp~c~nF~H~DLKPdNILiFd 314 (434) T pfam05445 293 ELPDCTNFLHVDLKPDNILIFD 314 (434) T ss_pred CCCCCCEEEECCCCCCCEEEEC T ss_conf 2787523676157777289836 No 488 >COG0397 Uncharacterized conserved protein [Function unknown] Probab=44.06 E-value=22 Score=15.57 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=53.7 Q ss_pred HHHHHCCCCCCCCCCC-CHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHH-----HHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 9985326775551001-02677875224515578647887076899899999-----99986436753068754332311 Q gi|254780795|r 70 HYISRNKLPCPIPIPR-NDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE-----IGSMLASMHQKTKNFHLYRKNTL 143 (316) Q Consensus 70 ~~L~~~gipvP~pi~~-~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~-----lG~~La~lH~~~~~f~~~r~~~~ 143 (316) +.+..-|||..+.+.- ..|..+..=...|++++..+.-.++.--+-+.... .-+.||..- +. T Consensus 142 EAmh~LGIpTTRaL~lv~tg~~v~Re~~ep~Avl~R~A~ShIRfGtFe~f~~~~~~e~l~~LaD~v-I~----------- 209 (488) T COG0397 142 EALHALGIPTTRALSLVETGEPVQREDEEPSAVLTRLAPSHIRFGTFERFAYRDRRDLLRQLADHV-IE----------- 209 (488) T ss_pred HHHHHCCCCCCCEEEEECCCCCEECCCCCCCEEEEEECCCCEEEECCCHHHHCCCHHHHHHHHHHH-HH----------- T ss_conf 999974899721035651798433156566447997412204552000455438769999999999-98----------- Q ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC----EEEECCCC Q ss_conf 2456457667520---01552278899999998887652107774440223464225627960----48731621 Q gi|254780795|r 144 SPLNLKFLWAKCF---DKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKI----MGLIDFYF 211 (316) Q Consensus 144 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i----~giIDF~~ 211 (316) ..+..+. ++....+.+.+.+....+...|. ..|+|||=+|.||+-+.|..+ .|++|=++ T Consensus 210 ------~~~p~~~~~~e~~Y~~~fr~Vv~R~A~lvA~Wq---a~GF~HGVmNTDNmSI~GeTiDYGP~aFld~yd 275 (488) T COG0397 210 ------HYFPDLADESERPYAALFRAVVSRSARLVARWM---AAGFVHGVLNTDNMSITGETFDYGPFAFLDRYD 275 (488) T ss_pred ------HHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCCEECCCCCEEECCCCCCCCEECCCCCC T ss_conf ------866031035765199999999999999999999---703010001258842322400466610145788 No 489 >KOG1095 consensus Probab=43.08 E-value=13 Score=17.09 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=27.1 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC Q ss_conf 744402234642256279604873162135 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316) +.+||-|+-.-|+|.+..+++-|-||+.|. T Consensus 821 ~~fvHRDLAaRNCLL~~~r~VKIaDFGlAr 850 (1025) T KOG1095 821 KHFVHRDLAARNCLLDERRVVKIADFGLAR 850 (1025) T ss_pred CCCCCCCHHHHHEEECCCCCEEECCCCHHH T ss_conf 797675510443232156747874441137 No 490 >TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process. Probab=41.17 E-value=20 Score=15.91 Aligned_cols=88 Identities=24% Similarity=0.353 Sum_probs=51.4 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH Q ss_conf 99999848998605310046681200179994399589998216699889999999999985326775551001026778 Q gi|254780795|r 12 IQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLY 91 (316) Q Consensus 12 l~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~ 91 (316) ++++|+++++|++..+.|-.||+ +||=.+- ..+.-+|--+|-+.|++.. +++| |.++ T Consensus 45 ~~~~le~~~~G~~~T~~GAaGGv------------~YiP~~~----~~~~~~fv~~l~~~l~~s~----Ri~P---Ggfl 101 (269) T TIGR01743 45 IKEVLEKFDIGKLETVPGAAGGV------------KYIPEVS----EKEAKEFVEELCEKLSESE----RILP---GGFL 101 (269) T ss_pred HHHHHHHCCCCEEEEECCCCCCE------------EEECCCC----CHHHHHHHHHHHHHHCCCC----CCCC---CCHH T ss_conf 99985006886478614788970------------5845646----0456889999998622888----4037---7475 Q ss_pred HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH----------HHCCCCCC Q ss_conf 75224515578647887076899899999999864367----------53068754 Q gi|254780795|r 92 GFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMH----------QKTKNFHL 137 (316) Q Consensus 92 ~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH----------~~~~~f~~ 137 (316) -. .. ---+|.-+..+|+.||+.= .+++|.|+ T Consensus 102 Y~--------~D-------ll~~Psi~ski~~ila~~F~d~~ID~V~TV~TKGvPL 142 (269) T TIGR01743 102 YL--------TD-------LLFKPSILSKIGKILASVFIDKEIDAVMTVETKGVPL 142 (269) T ss_pred HH--------HH-------HHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH T ss_conf 55--------34-------5417815777888875432685578789952188238 No 491 >KOG0194 consensus Probab=41.05 E-value=25 Score=15.27 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.5 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCCCCH Q ss_conf 744402234642256279604873162135680 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDF 216 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~ 216 (316) +++||-|+-.-|+|+..+.+.-|=||+.+..+. T Consensus 281 k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~ 313 (474) T KOG0194 281 KNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS 313 (474) T ss_pred CCCCCHHHHHHHHEECCCCEEEECCCCCCCCCC T ss_conf 798536576787052279857867665665774 No 492 >KOG4279 consensus Probab=40.99 E-value=25 Score=15.27 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=44.0 Q ss_pred CEEECCCCCCCEEECC-CCCEEEECCCCCC-------------------------CCHHHCCHHHHHHHH-HHC---CCC Q ss_conf 4440223464225627-9604873162135-------------------------680001989999864-311---688 Q gi|254780795|r 185 GIIHADLFPDNVLFYN-NKIMGLIDFYFSC-------------------------NDFLMYDLSICINAW-CFD---ENN 234 (316) Q Consensus 185 g~IHgDl~~~NiL~~~-~~i~giIDF~~~~-------------------------~~~~i~DLAi~i~~~-c~~---~~~ 234 (316) .++|.|..-||||++- ..|.-|=||+-+- .|++-|--|--|..+ |.. ..| T Consensus 695 ~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATG 774 (1226) T KOG4279 695 KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATG 774 (1226) T ss_pred CEEECCCCCCCEEEEECCCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHCHHHHCCCCCCCCCHHHHHHCCCEEEEECCC T ss_conf 44530356770798603434885136530232167864110221116318576633876778355544136536763048 Q ss_pred C-----CCHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 8-----78788999998876418899899999 Q gi|254780795|r 235 T-----YNPSRGFSILNGYNKVRKISENELQS 261 (316) Q Consensus 235 ~-----~d~~~~~~~l~gY~~vrpLs~~E~~~ 261 (316) . +-..++.-|--|.-++.|--++|+.+ T Consensus 775 rPPF~ElgspqAAMFkVGmyKvHP~iPeelsa 806 (1226) T KOG4279 775 RPPFVELGSPQAAMFKVGMYKVHPPIPEELSA 806 (1226) T ss_pred CCCEEECCCHHHHHHHHCCEECCCCCCHHHHH T ss_conf 99843468826756430401038999477889 No 493 >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Probab=39.91 E-value=20 Score=15.89 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=23.2 Q ss_pred EEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH Q ss_conf 7999439958999821669988999999999998532677555100102 Q gi|254780795|r 39 FVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRND 87 (316) Q Consensus 39 y~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~ 87 (316) +.|-+=.++.+||- |.|.... +-+.-|.+.|+|.|+.+.+-+ T Consensus 105 ~~VP~FGNR~lLrw-Eer~~~~------~~~~LLe~Agi~~Pk~~~~Pe 146 (363) T PRK13277 105 FPVPIFGNRYLLRW-EERTGEK------NYYRLLEKAGIPRPRTFKPPE 146 (363) T ss_pred CCCCEECCHHHHHH-CCCCHHH------HHHHHHHHCCCCCCCCCCCHH T ss_conf 88871147566322-3451167------899999867999870059966 No 494 >KOG0662 consensus Probab=39.73 E-value=26 Score=15.14 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=22.8 Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCC Q ss_conf 74440223464225627960487316213 Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFS 212 (316) Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~ 212 (316) ..+.|.|+.|.|+|.+.+.-.-+-||+-+ T Consensus 120 hnvlhrdlkpqnllin~ngelkladfgla 148 (292) T KOG0662 120 HNVLHRDLKPQNLLINRNGELKLADFGLA 148 (292) T ss_pred HHHHHCCCCCCEEEECCCCCEEECCCCHH T ss_conf 24664037711077536883875000335 No 495 >COG1693 Repressor of nif and glnA expression [Transcription] Probab=39.56 E-value=14 Score=16.80 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=56.0 Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 77089999999998489986053100466812001799943995899982166998899999999999853267755510 Q gi|254780795|r 4 YTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPI 83 (316) Q Consensus 4 yt~ls~~el~~il~~y~lg~~~~~~~i~~G~~Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi 83 (316) -|+.-.+|++.-+..|-+|.+.| .|-.=+-+|||--+|-+|+-|+-+. .++..+++-.++++.....+|+.+..-+ T Consensus 66 iTe~Gl~el~~~~~~~R~g~~~S--rIeem~y~t~fdp~t~~G~Vv~N~s--~i~k~dfedvl~iv~~~~~~GlsisprV 141 (325) T COG1693 66 ITEKGLKELKRALISERLGFISS--RIEEMAYRTNFDPETLKGKVVVNIS--VIDKSDFEDVLDIVKEVISSGLSISPRV 141 (325) T ss_pred EHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHCCCEEEEEEE--EECHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 42756999865466777788999--9999988614780104762888778--8649899999999999986677767725 Q ss_pred CCCHHHHH Q ss_conf 01026778 Q gi|254780795|r 84 PRNDGKLY 91 (316) Q Consensus 84 ~~~~G~~~ 91 (316) +-..|... T Consensus 142 ~i~E~ds~ 149 (325) T COG1693 142 KIIEGDSE 149 (325) T ss_pred EEEECCCC T ss_conf 77503666 No 496 >pfam11080 DUF2622 Protein of unknown function (DUF2622). This family is conserved in the Enterobacteriaceae family. Several members are named as YdiZ, a putative cytoplasmic protein. The function is not known. Probab=38.79 E-value=27 Score=15.05 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=44.2 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 99589998216699889999999999985326775551001026778752245155786478870768998999999998 Q gi|254780795|r 45 KGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSM 124 (316) Q Consensus 45 ~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~ 124 (316) -.+||+++ +..++-|.-..++-.||...||- .-+.+-+|. .++++-..|.+.+ ..+++.++++++. T Consensus 6 itryVVtv---~~hE~~LtdineLnn~ltr~GF~--~TltD~eG~-pHeLgtNtFgliS--------al~~~eV~~La~g 71 (96) T pfam11080 6 ITRYVVTV---KFHEDSLTEINELNNHLTRSGFL--LTLTDEEGN-PHELGTNTFGLIS--------ALSAQEVKALAAG 71 (96) T ss_pred CEEEEEEE---EECCCCHHHHHHHHHHHHCCCEE--EEEECCCCC-CCCCCCCCEEEEC--------CCCHHHHHHHHHH T ss_conf 16999999---98003167899998787416516--786358998-2013466146541--------5899999999998 Q ss_pred HHHHH Q ss_conf 64367 Q gi|254780795|r 125 LASMH 129 (316) Q Consensus 125 La~lH 129 (316) ||+-- T Consensus 72 L~e~A 76 (96) T pfam11080 72 LAQSA 76 (96) T ss_pred HHHHH T ss_conf 88986 No 497 >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator; InterPro: IPR014290 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents proteins belonging to the Rtf2 family of transcriptional regulators and are found, typically, as the first gene of the SUF operon. They are found only in a subset of the genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.. Probab=37.91 E-value=13 Score=17.04 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=29.1 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCE-EEEEECCCCCEEEEEEEEECCCCEEEEEE Q ss_conf 65770899999999984899860-53100466812001799943995899982 Q gi|254780795|r 2 AVYTHPPQKEIQSFVQEYAIGQL-NSVQPIIHGVENSNFVIQTSKGTFILTIY 53 (316) Q Consensus 2 aVyt~ls~~el~~il~~y~lg~~-~~~~~i~~G~~Ntny~v~t~~~~yiLri~ 53 (316) |=+|.|+-.-.+++|+.-..+.+ .|-+|+.||+. ++...+.-=|++|. T Consensus 32 A~~tgL~~pTvsK~Lk~L~~A~lV~S~RGv~GGY~----La~~~~~itv~~Iv 80 (130) T TIGR02944 32 AEQTGLEAPTVSKILKALSEAGLVTSKRGVEGGYT----LARAPEDITVADIV 80 (130) T ss_pred HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH----HHCCCCCCCHHHHH T ss_conf 86459886047899887642875324346430046----20054554365454 No 498 >COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism] Probab=37.74 E-value=28 Score=14.94 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHC--CCCCHHHHH Q ss_conf 99999999999999999987608851231--126879999 Q gi|254780795|r 262 LPTLLRGAALRFFLTRLYDSQNMPCNALT--ITKDPMEYI 299 (316) Q Consensus 262 l~~ll~~aalRf~lsrl~d~~~~~~~~~~--~~kdp~~~~ 299 (316) +++++- +-|||++|.+ ++...+.|. -+-.|+||. T Consensus 461 ~evl~e--tArFW~srv~--~~~~~~~y~I~gV~GPdEY~ 496 (772) T COG1554 461 LEVLLE--TARFWASRVH--FSDRNGRYEIHGVTGPDEYH 496 (772) T ss_pred HHHHHH--HHHHHHHHHE--ECCCCCEEEEECCCCCHHHH T ss_conf 999999--9999987705--51569869990576852543 No 499 >TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . . Probab=37.22 E-value=29 Score=14.89 Aligned_cols=82 Identities=9% Similarity=0.075 Sum_probs=51.4 Q ss_pred CEEEEEE-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEC-CCCCCC--CCCCHHHHHHHH Q ss_conf 5899982-166998899999999999853267755510010267787522451557864-788707--689989999999 Q gi|254780795|r 47 TFILTIY-EKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSF-IKGSPL--NHISDIHCEEIG 122 (316) Q Consensus 47 ~yiLri~-e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~-i~G~~~--~~~~~~~~~~lG 122 (316) .|-.++- ++=+..+-||=-.++|+.|++++++|.-.=.++|...+.+-=+ -.-=|.+ +++..+ .+|+|+..-..+ T Consensus 78 ~~Y~~LlD~~lTp~d~LPGi~~lL~~Lk~~~ikialASaSkNA~~vLekL~-L~~~Fd~IvDp~~~~~gKPdPEIFL~AA 156 (190) T TIGR01990 78 DYYVELLDKELTPEDVLPGIKSLLEDLKKKNIKIALASASKNAPTVLEKLE-LRDYFDAIVDPAEIKKGKPDPEIFLAAA 156 (190) T ss_pred HHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH-HHHCCCEEECHHHHCCCCCCHHHHHHHH T ss_conf 999999750689866040189999999984894887302344899999821-4220422645456217877867999999 Q ss_pred HHHHHHH Q ss_conf 9864367 Q gi|254780795|r 123 SMLASMH 129 (316) Q Consensus 123 ~~La~lH 129 (316) +.||=-= T Consensus 157 ~~LGv~P 163 (190) T TIGR01990 157 EGLGVSP 163 (190) T ss_pred HHCCCCH T ss_conf 7638975 No 500 >KOG0906 consensus Probab=36.63 E-value=12 Score=17.44 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=37.7 Q ss_pred ECCCCCCCEEECC-CCCEEEECCCCC-CCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHH----HHHHHHCCCCC Q ss_conf 0223464225627-960487316213-56800019899998643116888787889999----98876418899 Q gi|254780795|r 188 HADLFPDNVLFYN-NKIMGLIDFYFS-CNDFLMYDLSICINAWCFDENNTYNPSRGFSI----LNGYNKVRKIS 255 (316) Q Consensus 188 HgDl~~~NiL~~~-~~i~giIDF~~~-~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~----l~gY~~vrpLs 255 (316) -||=|.||++..+ ++.- -|||++. +.||--+--.+.++.=..+.-|.-....++.| -.+|...|.=+ T Consensus 698 vGDRhldNLllT~dGk~F-HiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRss 770 (843) T KOG0906 698 VGDRHLDNLLLTKDGKLF-HIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSS 770 (843) T ss_pred CCCCCCCCEEECCCCCEE-EEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 467776756873588379-8752223167999999843258999998546345889999999999999999852 Done!