HHsearch alignment for GI: 254780795 and conserved domain: pfam01163
>pfam01163 RIO1 RIO1 family. This is a family of atypical serine kinases which are found in archaea, bacteria and eukaryotes. Activity of Rio1 is vital in Saccharomyces cerevisiae for the processing of ribosomal RNA, as well as for proper cell cycle progression and chromosome maintenance. The structure of RIO1 has been determined.
Probab=98.56 E-value=3.4e-07 Score=66.23 Aligned_cols=97 Identities=24% Similarity=0.399 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999985326775551001026778752245155786478--8707689989999999986436753068754332
Q gi|254780795|r 63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIK--GSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRK 140 (316)
Q Consensus 63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~--G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~ 140 (316)
T Consensus 54 ~kEf~nL~rl~~~Gv~VP~Pi~~~----------r~vlvMe~Ig~~g~pa---------------p~Lk----d~~~--- 101 (186)
T pfam01163 54 EKEFRNLKRLYEAGVPVPKPIAVN----------RHVLVMEFIGDDGVPA---------------PRLK----DVEL--- 101 (186)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEE----------CCEEEEEEECCCCCCC---------------CCCC----CCCC---
T ss_conf 999999999998499999858962----------9899999856899335---------------5010----0786---
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 31124564576675200155227889999999888765210777444022346422562796048731621356
Q gi|254780795|r 141 NTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 102 -------------------~~~~~~~~~~ii~~~~~~y~---~~glVHgDLSEyNIL~~~~~~~-iID~~QaV~ 152 (186)
T pfam01163 102 -------------------EEEAEEIYDEIIREMRRLYQ---EAGLVHGDLSEYNVLVDDDKPV-IIDVPQAVE 152 (186)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHH---HCCCEECCCHHHHEEEECCCEE-EEECCCCCC
T ss_conf -------------------45399999999999999999---6693213620655064389679-995675225