>pfam06293 Kdo Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica.

Probab=98.78 E-value=1.4e-07 Score=68.71 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=87.0 Q ss_pred EEEEEEECCCCEEEEEEC-C----C---------CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf 017999439958999821-6----6---------9988999999999998532677555100102677875224515578 Q gi|254780795|r 37 SNFVIQTSKGTFILTIYE-K----R---------MNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316) Q Consensus 37 tny~v~t~~~~yiLri~e-~----~---------~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316) T Consensus 19 ~~~f~~~~~~~~~lr~y~rgg~~~~i~k~~~~~~~~~~ra~rE~~~L~~L~~~Gipvp~pva~~~~~~-~-~~~~a~LIT 96 (206) T pfam06293 19 TTWFVVARKDNGALRHYYRGGMWGKLNRDRYRFPLGRTRSFREFRLLRRLREAGVPVPKPVAAGAVKV-G-GEYQADLLT 96 (206) T ss_pred EEEEEEECCCCEEEEEEEECCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECC-C-CCEEEEEEH T ss_conf 18999966865244468877706466000134748886999999999999985999887668999836-8-717998864 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107 Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316) Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316) T Consensus 97 e~l~~~~----------~L~~~l~~~~~~~------------------------~~~~~~l~~~vg~~i~~~H------- 135 (206) T pfam06293 97 ERLEGAQ----------DLVTWLAQWADPA------------------------EELRRALWRAVGRLIARMH------- 135 (206) T ss_pred HHCCCCH----------HHHHHHHHCCCCC------------------------HHHHHHHHHHHHHHHHHHH------- T ss_conf 1356842----------0999986134445------------------------3678999999999999999------- Q ss_pred CCCEEECCCCCCCEEECCC----CCEEEECCCCCCCC-----HHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 7744402234642256279----60487316213568-----000198999986431168887878899999887 Q gi|254780795|r 183 PTGIIHADLFPDNVLFYNN----KIMGLIDFYFSCND-----FLMYDLSICINAWCFDENNTYNPSRGFSILNGY 248 (316) Q Consensus 183 p~g~IHgDl~~~NiL~~~~----~i~giIDF~~~~~~-----~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY 248 (316) T Consensus 136 ~~gi~H~DL~~~nIll~~~~~~~~~-~LIDldr~~~r~~~~~~~~~dL~rL~rS~---~~~~~~~~dw~~~l~~Y 206 (206) T pfam06293 136 RAGVNHTDLNAHNILLDTGEGGFKV-WLIDFDKCRRRLRGDRWREKDLARLKRSF---LSIGLTEADWARLLSAY 206 (206) T ss_pred HCCCCCCCCCCEEEEEECCCCCCEE-EEEECCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHC T ss_conf 8768458999000898179987539-99987667056887138898799999765---00899999999999639

HHsearch alignment for GI: 254780795 and conserved domain: pfam06293