HHsearch alignment for GI: 254780795 and conserved domain: pfam07914
>pfam07914 DUF1679 Protein of unknown function (DUF1679). The region featured in this family is found in a number of C. elegans proteins, in one case as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in ZnF_C4 and HLH domain-containing kinases. In fact, one member of this family is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (Interpro:IPR000536, Interpro:IPR008946, and Interpro:IPR001628).
Probab=99.20 E-value=9.8e-10 Score=82.62 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHH-CC----CCCEEEEEECCCC--CEEEEEEEEE-----CC-----CCEEEEEEC-------------
Q ss_conf 70899999999984-89----9860531004668--1200179994-----39-----958999821-------------
Q gi|254780795|r 5 THPPQKEIQSFVQE-YA----IGQLNSVQPIIHG--VENSNFVIQT-----SK-----GTFILTIYE------------- 54 (316)
Q Consensus 5 t~ls~~el~~il~~-y~----lg~~~~~~~i~~G--~~Ntny~v~t-----~~-----~~yiLri~e------------- 54 (316)
T Consensus 11 THVtweDVe~~iq~~~~T~ak~G~n~k~~nI~D~~GFmSrI~lVe~dW~~~~~~~~LP~kf~lKIsS~l~~~~l~~~~~~ 90 (413)
T pfam07914 11 THVTWEDVEKAIQEQLGTEAKFGENKKATNIGDGKGFMSRIALVEPDWTNVEPSKNLPKKFALKISSQLALVALSKKMKF 90 (413)
T ss_pred CEEEHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHC
T ss_conf 50459999999999848876216884366653673544503686048603787766874179985035779999999741
Q ss_pred ---CCCCHHH-HHHHHH--------------HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC----CC
Q ss_conf ---6699889-999999--------------9999853267755510010267787522451557864788707----68
Q gi|254780795|r 55 ---KRMNEKD-LPVFIE--------------LLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPL----NH 112 (316)
Q Consensus 55 ---~~~~~~~-l~~~~~--------------ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~----~~ 112 (316)
T Consensus 91 ~~~~~~~~e~~~~~f~~~~~~~HNrEVn~Ykil~k~n~~~i~~pKVY~~kkfd--~en~~KG~IimE~v~ni~~~~~y~n 168 (413)
T pfam07914 91 EGGNGFTEEKELKHFESSTRELHNREVNFYKILEKFNHPDIPYTKVYFLKKFD--DENDLKGYIIMEYVPNIHTRHMYEN 168 (413)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC--CCCCCCCEEEEEECCCCEEEECCCC
T ss_conf 37788876899999999878765479999999997068789874012302456--5677777788882488468725489
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHH-------------HHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998999999998643675306875433231-12456457667-------------5200155227889999999888765
Q gi|254780795|r 113 ISDIHCEEIGSMLASMHQKTKNFHLYRKNT-LSPLNLKFLWA-------------KCFDKVDEDLKKEIDHEFCFLKESW 178 (316)
Q Consensus 113 ~~~~~~~~lG~~La~lH~~~~~f~~~r~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~ 178 (316)
T Consensus 169 i~~deL~~vv~~iA~fqA~~~~LseEE~k~i~g~df~~~~~~~~~~~~~~~~~f~~lr~~~g~~~~ekv~e~~~~~~~y~ 248 (413)
T pfam07914 169 IPADELIPVLRAIATFQALGESLSEEEKKSANGADFLEQMFETFMSEEGLKGIFDQLRNIFGAEYPEKVEELVDIFEHYG 248 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_conf 89899999999999999864349989975356757999999987236779999999975411123899987789998737
Q ss_pred ------------HH--CCCCCEEECCCCCCCEEECCC-----CCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHH
Q ss_conf ------------21--077744402234642256279-----60487316213568000198999986431168887878
Q gi|254780795|r 179 ------------PK--NLPTGIIHADLFPDNVLFYNN-----KIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPS 239 (316)
Q Consensus 179 ------------~~--~Lp~g~IHgDl~~~NiL~~~~-----~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~ 239 (316)
T Consensus 249 ~~~~~~~k~~ni~~~lG~k~Vl~HgDlw~~NiL~~~~~~g~~~~~aiID~Q~~~~g~p~~Dl~rl~~~-~ls~~d--R~~ 325 (413)
T pfam07914 249 PEILIFKKYTNLSKVLGIKPVLVHGDLWQSNILWSLDNDGKLKLKAIIDYQTVHMGNPAEDLVRLLLS-CLSGAD--RRA 325 (413)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCEEHHEEEHHHHCCCCHHHHHHHHHHH-CCCHHH--HHH
T ss_conf 23445898874787518754410475157650121377876000111110120568848889999983-598888--998
Q ss_pred HHHHHHHHHHH---------CCCCCHHHHHHHH
Q ss_conf 89999988764---------1889989999999
Q gi|254780795|r 240 RGFSILNGYNK---------VRKISENELQSLP 263 (316)
Q Consensus 240 ~~~~~l~gY~~---------vrpLs~~E~~~l~ 263 (316)
T Consensus 326 ~~~~lL~~y~~~f~~~l~~~~~p~t~eqL~~sY 358 (413)
T pfam07914 326 RWEELLEQYYETFTKVLGDNEEPYTLEQLKDSY 358 (413)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 799999999999998748888986899999999