RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus
Liberibacter asiaticus str. psy62]
(316 letters)
>gnl|CDD|179968 PRK05231, PRK05231, homoserine kinase; Provisional.
Length = 319
Score = 372 bits (958), Expect = e-104
Identities = 126/321 (39%), Positives = 193/321 (60%), Gaps = 7/321 (2%)
Query: 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK 60
MAVYT E+ +F+ Y +G+L S++ I G+ENSNF + T++G ++LT++E R+ +
Sbjct: 1 MAVYTDVSDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQGEYVLTLFE-RLTAE 59
Query: 61 DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE 120
DLP F+ L+ +++ +P P P+ R DG G L KPA I +F++G + HC E
Sbjct: 60 DLPFFLGLMQHLAARGVPVPAPVARRDGAALGELAGKPAAIVTFLEGKWPRAPTAAHCAE 119
Query: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDED----LKKEIDHEFCFLKE 176
+G MLA MH ++F L R N + L + + ++ L+ E+ + FL
Sbjct: 120 VGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLADEQAALLEAELAAQLAFLAS 179
Query: 177 S-WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNT 235
+ WP LP G+IHADLF DNVLF +++ G IDFYF+CND L+YD++I +N WCF+ + +
Sbjct: 180 AAWPA-LPRGVIHADLFRDNVLFEGDRLSGFIDFYFACNDKLLYDVAITLNDWCFEADGS 238
Query: 236 YNPSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDP 295
+ ++ ++L Y VR ++ E +LP +LRGAALRF+L+RLYD AL KDP
Sbjct: 239 LDATKARALLAAYQSVRPLTAAERAALPVMLRGAALRFWLSRLYDWLLPRAGALVKPKDP 298
Query: 296 MEYILKTRFHKQISSISEYGF 316
+E+ K RF + + S YG
Sbjct: 299 LEFERKLRFRRAVVSALPYGL 319
>gnl|CDD|162121 TIGR00938, thrB_alt, homoserine kinase, Neisseria type. Homoserine
kinase is required in the biosynthesis of threonine from
aspartate.The member of this family from Pseudomonas
aeruginosa was shown by direct assay and complementation
to act specifically as a homoserine kinase.
Length = 307
Score = 311 bits (798), Expect = 2e-85
Identities = 126/307 (41%), Positives = 192/307 (62%), Gaps = 3/307 (0%)
Query: 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK 60
MAVYT +E+ SF+ Y +G+L S++ I GVENSN+++ T G +ILT+YEKR+ +
Sbjct: 1 MAVYTSVSDEEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVGRYILTLYEKRVKAE 60
Query: 61 DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE 120
+LP F+ L +++ LP P P+ DG+ L KPA + F++G + + +HC
Sbjct: 61 ELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACLVEFLQGLSVGRPTAMHCRP 120
Query: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFD---KVDEDLKKEIDHEFCFLKES 177
+G +LA MH +F RKN+L L KCF+ +++ + E+D E +L +
Sbjct: 121 VGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKELDYLDKF 180
Query: 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYN 237
WP++LP G+IHADLFPDNVLF + + G+IDFYF+C D YDL+I +NAWCFD ++ ++
Sbjct: 181 WPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFACTDARAYDLAITVNAWCFDADDHFD 240
Query: 238 PSRGFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPME 297
+++ GY++ R ++E E + P LLRGAA+RF LTRL+D P AL + KDP +
Sbjct: 241 ADHAKALIKGYHQSRPLTEEEKAAFPVLLRGAAMRFLLTRLWDWVFTPAGALVVPKDPRD 300
Query: 298 YILKTRF 304
+ + RF
Sbjct: 301 FERRLRF 307
>gnl|CDD|178464 PLN02876, PLN02876, acyl-CoA dehydrogenase.
Length = 822
Score = 33.6 bits (77), Expect = 0.076
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 173 FLKESWPKN----LPTGIIHADLFPDNVLFY--NNKIMGLIDFYFSCNDFLMYDLSICIN 226
+L+E+ P TGI+H D DN++F+ ++++G++D+ S M D++
Sbjct: 210 WLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQMCDVAYSCL 269
Query: 227 AWCFDEN-NTYNPSRGF 242
+ D N + +GF
Sbjct: 270 PYIVDINLDNQQVGKGF 286
>gnl|CDD|184879 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 33.0 bits (76), Expect = 0.11
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 185 GIIHADLFPDNVLFYNNKIMGLIDF 209
GIIH DL N++ KI LIDF
Sbjct: 115 GIIHGDLTTSNMILSGGKIY-LIDF 138
>gnl|CDD|185545 PTZ00296, PTZ00296, choline kinase; Provisional.
Length = 442
Score = 32.9 bits (75), Expect = 0.12
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFL--WA------KCFDKVDEDLKKEIDHEFC 172
I ++L H ++ HL +P K + W K +K D+ K I
Sbjct: 207 IANVLGKFHTLSRKRHLPEHWDRTPCIFKMMEKWKNQLSKYKNIEKYQRDIHKYIKESEK 266
Query: 173 FLK----ESWPKNLPTGII--HADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLS 222
F+K S NL I+ H DL +N++ NK + LIDF +S +FL D++
Sbjct: 267 FIKFMKVYSKSDNLANDIVFCHNDLQENNII-NTNKCLRLIDFEYSGYNFLATDIA 321
>gnl|CDD|131952 TIGR02906, spore_CotS, spore coat protein, CotS family. Members of
this family include the spore coat proteins CotS and
YtaA from Bacillus subtilis and, from other
endospore-forming bacteria, homologs that are more
closely related to these two than to the spore coat
proteins YutH and YsxE. The CotS family is more broadly
distributed than YutH or YsxE, but still is not
universal among spore-formers.
Length = 313
Score = 32.6 bits (75), Expect = 0.12
Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 43/257 (16%)
Query: 39 FVIQTSKGTFILTIYEKRMN-EKDLPVFIELLH-YISRNKLPCPIPIPRNDGKLYGFLCK 96
+ ++T G L K++N + +FI ++ +N P + DG+LY
Sbjct: 13 YKVETDSGNKCL----KKINYPPERLLFILGAQEHLRKNGFNIPKILKTKDGELYVKYNG 68
Query: 97 KPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCF 156
+ +I+G + + I ++ LA H +K + + + L W K F
Sbjct: 69 DLYVLTEWIEGRECDFNNPIDLKKAAKGLALFHHASKGY-VPPDGSKIRSKL-GKWPKQF 126
Query: 157 DKVDEDL--------KKEIDHEF--CFLKE---------------------SWPKNLPT- 184
+K ++L +K+ EF +LKE K
Sbjct: 127 EKRLKELERFKKIALEKKYKDEFDKLYLKEVDYFLERGKKALELLNKSKYYDLCKEAKKI 186
Query: 185 -GIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFS 243
G H D N+L +N++ +IDF + D + DL I +N ++ +
Sbjct: 187 RGFCHQDYAYHNILLKDNEVY-VIDFDYCTIDLPVRDLRKLIIK-LMKKNGVWDLEKAKE 244
Query: 244 ILNGYNKVRKISENELQ 260
I+ Y+ + +S+ E +
Sbjct: 245 IIEAYSSINPLSKEEKE 261
>gnl|CDD|128517 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 225
Score = 32.7 bits (75), Expect = 0.15
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 185 GIIHADLFPDNVLFYNNKIMGLIDFYFSC 213
GI+H DL P+N+L + ++ L DF +
Sbjct: 118 GIVHRDLKPENILLGMDGLVKLADFGLAR 146
>gnl|CDD|163436 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine.
Length = 199
Score = 31.8 bits (73), Expect = 0.25
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 185 GIIHADLFPDNVLFYNNKIMGLIDF---YFSC 213
GI+H DL N++ ++K+ LIDF +S
Sbjct: 110 GIVHGDLTTSNIIVRDDKLY-LIDFGLGKYSD 140
>gnl|CDD|128516 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 244
Score = 31.4 bits (72), Expect = 0.30
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 GIIHADLFPDNVLFYNNKIMGLIDF 209
GIIH DL P+N+L + + L DF
Sbjct: 107 GIIHRDLKPENILLDEDGHVKLADF 131
>gnl|CDD|152392 pfam11957, efThoc1, THO complex subunit 1 transcription elongation
factor. The THO complex is a nuclear complex that is
required for transcription elongation through genes
containing tandemly repeated DNA sequences. The THO
complex is also part of the TREX (TRanscription EXport)
complex that is involved in coupling transcription to
export of mRNAs to the cytoplasm.
Length = 464
Score = 30.5 bits (69), Expect = 0.53
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 139 RKNTLSPLNLKFLWAKCFDKVDEDLKKE 166
R+ + L L LW D + + LKK
Sbjct: 383 RRFPMGSLELSRLWNDEPDNILQALKKP 410
>gnl|CDD|181985 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 30.2 bits (69), Expect = 0.75
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 185 GIIHADLFPDNVLFYNNKIMGLIDF---YFSC 213
GI+H DL N + ++++ LIDF +S
Sbjct: 448 GIVHGDLTTSNFIVRDDRLY-LIDFGLGKYSD 478
Score = 27.9 bits (63), Expect = 3.7
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 68 LLHYISRNKLPCPI--PIPRNDGKLYGFLCKKPANIFSFIKGSPLNHI---SDIHCEEIG 122
LL R +P P+ + + + + +I G L + + ++G
Sbjct: 389 LLSEARRAGVPTPVIYDVDPEEKTI----------VMEYIGGKDLKDVLEGNPELVRKVG 438
Query: 123 SMLASMH 129
++A +H
Sbjct: 439 EIVAKLH 445
>gnl|CDD|163308 TIGR03529, GldK_short, gliding motility-associated lipoprotein
GldK. Members of this protein family are exclusive to
the Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldK is a
lipoprotein linked to a type of rapid surface gliding
motility found in certain Bacteroidetes, such as
Flavobacterium johnsoniae. Knockouts of GldK abolish the
gliding phenotype. GldK is homologous to GldJ. This
model represents a GldK homolog in Cytophaga
hutchinsonii and several other species that has a
different, shorter architecture than that found in
Flavobacterium johnsoniae and related species
(represented by (TIGR03525). Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 344
Score = 29.5 bits (66), Expect = 1.0
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 24/84 (28%)
Query: 185 GIIHADLFPDNVLFYNNKIM--GLIDFYFSCNDFLMYDLSICINAWCFDE---------- 232
G + A+ P +Y++ + YF NDF +YD++ + W D
Sbjct: 227 GCMLANFKPGRGNYYDDGFPYTAPVAVYFP-NDFGLYDMAGNVAEWVLDAYAATSVPIVW 285
Query: 233 --NNTYNPSRGFSILNGYNKVRKI 254
N Y N+VRKI
Sbjct: 286 DLNPVYEDP---------NEVRKI 300
>gnl|CDD|182098 PRK09828, PRK09828, putative fimbrial outer membrane usher protein;
Provisional.
Length = 865
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 23 QLNSVQPIIHGVENSNFVIQTSKGTFILTIYE 54
L S PII GV NSN + ++ + IYE
Sbjct: 279 GLASYAPIIRGVANSNAKVTITQSGY--KIYE 308
>gnl|CDD|132519 TIGR03479, DMSO_red_II_alp, DMSO reductase family type II enzyme,
molybdopterin subunit. This model represents the
molybdopterin subunit, typically called the alpha
subunit, of various proteins that also contain an
iron-sulfur subunit and a heme b subunit. The group
includes two distinct but very closely related
periplasmic proteins of anaerobic respiration, selenate
reductase and chlorate reductase. Other members of this
family include dimethyl sulphide dehydrogenase,
ethylbenzene dehydrogenase, and an archaeal respiratory
nitrate reductase. This alpha subunit has a
twin-arginine translocation (TAT) signal for
Sec-independent translocation across the plasma
membrane.
Length = 912
Score = 28.6 bits (64), Expect = 2.4
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 17/79 (21%)
Query: 177 SWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTY 236
+L TG H + + +D+ D I W + + T
Sbjct: 197 DDYGDLYTGAFHT---------FGKAHDS-----ATSDDWFNADY---IIMWGSNPSVTR 239
Query: 237 NPSRGFSILNGYNKVRKIS 255
P F YN R +S
Sbjct: 240 IPDAHFLSEARYNGARVVS 258
>gnl|CDD|178764 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 28.2 bits (63), Expect = 3.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 184 TGIIHADLFPDNVLF 198
TGI+H D+ P N++F
Sbjct: 274 TGIVHRDVKPQNIIF 288
>gnl|CDD|178046 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 27.0 bits (60), Expect = 6.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 7/29 (24%)
Query: 290 TITKDP--MEYILKTRFH-----KQISSI 311
TIT +P +EY+LKTRF K S+I
Sbjct: 86 TITANPENVEYMLKTRFDNYPKGKPFSAI 114
>gnl|CDD|178737 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 27.1 bits (60), Expect = 7.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 284 MPCNALTITKDP--MEYILKTRF 304
MP T DP +E++LKT F
Sbjct: 72 MPFTTYTYIADPVNVEHVLKTNF 94
>gnl|CDD|140300 PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional.
Length = 325
Score = 26.8 bits (59), Expect = 7.4
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 2 AVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVI 41
A++ + + F Q Y QL V PI H F++
Sbjct: 35 ALHFRNKPRPGRVFSQRYEPYQLGEVIPITHDTALFRFLL 74
>gnl|CDD|173576 PTZ00384, PTZ00384, choline kinase; Provisional.
Length = 383
Score = 26.7 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 188 HADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLS 222
H DLF N+L +N I IDF F+ +++ ++++
Sbjct: 231 HNDLFFTNILDFNQGIY-FIDFDFAGFNYVGWEIA 264
>gnl|CDD|129562 TIGR00470, sepS, O-phosphoseryl-tRNA(Cys) synthetase. This family
of archaeal proteins resembles known phenylalanyl-tRNA
synthetase alpha chains. Recently, it was shown to act
in a proposed pathway of tRNA(Cys) indirect
aminoacylation, resulting in Cys biosynthesis from
O-phosphoserine, in certain archaea. It charges
tRNA(Cys) with O-phosphoserine. The pscS gene product
converts the phosphoserine to Cys.
Length = 533
Score = 26.4 bits (58), Expect = 9.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 135 FHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWP 179
FHLY+K + +L F AK + +E K ++ F K+ P
Sbjct: 134 FHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKP 178
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,169,678
Number of extensions: 326966
Number of successful extensions: 555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 32
Length of query: 316
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 223
Effective length of database: 3,984,929
Effective search space: 888639167
Effective search space used: 888639167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)