BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (316 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 316

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK 60
           MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK
Sbjct: 1   MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK 60

Query: 61  DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE 120
           DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE
Sbjct: 61  DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE 120

Query: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180
           IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK
Sbjct: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180

Query: 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR 240
           NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR
Sbjct: 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR 240

Query: 241 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYIL 300
           GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYIL
Sbjct: 241 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYIL 300

Query: 301 KTRFHKQISSISEYGF 316
           KTRFHKQISSISEYGF
Sbjct: 301 KTRFHKQISSISEYGF 316


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score = 28.1 bits (61), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 118 CEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKK----EIDHEFCF 173
           C  I + +A +  K     +   N LS L ++++  + F  +   L      + D  FC 
Sbjct: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242

Query: 174 LKESWPKNLPTG 185
           LKE + K L  G
Sbjct: 243 LKEEYAKKLFDG 254


>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 419

 Score = 26.9 bits (58), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 226 NAWCFDENNTYNPSRGFSILN-GYNKVRKISENELQSLPTLLRGAALRFFL 275
           N WC   N  +  SR + +   G +KV     +E+ SL   ++GA +RF++
Sbjct: 211 NQWCV--NKMFEISRTYDLPTVGQHKVYLSGHDEIHSLFKNIQGADIRFWM 259


>gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 212

 Score = 23.5 bits (49), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 100 NIFSFIKGSPLNHISDIHCEEIGSMLA 126
           N+F+ ++  PL  I      EIG +LA
Sbjct: 19  NLFTGLRNPPLTSIGMSEANEIGKLLA 45


>gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 108

 Score = 23.1 bits (48), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 43 TSKGTFILTIYEKRMNEKDLPVFIELLHYISR 74
          +S  +F+  ++E+    +DLPV+   L Y+SR
Sbjct: 56 SSDYSFVNDLWERLKYLRDLPVYNFSLDYVSR 87


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.140    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,225
Number of Sequences: 1233
Number of extensions: 10009
Number of successful extensions: 27
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 316
length of database: 328,796
effective HSP length: 74
effective length of query: 242
effective length of database: 237,554
effective search space: 57488068
effective search space used: 57488068
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 38 (19.2 bits)