BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62] (316 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%) Query: 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK 60 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK Sbjct: 1 MAVYTHPPQKEIQSFVQEYAIGQLNSVQPIIHGVENSNFVIQTSKGTFILTIYEKRMNEK 60 Query: 61 DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE 120 DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE Sbjct: 61 DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEE 120 Query: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK Sbjct: 121 IGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 Query: 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR 240 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR Sbjct: 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSR 240 Query: 241 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYIL 300 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYIL Sbjct: 241 GFSILNGYNKVRKISENELQSLPTLLRGAALRFFLTRLYDSQNMPCNALTITKDPMEYIL 300 Query: 301 KTRFHKQISSISEYGF 316 KTRFHKQISSISEYGF Sbjct: 301 KTRFHKQISSISEYGF 316 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 28.1 bits (61), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 118 CEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKK----EIDHEFCF 173 C I + +A + K + N LS L ++++ + F + L + D FC Sbjct: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242 Query: 174 LKESWPKNLPTG 185 LKE + K L G Sbjct: 243 LKEEYAKKLFDG 254 >gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter asiaticus str. psy62] Length = 419 Score = 26.9 bits (58), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Query: 226 NAWCFDENNTYNPSRGFSILN-GYNKVRKISENELQSLPTLLRGAALRFFL 275 N WC N + SR + + G +KV +E+ SL ++GA +RF++ Sbjct: 211 NQWCV--NKMFEISRTYDLPTVGQHKVYLSGHDEIHSLFKNIQGADIRFWM 259 >gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] Length = 212 Score = 23.5 bits (49), Expect = 4.5, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 100 NIFSFIKGSPLNHISDIHCEEIGSMLA 126 N+F+ ++ PL I EIG +LA Sbjct: 19 NLFTGLRNPPLTSIGMSEANEIGKLLA 45 >gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] Length = 108 Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 43 TSKGTFILTIYEKRMNEKDLPVFIELLHYISR 74 +S +F+ ++E+ +DLPV+ L Y+SR Sbjct: 56 SSDYSFVNDLWERLKYLRDLPVYNFSLDYVSR 87 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.140 0.436 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,225 Number of Sequences: 1233 Number of extensions: 10009 Number of successful extensions: 27 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 6 length of query: 316 length of database: 328,796 effective HSP length: 74 effective length of query: 242 effective length of database: 237,554 effective search space: 57488068 effective search space used: 57488068 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 38 (19.2 bits)