HHsearch alignment for GI: 254780796 and conserved domain: pfam00075

>pfam00075 RnaseH RNase H. RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers.
Probab=100.00  E-value=3.2e-35  Score=218.25  Aligned_cols=123  Identities=42%  Similarity=0.629  Sum_probs=97.3

Q ss_pred             CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCH
Q ss_conf             88899996647579998218999996188127860222766302789999998641134540378840645503256522
Q gi|254780796|r    6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQW   85 (152)
Q Consensus         6 ~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~   85 (152)
T Consensus         1 ~~~i~vytDGs~~~n~g~~g~g~~~~~~~---~~~~~~~~~TNn~aEl~Al~~aL~~~~-~~~v~I~tDS~yvi~~i~~-   75 (126)
T pfam00075         1 PEAVTVYTDGSCNGNPGTGGAGYVTDGGK---QRSKPLPGTTNQRAELLALIEALEALS-GQKVNIYTDSQYVIGGILN-   75 (126)
T ss_pred             CCCEEEEEECCCCCCCCCEEEEEEEECCE---EEEEECCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHC-
T ss_conf             99759996079999998889999998890---898645886589999999999998578-9809999736999999967-


Q ss_pred             HHHHHHHHHHC-CCCCCCCCCHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             56776543200-3556421100023454102-221055898017888845589999999999
Q gi|254780796|r   86 IKKWQQNGWKT-SDKKTVKNIDLWMKFVEAS-AQHKVDLYWIKGHAGNQENEKVDRIARNAA  145 (152)
Q Consensus        86 ~~~W~~n~wk~-~~~~~v~N~dl~~~l~~l~-~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa  145 (152)
T Consensus        76 -------~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~V~gH~g~~gNe~AD~LA~~aa  125 (126)
T pfam00075        76 -------GWPTKSESKP-----IKNEIWELLLKKHAVYIQWVPGHSGIPGNELADKLAKQGA  125 (126)
T ss_pred             -------CCCCCCCCCH-----HHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf             -------6753644444-----7999999862477379998457789930789999999765