HHsearch alignment of GI: 254780796 and MMDB domain: 2hb5_A_
>2hb5_A (A:) Reverse transcriptase/ribonuclease H; RNAse H, hydrolase; 1.59A {Moloney murine leukemia virus}
Probab=99.97 E-value=7.9e-31 Score=193.19 Aligned_cols=133 Identities=22% Similarity=0.196 Sum_probs=108.2
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83 (152)
Q Consensus 4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~ 83 (152)
-...+++|||||||++|++.+|+++++...............+|||+|||+|++.+++.. ....+.|||||+||+++++
T Consensus 18 ~~~~~~~iytDGS~~~n~~~~g~~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~~~~~~-~~~~i~i~tDS~~vi~~~~ 96 (164)
T 2hb5_A 18 LPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKXA-EGKKLNVYTDSRYAFATAH 96 (164)
T ss_dssp CTTCSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-BTSEEEEEECCHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEEEEHHHHHHCCC
T ss_conf 899998999867885799954679999969902697225774658899999999999743-1356379960299984131
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-CCCCCEEEEEECCCCCC-----HHHHHHHHHHHHHHHHH
Q ss_conf 2256776543200355642110002345410-22210558980178888-----45589999999999988
Q gi|254780796|r 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEA-SAQHKVDLYWIKGHAGN-----QENEKVDRIARNAAVSF 148 (152)
Q Consensus 84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l-~~~~~v~~~~V~gH~g~-----~~N~~AD~lA~~aa~~~ 148 (152)
.|...|..+.| ..+..+..+ .+...|+|.|||||+|. +||++||+||++|+..-
T Consensus 97 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~wVpgHs~~~~~~~~gNe~AD~LA~~aa~~~ 156 (164)
T 2hb5_A 97 LTSEGKEIKNK-----------DEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRXADQAARKAAITE 156 (164)
T ss_dssp CCCCCSSCTTH-----------HHHHHHHHHTTSBSEEEEEEC-----CCSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHH-----------HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 11357750048-----------9999999998556837999974666788875278999999999998557