HHsearch results for GI: 254780796 and protein with PDBid: 1jl1_A
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 1rbv_A 1rbt_A 1rbs_A 1kva_A 1kvb_A ...
Probab=100.00 E-value=1.1e-43 Score=264.50 Aligned_cols=143 Identities=55% Similarity=0.992 Sum_probs=136.2
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCC
Q ss_conf 78889999664757999821899999618812786022276630278999999864113454037884064550325652
Q gi|254780796|r 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQ 84 (152)
Q Consensus 5 ~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~ 84 (152)
.|+.|.|||||||++|||++|||+|+..++....+++....+|||+|||.|++.||+++.....+.|+|||+|++++++.
T Consensus 1 ~~~~i~IYtDGS~~~N~g~~G~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~Al~~~~~~~~~~i~tds~~~i~~~~~ 80 (155)
T 1jl1_A 1 MLKQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp --CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
T ss_conf 99659999836888999826999999989968999547686657999999998777765224227998416888776568
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 256776543200355642110002345410222105589801788884558999999999998
Q gi|254780796|r 85 WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147 (152)
Q Consensus 85 ~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~ 147 (152)
|+.+|.+++|+.+.+++++|.++++.++.+...++|+|.|||||+|++||++||+||++||..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~wVkgH~g~~gNe~AD~LAk~aa~~ 143 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMN 143 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 998988568170556613139999999999751772169835769985079999999999718