HHsearch results for GI: 254780796 and protein with PDBid: 1rw3_A

>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2

Probab=93.21  E-value=0.013  Score=33.68  Aligned_cols=64  Identities=9%  Similarity=-0.080  Sum_probs=38.4

Q ss_pred             EEEEECCCCCCCCCCCEEEEEEECC-C-CEEE---EE----CCCCCCCHHHHHHHHHHHHHHCCC---CCCEEEEECCHH
Q ss_conf             9999664757999821899999618-8-1278---60----222766302789999998641134---540378840645
Q gi|254780796|r    9 VHAYTDGACSGNPGPGGWGVLLRYK-G-KEKI---IS----GGEKETTNNRMELMAAIKALTALK---YPCKVLLYTDSS   76 (152)
Q Consensus         9 i~IytDGS~~~n~~~aG~g~v~~~~-~-~~~~---~~----~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~~i~I~tDS~   76 (152)
                      ..|+||.|..      |+|+++... + ....   .+    ..+..-+.+.-||.|++.||+...   .+.+++|+||.+
T Consensus       347 ~~l~tDAS~~------g~gavL~Q~~~~~~~pI~f~Sr~l~~aE~~Y~~~ekEllAi~~al~~~~~~l~g~~~~v~TDh~  420 (455)
T 1rw3_A          347 FELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA  420 (455)
T ss_dssp             TSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred             EEEEEECCCC------CCEEEEEEECCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             7999813668------7736999975998789999988699778786499999999999999999985897489997875


Q ss_pred             HC
Q ss_conf             50
Q gi|254780796|r   77 YV   78 (152)
Q Consensus        77 yv   78 (152)
                      ..
T Consensus       421 ~l  422 (455)
T 1rw3_A          421 VE  422 (455)
T ss_dssp             TT
T ss_pred             HH
T ss_conf             89