HHsearch results for GI: 254780796 and protein with PDBid: 2e4l_A
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis mr-1} PDB: 2zqb_A
Probab=100.00 E-value=9.1e-41 Score=248.20 Aligned_cols=146 Identities=50% Similarity=0.973 Sum_probs=136.3
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83 (152)
Q Consensus 4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~ 83 (152)
+-|+-|+|||||||++|||++|||+|+..++....+......+|||+||+.|++.||++++....+.|+|||++++.+++
T Consensus 2 ~~~~~i~iYtDGS~~~n~g~~G~gvvi~~~~~~~~~~~~~~~~tn~~aE~~a~~~aL~~~~~~~~v~i~tds~~~~~~~~ 81 (158)
T 2e4l_A 2 TELKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKEPCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp --CCEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSSCCEEEEEECCHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
T ss_conf 97867999961588999982699999994880799845778861899999999999997005884999821798874100
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 225677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149 (152)
Q Consensus 84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k 149 (152)
.+..+|..++|+.....++++.+||+++..+.+.++|+|+|||||+|++|||+||+|||+|+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~ 147 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARAAAEANP 147 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 133444422255505654016999876776424665879977766996648999999999986699