Query gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs 114 out of 2571
Neff 7.1
Searched_HMMs 23785
Date Mon May 30 12:51:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780796.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jl1_A Ribonuclease HI; RNAse 100.0 1.1E-43 0 264.5 12.0 143 5-147 1-143 (155)
2 2e4l_A Ribonuclease HI, RNAse 100.0 9.1E-41 4.2E-45 248.2 11.9 146 4-149 2-147 (158)
3 1ril_A Ribonuclease H; hydrola 100.0 6.4E-41 2.8E-45 249.0 7.1 148 1-148 1-149 (166)
4 2qkb_A Ribonuclease H1, HS-RNA 100.0 1.2E-40 4.2E-45 247.6 8.0 146 4-149 2-153 (154)
5 3h08_A RNH (ribonuclease H); R 100.0 1.2E-39 4.9E-44 242.0 11.3 141 7-147 3-144 (146)
6 3hyf_A Reverse transcriptase/r 100.0 1.6E-39 6.7E-44 241.2 9.8 140 2-146 5-146 (150)
7 3p1g_A Xenotropic murine leuke 100.0 3E-32 1.3E-36 200.3 11.6 129 8-148 23-157 (165)
8 1mu2_A HIV-2 RT; HIV-2 reverse 100.0 1.9E-30 7.8E-35 190.2 9.6 119 7-144 435-554 (555)
9 1zbf_A Ribonuclease H-related 100.0 4.2E-31 1.8E-35 193.9 -0.0 123 9-138 12-138 (142)
10 2kq2_A Ribonuclease H-related 100.0 1E-29 4.2E-34 186.2 5.9 124 6-146 4-136 (147)
11 2zd1_A Reverse transcriptase/r 99.9 9.8E-29 4.1E-33 180.6 6.0 119 7-144 438-557 (557)
12 3hst_B Protein RV2228C/MT2287; 99.9 4.5E-28 1.9E-32 176.8 8.5 128 8-150 3-136 (141)
13 2ehg_A Ribonuclease HI; RNAse 99.9 1.7E-26 7E-31 168.0 8.1 127 9-150 2-137 (149)
14 1rw3_A POL polyprotein; RNA an 93.2 0.013 5.6E-07 33.7 0.1 64 9-78 347-422 (455)
15 2hxv_A Diaminohydroxyphosphori 40.2 19 0.00079 16.0 6.0 42 15-61 30-72 (360)
16 1c4k_A Protein (ornithine deca 26.0 13 0.00056 16.8 0.3 19 120-138 539-557 (730)
17 2vyc_A Biodegradative arginine 22.3 16 0.00066 16.4 0.1 21 120-140 578-598 (755)
No 1
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 1rbv_A 1rbt_A 1rbs_A 1kva_A 1kvb_A ...
Probab=100.00 E-value=1.1e-43 Score=264.50 Aligned_cols=143 Identities=55% Similarity=0.992 Sum_probs=136.2
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCC
Q ss_conf 78889999664757999821899999618812786022276630278999999864113454037884064550325652
Q gi|254780796|r 5 HLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQ 84 (152)
Q Consensus 5 ~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~ 84 (152)
.|+.|.|||||||++|||++|||+|+..++....+++....+|||+|||.|++.||+++.....+.|+|||+|++++++.
T Consensus 1 ~~~~i~IYtDGS~~~N~g~~G~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~Al~~~~~~~~~~i~tds~~~i~~~~~ 80 (155)
T 1jl1_A 1 MLKQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp --CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
T ss_conf 99659999836888999826999999989968999547686657999999998777765224227998416888776568
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 256776543200355642110002345410222105589801788884558999999999998
Q gi|254780796|r 85 WIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147 (152)
Q Consensus 85 ~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~ 147 (152)
|+.+|.+++|+.+.+++++|.++++.++.+...++|+|.|||||+|++||++||+||++||..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~wVkgH~g~~gNe~AD~LAk~aa~~ 143 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMN 143 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 998988568170556613139999999999751772169835769985079999999999718
No 2
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis mr-1} PDB: 2zqb_A
Probab=100.00 E-value=9.1e-41 Score=248.20 Aligned_cols=146 Identities=50% Similarity=0.973 Sum_probs=136.3
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCC
Q ss_conf 77888999966475799982189999961881278602227663027899999986411345403788406455032565
Q gi|254780796|r 4 KHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFS 83 (152)
Q Consensus 4 ~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~ 83 (152)
+-|+-|+|||||||++|||++|||+|+..++....+......+|||+||+.|++.||++++....+.|+|||++++.+++
T Consensus 2 ~~~~~i~iYtDGS~~~n~g~~G~gvvi~~~~~~~~~~~~~~~~tn~~aE~~a~~~aL~~~~~~~~v~i~tds~~~~~~~~ 81 (158)
T 2e4l_A 2 TELKLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKEPCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp --CCEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSSCCEEEEEECCHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH
T ss_conf 97867999961588999982699999994880799845778861899999999999997005884999821798874100
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 225677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r 84 QWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149 (152)
Q Consensus 84 ~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k 149 (152)
.+..+|..++|+.....++++.+||+++..+.+.++|+|+|||||+|++|||+||+|||+|+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~ 147 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARAAAEANP 147 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 133444422255505654016999876776424665879977766996648999999999986699
No 3
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=100.00 E-value=6.4e-41 Score=249.04 Aligned_cols=148 Identities=53% Similarity=0.935 Sum_probs=137.1
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 97777888999966475799982189999961881278602227663027899999986411345403788406455032
Q gi|254780796|r 1 MDSKHLREVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80 (152)
Q Consensus 1 ~~~~~~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~ 80 (152)
|.+.+++.|+|||||||++|||++|||+|+..++....+++.....|||+||+.|++.||++++....+.|+|||+|+++
T Consensus 1 ~~p~~~~~i~iYtDGS~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~tnn~aEl~ai~~al~~l~~~~~v~~~~ds~~~~~ 80 (166)
T 1ril_A 1 MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKK 80 (166)
T ss_dssp -----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
T ss_conf 99887886899986788899997389999997891367435767663799999999999997077874999967489750
Q ss_pred CCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 56522-567765432003556421100023454102221055898017888845589999999999988
Q gi|254780796|r 81 GFSQW-IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSF 148 (152)
Q Consensus 81 ~i~~~-~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~ 148 (152)
+++.+ ...|.+++|.+..+++++|.++|++++.+++.+.|+|+|||||+|++|||+||+|||+||.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~V~~~wV~gHsg~~gNe~AD~LAk~aa~~~ 149 (166)
T 1ril_A 81 AFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp HHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred HCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 031044443244044530476332599999999985138547999277699753899999999999834
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=100.00 E-value=1.2e-40 Score=247.60 Aligned_cols=146 Identities=31% Similarity=0.467 Sum_probs=125.1
Q ss_pred CCCCE-EEEEECCCCCCCCCCCEEEEEEE---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCHHH
Q ss_conf 77888-99996647579998218999996---188127860222766302789999998641134--5403788406455
Q gi|254780796|r 4 KHLRE-VHAYTDGACSGNPGPGGWGVLLR---YKGKEKIISGGEKETTNNRMELMAAIKALTALK--YPCKVLLYTDSSY 77 (152)
Q Consensus 4 ~~~~~-i~IytDGS~~~n~~~aG~g~v~~---~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~--~~~~i~I~tDS~y 77 (152)
+||.+ |+|||||||.+||+++|+|+++. ............+.+|||+|||.|++.||+++. ...++.|+|||+|
T Consensus 2 ~~m~~~i~vYtDGS~~~n~~~~g~ag~~v~~~~~~~~~~~~~~~~~~tn~~aEl~Ai~~aL~~~~~~~~~~v~i~tDs~~ 81 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMF 81 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 98888499998688678989997279999935887436752358887189999999999999875248842899706278
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 032565225677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r 78 VHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK 149 (152)
Q Consensus 78 vv~~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k 149 (152)
++++++.|+..|++++|+++.+++++|.+||+++.++...++|+|.|||||+|++||++||+|||+|+.+.+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~n~~l~~~l~~l~~~~~v~~~wV~gH~g~~gNe~AD~LAk~aa~~~~ 153 (154)
T 2qkb_A 82 TINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSE 153 (154)
T ss_dssp HHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 887777788898874022026873037999998898743663899981798999317999999999987024
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=100.00 E-value=1.2e-39 Score=242.00 Aligned_cols=141 Identities=51% Similarity=0.899 Sum_probs=131.7
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCC-H
Q ss_conf 889999664757999821899999618812786022276630278999999864113454037884064550325652-2
Q gi|254780796|r 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQ-W 85 (152)
Q Consensus 7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~-~ 85 (152)
+.|+|||||||.+||+++|||+|+..++....+++....+|||++|+.|++.||+++.....+.|+|||+|++.+++. +
T Consensus 3 ~~i~vYtDGS~~~n~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~~e~~a~~~al~~~~~~~~v~i~tds~~~~~~~~~~~ 82 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKEPARVQLYSDSAYLVNAMNEGW 82 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSSCCEEEEEESCHHHHHHHHSSH
T ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECHHHHH
T ss_conf 60899980789999996389999997998799843788886699999999999874577773799852142231023688
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 56776543200355642110002345410222105589801788884558999999999998
Q gi|254780796|r 86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS 147 (152)
Q Consensus 86 ~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~ 147 (152)
+..|.+++|.+..++++.|.+||++++++++.++|+|.|||||+|++||++||+|||+||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~V~f~wV~gH~g~~gNe~AD~LAk~aa~~ 144 (146)
T 3h08_A 83 LKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88898657041568862138999999998506937999907989981179999999999985
No 6
>3hyf_A Reverse transcriptase/rnaseh; HIV-1, hydrolase, DI-valent metal nucleic acid cleavage mechanism, DI-valent metal coordination; HET: ON1; 1.70A {Human immunodeficiency virus 1} PDB: 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=100.00 E-value=1.6e-39 Score=241.19 Aligned_cols=140 Identities=34% Similarity=0.531 Sum_probs=119.7
Q ss_pred CCCCC-CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCC
Q ss_conf 77778-88999966475799982189999961881278602227663027899999986411345403788406455032
Q gi|254780796|r 2 DSKHL-REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHK 80 (152)
Q Consensus 2 ~~~~~-~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~ 80 (152)
...++ ...++||||||.+|++++|+|+++..+.. ... ....+|||+|||.|++.||+... ..+.|+|||+|+++
T Consensus 5 ~~~p~~~~~t~ytDGS~~~~~~~gg~g~~~~~~~~-~~~--~~~~~tn~~AEL~Ai~~aL~~~~--~~v~I~tDS~~vi~ 79 (150)
T 3hyf_A 5 EKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVV--TLTDTTNQKTELQAIYLALQDSG--LEVNIVTDSQYALG 79 (150)
T ss_dssp CSSCCTTSEEEEEEEEECTTTCCEEEEEEETTSCE-EEE--EESSCCHHHHHHHHHHHHHHHSC--SEEEEEECCHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCE-EEE--CCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECHHHHC
T ss_conf 66898999789983898999987799999966998-983--05877679999999999874077--51599972444403
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56522567765432003556421100023454102-2210558980178888455899999999999
Q gi|254780796|r 81 GFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEAS-AQHKVDLYWIKGHAGNQENEKVDRIARNAAV 146 (152)
Q Consensus 81 ~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~-~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~ 146 (152)
+++.|+++|+.|+|+++.+++++|.++|+++++++ +..+|+|.|||||+|++||+.||+||++|+.
T Consensus 80 ~~~~~~~~w~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~V~~~~V~gH~g~~gNe~AD~LAk~aa~ 146 (150)
T 3hyf_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp HHHHHHHHHHHTCC------CCTTHHHHHHHHHHHTTSSEEEEEECCTTSCCHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4522027887522213568864369999999999837780799990688998528999999999999
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 2hb5_A
Probab=99.98 E-value=3e-32 Score=200.29 Aligned_cols=129 Identities=24% Similarity=0.272 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHHH
Q ss_conf 89999664757999821899999618812786022276630278999999864113454037884064550325652256
Q gi|254780796|r 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWIK 87 (152)
Q Consensus 8 ~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~~ 87 (152)
+++|||||||.+++|++|+|+++..++...........+|||+|||.|++.||+++.. ..+.|||||+|+++.+
T Consensus 23 ~~~iytDGS~~~~~g~~~~g~~i~~~~~~~~~~~~~~~~tn~~aEl~Ai~~Al~~~~~-~~i~I~tDS~~v~~~~----- 96 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEG-KKLNVYTDSRYAFATA----- 96 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTBT-SEEEEEECCHHHHHHH-----
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHH-----
T ss_conf 9899980898799998689999981897279831588765899999999999986215-8279997549998541-----
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCC-CCCEEEEEECCCCCCH-----HHHHHHHHHHHHHHHH
Q ss_conf 77654320035564211000234541022-2105589801788884-----5589999999999988
Q gi|254780796|r 88 KWQQNGWKTSDKKTVKNIDLWMKFVEASA-QHKVDLYWIKGHAGNQ-----ENEKVDRIARNAAVSF 148 (152)
Q Consensus 88 ~W~~n~wk~~~~~~v~N~dl~~~l~~l~~-~~~v~~~~V~gH~g~~-----~N~~AD~lA~~aa~~~ 148 (152)
|....+++++|.+++.++...+. ..+|+|.|||||++.+ ||++||+|||+|+...
T Consensus 97 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~V~gH~~~~~~~~~gNe~AD~lAk~aa~~~ 157 (165)
T 3p1g_A 97 ------HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp ------HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ------1001344166599999999998676881279968988998761153799999999999568
No 8
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.97 E-value=1.9e-30 Score=190.25 Aligned_cols=119 Identities=27% Similarity=0.355 Sum_probs=90.3
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf 88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI 86 (152)
Q Consensus 7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~ 86 (152)
...++||||||.+|++++|+|++. ..+...... ...+|||+|||.|+++||+... ..++|+|||+||+++++.+
T Consensus 435 ~~~~~~tDGs~~~~~~~g~~~~~~-~~~~~~~~~--~~~~tnq~aEl~A~~~al~~~~--~~~~I~tDS~Yv~~~~~~~- 508 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVT-DRGKDKVKK--LEQTTNQQAELEAFAMALTDSG--PKVNIIVDSQYVMGIVASQ- 508 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEE-TTSCEEEEE--ESSCCHHHHHHHHHHHHHHTSC--SEEEEEESCHHHHHHHHTC-
T ss_pred CCCEEEECCCCCCCCCCCEEEEEE-CCCCEEEEE--CCCCCHHHHHHHHHHHHHHHCC--CCEEEEEHHHHHHHHHHHC-
T ss_conf 983388667446799875699995-689556771--8998599999999999999689--9769982559998799729-
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHH-HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 677654320035564211000234-5410222105589801788884558999999999
Q gi|254780796|r 87 KKWQQNGWKTSDKKTVKNIDLWMK-FVEASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144 (152)
Q Consensus 87 ~~W~~n~wk~~~~~~v~N~dl~~~-l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~a 144 (152)
|+ ...+ ++|.+ +.++.....|.|.||+||+|++||++||+||++|
T Consensus 509 -------~~-----~~~~-~~~~~~l~~l~~~~~v~~~hv~~H~g~~gNe~AD~LA~~~ 554 (555)
T 1mu2_A 509 -------PT-----ESES-KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp -------CS-----EESC-HHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred -------CC-----CCCC-HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf -------96-----6524-9999999998578986999917889981389999999711
No 9
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans c-125} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.96 E-value=4.2e-31 Score=193.87 Aligned_cols=123 Identities=22% Similarity=0.216 Sum_probs=104.1
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEEECCHHHCCCCCCCHHH
Q ss_conf 999966475799982189999961881278602227663027899999986411345-4037884064550325652256
Q gi|254780796|r 9 VHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PCKVLLYTDSSYVHKGFSQWIK 87 (152)
Q Consensus 9 i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-~~~i~I~tDS~yvv~~i~~~~~ 87 (152)
..|||||||+||||++|||+|+..++...+.+++.+.+|||+|||+|++.||+++.. ..++.|||||+||++ |+.
T Consensus 12 ~~IytDGa~~GNPG~~G~g~v~~~~~~~~~~~g~~~~~TNN~aEl~Aii~aL~~~~~~~~~~~I~tDS~yvi~----wi~ 87 (142)
T 1zbf_A 12 ESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK----WVK 87 (142)
T ss_dssp SSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTCCCCEEESCHHHHH----HHH
T ss_pred EEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH----HHH
T ss_conf 0799841259998568999999709989999678788763799999999999999857983899976699999----998
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHH---CCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 776543200355642110002345410---222105589801788884558999
Q gi|254780796|r 88 KWQQNGWKTSDKKTVKNIDLWMKFVEA---SAQHKVDLYWIKGHAGNQENEKVD 138 (152)
Q Consensus 88 ~W~~n~wk~~~~~~v~N~dl~~~l~~l---~~~~~v~~~~V~gH~g~~~N~~AD 138 (152)
+|+ |++..+++++|++||+.+.++ +..+.+++.|||+|+..-||..||
T Consensus 88 ~~k---~kt~~~~~vkn~~L~~li~ra~~~lk~h~~~~~~vKW~~~~wgei~Ad 138 (142)
T 1zbf_A 88 DKK---AKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HTC---CCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred HCC---EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 476---304567886319999999999999986757764485225313544556
No 10
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.96 E-value=1e-29 Score=186.15 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=89.2
Q ss_pred CCEEEEEECCCCCCCCCCCEEEEEEECCCCEE-EEECC-----CCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCHHHC
Q ss_conf 88899996647579998218999996188127-86022-----2766302789999998641134-54037884064550
Q gi|254780796|r 6 LREVHAYTDGACSGNPGPGGWGVLLRYKGKEK-IISGG-----EKETTNNRMELMAAIKALTALK-YPCKVLLYTDSSYV 78 (152)
Q Consensus 6 ~~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~-~~~~~-----~~~~Tnn~aEl~Ai~~AL~~~~-~~~~i~I~tDS~yv 78 (152)
..++.|||||||.+ +++|+|+++..++... ...+. ...++|+.|||.|++.||+++. .+.+|+|+|||+++
T Consensus 4 ~~~~~IytDGS~~~--~~~g~G~~i~~~~~~~~~~~~~~~~~~~~~~~n~~aEl~Ai~~AL~~~~~~~~~v~I~tDS~~v 81 (147)
T 2kq2_A 4 RTEYDVYTDGSYVN--GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGVKIRILHDYAGI 81 (147)
T ss_dssp TSCCEEECCCCCBT--TBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTCCCCBSSCCSTH
T ss_pred CCEEEEEEECCCCC--CCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 87599998037889--9878999999899079998412047621011278999999999999998489959999600889
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC--CEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3256522567765432003556421100023454102221--0558980178888455899999999999
Q gi|254780796|r 79 HKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH--KVDLYWIKGHAGNQENEKVDRIARNAAV 146 (152)
Q Consensus 79 v~~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~--~v~~~~V~gH~g~~~N~~AD~lA~~aa~ 146 (152)
++ |..++|++ |.++++.+.+++++. .|+|.|||||+|++||++||+|||+|+.
T Consensus 82 ~~--------~~~~~~k~-------~~~~~~~~~~~~~~~~~~v~~~~V~gH~g~~gNe~AD~LAk~A~~ 136 (147)
T 2kq2_A 82 AF--------WATGEWKA-------KNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALG 136 (147)
T ss_dssp HH--------HTTSSSSC-------CHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HH--------HHHCCCCC-------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 97--------87415431-------638799999999986077259995586997142999999999739
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* 1tvr_A* 2hmi_A* 2vg5_A* ...
Probab=99.95 E-value=9.8e-29 Score=180.57 Aligned_cols=119 Identities=28% Similarity=0.364 Sum_probs=89.4
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf 88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r 7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI 86 (152)
Q Consensus 7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~ 86 (152)
...++||||||.+|++.+|+|++. .++...... ...+|||+|||.|++.||+.. ..+++|||||+||+++++.
T Consensus 438 ~~~~~~tDGs~~~~~~~g~a~~~~-~~~~~~~~~--~~~~Snq~aEl~Av~~AL~~~--~~~~nI~TDS~Yv~~~~~~-- 510 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVT-NKGRQKVVP--LTNTTNQKTELQAIYLALQDS--GLEVNIVTDSQYALGIIQA-- 510 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEE-TTSCEEEEE--ECSCCHHHHHHHHHHHHHHHS--CSEEEEEECCHHHHHHHTT--
T ss_pred CCCEEECCCCCCCCCCCCEEEEEC-CCCCEEEEE--CCCCCHHHHHHHHHHHHHHHC--CCEEEEEEHHHHHHHHHHH--
T ss_conf 760686276345699986899981-798178875--899987999999999999808--9838998413999989862--
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHH-HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67765432003556421100023454-10222105589801788884558999999999
Q gi|254780796|r 87 KKWQQNGWKTSDKKTVKNIDLWMKFV-EASAQHKVDLYWIKGHAGNQENEKVDRIARNA 144 (152)
Q Consensus 87 ~~W~~n~wk~~~~~~v~N~dl~~~l~-~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~a 144 (152)
.|.. ...++|.++. .+.....|.+.||+||+|++||+.||+||+.|
T Consensus 511 ------~~~~------~~~~~~~~~l~~l~~~~~v~i~hV~~H~g~~gN~~AD~LA~~G 557 (557)
T 2zd1_A 511 ------QPDK------SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp ------CCSE------ESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred ------CCCC------CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf ------9976------6459999999998578987999906899996538999987379
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.95 E-value=4.5e-28 Score=176.85 Aligned_cols=128 Identities=23% Similarity=0.366 Sum_probs=99.0
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEECCCCEE---EEECCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCHHHCCCCC
Q ss_conf 899996647579998218999996188127---860222766302789999998641134--540378840645503256
Q gi|254780796|r 8 EVHAYTDGACSGNPGPGGWGVLLRYKGKEK---IISGGEKETTNNRMELMAAIKALTALK--YPCKVLLYTDSSYVHKGF 82 (152)
Q Consensus 8 ~i~IytDGS~~~n~~~aG~g~v~~~~~~~~---~~~~~~~~~Tnn~aEl~Ai~~AL~~~~--~~~~i~I~tDS~yvv~~i 82 (152)
.|.|||||||++|||++|||+|+...+... ......+.+|||+||+.|++.||+++. ...+|.|+|||+|+++.+
T Consensus 3 ~v~v~tDGa~~~n~G~aG~G~vi~~~~~~~~~~~~~~~~~~~tnn~AE~~Al~~aL~~~~~~~~~~v~i~tDS~~vi~~~ 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
T ss_conf 59999701478999987999999987998276787404687654999999999999998636886359997456358988
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 522567765432003556421100023454102221-05589801788884558999999999998873
Q gi|254780796|r 83 SQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQH-KVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150 (152)
Q Consensus 83 ~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~-~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k~ 150 (152)
+. .|+.. ......+++++..+.+++ .|+|.|||+| +|+.||.||++|+++..+
T Consensus 83 ~~--------~~~~~---~~~l~~l~~~i~~l~~~f~~v~~~~V~r~----~N~~AD~LA~~a~d~~a~ 136 (141)
T 3hst_B 83 SG--------RWKVK---HPDLLKLYVQAQALASQFRRINYEWVPRA----RNTYADRLANDAMDAAAQ 136 (141)
T ss_dssp TT--------SSCCC---SHHHHHHHHHHHHHHTTSSEEEEEECCGG----GCHHHHHHHHHHHHHHHH
T ss_pred HC--------CCCCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHHHHHHHHHHC
T ss_conf 58--------75438---97899999999999848897899992662----314899999999998700
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, double-stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii str}
Probab=99.93 E-value=1.7e-26 Score=168.05 Aligned_cols=127 Identities=25% Similarity=0.381 Sum_probs=96.2
Q ss_pred EEEEECCCCC-CCCC-CCEEEEEEECCCCEEEEEC-----CCCCCCHHHHHHHHHHHHHHCCCC--CCEEEEECCHHHCC
Q ss_conf 9999664757-9998-2189999961881278602-----227663027899999986411345--40378840645503
Q gi|254780796|r 9 VHAYTDGACS-GNPG-PGGWGVLLRYKGKEKIISG-----GEKETTNNRMELMAAIKALTALKY--PCKVLLYTDSSYVH 79 (152)
Q Consensus 9 i~IytDGS~~-~n~~-~aG~g~v~~~~~~~~~~~~-----~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~i~I~tDS~yvv 79 (152)
|++||||||+ +||+ ++|+|+++..++....... .....|||+||+.|++.||+.+.+ ..++.|+|||++|+
T Consensus 2 i~~y~DGa~~~~Npg~~ag~G~vi~~~~~~~~~~~~~~~~~~~~~TNN~AE~~Al~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
T ss_conf 99999626899998838699999998994799888751156777653799999999999999755875518993669987
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 25652256776543200355642110002345410222105589801788884558999999999998873
Q gi|254780796|r 80 KGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFKN 150 (152)
Q Consensus 80 ~~i~~~~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k~ 150 (152)
+.++. .|+..... ..+++.++.++.+.++++|.||| ++.|+.||+|||+|++..++
T Consensus 82 ~~~~g--------~~~~~~~~---l~~l~~~i~~l~~~~~~~~~~v~----r~~N~~AD~LA~~A~~~~~~ 137 (149)
T 2ehg_A 82 KQMNG--------EYKVKAKR---IIPLYEKAIELKKKLNATLIWVP----REENKEADRLSRVAYELVRR 137 (149)
T ss_dssp HHHTT--------SSCCCCTT---HHHHHHHHHHHHHHHTCEEEECC----GGGCHHHHHHHHHHHHHHHT
T ss_pred HCCCC--------CCCCCCHH---HHHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHHHHHHHHHCC
T ss_conf 25048--------74239989---99999999986005876999847----06617999999999626528
No 14
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=93.21 E-value=0.013 Score=33.68 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=38.4
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECC-C-CEEE---EE----CCCCCCCHHHHHHHHHHHHHHCCC---CCCEEEEECCHH
Q ss_conf 9999664757999821899999618-8-1278---60----222766302789999998641134---540378840645
Q gi|254780796|r 9 VHAYTDGACSGNPGPGGWGVLLRYK-G-KEKI---IS----GGEKETTNNRMELMAAIKALTALK---YPCKVLLYTDSS 76 (152)
Q Consensus 9 i~IytDGS~~~n~~~aG~g~v~~~~-~-~~~~---~~----~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~~i~I~tDS~ 76 (152)
..|+||.|.. |+|+++... + .... .+ ..+..-+.+.-||.|++.||+... .+.+++|+||.+
T Consensus 347 ~~l~tDAS~~------g~gavL~Q~~~~~~~pI~f~Sr~l~~aE~~Y~~~ekEllAi~~al~~~~~~l~g~~~~v~TDh~ 420 (455)
T 1rw3_A 347 FELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred EEEEEECCCC------CCEEEEEEECCCCEEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 7999813668------7736999975998789999988699778786499999999999999999985897489997875
Q ss_pred HC
Q ss_conf 50
Q gi|254780796|r 77 YV 78 (152)
Q Consensus 77 yv 78 (152)
..
T Consensus 421 ~l 422 (455)
T 1rw3_A 421 VE 422 (455)
T ss_dssp TT
T ss_pred HH
T ss_conf 89
No 15
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=40.23 E-value=19 Score=16.01 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=23.3
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 475799982189999961881278602227-66302789999998641
Q gi|254780796|r 15 GACSGNPGPGGWGVLLRYKGKEKIISGGEK-ETTNNRMELMAAIKALT 61 (152)
Q Consensus 15 GS~~~n~~~aG~g~v~~~~~~~~~~~~~~~-~~Tnn~aEl~Ai~~AL~ 61 (152)
|.+.+||.. |+|+..+++ ....+.-. ..++ -||..|+-.|-.
T Consensus 30 g~t~pNP~V---G~viv~~g~-ii~~g~~~~~g~~-HAE~~ai~~a~~ 72 (360)
T 2hxv_A 30 GRVNPNPPV---GAVVVKDGR-IIAEGFHPYFGGP-HAERMAIESARK 72 (360)
T ss_dssp TTSTTSCCC---EEEEEETTE-EEEEEECCSTTSC-CHHHHHHHHHHH
T ss_pred CCCCCCCCE---EEEEEECCE-EEEEEECCCCCCC-CHHHHHHHHHHH
T ss_conf 776899988---999998998-9999838999998-999999999876
No 16
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=25.98 E-value=13 Score=16.82 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=6.4
Q ss_pred EEEEEECCCCCCHHHHHHH
Q ss_conf 5589801788884558999
Q gi|254780796|r 120 VDLYWIKGHAGNQENEKVD 138 (152)
Q Consensus 120 v~~~~V~gH~g~~~N~~AD 138 (152)
|-|..-+|++......+.+
T Consensus 539 vL~l~t~g~t~~~~~~L~~ 557 (730)
T 1c4k_A 539 ILFLMTPAETPAKMNNLIT 557 (730)
T ss_dssp EEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 8999788789899999999
No 17
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=22.29 E-value=16 Score=16.42 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=8.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 558980178888455899999
Q gi|254780796|r 120 VDLYWIKGHAGNQENEKVDRI 140 (152)
Q Consensus 120 v~~~~V~gH~g~~~N~~AD~l 140 (152)
|-|.--.|.+...++.+.+.|
T Consensus 578 vl~l~s~g~t~~~~~~L~~aL 598 (755)
T 2vyc_A 578 IMFLFSMGVTRGKWGTLVNTL 598 (755)
T ss_dssp EEEECCTTCCTTTTHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 899967889989999999999
Done!