HHSEARCH alignment of GI: 254780796 and SCOP domain: d1mu2a1

Alignment
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.97  E-value=6.7e-32  Score=197.04  Aligned_cols=121  Identities=24%  Similarity=0.263  Sum_probs=94.2

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf             88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI   86 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~   86 (152)
                      ..+++||||||++|++++|+|+++..+....   .....+|||+|||.|+++||++..  ..+.|+|||+||++.++.|.
T Consensus         6 ~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~---~~~~~~tnn~AEl~Ai~~al~~~~--~~i~I~tDS~~v~~~~~~~~   80 (126)
T d1mu2a1           6 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSG--PKVNIIVDSQYVMGIVASQP   80 (126)
T ss_dssp             TCEEEEEEEEECTTTCCEEEEEEETTSCEEE---EEESSCCHHHHHHHHHHHHHHTSC--SEEEEEESCHHHHHHHHTCC
T ss_pred             CCCEEEECCCCCCCCCCEEEEEEECCCCEEE---EECCCCCCHHHHHHHHHHHHCCCC--CCEEEEECHHHHHHHHHCCC
T ss_conf             9959998489789998689999955797777---744777606899999998740378--64199963399999874187


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             67765432003556421100023454102221055898017888845589999999999
Q gi|254780796|r   87 KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA  145 (152)
Q Consensus        87 ~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa  145 (152)
                      ..             ..+..+++.+..+....+|.|.|||||+|++|||+||+||++|+
T Consensus        81 ~~-------------~~~~~~~~~~~~~~~~~~v~~~wV~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          81 TE-------------SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             SE-------------ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             CC-------------CCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             53-------------34507888877764133347999858899953299999998439


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]