Query         gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs    114 out of 2571
Neff          7.1 
Searched_HMMs 13730
Date          Wed Jun  1 06:59:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780796.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rila_ c.55.3.1 (A:) RNase H  100.0 8.4E-45       0  269.5   6.4  143    7-149     2-145 (147)
  2 d1jl1a_ c.55.3.1 (A:) RNase H  100.0 4.7E-42       0  254.1  11.6  141    7-147     1-141 (152)
  3 d1mu2a1 c.55.3.1 (A:430-555) H 100.0 6.7E-32 4.9E-36  197.0   7.8  121    7-145     6-126 (126)
  4 d1zbfa1 c.55.3.1 (A:62-193) BH 100.0 1.7E-32 1.3E-36  200.3   0.8  122   10-138     6-131 (132)
  5 d1s1ta1 c.55.3.1 (A:430-539) H  99.9 3.2E-27 2.3E-31  170.8   6.1  103    7-128     7-110 (110)
  6 d2q4oa1 c.129.1.1 (A:8-190) Hy  30.6      16  0.0011   15.1   2.8   17    1-18      1-17  (183)
  7 d2g84a1 c.97.1.2 (A:1-189) Put  23.3      21  0.0016   14.3   4.2   52   25-77     47-111 (189)
  8 d1wkqa_ c.97.1.2 (A:) Guanine   15.5      32  0.0024   13.3   4.2   47   26-74     28-81  (158)
  9 d1zofa1 c.47.1.10 (A:1-170) Th  14.5      35  0.0025   13.2   3.8   29   51-79     51-81  (170)
 10 d2hxva2 c.97.1.2 (A:1-147) Rib  12.0      41   0.003   12.7   4.7   48   26-74     26-73  (147)

No 1  
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=8.4e-45  Score=269.48  Aligned_cols=143  Identities=55%  Similarity=1.001  Sum_probs=133.4

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCC-H
Q ss_conf             889999664757999821899999618812786022276630278999999864113454037884064550325652-2
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQ-W   85 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~-~   85 (152)
                      +.|+|||||||++|||++|||+|+...+....+++....+|||+|||.|++.||++++....+.|+|||+|++++++. +
T Consensus         2 ~~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~i~tds~~~~~~~~~~~   81 (147)
T d1rila_           2 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGW   81 (147)
T ss_dssp             CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHHHHHSSH
T ss_pred             CEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCC
T ss_conf             88999973178899996089999997991069842336663788999999887644047853999605466542521323


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5677654320035564211000234541022210558980178888455899999999999887
Q gi|254780796|r   86 IKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVSFK  149 (152)
Q Consensus        86 ~~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~~k  149 (152)
                      ...|++++|.++.++||+|.|||++++.++..++|+|.|||||+|++||++||+||++||.+..
T Consensus        82 ~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~~  145 (147)
T d1rila_          82 LEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQA  145 (147)
T ss_dssp             HHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             2446544333424523005789999888764036535982577898055899999999988753


No 2  
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=4.7e-42  Score=254.06  Aligned_cols=141  Identities=55%  Similarity=1.000  Sum_probs=133.6

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf             88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI   86 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~   86 (152)
                      |.|+|||||||++||+++|||+|+..++....++.....+|||+|||+|++.||+++.....+.|+|||+|++.+++.|.
T Consensus         1 k~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~~~~~i~i~tds~~~i~~~~~~~   80 (152)
T d1jl1a_           1 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQWI   80 (152)
T ss_dssp             CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHTTH
T ss_pred             CEEEEEEECCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCHH
T ss_conf             98999974777899895899999998991788506647552789988645556665312204898613212597144043


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6776543200355642110002345410222105589801788884558999999999998
Q gi|254780796|r   87 KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAAVS  147 (152)
Q Consensus        87 ~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa~~  147 (152)
                      ..|.+++|+.+.+++++|.++|+++..+..+++|+|.|||||+|++||++||+|||+|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~  141 (152)
T d1jl1a_          81 HNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMN  141 (152)
T ss_dssp             HHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCHHCCCCEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf             6767361222046765218999999987514216899825637971079999999999858


No 3  
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.97  E-value=6.7e-32  Score=197.04  Aligned_cols=121  Identities=24%  Similarity=0.263  Sum_probs=94.2

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf             88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI   86 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~   86 (152)
                      ..+++||||||++|++++|+|+++..+....   .....+|||+|||.|+++||++..  ..+.|+|||+||++.++.|.
T Consensus         6 ~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~---~~~~~~tnn~AEl~Ai~~al~~~~--~~i~I~tDS~~v~~~~~~~~   80 (126)
T d1mu2a1           6 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKV---KKLEQTTNQQAELEAFAMALTDSG--PKVNIIVDSQYVMGIVASQP   80 (126)
T ss_dssp             TCEEEEEEEEECTTTCCEEEEEEETTSCEEE---EEESSCCHHHHHHHHHHHHHHTSC--SEEEEEESCHHHHHHHHTCC
T ss_pred             CCCEEEECCCCCCCCCCEEEEEEECCCCEEE---EECCCCCCHHHHHHHHHHHHCCCC--CCEEEEECHHHHHHHHHCCC
T ss_conf             9959998489789998689999955797777---744777606899999998740378--64199963399999874187


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             67765432003556421100023454102221055898017888845589999999999
Q gi|254780796|r   87 KKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGNQENEKVDRIARNAA  145 (152)
Q Consensus        87 ~~W~~n~wk~~~~~~v~N~dl~~~l~~l~~~~~v~~~~V~gH~g~~~N~~AD~lA~~aa  145 (152)
                      ..             ..+..+++.+..+....+|.|.|||||+|++|||+||+||++|+
T Consensus        81 ~~-------------~~~~~~~~~~~~~~~~~~v~~~wV~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          81 TE-------------SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             SE-------------ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             CC-------------CCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             53-------------34507888877764133347999858899953299999998439


No 4  
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=99.97  E-value=1.7e-32  Score=200.31  Aligned_cols=122  Identities=22%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             EEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEEECCHHHCCCCCCCHHHH
Q ss_conf             99966475799982189999961881278602227663027899999986411345-40378840645503256522567
Q gi|254780796|r   10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKY-PCKVLLYTDSSYVHKGFSQWIKK   88 (152)
Q Consensus        10 ~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-~~~i~I~tDS~yvv~~i~~~~~~   88 (152)
                      .|||||||+||||++|||+|+...+.+...+++.+.+|||+|||+|++.||+.+.. ..++.|||||+||++    |+.+
T Consensus         6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~~~~~i~I~tDS~yvi~----wv~~   81 (132)
T d1zbfa1           6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIK----WVKD   81 (132)
T ss_dssp             SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTCCCCEEESCHHHHH----HHHH
T ss_pred             EEEEEECCCCCCCHHEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH----HHHH
T ss_conf             699850479999512699999759979999768675545999999999999986337965999965399999----9972


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHH---CCCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             76543200355642110002345410---222105589801788884558999
Q gi|254780796|r   89 WQQNGWKTSDKKTVKNIDLWMKFVEA---SAQHKVDLYWIKGHAGNQENEKVD  138 (152)
Q Consensus        89 W~~n~wk~~~~~~v~N~dl~~~l~~l---~~~~~v~~~~V~gH~g~~~N~~AD  138 (152)
                      |+   |+|+.+++++|++||+.+.++   ++.+.+.|.||++|+..-||..||
T Consensus        82 ~~---~kt~~~~~vkN~~l~~~i~~a~~~lk~h~~~~~~~KW~~~~wG~i~AD  131 (132)
T d1zbfa1          82 KK---AKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD  131 (132)
T ss_dssp             TC---CCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred             CC---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             76---621767886568999999999999985876761587437002567789


No 5  
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.93  E-value=3.2e-27  Score=170.76  Aligned_cols=103  Identities=26%  Similarity=0.306  Sum_probs=80.8

Q ss_pred             CEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCHH
Q ss_conf             88999966475799982189999961881278602227663027899999986411345403788406455032565225
Q gi|254780796|r    7 REVHAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTDSSYVHKGFSQWI   86 (152)
Q Consensus         7 ~~i~IytDGS~~~n~~~aG~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tDS~yvv~~i~~~~   86 (152)
                      ..+++||||||++||+++|+|+++..+.. ...  ....+|||+|||.|++.||+..  ..++.|||||+||+++++.|.
T Consensus         7 ~~~t~ytDGs~~~n~~~g~~g~~~~~~~~-~~~--~~~~~TNn~aEl~Avi~aL~~~--~~~v~I~TDS~yvi~~i~~~~   81 (110)
T d1s1ta1           7 GAETFYVDGAANRETKLGKAGYVTNRGRQ-KVV--TLTDTTNQKTELQAIYLALQDS--GLEVNIVTDSQYALGIIQAQP   81 (110)
T ss_dssp             TSEEEEEEEEEETTTTEEEEEEEETTSCE-EEE--EESSCCHHHHHHHHHHHHHHHS--CSEEEEEECCHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCCCCEEEEEEECCCE-EEE--ECCCCCHHHHHHHHHHHHHHHC--CCEEEEEEEHHHHHHHHHCCC
T ss_conf             99589984888899987579999834976-887--5266868999999999999849--990999971099999986371


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHH-HCCCCCEEEEEECCC
Q ss_conf             677654320035564211000234541-022210558980178
Q gi|254780796|r   87 KKWQQNGWKTSDKKTVKNIDLWMKFVE-ASAQHKVDLYWIKGH  128 (152)
Q Consensus        87 ~~W~~n~wk~~~~~~v~N~dl~~~l~~-l~~~~~v~~~~V~gH  128 (152)
                      ..|.+              ++|+++.+ +..+..|.|.|||||
T Consensus        82 ~~~~~--------------~l~~~il~~l~~~~~v~i~WVpgH  110 (110)
T d1s1ta1          82 DQSES--------------ELVNQIIEQLIKKEKVYLAWVPAH  110 (110)
T ss_dssp             SEESC--------------HHHHHHHHHHHHCSEEEEEECCSS
T ss_pred             CCCCH--------------HHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             31435--------------789999999866791699980899


No 6  
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.64  E-value=16  Score=15.11  Aligned_cols=17  Identities=18%  Similarity=0.542  Sum_probs=13.5

Q ss_pred             CCCCCCCEEEEEECCCCC
Q ss_conf             977778889999664757
Q gi|254780796|r    1 MDSKHLREVHAYTDGACS   18 (152)
Q Consensus         1 ~~~~~~~~i~IytDGS~~   18 (152)
                      |.++.||.|.||+ ||..
T Consensus         1 ~~~~~~k~v~Vf~-gs~~   17 (183)
T d2q4oa1           1 MQKSKFRRICVFC-GSSQ   17 (183)
T ss_dssp             CCCCSCSEEEEEC-CSSC
T ss_pred             CCCCCCCEEEEEC-CCCC
T ss_conf             9736776189987-5799


No 7  
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}
Probab=23.27  E-value=21  Score=14.33  Aligned_cols=52  Identities=15%  Similarity=0.071  Sum_probs=28.4

Q ss_pred             EEEEEEECCC-CEEEEECC-----CCCCCHHHHHHHHHHHHHHCCCC-------CCEEEEECCHHH
Q ss_conf             8999996188-12786022-----27663027899999986411345-------403788406455
Q gi|254780796|r   25 GWGVLLRYKG-KEKIISGG-----EKETTNNRMELMAAIKALTALKY-------PCKVLLYTDSSY   77 (152)
Q Consensus        25 G~g~v~~~~~-~~~~~~~~-----~~~~Tnn~aEl~Ai~~AL~~~~~-------~~~i~I~tDS~y   77 (152)
                      .+|+|++..+ .+.+..+.     ..+.|.+ ||+.|+-.|.+.+..       ....++||-.+-
T Consensus        47 P~GaviV~~~~g~Iia~g~N~~~~~~dpt~H-AEi~AI~~A~~~~~~~~l~~~~l~~~tlY~TlEP  111 (189)
T d2g84a1          47 PFAAAVFERDSGLLIAAGTNRVVPGRCSAAH-AEILALSLAQAKLDTHDLSADGLPACELVTSAEP  111 (189)
T ss_dssp             SCEEEEEETTTCBEEEEEECCTTTTTCTTCC-HHHHHHHHHHHHHTCSCTTCTTSCCEEEEEEECC
T ss_pred             CEEEEEEECCCCEEEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf             8899999789998999870876768998634-9999999999986301112212368578820577


No 8  
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]}
Probab=15.46  E-value=32  Score=13.32  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             EEEEEECCCCEEEEECC-----CCCCCHHHHHHHHHHHHHHCCCCC--CEEEEECC
Q ss_conf             99999618812786022-----276630278999999864113454--03788406
Q gi|254780796|r   26 WGVLLRYKGKEKIISGG-----EKETTNNRMELMAAIKALTALKYP--CKVLLYTD   74 (152)
Q Consensus        26 ~g~v~~~~~~~~~~~~~-----~~~~Tnn~aEl~Ai~~AL~~~~~~--~~i~I~tD   74 (152)
                      +|+|+..++.. +..+.     ..+.|.+ ||+.|+..|...+...  ...++|+-
T Consensus        28 vGaviv~~~~i-i~~g~n~~~~~~~~t~H-AE~~ai~~a~~~~~~~~l~~~tlyvT   81 (158)
T d1wkqa_          28 FGAVIVKDGAI-IAEGQNNVTTSNDPTAH-AEVTAIRKACKVLGAYQLDDCILYTS   81 (158)
T ss_dssp             CEEEEEETTEE-EEEEECCHHHHTCTTCC-HHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred             EEEEEEECCCC-EEECCCEEECCCCCCCC-HHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             89999956610-14303302046777621-78999999987427641479789997


No 9  
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}
Probab=14.50  E-value=35  Score=13.17  Aligned_cols=29  Identities=24%  Similarity=0.190  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHCCCC-C-CEEEEECCHHHCC
Q ss_conf             899999986411345-4-0378840645503
Q gi|254780796|r   51 MELMAAIKALTALKY-P-CKVLLYTDSSYVH   79 (152)
Q Consensus        51 aEl~Ai~~AL~~~~~-~-~~i~I~tDS~yvv   79 (152)
                      .|+.++-..++.+.. + .-+.|-+||...-
T Consensus        51 ~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~   81 (170)
T d1zofa1          51 TEIIAFDKRVKDFHEKGFNVIGVSIDSEQVH   81 (170)
T ss_dssp             THHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
T ss_conf             9999998767764158826843544205667


No 10 
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=11.98  E-value=41  Score=12.74  Aligned_cols=48  Identities=19%  Similarity=0.033  Sum_probs=25.1

Q ss_pred             EEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             9999961881278602227663027899999986411345403788406
Q gi|254780796|r   26 WGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLLYTD   74 (152)
Q Consensus        26 ~g~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~~~i~I~tD   74 (152)
                      .|+|+..++. .+..+........-||..|+..|..........++|+-
T Consensus        26 VGaViV~~g~-IIa~g~n~~~~~~hae~~ai~~a~~~~~~l~~~~lYvT   73 (147)
T d2hxva2          26 VGAVVVKDGR-IIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVT   73 (147)
T ss_dssp             CEEEEEETTE-EEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEE
T ss_pred             EEEEEEECCE-EEEEECEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             8999998994-77761100368834899989999981788779888520


Done!