PSIBLAST alignment of GI: 254780796 and protein with PDB id: 1n5y
>gi|28373910|pdb|1N5Y|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Post- Translocation Aztmp-Terminated Dna (Complex P) Length = 558
>gi|28373921|pdb|1N6Q|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Pre- Translocation Aztmp-Terminated Dna (Complex N) Length = 558
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 18/136 (13%)
Query: 12 YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
Y DGA + G G + ++ + + A++ +V +
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ-----DSGLEVNI 495
Query: 72 YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
TDS Y G + ++ + + + KV L W+ H G
Sbjct: 496 VTDSQYA-------------LGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGI 542
Query: 132 QENEKVDRIARNAAVS 147
NE+VD++
Sbjct: 543 GGNEQVDKLVSAGIRK 558