RPSBLAST alignment for GI: 254780796 and conserved domain: cd06222
>gnl|CDD|119393 cd06222, RnaseH, RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.. Length = 130
Score = 132 bits (333), Expect = 6e-32
Identities = 60/141 (42%), Positives = 79/141 (56%), Gaps = 16/141 (11%)
Query: 10 HAYTDGACSGNPGPGGWGVLLRYKGKEKIISGGE--KETTNNRMELMAAIKALTALKY-- 65
YTDG+C GNPGP G GV+LR G E ++SGG TTNNR EL+A I+AL
Sbjct: 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELG 60
Query: 66 PCKVLLYTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQ-HKVDLYW 124
KV +YTDS YV + W + K VKN+DLW + + + HKV W
Sbjct: 61 GKKVNIYTDSQYVINALTGWYE-----------GKPVKNVDLWQRLLALLKRFHKVRFEW 109
Query: 125 IKGHAGNQENEKVDRIARNAA 145
+ GH+G + NE+ D +A+ AA
Sbjct: 110 VPGHSGIEGNERADALAKEAA 130