RPSBLAST alignment of GI: 254780796 and SCOP domain: d1mu2a1

Alignment

 Score = 90.0 bits (222), Expect = 8e-20
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 12  YTDGACSGNPGPGGWGVLLRYKGKEKIISGGEKETTNNRMELMAAIKALTALKYPCKVLL 71
           YTDG+C+     G  G       + K      ++TTN + EL A            KV +
Sbjct: 11  YTDGSCNRQSKEGKAGY---VTDRGKDKVKKLEQTTNQQAELEAFAM--ALTDSGPKVNI 65

Query: 72  YTDSSYVHKGFSQWIKKWQQNGWKTSDKKTVKNIDLWMKFVEASAQHKVDLYWIKGHAGN 131
             DS YV    +    + +                      E   +  + + W+  H G 
Sbjct: 66  IVDSQYVMGIVASQPTESESKIV-------------NQIIEEMIKKEAIYVAWVPAHKGI 112

Query: 132 QENEKVDRIARNA 144
             N++VD +    
Sbjct: 113 GGNQEVDHLVSQG 125

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]