HHsearch alignment for GI: 254780797 and conserved domain: TIGR00633
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=99.90 E-value=1.4e-22 Score=138.74 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=105.6
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHHHCCCCEEEEECCC--CHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 8998873100767775566676666879999999--999975189899997279--988999872623221677403578
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALL--QKYAEQLDADIVCLQEIG--SYEAIKRVFPNDKWDILYSGSNTD 82 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~i~~~~~DVi~LQEv~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
T Consensus 1 mKiiSWNVNGlR----------------A~~~~~sfL~~l~~~~pDvLCLQETK~~~~~~p~~~~~~~GY~~~~~~~~~k 64 (279)
T TIGR00633 1 MKIISWNVNGLR----------------ARLKKLSFLDWLKEENPDVLCLQETKVADEQFPKELLEELGYHVFFHGAKKK 64 (279)
T ss_pred CCEEEEECCHHH----------------HHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf 916887112344----------------2135112888986538978762200278776634666407981588414665
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCC-CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHH-HHHHH
Q ss_conf 7650356886146410100001221-467565544575049999984997899999751168888754300254-57887
Q gi|254780797|r 83 KHAMHTAIVIRKGAIHLLQKSYLPM-DTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYIS-SCYML 160 (231)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~-~~~~~ 160 (231)
T Consensus 65 k-~Gy~GVA~~Sk~~P~~V~~G~g~~~~~----D~egR~~i~~~i~a~f~~f~v~n~YvPNg~~~~------~~~rl~Yk 133 (279)
T TIGR00633 65 K-KGYSGVAILSKVEPLSVRYGFGVLEEH----DEEGRVIIMRVITAEFDGFYVVNVYVPNGGARG------LETRLEYK 133 (279)
T ss_pred C-CCEEEEEEEECCCCCEEEECCCCCCCC----CCCCCEEEEEEEEEECCCEEEEEEEECCCCCCC------CCCCHHHH
T ss_conf 8-851368998601632022068788721----037746533310101054799987766861136------54462788
Q ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEECCCC
Q ss_conf 54899999999974048--8789999136888
Q gi|254780797|r 161 NLQATWLKQWVDQKNNL--NMPFIIAGDFNRK 190 (231)
Q Consensus 161 ~~q~~~l~~~i~~~~~~--~~~vii~GDFN~~ 190 (231)
T Consensus 134 ~~~w~~~~~~~~~~l~~~~~~pv~~cGD~NvA 165 (279)
T TIGR00633 134 LDFWEALLQYYLKELDASDGKPVIICGDLNVA 165 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 89999999999999861799979998477889