HHsearch alignment of GI: 254780797 and MMDB domain: 1ako_A_
>1ako_A (A:) Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli}
Probab=99.81 E-value=6.9e-19 Score=118.77 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=101.4
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEEECCCCCC
Q ss_conf 89988731007677755666766668799999999999751898999972799889--9987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+++. .+.+.++++|.+.+||||||||+...+. +........+..... ....
T Consensus 1 lrv~s~Ni~~~~----------------~r~~~~~~~i~~~~pDVi~lQE~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 61 (268)
T 1ako_A 1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH---GQKG 61 (268)
T ss_dssp CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEE---EETT
T ss_pred CEEEEEEECCHH----------------HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEC---CCCC
T ss_conf 989999808899----------------869989999986799999999520581339987886569536531---4444
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
....+++++........... ..............+...+..+.++++|+++...... ......+..+.
T Consensus 62 ~~g~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 129 (268)
T 1ako_A 62 HYGVALLTKETPIAVRRGFP-------GDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDH-----PIKFPAKAQFY 129 (268)
T ss_dssp EEEEEEEESSCCSEEEESST-------TCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTC-----TTHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCC-----HHHHHHHHHHH
T ss_conf 32220000124500013641-------0112354321000110134762467643205776331-----02335678899
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 999999997404887899991368884622
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231)
..+.+.+........|+|++||||..+...
T Consensus 130 ~~~~~~~~~~~~~~~~~i~~gD~N~~~~~~ 159 (268)
T 1ako_A 130 QNLQNYLETELKRDNPVLIMGDMNISPTDL 159 (268)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCCSGG
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 999999998774278667642002475065