HHsearch alignment of GI: 254780797 and MMDB domain: 1wdu_A_

>1wdu_A (A:) TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori}
Probab=99.45  E-value=1.9e-11  Score=79.10  Aligned_cols=146  Identities=16%  Similarity=0.056  Sum_probs=83.6

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK   83 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (231)
                      +.+|||+||||+++                ..+.+.|++.|++.+||||||||+...........  ...+.+.......
T Consensus        17 ~~~lrv~t~Ni~~~----------------~~~~~~l~~~i~~~~pDIv~lQE~~~~~~~~~~~~--~~~~~~~~~~~~~   78 (245)
T 1wdu_A           17 GPPYRVLQANLQRK----------------KLATAELAIEAATRKAAIALIQEPYVGGAKSMKGF--RGVRVFQSTAQGD   78 (245)
T ss_dssp             -CCEEEEEEECTTC----------------HHHHHHHHHHHHHHTCSEEEEESCCC------CCC--SSCEEEECCCCTT
T ss_pred             CCCEEEEEECCCCC----------------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHC--CCCEEEEEECCCC
T ss_conf             99879998847987----------------66899999999861998999987887776520002--5611367645689


Q ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r   84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ  163 (231)
Q Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q  163 (231)
                      .+...++++..............           ......+.....+..+.++++|.+.....             +...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  134 (245)
T 1wdu_A           79 GTVKAAIAVFDHDLDVIQYPQLT-----------TNNIVVVGIRTRAWEITLVSYYFEPDKPI-------------ESYL  134 (245)
T ss_dssp             CCCCEEEEECCSSCEEEECTTTC-----------CSSEEEEEEECSSCEEEEEEEECCTTSCS-------------HHHH
T ss_pred             CCCEEEEEEECCCCCEEEECCCC-----------CCCEEEEEEEECCCCEEEEEEECCCCCCH-------------HHHH
T ss_conf             98679999971564135514888-----------79859999990892089999960874431-------------8999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             9999999997404887899991368884622
Q gi|254780797|r  164 ATWLKQWVDQKNNLNMPFIIAGDFNRKINHS  194 (231)
Q Consensus       164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~  194 (231)
                      .. .....  ......+.+++||||......
T Consensus       135 ~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~  162 (245)
T 1wdu_A          135 EQ-IKRVE--RKMGPKRLIFGGDANAKSTWW  162 (245)
T ss_dssp             HH-HHHHH--HTTCSSSEEEEEECCCCCGGG
T ss_pred             HH-HHHHH--HHCCCCEEEECCCCCCCCHHH
T ss_conf             99-99998--752797399805467477111