HHsearch alignment of GI: 254780797 and MMDB domain: 2jc5_A_

>2jc5_A (A:) Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.55  E-value=1.8e-13  Score=89.95  Aligned_cols=152  Identities=14%  Similarity=0.061  Sum_probs=81.2

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH--HHHCCCCCEEEEEECCCCC
Q ss_conf             48998873100767775566676666879999999999975189899997279988999--8726232216774035787
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK--RVFPNDKWDILYSGSNTDK   83 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~--~~~~~~~~~~~~~~~~~~~   83 (231)
                      +|||+||||+++               ...+.+.+++.|++.+|||||||||.......  ..+.. .+.++........
T Consensus         1 tlrv~t~Ni~~~---------------~~~~~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~-~~~~~~~~~~~~~   64 (259)
T 2jc5_A            1 MLKIISANVNGI---------------RSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNP-HGMHGHWHCAEKR   64 (259)
T ss_dssp             CEEEEEEECSSH---------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSG-GGCEEEEECCSST
T ss_pred             CEEEEEEECCCH---------------HHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHHCC-CCCCCEEECCCCC
T ss_conf             929999974378---------------887661299999747999999983326810079878512-0122102100256


Q ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r   84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ  163 (231)
Q Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q  163 (231)
                      .....+++++.+............       .......  +.....+  +.+.+.+......       .......+..+
T Consensus        65 ~~~g~~i~sr~p~~~~~~~~~~~~-------~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~  126 (259)
T 2jc5_A           65 GYSGVAVYSKRKPDNVQIGMGIEE-------FDREGRF--VRCDFGR--LSVISLYLPSGSS-------AEERQQVKYRF  126 (259)
T ss_dssp             TCCCEEEEESSCCSEEEESCSCHH-------HHTTCCE--EEEEETT--EEEEEEECCCCTT-------CHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCEEEEECCCCCC-------CCCCCEE--EEEEECC--EEEEEEEEEECCC-------CCCCHHHHHHH
T ss_conf             741321023678577873378764-------3200002--0068798--9998663100331-------11213566655


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             9999999997404887899991368884
Q gi|254780797|r  164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      ...+..........+.+.+++||||...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (259)
T 2jc5_A          127 LDAFYPMLEAMKNEGRDIVVCGDWNIAH  154 (259)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEEECCCCC
T ss_pred             HHHHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf             4432110211233444311100001242