HHsearch alignment of GI: 254780797 and MMDB domain: 2jc5_A_
>2jc5_A (A:) Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.55 E-value=1.8e-13 Score=89.95 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=81.2
Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH--HHHCCCCCEEEEEECCCCC
Q ss_conf 48998873100767775566676666879999999999975189899997279988999--8726232216774035787
Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK--RVFPNDKWDILYSGSNTDK 83 (231)
Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~--~~~~~~~~~~~~~~~~~~~ 83 (231)
+|||+||||+++ ...+.+.+++.|++.+|||||||||....... ..+.. .+.++........
T Consensus 1 tlrv~t~Ni~~~---------------~~~~~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 64 (259)
T 2jc5_A 1 MLKIISANVNGI---------------RSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNP-HGMHGHWHCAEKR 64 (259)
T ss_dssp CEEEEEEECSSH---------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSG-GGCEEEEECCSST
T ss_pred CEEEEEEECCCH---------------HHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHHCC-CCCCCEEECCCCC
T ss_conf 929999974378---------------887661299999747999999983326810079878512-0122102100256
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231)
.....+++++.+............ ....... +.....+ +.+.+.+...... .......+..+
T Consensus 65 ~~~g~~i~sr~p~~~~~~~~~~~~-------~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~ 126 (259)
T 2jc5_A 65 GYSGVAVYSKRKPDNVQIGMGIEE-------FDREGRF--VRCDFGR--LSVISLYLPSGSS-------AEERQQVKYRF 126 (259)
T ss_dssp TCCCEEEEESSCCSEEEESCSCHH-------HHTTCCE--EEEEETT--EEEEEEECCCCTT-------CHHHHHHHHHH
T ss_pred CCEEEECCCCCCCEEEEECCCCCC-------CCCCCEE--EEEEECC--EEEEEEEEEECCC-------CCCCHHHHHHH
T ss_conf 741321023678577873378764-------3200002--0068798--9998663100331-------11213566655
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 9999999997404887899991368884
Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231)
Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231)
...+..........+.+.+++||||...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259)
T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNIAH 154 (259)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCCCC
T ss_pred HHHHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf 4432110211233444311100001242