Query gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 231 No_of_seqs 122 out of 2316 Neff 10.3 Searched_HMMs 33803 Date Wed Jun 1 13:38:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780797.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ddr_A Sphingomyelin phosphod 99.9 3.3E-23 9.9E-28 141.7 18.6 179 4-196 7-205 (306) 2 >1zwx_A SMCL, sphingomyelinase 99.9 8.3E-23 2.5E-27 139.6 17.9 179 4-193 8-202 (301) 3 >1ako_A Exonuclease III; AP-en 99.8 6.9E-19 2E-23 118.8 14.0 157 7-194 1-159 (268) 4 >3g6s_A Putative endonuclease/ 99.7 1.6E-16 4.8E-21 106.1 16.5 169 5-194 2-180 (267) 5 >2imq_X Salivary nitrophorin; 99.7 3.4E-18 9.9E-23 115.1 5.2 162 6-194 8-179 (282) 6 >2jc4_A Exodeoxyribonuclease I 99.7 1.5E-16 4.4E-21 106.3 12.4 153 7-193 1-153 (256) 7 >3l1w_A Uncharacterized protei 99.7 7.3E-16 2.2E-20 102.7 14.9 167 7-194 1-174 (257) 8 >1hd7_A DNA-(apurinic or apyri 99.7 2.2E-16 6.5E-21 105.5 12.0 156 3-193 58-217 (318) 9 >2o3h_A DNA-(apurinic or apyri 99.7 1.1E-15 3.3E-20 101.7 12.2 156 3-193 25-184 (285) 10 >2voa_A AF_EXO, XTHA, exodeoxy 99.6 5.4E-15 1.6E-19 98.0 13.7 150 6-192 1-152 (257) 11 >1i9z_A Synaptojanin, phosphat 99.6 6.1E-15 1.8E-19 97.8 10.0 163 6-192 9-196 (304) 12 >2ei9_A Non-LTR retrotransposo 99.6 6.8E-14 2E-18 92.2 13.0 132 1-192 2-133 (240) 13 >2jc5_A Exodeoxyribonuclease; 99.6 1.8E-13 5.3E-18 89.9 13.7 152 6-191 1-154 (259) 14 >1vyb_A ORF2 contains A revers 99.5 2.5E-12 7.3E-17 83.9 17.6 147 3-191 4-150 (238) 15 >1wdu_A TRAS1 ORF2P; four-laye 99.4 1.9E-11 5.7E-16 79.1 17.4 146 4-194 17-162 (245) 16 >2j63_A AP-endonuclease; base 99.3 1.5E-11 4.4E-16 79.7 8.3 95 4-110 13-111 (126) 17 >2a40_B Deoxyribonuclease-1; W 98.9 5.9E-09 1.8E-13 65.9 6.8 78 7-95 1-87 (120) 18 >2f1n_A CDT B, cytolethal dist 98.8 7.1E-08 2.1E-12 60.1 9.4 152 5-193 14-192 (262) 19 >2a40_B Deoxyribonuclease-1; W 98.2 2E-05 6E-10 47.0 9.7 65 113-193 18-88 (140) 20 >2j63_A AP-endonuclease; base 98.0 9.6E-05 2.8E-09 43.4 10.0 60 131-190 190-261 (341) 21 >1sr4_B CDT B, cytolethal dist 95.4 0.02 5.8E-07 31.2 4.2 43 5-59 3-47 (138) 22 >1sr4_B CDT B, cytolethal dist 94.0 0.11 3.4E-06 27.1 5.2 62 116-193 14-79 (123) 23 >1mu2_A HIV-2 RT; HIV-2 revers 45.5 13 0.00039 16.1 2.1 10 135-145 145-154 (224) 24 >3hkx_A Amidase; alpha-beta-BE 43.4 19 0.00056 15.3 8.5 46 1-58 15-63 (283) 25 >2nxf_A Putative dimetal phosp 38.3 23 0.00067 14.8 2.7 24 32-55 35-58 (150) 26 >3fsi_A RT, reverse transcript 36.3 24 0.00071 14.7 2.3 18 29-46 40-57 (255) 27 >1z0n_A 5'-AMP-activated prote 34.7 20 0.0006 15.1 1.7 15 177-191 20-34 (96) 28 >3d03_A Phosphohydrolase; glyc 33.3 28 0.00082 14.4 3.8 26 30-55 21-48 (149) 29 >1uf5_A N-carbamyl-D-amino aci 30.7 31 0.00091 14.1 4.8 45 4-58 1-48 (303) 30 >3ke8_A 4-hydroxy-3-methylbut- 27.5 35 0.001 13.8 2.4 24 167-190 6-29 (95) 31 >2e11_A Hydrolase; dimethylars 24.0 41 0.0012 13.5 10.1 29 30-58 15-45 (266) 32 >3dnf_A ISPH, LYTB, 4-hydroxy- 20.9 48 0.0014 13.1 2.4 23 168-190 7-29 (97) 33 >3kp1_A D-ornithine aminomutas 20.6 49 0.0014 13.1 3.5 21 37-57 62-82 (179) No 1 >>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} (A:) Probab=99.92 E-value=3.3e-23 Score=141.75 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=107.1 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHC---CCCCEEEEEECC Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726---232216774035 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFP---NDKWDILYSGSN 80 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~---~~~~~~~~~~~~ 80 (231) ..+|||+||||+++.... ......+.+++.+++.|...+|||||||||........... ...+... .... T Consensus 7 ~~~lrV~T~Nv~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (306) T 2ddr_A 7 NDTLKVMTHNVYMLSTNL------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQT-AVLG 79 (306) T ss_dssp CCEEEEEEEEEEECCTTT------CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEEC-CCTT T ss_pred CCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE-EEEE T ss_conf 998799998678565677------887068899999999997679998999837776417999999887577403-4310 Q ss_pred CCCCCC----------------EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCC Q ss_conf 787650----------------3568861464101000012214675655445750499999849978999997511688 Q gi|254780797|r 81 TDKHAM----------------HTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFC 144 (231) Q Consensus 81 ~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~ 144 (231) ...... ...++++........ ..............+..+.+.+..++..+.|+|+||+++. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~ 156 (306) T 2ddr_A 80 RSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQ---YVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAED 156 (306) T ss_dssp SCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEE---EECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC- T ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCE---EEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCC T ss_conf 3567765314421334411264379998752333300---2310235654223106999998069918999993243355 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCCCC Q ss_conf 887543002545788754899999999-9740488789999136888462222 Q gi|254780797|r 145 FLDSIEDSYISSCYMLNLQATWLKQWV-DQKNNLNMPFIIAGDFNRKINHSHS 196 (231) Q Consensus 145 ~~~~~~~~~~~~~~~~~~q~~~l~~~i-~~~~~~~~~vii~GDFN~~~~~~~~ 196 (231) ........ ...+..+..++.+.+ ......+.++|+|||||..+..... T Consensus 157 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~ 205 (306) T 2ddr_A 157 SMCGKTSP----ASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAEN 205 (306) T ss_dssp ------CH----HHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSS T ss_pred CCCCCCHH----HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH T ss_conf 55221013----78998888877666654212566618998347889762554 No 2 >>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:) Probab=99.91 E-value=8.3e-23 Score=139.64 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=108.5 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH--HCCCCCEEEEEECCC Q ss_conf 654899887310076777556667666687999999999997518989999727998899987--262322167740357 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV--FPNDKWDILYSGSNT 81 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~--~~~~~~~~~~~~~~~ 81 (231) ..+|||+||||+++.... ......+.+++.|++.|...+|||||||||......... .....+.+....... T Consensus 8 ~~~lrv~T~Nv~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (301) T 1zwx_A 8 PGNFKITSHNVYLFSRNI------YPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGR 81 (301) T ss_dssp CCSCEEEEEEEEECCTTT------STTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS T ss_pred CCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC T ss_conf 998799998388676566------89816899999999998756998899985877005899999876532613310113 Q ss_pred CCCCCE-------------EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCC Q ss_conf 876503-------------5688614641010000122146756554457504999998499789999975116888875 Q gi|254780797|r 82 DKHAMH-------------TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDS 148 (231) Q Consensus 82 ~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~ 148 (231) ...... .+.++..... ....................+..+.+.+...+..+.++|+||+++..... T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Hl~~~~~~~~ 160 (301) T 1zwx_A 82 SKHGWDKTEGNYSNFALEDGGVAVVSQWP-IVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLIS 160 (301) T ss_dssp CSTTCSEEEC-----CCBCCCCEEEESSC-EEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSC T ss_pred CCCCCCCCCCCCCCCEECCCEEEEEEECC-CHHHEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCC T ss_conf 54433421134555303066079998416-20110341254555323357417999980699289999831455544543 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCC Q ss_conf 43002545788754899999999-9740488789999136888462 Q gi|254780797|r 149 IEDSYISSCYMLNLQATWLKQWV-DQKNNLNMPFIIAGDFNRKINH 193 (231) Q Consensus 149 ~~~~~~~~~~~~~~q~~~l~~~i-~~~~~~~~~vii~GDFN~~~~~ 193 (231) . ......+..+...+.... ......+.|+|||||||..+.+ T Consensus 161 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~GDfN~~~~~ 202 (301) T 1zwx_A 161 K----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301) T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS T ss_pred H----HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC T ss_conf 0----46789999999986422210135777459999777988873 No 3 >>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} (A:) Probab=99.81 E-value=6.9e-19 Score=118.77 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=101.4 Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEEECCCCCC Q ss_conf 89988731007677755666766668799999999999751898999972799889--9987262322167740357876 Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYSGSNTDKH 84 (231) Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (231) |||+||||+++. .+.+.++++|.+.+||||||||+...+. +........+..... .... T Consensus 1 lrv~s~Ni~~~~----------------~r~~~~~~~i~~~~pDVi~lQE~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 61 (268) T 1ako_A 1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH---GQKG 61 (268) T ss_dssp CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEE---EETT T ss_pred CEEEEEEECCHH----------------HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEC---CCCC T ss_conf 989999808899----------------869989999986799999999520581339987886569536531---4444 Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489 Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231) Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231) ....+++++........... ..............+...+..+.++++|+++...... ......+..+. T Consensus 62 ~~g~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 129 (268) T 1ako_A 62 HYGVALLTKETPIAVRRGFP-------GDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDH-----PIKFPAKAQFY 129 (268) T ss_dssp EEEEEEEESSCCSEEEESST-------TCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTC-----TTHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCC-----HHHHHHHHHHH T ss_conf 32220000124500013641-------0112354321000110134762467643205776331-----02335678899 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCC Q ss_conf 999999997404887899991368884622 Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231) Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231) ..+.+.+........|+|++||||..+... T Consensus 130 ~~~~~~~~~~~~~~~~~i~~gD~N~~~~~~ 159 (268) T 1ako_A 130 QNLQNYLETELKRDNPVLIMGDMNISPTDL 159 (268) T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCCSGG T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHH T ss_conf 999999998774278667642002475065 No 4 >>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} (A:) Probab=99.75 E-value=1.6e-16 Score=106.15 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=91.1 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH--HCCCCCEEEEEECCCC Q ss_conf 54899887310076777556667666687999999999997518989999727998899987--2623221677403578 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV--FPNDKWDILYSGSNTD 82 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~--~~~~~~~~~~~~~~~~ 82 (231) .+|||+||||+++..... ......+++.|+++|++.+|||||||||......... +....|.+... .... T Consensus 2 ~~lki~t~Nv~~~~~~~~-------~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~-~~~~ 73 (267) T 3g6s_A 2 TDVRWATFNIRYDNPQDS-------LNNWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDLRAGLPEYDGIGVGR-DDGK 73 (267) T ss_dssp EEEEEEEEECCCCCGGGG-------GGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCTTEEEECCCT-TTSS T ss_pred CCEEEEEEECCCCCCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEECC-CCCC T ss_conf 845999997683888855-------35899999999999986599899998377789999998612485266545-4787 Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCCCC----C--CCCCCCCCEEEEEEEE--ECCEEEEEEEEEECCCCCCCCCCCHHH Q ss_conf 7650356886146410100001221467----5--6554457504999998--499789999975116888875430025 Q gi|254780797|r 83 KHAMHTAIVIRKGAIHLLQKSYLPMDTE----G--LDSKAGKRRAVEILFE--VDGRKIWLLDIHLKSFCFLDSIEDSYI 154 (231) Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~r~~~~~~~~--~~g~~~~v~n~HL~s~~~~~~~~~~~~ 154 (231) ......+++++................. . .......+..+..... .......+.++|+.... T Consensus 74 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 143 (267) T 3g6s_A 74 TAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXGWDAVCVRIATWAKFKDKATGKIFXAVNTHFDHVG---------- 143 (267) T ss_dssp SSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC---------- T ss_pred CCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCC---------- T ss_conf 7762479999357412674103742688653443345766433799999872699968999962266557---------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC Q ss_conf 4578875489999999997404887899991368884622 Q gi|254780797|r 155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231) Q Consensus 155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231) ...+..+........ .....+.|++++||||...... T Consensus 144 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~gd~n~~~~~~ 180 (267) T 3g6s_A 144 --EEARRQSALLIIRKI-KEIVGERPAVVTGDFNVTDASD 180 (267) T ss_dssp --HHHHHHHHHHHHHHH-HHHTTTSCEEEEEECSSCTTSH T ss_pred --HHHHHHHHHHHHHHH-HHHCCCCCEEEECCCCCCCCCH T ss_conf --899999999999999-8624689969847778898748 No 5 >>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} (X:) Probab=99.73 E-value=3.4e-18 Score=115.11 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=90.3 Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--EECCCCH-------HHHHHH-HCCCCCEEE Q ss_conf 489988731007677755666766668799999999999751898999--9727998-------899987-262322167 Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVC--LQEIGSY-------EAIKRV-FPNDKWDIL 75 (231) Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~--LQEv~~~-------~~~~~~-~~~~~~~~~ 75 (231) +|+|+||||+....+.. +..+...+...+|||+| +||+... ...... ........+ T Consensus 8 ~i~i~TwNv~g~~~~~~--------------l~~~~~~~~~~~~Di~~i~lqev~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (282) T 2imq_X 8 SVHTVSWNSGHERAPTN--------------LEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGY 73 (282) T ss_dssp EEEEEEEEEETCCCCSC--------------CHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTE T ss_pred EEEEEEECCCCCCCCCC--------------HHHHHCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 79999788899708708--------------8988574667897989997373585635453459999999997466764 Q ss_pred EEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHH Q ss_conf 74035787650356886146410100001221467565544575049999984997899999751168888754300254 Q gi|254780797|r 76 YSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYIS 155 (231) Q Consensus 76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~ 155 (231) .........+....++++........ ...............++++.+++..+|..++++|+||+++...... T Consensus 74 ~~~~~~~~~g~~~~i~~k~~~~~~~~--~v~~~~~~~~~~~~~kg~v~~~~~~~~~~i~~in~Hl~a~~~~~~~------ 145 (282) T 2imq_X 74 TKLKNTITETMGLTVYCLEKHLDQNT--LKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTN------ 145 (282) T ss_dssp EEEEEEECSSEEEEEEEEGGGCCTTT--CCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTS------ T ss_pred EEEEEEECCCCEEEEEECCCCCCCEE--EEEEEEEEEEEEECCCCCEEEEEEECCEEEEEECCCCCHHHHHHHH------ T ss_conf 27889971276789996431025426--7567678986677189977788876667776440332224678888------ Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC Q ss_conf 578875489999999997404887899991368884622 Q gi|254780797|r 156 SCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231) Q Consensus 156 ~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231) |..|+..+.+.+. ......++|++||||.++... T Consensus 146 ----R~~~~~~i~~~~~-~~~~~~~vi~~GDfN~r~~~~ 179 (282) T 2imq_X 146 ----TKYAYDTRLDYSK-KDDPSDFLFWIGDLNVRVETN 179 (282) T ss_dssp ----SSSSCCGGGCTTS-SSSCCSEEEEEEECSCCBCSC T ss_pred ----HHHHHHHHHHCCC-CCCCCCEEECCCCCCCCCCCC T ss_conf ----8777654431034-467777057444357444357 No 6 >>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} (A:) Probab=99.71 E-value=1.5e-16 Score=106.34 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=85.5 Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 89988731007677755666766668799999999999751898999972799889998726232216774035787650 Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHAM 86 (231) Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (231) |||+||||++ ...+.+.++++|...+|||||||||..............+.+. .......... T Consensus 1 lrv~t~Ni~~----------------~~~r~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 63 (256) T 2jc4_A 1 MKITTWNVNS----------------LNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWH-CVWSGQKTYN 63 (256) T ss_dssp CEEEEEECSC----------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCE-EEEECCSSSC T ss_pred CEEEEEECCC----------------HHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCHHHHHHCCCC-EEEECCCCCC T ss_conf 9899998298----------------9999999999998689988999932688100897786102452-0220122332 Q ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 35688614641010000122146756554457504999998499789999975116888875430025457887548999 Q gi|254780797|r 87 HTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATW 166 (231) Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~ 166 (231) ..+++++............. .....+.. ......+ +.+.+.+....... .......+..|... T Consensus 64 g~~i~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 126 (256) T 2jc4_A 64 GVAIVSRSVPQDVHFGLPAL-------PDDPQRRV--IAATVSG--VRVINVYCVNGEAL------DSPKFKYKEQWFAA 126 (256) T ss_dssp CEEEEESSCCEEEEESCTTS-------TTCCSCCE--EEEEETT--EEEEEEECCCCCST------TSHHHHHHHHHHHH T ss_pred CCCCEECCCCCCCCCCCCCC-------CCCCHHCE--EEEECCC--CEEEEEEECCCCCC------CCHHHHHHHHHHHH T ss_conf 22210002653011235764-------55611215--8874288--08988851268765------32123334455677 Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCC Q ss_conf 999999740488789999136888462 Q gi|254780797|r 167 LKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231) Q Consensus 167 l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231) +.+.++.....+.++|++||||..... T Consensus 127 ~~~~~~~~~~~~~~~i~~gd~N~~~~~ 153 (256) T 2jc4_A 127 LTEFVRDEMTRHGKLVLLGDFNIAPAD 153 (256) T ss_dssp HHHHHHHHHTTCSSEEEEEECCCCCSG T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCC T ss_conf 776666641147763100000124410 No 7 >>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} (A:) Probab=99.71 E-value=7.3e-16 Score=102.67 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=94.6 Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 89988731007677755666766668799999999999751898999972799889998726232216774035787650 Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHAM 86 (231) Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (231) .||+||||.++.... .......+++.|+++|+..+|||||||||+.............+.++ .......... T Consensus 1 ~Rv~t~Nv~~~~~~~-------~~~~~~~r~~~i~~~I~~~~pDIi~LQEv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 72 (257) T 3l1w_A 1 XKIATYNVRVDTEYD-------QDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTCLS-AEREGDGQGE 72 (257) T ss_dssp CEEEEEECCCCCGGG-------GGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHSSSEEEE-EESSSSSCSC T ss_pred CEEEEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEE-EECCCCCCCC T ss_conf 989999678087886-------44589999999999998639999999868678988887500364114-4025776661 Q ss_pred EEEEEEECCCCEEEEEECCCCCCCC-----CCCCCCCCEEEE--EEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHH Q ss_conf 3568861464101000012214675-----655445750499--999849978999997511688887543002545788 Q gi|254780797|r 87 HTAIVIRKGAIHLLQKSYLPMDTEG-----LDSKAGKRRAVE--ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYM 159 (231) Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~--~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~ 159 (231) ..+.+++.................. ............ ......+..+.++++|+.... ... T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 140 (257) T 3l1w_A 73 GLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHIS------------AHA 140 (257) T ss_dssp EEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC------------HHH T ss_pred EEEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCC------------HHH T ss_conf 56899716766345302110366743011245555552467889886378707999712566663------------156 Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC Q ss_conf 75489999999997404887899991368884622 Q gi|254780797|r 160 LNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231) Q Consensus 160 ~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231) +..|...+...+.. .....+++++||||...... T Consensus 141 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 174 (257) T 3l1w_A 141 RLAGXTVILEELHD-KIAQYPTLLXGDFNAESGEE 174 (257) T ss_dssp HHHHHHHHHHHTHH-HHHHSCEEEEEECCCCTTSH T ss_pred HHHHHHHHHHHHHH-HCCCCCEEECCCCCCCCCHH T ss_conf 78999999999986-06689878568788996412 No 8 >>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} (A:) Probab=99.70 E-value=2.2e-16 Score=105.46 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=81.3 Q ss_pred CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECC Q ss_conf 6654899887310076777556667666687999999999997518989999727998--89998726232216774035 Q gi|254780797|r 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSN 80 (231) Q Consensus 3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~ 80 (231) .+.+|||+||||+++ ...+.+.++++|+..+|||||||||... .....+....++.+. .... T Consensus 58 ~~~~lrv~T~Nv~~~---------------~~~~~~~i~~~i~~~~pDVi~lQEv~~~~~~~~~~~~~~~~~~~~-~~~~ 121 (318) T 1hd7_A 58 KPATLKICSWNVDGL---------------RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ-YWSA 121 (318) T ss_dssp CBCCEEEEEEECSSH---------------HHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEE-EEEC T ss_pred CCCCEEEEEEECCCH---------------HHHHHCCHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCCCE-EEEE T ss_conf 998779999983898---------------985554799999767995899985646927689888960799734-9998 Q ss_pred CCCCCCEEEEEE--ECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHH Q ss_conf 787650356886--146410100001221467565544575049999984997899999751168888754300254578 Q gi|254780797|r 81 TDKHAMHTAIVI--RKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCY 158 (231) Q Consensus 81 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~ 158 (231) ......+.++++ +............. ........+... ...+.++++|+...... ..... T Consensus 122 ~~~~~~~~~~~i~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~ 183 (318) T 1hd7_A 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDE-------EHDQEGRVIVAE----FDSFVLVTAYVPNAGRG-------LVRLE 183 (318) T ss_dssp C-----CCCEEEEESSCCSEEEESCSCG-------GGSSSSCEEEEE----CSSCEEEEEECCCCCGG-------GTTHH T ss_pred ECCCCCCCCEEEEEECCCCCCCCCCCCC-------CCCHHHEEEEEE----ECCEEEEEEECCCCCCC-------CHHHH T ss_conf 6687675561379712510122221345-------545002158999----58879999957776676-------17889 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC Q ss_conf 87548999999999740488789999136888462 Q gi|254780797|r 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231) Q Consensus 159 ~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231) .+..+.+.+.+++... ....++|++||||..... T Consensus 184 ~~~~~~~~l~~~~~~~-~~~~~~i~~GD~N~~~~~ 217 (318) T 1hd7_A 184 YRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEE 217 (318) T ss_dssp HHHHHHHHHHHHHHHH-HHHSCEEEEEECSCCCSG T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCH T ss_conf 9999888999998886-227753750663446516 No 9 >>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A (A:) Probab=99.67 E-value=1.1e-15 Score=101.68 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=87.7 Q ss_pred CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEE-EC Q ss_conf 665489988731007677755666766668799999999999751898999972799889--998726232216774-03 Q gi|254780797|r 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYS-GS 79 (231) Q Consensus 3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~-~~ 79 (231) ..++|||+||||+++ ...+.+.++++|+..+||||||||+..... ...+.....+.+.+. .. T Consensus 25 ~~~~lkV~T~Nv~~~---------------~~~~~~~~~~~i~~~~pDIi~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (285) T 2o3h_A 25 KPATLKIASWNVDGL---------------RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP 89 (285) T ss_dssp CBCCEEEEEEECSSH---------------HHHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB T ss_pred CCCCEEEEEEEECCH---------------HHHHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEE T ss_conf 988679999981787---------------77223468999974899899997203682338886761578744666532 Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE-EECCEEEEEEEEEECCCCCCCCCCCHHHHHHH Q ss_conf 57876503568861464101000012214675655445750499999-84997899999751168888754300254578 Q gi|254780797|r 80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILF-EVDGRKIWLLDIHLKSFCFLDSIEDSYISSCY 158 (231) Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~ 158 (231) .........+++++............. ........+.... ......+.+.++|+.. .... T Consensus 90 ~~~~~~~g~~i~sr~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 150 (285) T 2o3h_A 90 SDKEGYSGVGLLSRQCPLKVSYGIGDE-------EHDQEGRVIVAEFDSFVLVTAYVPNAGRGL------------VRLE 150 (285) T ss_dssp C--CCSCCEEEEESSCCSEEEESCSCG-------GGSSBCCEEEEECSSCEEEEEECCCCCGGG------------TTHH T ss_pred CCCCCCCCCCEEECCCCCEEEEEECCC-------CCCCCCEEEEEEEECCEEEEEECCCCCCCC------------HHHH T ss_conf 012555431013046870368740125-------545422389998504240014225578654------------0123 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC Q ss_conf 87548999999999740488789999136888462 Q gi|254780797|r 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231) Q Consensus 159 ~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231) .+..+.+.+.+.+.+. ....++|++||||..... T Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~i~~gd~~~~~~~ 184 (285) T 2o3h_A 151 YRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEE 184 (285) T ss_dssp HHHHHHHHHHHHHHHH-HTTSCEEEEEECSCCCSG T ss_pred HHHHEEECCCCCCCCC-CCCCEEEECCCCCCCCCH T ss_conf 3200110241121112-455337740445457313 No 10 >>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:) Probab=99.65 E-value=5.4e-15 Score=98.02 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=85.6 Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEEECCCCC Q ss_conf 489988731007677755666766668799999999999751898999972799889--998726232216774035787 Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYSGSNTDK 83 (231) Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (231) +|||+||||+++ ..+.+.+.+.|.+.+|||||||||..... .........|.+... ... T Consensus 1 tlrv~t~Nv~~~----------------~~r~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~~~~~~~~~---~~~ 61 (257) T 2voa_A 1 MLKIATFNVNSI----------------RSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFS---GSK 61 (257) T ss_dssp CEEEEEEECSCG----------------GGTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEE---EET T ss_pred CEEEEEEEECCH----------------HHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCEEEEC---CCC T ss_conf 939999980989----------------9989999999986799889998261893668886761246247860---356 Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548 Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231) Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231) .....+++++.+........... .....+. ......+........|..+.. .......+..+ T Consensus 62 ~~~g~~i~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 123 (257) T 2voa_A 62 GRNGVAIASLEEPEDVSFGLDSE-------PKDEDRL---IRAKIAGIDVINTYVPQGFKI--------DSEKYQYKLQW 123 (257) T ss_dssp TEEEEEEEESSCCEEEEESCSSS-------SCCGGGE---EEEEETTEEEEEEECCCCSCT--------TSHHHHHHHHH T ss_pred CCCCCEEECCCCCEEEEECCCCC-------CCCCCEE---EEEEECCEEEEEEEEECCCCC--------CHHHHHHHHHH T ss_conf 66652122157750378413333-------3556606---886307747999986148878--------64777888888 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCC Q ss_conf 99999999974048878999913688846 Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231) Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231) ...+...+........++|++||||.... T Consensus 124 ~~~~~~~~~~~~~~~~~~i~~gd~n~~~~ 152 (257) T 2voa_A 124 LERLYHYLQKTVDFRSFAVWCGDMNVAPE 152 (257) T ss_dssp HHHHHHHHHHHCCTTSCEEEEEECSCCCS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 89898888764200122101444233640 No 11 >>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} (A:18-321) Probab=99.60 E-value=6.1e-15 Score=97.77 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=85.7 Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCH----------HHHH-------HH Q ss_conf 48998873100767775566676666879999999999975189899--99727998----------8999-------87 Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIV--CLQEIGSY----------EAIK-------RV 66 (231) Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi--~LQEv~~~----------~~~~-------~~ 66 (231) +|+|+||||+...++... ......+...+|||+ ++||+... .... .. T Consensus 9 ~i~i~TwNvng~~~~~~l--------------~~~~~~~~~~~~Di~vl~~Qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (304) T 1i9z_A 9 KIFVASYNLNGCSATTKL--------------ENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRL 74 (304) T ss_dssp EEEEEEEECTTCCCCSCC--------------HHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCCCCHHH--------------HHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 999986236688886778--------------987487888877679986244444223443057885327899999987 Q ss_pred H--CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCC Q ss_conf 2--62322167740357876503568861464101000012214675655445750499999849978999997511688 Q gi|254780797|r 67 F--PNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFC 144 (231) Q Consensus 67 ~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~ 144 (231) + ....+..+.........+....++++.........................++.+.+.+...+..++++|+||+++. T Consensus 75 l~~~~~~~~~y~~~~~~~~~~~~i~vf~r~~~~~~i~~~~~~~v~~g~~~~~~~kG~v~~~~~~~~~~i~~i~~hlp~~~ 154 (304) T 1i9z_A 75 LNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGY 154 (304) T ss_dssp HHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCS T ss_pred HHCCCCCCCCEEEEEEEEEEEEEEEEEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECHHCCC T ss_conf 64024678753798641271289999982553323442033246534553114676369999988947999986041166 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCEEEEEECCCCCC Q ss_conf 88754300254578875489999999----9974048878999913688846 Q gi|254780797|r 145 FLDSIEDSYISSCYMLNLQATWLKQW----VDQKNNLNMPFIIAGDFNRKIN 192 (231) Q Consensus 145 ~~~~~~~~~~~~~~~~~~q~~~l~~~----i~~~~~~~~~vii~GDFN~~~~ 192 (231) .... .|..+...+.+. .........++|++||||-++. T Consensus 155 ~~~~----------~r~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDlN~ri~ 196 (304) T 1i9z_A 155 TNYD----------ERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRIS 196 (304) T ss_dssp SCHH----------HHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBS T ss_pred HHHH----------HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEC T ss_conf 1554----------54253999999741258865334756999535330330 No 12 >>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} (A:) Probab=99.57 E-value=6.8e-14 Score=92.17 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=76.9 Q ss_pred CCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECC Q ss_conf 98665489988731007677755666766668799999999999751898999972799889998726232216774035 Q gi|254780797|r 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSN 80 (231) Q Consensus 1 ~~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~ 80 (231) |.+..+|||+||||+.+ .++.+.+.+.+++.+|||+||||...... . .. T Consensus 2 ~~~~~~mki~swNVnGl----------------ra~~~~l~~~l~~~~~DvicLQEtk~~~~------------~-~~-- 50 (240) T 2ei9_A 2 MDIRPRLRIGQINLGGA----------------EDATRELPSIARDLGLDIVLVQEQYSMVG------------F-LA-- 50 (240) T ss_dssp ----CEEEEEEEECTTC----------------HHHHHTHHHHHHHHTCSEEEEESCCTTSS------------S-EE-- T ss_pred CCCCCCCEEEEEECCCC----------------HHHHHHHHHHHHHHCCCEEEEECCCCCCC------------C-CC-- T ss_conf 87767228987706883----------------78999999999976999999944463798------------5-80-- Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 78765035688614641010000122146756554457504999998499789999975116888875430025457887 Q gi|254780797|r 81 TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYML 160 (231) Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~ 160 (231) .......++++++..+....... . .. ......+..+...+.|++++.+.+.... T Consensus 51 ~~~~~~Gv~~~~~~~~~~~~~~~--~------~~-----~~~~r~i~~~~~~~~l~~vY~P~~~~~~------------- 104 (240) T 2ei9_A 51 QCGAHPKAGVYIRNRVLPCAVLH--H------LS-----STHITVVHIGGWDLYMVSAYFQYSDPID------------- 104 (240) T ss_dssp CCSSSCSEEEEESSTTSCEEECG--G------GC-----CSSEEEEEETTTTEEEEEEECCTTSCSH------------- T ss_pred CCCCCCCEEEEEECCCCCEEEEE--C------CC-----CCCEEEEECCCCEEEEEEEECCCCCCHH------------- T ss_conf 35688828999978887345532--3------78-----5558999728945999997068998632------------- Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC Q ss_conf 54899999999974048878999913688846 Q gi|254780797|r 161 NLQATWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231) Q Consensus 161 ~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231) ......+..+ ....+.|+|+|||||.-+. T Consensus 105 ~~~~~~~~~~---~~~~~~~~ii~GDfNva~~ 133 (240) T 2ei9_A 105 PYLHRLGNIL---DRLRGARVVICADTNAHSP 133 (240) T ss_dssp HHHHHHHHHH---HHTTTSCEEEEEECCCCCG T ss_pred HHHHHHHHHH---HCCCCCCEEEECCCCCCCH T ss_conf 8999999887---4267887798120023570 No 13 >>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} (A:) Probab=99.55 E-value=1.8e-13 Score=89.95 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=81.2 Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH--HHHCCCCCEEEEEECCCCC Q ss_conf 48998873100767775566676666879999999999975189899997279988999--8726232216774035787 Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK--RVFPNDKWDILYSGSNTDK 83 (231) Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~--~~~~~~~~~~~~~~~~~~~ 83 (231) +|||+||||+++ ...+.+.+++.|++.+|||||||||....... ..+.. .+.++........ T Consensus 1 tlrv~t~Ni~~~---------------~~~~~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 64 (259) T 2jc5_A 1 MLKIISANVNGI---------------RSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNP-HGMHGHWHCAEKR 64 (259) T ss_dssp CEEEEEEECSSH---------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSG-GGCEEEEECCSST T ss_pred CEEEEEEECCCH---------------HHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHHCC-CCCCCEEECCCCC T ss_conf 929999974378---------------887661299999747999999983326810079878512-0122102100256 Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548 Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231) Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231) .....+++++.+............ ....... +.....+ +.+.+.+...... .......+..+ T Consensus 65 ~~~g~~i~sr~p~~~~~~~~~~~~-------~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~ 126 (259) T 2jc5_A 65 GYSGVAVYSKRKPDNVQIGMGIEE-------FDREGRF--VRCDFGR--LSVISLYLPSGSS-------AEERQQVKYRF 126 (259) T ss_dssp TCCCEEEEESSCCSEEEESCSCHH-------HHTTCCE--EEEEETT--EEEEEEECCCCTT-------CHHHHHHHHHH T ss_pred CCEEEECCCCCCCEEEEECCCCCC-------CCCCCEE--EEEEECC--EEEEEEEEEECCC-------CCCCHHHHHHH T ss_conf 741321023678577873378764-------3200002--0068798--9998663100331-------11213566655 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCC Q ss_conf 9999999997404887899991368884 Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231) Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231) ...+..........+.+.+++||||... T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259) T 2jc5_A 127 LDAFYPMLEAMKNEGRDIVVCGDWNIAH 154 (259) T ss_dssp HHHHHHHHHHHHHTCSEEEEEEECCCCC T ss_pred HHHHHHCCCCCCCCCCCCEECCCCCCCC T ss_conf 4432110211233444311100001242 No 14 >>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} (A:) Probab=99.52 E-value=2.5e-12 Score=83.87 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=88.2 Q ss_pred CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 66548998873100767775566676666879999999999975189899997279988999872623221677403578 Q gi|254780797|r 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTD 82 (231) Q Consensus 3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231) -+.+|||+||||+.+ +...+...|++.|.+.+||||||||+..............+.+.+.. ... T Consensus 4 ~~~~lrV~T~Nv~g~--------------~~~~~~~~i~~~i~~~~pDIi~lQE~~~~~~~~~~~~~~~~~~~~~~-~~~ 68 (238) T 1vyb_A 4 SNSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA-NGK 68 (238) T ss_dssp CCCCEEEEEEECSCC--------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEE-CCS T ss_pred CCCCCEEEEEECCCC--------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCC-CCC T ss_conf 989869999993886--------------22454789999998769909999846136555403332144430000-002 Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHH Q ss_conf 76503568861464101000012214675655445750499999849978999997511688887543002545788754 Q gi|254780797|r 83 KHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNL 162 (231) Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~ 162 (231) ......+++++.+........... .........+...+..+.++++|+..... T Consensus 69 ~~~~g~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 121 (238) T 1vyb_A 69 QKKAGVAILVSDKTDFKPTKIKRD----------KEGHYIMVKGSIQQEELTILNIYAPNTGA----------------- 121 (238) T ss_dssp SSSCCEEEEECTTCCCEEEEEEEC----------TTSSEEEEEEEETTEEEEEEEEECCSSSH----------------- T ss_pred CCCCCCEEEEECCCCCCCCCCCCC----------CCCCEEEEEEEECCCCEEEEEECCCCCCC----------------- T ss_conf 232342269841443324564211----------14521356886236866887522010220----------------- Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCC Q ss_conf 89999999997404887899991368884 Q gi|254780797|r 163 QATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231) Q Consensus 163 q~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231) +................+.+..||+|... T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (238) T 1vyb_A 122 PRFIKQVLSDLQRDLDSHTLIMGDFNTPL 150 (238) T ss_dssp HHHHHHHHHHTTTTCCTTEEEEEECSSCS T ss_pred HHHHHHHHHHHHCCCHHHEEEHHHHCCCC T ss_conf 78887777655202401114074533566 No 15 >>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} (A:) Probab=99.45 E-value=1.9e-11 Score=79.10 Aligned_cols=146 Identities=16% Similarity=0.056 Sum_probs=83.6 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232216774035787 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK 83 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231) +.+|||+||||+++ ..+.+.|++.|++.+||||||||+........... ...+.+....... T Consensus 17 ~~~lrv~t~Ni~~~----------------~~~~~~l~~~i~~~~pDIv~lQE~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (245) T 1wdu_A 17 GPPYRVLQANLQRK----------------KLATAELAIEAATRKAAIALIQEPYVGGAKSMKGF--RGVRVFQSTAQGD 78 (245) T ss_dssp -CCEEEEEEECTTC----------------HHHHHHHHHHHHHHTCSEEEEESCCC------CCC--SSCEEEECCCCTT T ss_pred CCCEEEEEECCCCC----------------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHC--CCCEEEEEECCCC T ss_conf 99879998847987----------------66899999999861998999987887776520002--5611367645689 Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548 Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231) Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231) .+...++++.............. ......+.....+..+.++++|.+..... +... T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 134 (245) T 1wdu_A 79 GTVKAAIAVFDHDLDVIQYPQLT-----------TNNIVVVGIRTRAWEITLVSYYFEPDKPI-------------ESYL 134 (245) T ss_dssp CCCCEEEEECCSSCEEEECTTTC-----------CSSEEEEEEECSSCEEEEEEEECCTTSCS-------------HHHH T ss_pred CCCEEEEEEECCCCCEEEECCCC-----------CCCEEEEEEEECCCCEEEEEEECCCCCCH-------------HHHH T ss_conf 98679999971564135514888-----------79859999990892089999960874431-------------8999 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCC Q ss_conf 9999999997404887899991368884622 Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231) Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231) .. ..... ......+.+++||||...... T Consensus 135 ~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (245) T 1wdu_A 135 EQ-IKRVE--RKMGPKRLIFGGDANAKSTWW 162 (245) T ss_dssp HH-HHHHH--HTTCSSSEEEEEECCCCCGGG T ss_pred HH-HHHHH--HHCCCCEEEECCCCCCCCHHH T ss_conf 99-99998--752797399805467477111 No 16 >>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467) Probab=99.28 E-value=1.5e-11 Score=79.72 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=59.5 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHC--CCCCEEEEEEC Q ss_conf 6548998873100767775566676666879999999999975189899997279988--9998726--23221677403 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE--AIKRVFP--NDKWDILYSGS 79 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~--~~~~~~~--~~~~~~~~~~~ 79 (231) +.+|||+||||+.+. ...+.+.+.++++|++.+||||||||+.... ....... ..+|.+++... T Consensus 13 ~~~lkIlT~NV~gl~------------~~~k~~~~~l~~~i~~~dpDVIcLQEv~~~~~~~~~~~~~~~~~~y~~~~~~~ 80 (126) T 2j63_A 13 SRMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC 80 (126) T ss_dssp TTEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC T ss_pred CCEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECC T ss_conf 335799999015677------------76432548999999854998799987652621169777864227862687334 Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCC Q ss_conf 5787650356886146410100001221467 Q gi|254780797|r 80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTE 110 (231) Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 110 (231) ..+.+....++++++++.......-++.... T Consensus 81 ~~~~g~~GvaIlSR~pi~~~~~~~~~~~~~~ 111 (126) T 2j63_A 81 AFKRGYSGTRTYMKNSTTASYVVDCFPMPTV 111 (126) T ss_dssp SSSTTSCCEEEEEECCCCGGGEEEEEECTTC T ss_pred CCCCCCCCEEEEECCCCCHHHCCEEEECCCC T ss_conf 5654546679998467647121078875899 No 17 >>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:1-87,B:228-260) Probab=98.86 E-value=5.9e-09 Score=65.87 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=53.0 Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHH------CCCCCEEEEEE Q ss_conf 899887310076777556667666687999999999997518989999727998--8999872------62322167740 Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVF------PNDKWDILYSG 78 (231) Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~------~~~~~~~~~~~ 78 (231) |||+||||++|+. ...+.++....|++.|. ++||++||||.+. ..+..++ ....|.+..+. T Consensus 1 lrVaSfNv~nfg~---------~k~~~~~~~~~ia~ii~--~~DIigLqEV~~~~~~ai~~Lv~~Ln~~~g~~y~yv~s~ 69 (120) T 2a40_B 1 LKIAAFNIRTFGE---------TKMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE 69 (120) T ss_dssp CEEEEEEEEEESH---------HHHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC T ss_pred CEEEEEECCCCCC---------CCCCHHHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 9899995883377---------86664999999999738--999899980337774089999987530367750489504 Q ss_pred CC-CCCCCCEEEEEEECC Q ss_conf 35-787650356886146 Q gi|254780797|r 79 SN-TDKHAMHTAIVIRKG 95 (231) Q Consensus 79 ~~-~~~~~~~~g~~~~~~ 95 (231) +. .+...++.+++++.+ T Consensus 70 ~~g~~~~~E~~aiiYr~d 87 (120) T 2a40_B 70 PLGRNSYKERYLFLFRPN 87 (120) T ss_dssp CBCSSSCCBEEEEEECTT T ss_pred CCCCCCCCEEEEEEEECC T ss_conf 677776652568875034 No 18 >>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} (A:) Probab=98.76 E-value=7.1e-08 Score=60.13 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=73.4 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHC-CCCEEEEECCCCHHH----HHHHHCCC---CCEEE Q ss_conf 5489988731007677755666766668799999-999999751-898999972799889----99872623---22167 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYA-LLQKYAEQL-DADIVCLQEIGSYEA----IKRVFPND---KWDIL 75 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~-~~DVi~LQEv~~~~~----~~~~~~~~---~~~~~ 75 (231) +..||+|||++.-+ ..++.+.. .+..+|... ..||+++||...--. ........ -.+|. T Consensus 14 ~d~~v~TWNlQGss------------a~tesKWn~~Vrqli~g~n~~dIl~iQEAG~lP~sA~~t~r~~~~~g~pv~Ey~ 81 (262) T 2f1n_A 14 TDFRVATWNLQGAS------------ATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELI 81 (262) T ss_dssp GGCCEEEEEEEECT------------TSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEE T ss_pred CCEEEEEEECCCCC------------CCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHH T ss_conf 87299998208776------------765454079999999738999999998278533531567654321455300000 Q ss_pred -------------EEECCCCCCCCEE--EEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEE Q ss_conf -------------7403578765035--6886146410100001221467565544575049999984997899999751 Q gi|254780797|r 76 -------------YSGSNTDKHAMHT--AIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHL 140 (231) Q Consensus 76 -------------~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL 140 (231) .+....+...-+. ++.++........ ........|+++.+.+.. -.++++|- T Consensus 82 Wnlgt~sRp~~vyIYys~vD~ganRvNlAIVSr~~ADev~v---------l~p~~~~sRPiiGIRign----d~FFtiHA 148 (262) T 2f1n_A 82 WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFV---------LSPVRQGGRPLLGIRIGN----DAFFTAHA 148 (262) T ss_dssp EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEE---------ECCSSTTCCCEEEEEETT----EEEEEEEC T ss_pred HCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEE---------CCCCCCCCCCEEEEEECC----EEEEEEEE T ss_conf 02221358734799974256433042229997025545324---------278655565206999899----69999982 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEEEEEECCCCCCC Q ss_conf 16888875430025457887548999999999740---488789999136888462 Q gi|254780797|r 141 KSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN---NLNMPFIIAGDFNRKINH 193 (231) Q Consensus 141 ~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~---~~~~~vii~GDFN~~~~~ 193 (231) .|+...+.. .-+..+..+..... .+..+.+++||||..+.. T Consensus 149 la~GG~DA~------------aiV~~V~~~f~~~~~p~~p~~~W~I~GDFNR~P~~ 192 (262) T 2f1n_A 149 IAMRNNDAP------------ALVEEVYNFFRDSRDPVHQALNWMILGDFNREPAD 192 (262) T ss_dssp CSSSSCSHH------------HHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHH T ss_pred CCCCCCCHH------------HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH T ss_conf 599973279------------99999999999988754578987997601258623 No 19 >>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:88-227) Probab=98.18 E-value=2e-05 Score=47.05 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=42.7 Q ss_pred CCCCCCCEEEEEEEEECC---EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCEEEEEE Q ss_conf 554457504999998499---7899999751168888754300254578875489999---9999974048878999913 Q gi|254780797|r 113 DSKAGKRRAVEILFEVDG---RKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWL---KQWVDQKNNLNMPFIIAGD 186 (231) Q Consensus 113 ~~~~~~r~~~~~~~~~~g---~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l---~~~i~~~~~~~~~vii~GD 186 (231) ....+.|.+..+.|..++ +.++++++|.... .+..++.+| .+.+.++. ...++|++|| T Consensus 18 ~~d~F~ReP~~v~F~~~~~~~~df~lv~~Ht~p~---------------~~~~E~~~L~dV~~~v~~~~-~~~dviilGD 81 (140) T 2a40_B 18 GNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS---------------DAVAEINSLYDVYLDVQQKW-HLNDVMLMGD 81 (140) T ss_dssp HHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG---------------GHHHHHHHHHHHHHHHHHHH-CCCCEEEEEE T ss_pred CCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCC---------------CHHHHHHHHHHHHHHHHHHC-CCCCEEEECC T ss_conf 4422220103688996057872899850233332---------------14899999899999887504-6787798341 Q ss_pred CCCCCCC Q ss_conf 6888462 Q gi|254780797|r 187 FNRKINH 193 (231) Q Consensus 187 FN~~~~~ 193 (231) ||...++ T Consensus 82 FNa~c~y 88 (140) T 2a40_B 82 FNADCSY 88 (140) T ss_dssp CCCSTTT T ss_pred CCCCCCC T ss_conf 2567774 No 20 >>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:1-134,A:233-439) Probab=97.98 E-value=9.6e-05 Score=43.45 Aligned_cols=60 Identities=17% Similarity=0.033 Sum_probs=35.0 Q ss_pred EEEEEEEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHH-----------HHHHHCCCCCCEEEEEECCCC Q ss_conf 7899999751168888754300254578-87548999999-----------999740488789999136888 Q gi|254780797|r 131 RKIWLLDIHLKSFCFLDSIEDSYISSCY-MLNLQATWLKQ-----------WVDQKNNLNMPFIIAGDFNRK 190 (231) Q Consensus 131 ~~~~v~n~HL~s~~~~~~~~~~~~~~~~-~~~~q~~~l~~-----------~i~~~~~~~~~vii~GDFN~~ 190 (231) ..|+|+|++++.+.........++..+. .....++.+.+ .+....+.+.++|+|||||.- T Consensus 190 ~~i~IiNvYvPnGg~~~~r~~~~k~~w~~~l~~~l~~L~~~~~~f~~~l~~~~~~l~~~gkpVIl~GDfNVA 261 (341) T 2j63_A 190 SRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVA 261 (341) T ss_dssp CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCC T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCC T ss_conf 878998643566656530356778999999999999998766421012103444440467755871560245 No 21 >>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} (B:1-105,B:229-261) Probab=95.41 E-value=0.02 Score=31.15 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=26.0 Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCC-CCEEEEECCCC Q ss_conf 548998873100767775566676666879999-99999997518-98999972799 Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDY-ALLQKYAEQLD-ADIVCLQEIGS 59 (231) Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~-~DVi~LQEv~~ 59 (231) +..+|+|||++.-+ ..++... -.+..+|...+ .||+++||... T Consensus 3 ~D~~v~TWNlQGSS------------A~TESKWn~~Vrqli~G~n~~dIlmiQEAGs 47 (138) T 1sr4_B 3 SDFKVATWNLQGSS------------AVNESKWNINVRQLLSGEQGADILMVQEAGS 47 (138) T ss_dssp GGSCEEEEECCCCS------------SSSHHHHHHHHHHHHCSTTCCSEEEEESCCS T ss_pred CCCEEEEEECCCCC------------CCCCCCCHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 78889999789587------------8754320699999998568989999983676 No 22 >>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} (B:106-228) Probab=94.02 E-value=0.11 Score=27.08 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=34.7 Q ss_pred CCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCEEEEEECCCCC Q ss_conf 4575049999984997899999751168888754300254578875489999999997----404887899991368884 Q gi|254780797|r 116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQ----KNNLNMPFIIAGDFNRKI 191 (231) Q Consensus 116 ~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~----~~~~~~~vii~GDFN~~~ 191 (231) ...|+++.+++.. -.++++|.-+....+... -+..+..+... -..+..+++++||||..+ T Consensus 14 ~~sRPiiGIRign----d~FFsiHALa~GG~DA~a------------iv~~v~~~f~~~~~~~~~~~~~W~I~GDFNR~P 77 (123) T 1sr4_B 14 LQSRPAVGIRIGT----DVFFTVHALATGGSDAVS------------LIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAP 77 (123) T ss_dssp SCCCCEEEEEETT----EEEEEEECCTTTTTTHHH------------HHHHHHHHHHC---CGGGGGCEEEEEEECSSCH T ss_pred CCCCEEEEEEEEC----CCCCEEEEECCCCCCHHH------------HHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCC T ss_conf 5410379999724----663038982388851788------------999999999998777505789789710026544 Q ss_pred CC Q ss_conf 62 Q gi|254780797|r 192 NH 193 (231) Q Consensus 192 ~~ 193 (231) .. T Consensus 78 ~~ 79 (123) T 1sr4_B 78 AN 79 (123) T ss_dssp HH T ss_pred CC T ss_conf 62 No 23 >>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} (A:1-224) Probab=45.47 E-value=13 Score=16.11 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.8 Q ss_pred EEEEEECCCCC Q ss_conf 99975116888 Q gi|254780797|r 135 LLDIHLKSFCF 145 (231) Q Consensus 135 v~n~HL~s~~~ 145 (231) .+|+ |+-|+. T Consensus 145 qynV-LPqGWK 154 (224) T 1mu2_A 145 IYKV-LPQGWK 154 (224) T ss_dssp EESB-CCTTCT T ss_pred EEEE-ECCCCC T ss_conf 9963-378667 No 24 >>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP} (A:) Probab=43.44 E-value=19 Score=15.28 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=28.4 Q ss_pred CCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHCCCCEEEEECCC Q ss_conf 98665489988731007677755666766668799999---99999975189899997279 Q gi|254780797|r 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYA---LLQKYAEQLDADIVCLQEIG 58 (231) Q Consensus 1 ~~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~i~~~~~DVi~LQEv~ 58 (231) +.+.++|||+.-.+.- .....+.+++ .+.+...+.++|+|++.|.. T Consensus 15 ~~~~~~~kva~~Q~~~------------~~~~~~~n~~~i~~~~~~a~~~~adlvvfPE~~ 63 (283) T 3hkx_A 15 VIRGSHMRIALMQHTA------------RPLDPQHNLDLIDDAAARASEQGAQLLLTPELF 63 (283) T ss_dssp CCTTEEEEEEEEEBCC------------CTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTG T ss_pred EEECCCCEEEEEECCC------------CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 5507987899998889------------889999999999999999998879799958775 No 25 >>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} (A:1-117,A:290-322) Probab=38.32 E-value=23 Score=14.83 Aligned_cols=24 Identities=4% Similarity=-0.256 Sum_probs=18.4 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 879999999999975189899997 Q gi|254780797|r 32 REDNDYALLQKYAEQLDADIVCLQ 55 (231) Q Consensus 32 ~~~~~~~~i~~~i~~~~~DVi~LQ 55 (231) ...+.++.+.+.+...+||.|.+- T Consensus 35 ~~~~~l~~l~~~i~~~~pD~Vi~~ 58 (150) T 2nxf_A 35 GSADLLRDAVLQWRRERVQCVVQL 58 (150) T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEC T ss_pred HHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 889999999999742799999999 No 26 >>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ... (A:) Probab=36.29 E-value=24 Score=14.70 Aligned_cols=18 Identities=0% Similarity=-0.127 Sum_probs=10.0 Q ss_pred CCCCHHHHHHHHHHHHHH Q ss_conf 666879999999999975 Q gi|254780797|r 29 SVIREDNDYALLQKYAEQ 46 (231) Q Consensus 29 ~~~~~~~~~~~i~~~i~~ 46 (231) ..+-+.+.++.|..+|.+ T Consensus 40 QyPL~~ek~~al~~~v~~ 57 (255) T 3fsi_A 40 QYPMSQEARLGIKPHIQR 57 (255) T ss_dssp CCCCCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 867999999999999999 No 27 >>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} (A:) Probab=34.75 E-value=20 Score=15.10 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=10.3 Q ss_pred CCCCEEEEEECCCCC Q ss_conf 887899991368884 Q gi|254780797|r 177 LNMPFIIAGDFNRKI 191 (231) Q Consensus 177 ~~~~vii~GDFN~~~ 191 (231) ....|-|.||||.|- T Consensus 20 ~a~~V~v~GsFn~W~ 34 (96) T 1z0n_A 20 GGKEVYLSGSFNNWS 34 (96) T ss_dssp CCSCEEEEEGGGTTC T ss_pred CCEEEEEEEEECCCC T ss_conf 998999998807886 No 28 >>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} (A:1-98,A:224-274) Probab=33.30 E-value=28 Score=14.38 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=16.4 Q ss_pred CCCHHHHHHHHHHHHHHC--CCCEEEEE Q ss_conf 668799999999999751--89899997 Q gi|254780797|r 30 VIREDNDYALLQKYAEQL--DADIVCLQ 55 (231) Q Consensus 30 ~~~~~~~~~~i~~~i~~~--~~DVi~LQ 55 (231) .....+.++.+.+.+.+. ++|+|.+- T Consensus 21 ~~~~~~~l~~ii~~i~a~~~~~D~Vvi~ 48 (149) T 3d03_A 21 FIDVNAANADVVSQLNALRERPDAVVVS 48 (149) T ss_dssp TBCHHHHHHHHHHHHHTCSSCCSEEEEE T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 7689999999999998358999999988 No 29 >>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} (A:) Probab=30.73 E-value=31 Score=14.14 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=27.0 Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHHHCCCCEEEEECCC Q ss_conf 654899887310076777556667666687999999999---9975189899997279 Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQK---YAEQLDADIVCLQEIG 58 (231) Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~i~~~~~DVi~LQEv~ 58 (231) |++|||+.-...- +......+.+++.+.+ .-.+.++|+|++-|.. T Consensus 1 s~~~kIa~~Q~~~----------~~~~~d~~~n~~~i~~~~~~A~~~gadlvvfPE~~ 48 (303) T 1uf5_A 1 TRQMILAVGQQGP----------IARAETREQVVVRLLDMLTKAASRGANFIVFPELA 48 (303) T ss_dssp CCEEEEEEEEBCC----------CCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTT T ss_pred CCEEEEEEECCCC----------CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 9479999992678----------68985899999999999999998889399908886 No 30 >>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:107-201) Probab=27.47 E-value=35 Score=13.82 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=16.5 Q ss_pred HHHHHHHHCCCCCCEEEEEECCCC Q ss_conf 999999740488789999136888 Q gi|254780797|r 167 LKQWVDQKNNLNMPFIIAGDFNRK 190 (231) Q Consensus 167 l~~~i~~~~~~~~~vii~GDFN~~ 190 (231) +.+.+++..+.|..+|+.||=|++ T Consensus 6 i~~~v~~~~~~Gy~iiiiGd~~HP 29 (95) T 3ke8_A 6 VHMEVARASRRGEESILIGHAGHP 29 (95) T ss_dssp HHHHHHHHHHTTCEEEEESCTTCH T ss_pred HHHHHHHHHCCCCEEEEEECCCCH T ss_conf 999999987189759999078878 No 31 >>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} (A:) Probab=23.96 E-value=41 Score=13.45 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=22.3 Q ss_pred CCCHHHHHHHHHHHHHH--CCCCEEEEECCC Q ss_conf 66879999999999975--189899997279 Q gi|254780797|r 30 VIREDNDYALLQKYAEQ--LDADIVCLQEIG 58 (231) Q Consensus 30 ~~~~~~~~~~i~~~i~~--~~~DVi~LQEv~ 58 (231) ....+.+++.+.+.|.+ .++|++++-|.. T Consensus 15 ~~d~~~n~~~~~~~i~~A~~gadlivfPE~~ 45 (266) T 2e11_A 15 WHDPAGNRDYYGALLEPLAGQSDLVILPETF 45 (266) T ss_dssp TTCHHHHHHHHHHHHGGGTTTCSEEECCTTT T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 7699999999999999973899899948864 No 32 >>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus} (A:97-193) Probab=20.88 E-value=48 Score=13.11 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=13.3 Q ss_pred HHHHHHHCCCCCCEEEEEECCCC Q ss_conf 99999740488789999136888 Q gi|254780797|r 168 KQWVDQKNNLNMPFIIAGDFNRK 190 (231) Q Consensus 168 ~~~i~~~~~~~~~vii~GDFN~~ 190 (231) .+.+++..+.|..+|+.||=|++ T Consensus 7 ~~~v~~~~~~Gy~iiiiG~~~HP 29 (97) T 3dnf_A 7 HEAVCQLTREGYFVVLVGEKNHP 29 (97) T ss_dssp HHHHHHHHHTTCEEEEESCTTCH T ss_pred HHHHHHHHHCCCEEEEECCCCCH T ss_conf 99999998579889998169980 No 33 >>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:585-763) Probab=20.64 E-value=49 Score=13.08 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=15.2 Q ss_pred HHHHHHHHHHCCCCEEEEECC Q ss_conf 999999997518989999727 Q gi|254780797|r 37 YALLQKYAEQLDADIVCLQEI 57 (231) Q Consensus 37 ~~~i~~~i~~~~~DVi~LQEv 57 (231) .+.+.+.+.+.+||+|||-=. T Consensus 62 ~e~l~~~~~~~~~diV~lS~~ 82 (179) T 3kp1_A 62 VEKLVDAAIELKADAILASTI 82 (179) T ss_dssp HHHHHHHHHHTTCSEEEEECC T ss_pred HHHHHHHHHHCCCCEEEEEHH T ss_conf 899999999769999997522 Done!