Query         gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 231
No_of_seqs    122 out of 2316
Neff          10.3
Searched_HMMs 33803
Date          Wed Jun  1 13:38:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780797.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2ddr_A Sphingomyelin phosphod  99.9 3.3E-23 9.9E-28  141.7  18.6  179    4-196     7-205 (306)
  2 >1zwx_A SMCL, sphingomyelinase  99.9 8.3E-23 2.5E-27  139.6  17.9  179    4-193     8-202 (301)
  3 >1ako_A Exonuclease III; AP-en  99.8 6.9E-19   2E-23  118.8  14.0  157    7-194     1-159 (268)
  4 >3g6s_A Putative endonuclease/  99.7 1.6E-16 4.8E-21  106.1  16.5  169    5-194     2-180 (267)
  5 >2imq_X Salivary nitrophorin;   99.7 3.4E-18 9.9E-23  115.1   5.2  162    6-194     8-179 (282)
  6 >2jc4_A Exodeoxyribonuclease I  99.7 1.5E-16 4.4E-21  106.3  12.4  153    7-193     1-153 (256)
  7 >3l1w_A Uncharacterized protei  99.7 7.3E-16 2.2E-20  102.7  14.9  167    7-194     1-174 (257)
  8 >1hd7_A DNA-(apurinic or apyri  99.7 2.2E-16 6.5E-21  105.5  12.0  156    3-193    58-217 (318)
  9 >2o3h_A DNA-(apurinic or apyri  99.7 1.1E-15 3.3E-20  101.7  12.2  156    3-193    25-184 (285)
 10 >2voa_A AF_EXO, XTHA, exodeoxy  99.6 5.4E-15 1.6E-19   98.0  13.7  150    6-192     1-152 (257)
 11 >1i9z_A Synaptojanin, phosphat  99.6 6.1E-15 1.8E-19   97.8  10.0  163    6-192     9-196 (304)
 12 >2ei9_A Non-LTR retrotransposo  99.6 6.8E-14   2E-18   92.2  13.0  132    1-192     2-133 (240)
 13 >2jc5_A Exodeoxyribonuclease;   99.6 1.8E-13 5.3E-18   89.9  13.7  152    6-191     1-154 (259)
 14 >1vyb_A ORF2 contains A revers  99.5 2.5E-12 7.3E-17   83.9  17.6  147    3-191     4-150 (238)
 15 >1wdu_A TRAS1 ORF2P; four-laye  99.4 1.9E-11 5.7E-16   79.1  17.4  146    4-194    17-162 (245)
 16 >2j63_A AP-endonuclease; base   99.3 1.5E-11 4.4E-16   79.7   8.3   95    4-110    13-111 (126)
 17 >2a40_B Deoxyribonuclease-1; W  98.9 5.9E-09 1.8E-13   65.9   6.8   78    7-95      1-87  (120)
 18 >2f1n_A CDT B, cytolethal dist  98.8 7.1E-08 2.1E-12   60.1   9.4  152    5-193    14-192 (262)
 19 >2a40_B Deoxyribonuclease-1; W  98.2   2E-05   6E-10   47.0   9.7   65  113-193    18-88  (140)
 20 >2j63_A AP-endonuclease; base   98.0 9.6E-05 2.8E-09   43.4  10.0   60  131-190   190-261 (341)
 21 >1sr4_B CDT B, cytolethal dist  95.4    0.02 5.8E-07   31.2   4.2   43    5-59      3-47  (138)
 22 >1sr4_B CDT B, cytolethal dist  94.0    0.11 3.4E-06   27.1   5.2   62  116-193    14-79  (123)
 23 >1mu2_A HIV-2 RT; HIV-2 revers  45.5      13 0.00039   16.1   2.1   10  135-145   145-154 (224)
 24 >3hkx_A Amidase; alpha-beta-BE  43.4      19 0.00056   15.3   8.5   46    1-58     15-63  (283)
 25 >2nxf_A Putative dimetal phosp  38.3      23 0.00067   14.8   2.7   24   32-55     35-58  (150)
 26 >3fsi_A RT, reverse transcript  36.3      24 0.00071   14.7   2.3   18   29-46     40-57  (255)
 27 >1z0n_A 5'-AMP-activated prote  34.7      20  0.0006   15.1   1.7   15  177-191    20-34  (96)
 28 >3d03_A Phosphohydrolase; glyc  33.3      28 0.00082   14.4   3.8   26   30-55     21-48  (149)
 29 >1uf5_A N-carbamyl-D-amino aci  30.7      31 0.00091   14.1   4.8   45    4-58      1-48  (303)
 30 >3ke8_A 4-hydroxy-3-methylbut-  27.5      35   0.001   13.8   2.4   24  167-190     6-29  (95)
 31 >2e11_A Hydrolase; dimethylars  24.0      41  0.0012   13.5  10.1   29   30-58     15-45  (266)
 32 >3dnf_A ISPH, LYTB, 4-hydroxy-  20.9      48  0.0014   13.1   2.4   23  168-190     7-29  (97)
 33 >3kp1_A D-ornithine aminomutas  20.6      49  0.0014   13.1   3.5   21   37-57     62-82  (179)

No 1  
>>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} (A:)
Probab=99.92  E-value=3.3e-23  Score=141.75  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=107.1

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHC---CCCCEEEEEECC
Q ss_conf             65489988731007677755666766668799999999999751898999972799889998726---232216774035
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFP---NDKWDILYSGSN   80 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~---~~~~~~~~~~~~   80 (231)
                      ..+|||+||||+++....      ......+.+++.+++.|...+|||||||||...........   ...+... ....
T Consensus         7 ~~~lrV~T~Nv~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~-~~~~   79 (306)
T 2ddr_A            7 NDTLKVMTHNVYMLSTNL------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQT-AVLG   79 (306)
T ss_dssp             CCEEEEEEEEEEECCTTT------CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEEC-CCTT
T ss_pred             CCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE-EEEE
T ss_conf             998799998678565677------887068899999999997679998999837776417999999887577403-4310


Q ss_pred             CCCCCC----------------EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCC
Q ss_conf             787650----------------3568861464101000012214675655445750499999849978999997511688
Q gi|254780797|r   81 TDKHAM----------------HTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFC  144 (231)
Q Consensus        81 ~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~  144 (231)
                      ......                ...++++........   ..............+..+.+.+..++..+.|+|+||+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~  156 (306)
T 2ddr_A           80 RSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQ---YVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAED  156 (306)
T ss_dssp             SCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEE---EECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCE---EEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCC
T ss_conf             3567765314421334411264379998752333300---2310235654223106999998069918999993243355


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             887543002545788754899999999-9740488789999136888462222
Q gi|254780797|r  145 FLDSIEDSYISSCYMLNLQATWLKQWV-DQKNNLNMPFIIAGDFNRKINHSHS  196 (231)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~q~~~l~~~i-~~~~~~~~~vii~GDFN~~~~~~~~  196 (231)
                      ........    ...+..+..++.+.+ ......+.++|+|||||..+.....
T Consensus       157 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~  205 (306)
T 2ddr_A          157 SMCGKTSP----ASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAEN  205 (306)
T ss_dssp             ------CH----HHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSS
T ss_pred             CCCCCCHH----HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHH
T ss_conf             55221013----78998888877666654212566618998347889762554


No 2  
>>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:)
Probab=99.91  E-value=8.3e-23  Score=139.64  Aligned_cols=179  Identities=15%  Similarity=0.113  Sum_probs=108.5

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH--HCCCCCEEEEEECCC
Q ss_conf             654899887310076777556667666687999999999997518989999727998899987--262322167740357
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV--FPNDKWDILYSGSNT   81 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~--~~~~~~~~~~~~~~~   81 (231)
                      ..+|||+||||+++....      ......+.+++.|++.|...+|||||||||.........  .....+.+.......
T Consensus         8 ~~~lrv~T~Nv~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (301)
T 1zwx_A            8 PGNFKITSHNVYLFSRNI------YPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGR   81 (301)
T ss_dssp             CCSCEEEEEEEEECCTTT------STTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS
T ss_pred             CCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf             998799998388676566------89816899999999998756998899985877005899999876532613310113


Q ss_pred             CCCCCE-------------EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCC
Q ss_conf             876503-------------5688614641010000122146756554457504999998499789999975116888875
Q gi|254780797|r   82 DKHAMH-------------TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDS  148 (231)
Q Consensus        82 ~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~  148 (231)
                      ......             .+.++..... ....................+..+.+.+...+..+.++|+||+++.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Hl~~~~~~~~  160 (301)
T 1zwx_A           82 SKHGWDKTEGNYSNFALEDGGVAVVSQWP-IVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLIS  160 (301)
T ss_dssp             CSTTCSEEEC-----CCBCCCCEEEESSC-EEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSC
T ss_pred             CCCCCCCCCCCCCCCEECCCEEEEEEECC-CHHHEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCC
T ss_conf             54433421134555303066079998416-20110341254555323357417999980699289999831455544543


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCC
Q ss_conf             43002545788754899999999-9740488789999136888462
Q gi|254780797|r  149 IEDSYISSCYMLNLQATWLKQWV-DQKNNLNMPFIIAGDFNRKINH  193 (231)
Q Consensus       149 ~~~~~~~~~~~~~~q~~~l~~~i-~~~~~~~~~vii~GDFN~~~~~  193 (231)
                      .    ......+..+...+.... ......+.|+|||||||..+.+
T Consensus       161 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~GDfN~~~~~  202 (301)
T 1zwx_A          161 K----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT  202 (301)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_conf             0----46789999999986422210135777459999777988873


No 3  
>>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} (A:)
Probab=99.81  E-value=6.9e-19  Score=118.77  Aligned_cols=157  Identities=16%  Similarity=0.152  Sum_probs=101.4

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEEECCCCCC
Q ss_conf             89988731007677755666766668799999999999751898999972799889--9987262322167740357876
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYSGSNTDKH   84 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~~~~~~~~   84 (231)
                      |||+||||+++.                .+.+.++++|.+.+||||||||+...+.  +........+.....   ....
T Consensus         1 lrv~s~Ni~~~~----------------~r~~~~~~~i~~~~pDVi~lQE~~~~~~~~~~~~~~~~~~~~~~~---~~~~   61 (268)
T 1ako_A            1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH---GQKG   61 (268)
T ss_dssp             CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEE---EETT
T ss_pred             CEEEEEEECCHH----------------HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEC---CCCC
T ss_conf             989999808899----------------869989999986799999999520581339987886569536531---4444


Q ss_pred             CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r   85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA  164 (231)
Q Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~  164 (231)
                      ....+++++...........       ..............+...+..+.++++|+++......     ......+..+.
T Consensus        62 ~~g~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  129 (268)
T 1ako_A           62 HYGVALLTKETPIAVRRGFP-------GDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDH-----PIKFPAKAQFY  129 (268)
T ss_dssp             EEEEEEEESSCCSEEEESST-------TCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTC-----TTHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCC-----HHHHHHHHHHH
T ss_conf             32220000124500013641-------0112354321000110134762467643205776331-----02335678899


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             999999997404887899991368884622
Q gi|254780797|r  165 TWLKQWVDQKNNLNMPFIIAGDFNRKINHS  194 (231)
Q Consensus       165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~~~  194 (231)
                      ..+.+.+........|+|++||||..+...
T Consensus       130 ~~~~~~~~~~~~~~~~~i~~gD~N~~~~~~  159 (268)
T 1ako_A          130 QNLQNYLETELKRDNPVLIMGDMNISPTDL  159 (268)
T ss_dssp             HHHHHHHHHHCCTTSCEEEEEECCCCCSGG
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf             999999998774278667642002475065


No 4  
>>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} (A:)
Probab=99.75  E-value=1.6e-16  Score=106.15  Aligned_cols=169  Identities=15%  Similarity=0.120  Sum_probs=91.1

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH--HCCCCCEEEEEECCCC
Q ss_conf             54899887310076777556667666687999999999997518989999727998899987--2623221677403578
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV--FPNDKWDILYSGSNTD   82 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~--~~~~~~~~~~~~~~~~   82 (231)
                      .+|||+||||+++.....       ......+++.|+++|++.+|||||||||.........  +....|.+... ....
T Consensus         2 ~~lki~t~Nv~~~~~~~~-------~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~-~~~~   73 (267)
T 3g6s_A            2 TDVRWATFNIRYDNPQDS-------LNNWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDLRAGLPEYDGIGVGR-DDGK   73 (267)
T ss_dssp             EEEEEEEEECCCCCGGGG-------GGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCTTEEEECCCT-TTSS
T ss_pred             CCEEEEEEECCCCCCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEECC-CCCC
T ss_conf             845999997683888855-------35899999999999986599899998377789999998612485266545-4787


Q ss_pred             CCCCEEEEEEECCCCEEEEEECCCCCCC----C--CCCCCCCCEEEEEEEE--ECCEEEEEEEEEECCCCCCCCCCCHHH
Q ss_conf             7650356886146410100001221467----5--6554457504999998--499789999975116888875430025
Q gi|254780797|r   83 KHAMHTAIVIRKGAIHLLQKSYLPMDTE----G--LDSKAGKRRAVEILFE--VDGRKIWLLDIHLKSFCFLDSIEDSYI  154 (231)
Q Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~r~~~~~~~~--~~g~~~~v~n~HL~s~~~~~~~~~~~~  154 (231)
                      ......+++++.................    .  .......+..+.....  .......+.++|+....          
T Consensus        74 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  143 (267)
T 3g6s_A           74 TAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXGWDAVCVRIATWAKFKDKATGKIFXAVNTHFDHVG----------  143 (267)
T ss_dssp             SSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC----------
T ss_pred             CCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCC----------
T ss_conf             7762479999357412674103742688653443345766433799999872699968999962266557----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             4578875489999999997404887899991368884622
Q gi|254780797|r  155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS  194 (231)
Q Consensus       155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~  194 (231)
                        ...+..+........ .....+.|++++||||......
T Consensus       144 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~gd~n~~~~~~  180 (267)
T 3g6s_A          144 --EEARRQSALLIIRKI-KEIVGERPAVVTGDFNVTDASD  180 (267)
T ss_dssp             --HHHHHHHHHHHHHHH-HHHTTTSCEEEEEECSSCTTSH
T ss_pred             --HHHHHHHHHHHHHHH-HHHCCCCCEEEECCCCCCCCCH
T ss_conf             --899999999999999-8624689969847778898748


No 5  
>>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} (X:)
Probab=99.73  E-value=3.4e-18  Score=115.11  Aligned_cols=162  Identities=10%  Similarity=0.042  Sum_probs=90.3

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--EECCCCH-------HHHHHH-HCCCCCEEE
Q ss_conf             489988731007677755666766668799999999999751898999--9727998-------899987-262322167
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVC--LQEIGSY-------EAIKRV-FPNDKWDIL   75 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~--LQEv~~~-------~~~~~~-~~~~~~~~~   75 (231)
                      +|+|+||||+....+..              +..+...+...+|||+|  +||+...       ...... ........+
T Consensus         8 ~i~i~TwNv~g~~~~~~--------------l~~~~~~~~~~~~Di~~i~lqev~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (282)
T 2imq_X            8 SVHTVSWNSGHERAPTN--------------LEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGY   73 (282)
T ss_dssp             EEEEEEEEEETCCCCSC--------------CHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEEECCCCCCCCCC--------------HHHHHCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             79999788899708708--------------8988574667897989997373585635453459999999997466764


Q ss_pred             EEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHH
Q ss_conf             74035787650356886146410100001221467565544575049999984997899999751168888754300254
Q gi|254780797|r   76 YSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYIS  155 (231)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~  155 (231)
                      .........+....++++........  ...............++++.+++..+|..++++|+||+++......      
T Consensus        74 ~~~~~~~~~g~~~~i~~k~~~~~~~~--~v~~~~~~~~~~~~~kg~v~~~~~~~~~~i~~in~Hl~a~~~~~~~------  145 (282)
T 2imq_X           74 TKLKNTITETMGLTVYCLEKHLDQNT--LKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTN------  145 (282)
T ss_dssp             EEEEEEECSSEEEEEEEEGGGCCTTT--CCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTS------
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCEE--EEEEEEEEEEEEECCCCCEEEEEEECCEEEEEECCCCCHHHHHHHH------
T ss_conf             27889971276789996431025426--7567678986677189977788876667776440332224678888------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             578875489999999997404887899991368884622
Q gi|254780797|r  156 SCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS  194 (231)
Q Consensus       156 ~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~  194 (231)
                          |..|+..+.+.+. ......++|++||||.++...
T Consensus       146 ----R~~~~~~i~~~~~-~~~~~~~vi~~GDfN~r~~~~  179 (282)
T 2imq_X          146 ----TKYAYDTRLDYSK-KDDPSDFLFWIGDLNVRVETN  179 (282)
T ss_dssp             ----SSSSCCGGGCTTS-SSSCCSEEEEEEECSCCBCSC
T ss_pred             ----HHHHHHHHHHCCC-CCCCCCEEECCCCCCCCCCCC
T ss_conf             ----8777654431034-467777057444357444357


No 6  
>>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} (A:)
Probab=99.71  E-value=1.5e-16  Score=106.34  Aligned_cols=153  Identities=18%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf             89988731007677755666766668799999999999751898999972799889998726232216774035787650
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHAM   86 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (231)
                      |||+||||++                ...+.+.++++|...+|||||||||..............+.+. ..........
T Consensus         1 lrv~t~Ni~~----------------~~~r~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   63 (256)
T 2jc4_A            1 MKITTWNVNS----------------LNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWH-CVWSGQKTYN   63 (256)
T ss_dssp             CEEEEEECSC----------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCE-EEEECCSSSC
T ss_pred             CEEEEEECCC----------------HHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCHHHHHHCCCC-EEEECCCCCC
T ss_conf             9899998298----------------9999999999998689988999932688100897786102452-0220122332


Q ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             35688614641010000122146756554457504999998499789999975116888875430025457887548999
Q gi|254780797|r   87 HTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATW  166 (231)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~  166 (231)
                      ..+++++.............       .....+..  ......+  +.+.+.+.......      .......+..|...
T Consensus        64 g~~i~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  126 (256)
T 2jc4_A           64 GVAIVSRSVPQDVHFGLPAL-------PDDPQRRV--IAATVSG--VRVINVYCVNGEAL------DSPKFKYKEQWFAA  126 (256)
T ss_dssp             CEEEEESSCCEEEEESCTTS-------TTCCSCCE--EEEEETT--EEEEEEECCCCCST------TSHHHHHHHHHHHH
T ss_pred             CCCCEECCCCCCCCCCCCCC-------CCCCHHCE--EEEECCC--CEEEEEEECCCCCC------CCHHHHHHHHHHHH
T ss_conf             22210002653011235764-------55611215--8874288--08988851268765------32123334455677


Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             999999740488789999136888462
Q gi|254780797|r  167 LKQWVDQKNNLNMPFIIAGDFNRKINH  193 (231)
Q Consensus       167 l~~~i~~~~~~~~~vii~GDFN~~~~~  193 (231)
                      +.+.++.....+.++|++||||.....
T Consensus       127 ~~~~~~~~~~~~~~~i~~gd~N~~~~~  153 (256)
T 2jc4_A          127 LTEFVRDEMTRHGKLVLLGDFNIAPAD  153 (256)
T ss_dssp             HHHHHHHHHTTCSSEEEEEECCCCCSG
T ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf             776666641147763100000124410


No 7  
>>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} (A:)
Probab=99.71  E-value=7.3e-16  Score=102.67  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf             89988731007677755666766668799999999999751898999972799889998726232216774035787650
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHAM   86 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (231)
                      .||+||||.++....       .......+++.|+++|+..+|||||||||+.............+.++ ..........
T Consensus         1 ~Rv~t~Nv~~~~~~~-------~~~~~~~r~~~i~~~I~~~~pDIi~LQEv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   72 (257)
T 3l1w_A            1 XKIATYNVRVDTEYD-------QDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTCLS-AEREGDGQGE   72 (257)
T ss_dssp             CEEEEEECCCCCGGG-------GGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHSSSEEEE-EESSSSSCSC
T ss_pred             CEEEEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEE-EECCCCCCCC
T ss_conf             989999678087886-------44589999999999998639999999868678988887500364114-4025776661


Q ss_pred             EEEEEEECCCCEEEEEECCCCCCCC-----CCCCCCCCEEEE--EEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf             3568861464101000012214675-----655445750499--999849978999997511688887543002545788
Q gi|254780797|r   87 HTAIVIRKGAIHLLQKSYLPMDTEG-----LDSKAGKRRAVE--ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYM  159 (231)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~--~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~  159 (231)
                      ..+.+++..................     ............  ......+..+.++++|+....            ...
T Consensus        73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  140 (257)
T 3l1w_A           73 GLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHIS------------AHA  140 (257)
T ss_dssp             EEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC------------HHH
T ss_pred             EEEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCC------------HHH
T ss_conf             56899716766345302110366743011245555552467889886378707999712566663------------156


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             75489999999997404887899991368884622
Q gi|254780797|r  160 LNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS  194 (231)
Q Consensus       160 ~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~  194 (231)
                      +..|...+...+.. .....+++++||||......
T Consensus       141 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  174 (257)
T 3l1w_A          141 RLAGXTVILEELHD-KIAQYPTLLXGDFNAESGEE  174 (257)
T ss_dssp             HHHHHHHHHHHTHH-HHHHSCEEEEEECCCCTTSH
T ss_pred             HHHHHHHHHHHHHH-HCCCCCEEECCCCCCCCCHH
T ss_conf             78999999999986-06689878568788996412


No 8  
>>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} (A:)
Probab=99.70  E-value=2.2e-16  Score=105.46  Aligned_cols=156  Identities=12%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECC
Q ss_conf             6654899887310076777556667666687999999999997518989999727998--89998726232216774035
Q gi|254780797|r    3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSN   80 (231)
Q Consensus         3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~   80 (231)
                      .+.+|||+||||+++               ...+.+.++++|+..+|||||||||...  .....+....++.+. ....
T Consensus        58 ~~~~lrv~T~Nv~~~---------------~~~~~~~i~~~i~~~~pDVi~lQEv~~~~~~~~~~~~~~~~~~~~-~~~~  121 (318)
T 1hd7_A           58 KPATLKICSWNVDGL---------------RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ-YWSA  121 (318)
T ss_dssp             CBCCEEEEEEECSSH---------------HHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEE-EEEC
T ss_pred             CCCCEEEEEEECCCH---------------HHHHHCCHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCCCE-EEEE
T ss_conf             998779999983898---------------985554799999767995899985646927689888960799734-9998


Q ss_pred             CCCCCCEEEEEE--ECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             787650356886--146410100001221467565544575049999984997899999751168888754300254578
Q gi|254780797|r   81 TDKHAMHTAIVI--RKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCY  158 (231)
Q Consensus        81 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~  158 (231)
                      ......+.++++  +.............       ........+...    ...+.++++|+......       .....
T Consensus       122 ~~~~~~~~~~~i~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~  183 (318)
T 1hd7_A          122 PSDKEGYSGVGLLSRQCPLKVSYGIGDE-------EHDQEGRVIVAE----FDSFVLVTAYVPNAGRG-------LVRLE  183 (318)
T ss_dssp             C-----CCCEEEEESSCCSEEEESCSCG-------GGSSSSCEEEEE----CSSCEEEEEECCCCCGG-------GTTHH
T ss_pred             ECCCCCCCCEEEEEECCCCCCCCCCCCC-------CCCHHHEEEEEE----ECCEEEEEEECCCCCCC-------CHHHH
T ss_conf             6687675561379712510122221345-------545002158999----58879999957776676-------17889


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             87548999999999740488789999136888462
Q gi|254780797|r  159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH  193 (231)
Q Consensus       159 ~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~  193 (231)
                      .+..+.+.+.+++... ....++|++||||.....
T Consensus       184 ~~~~~~~~l~~~~~~~-~~~~~~i~~GD~N~~~~~  217 (318)
T 1hd7_A          184 YRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEE  217 (318)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHSCEEEEEECSCCCSG
T ss_pred             HHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCH
T ss_conf             9999888999998886-227753750663446516


No 9  
>>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A (A:)
Probab=99.67  E-value=1.1e-15  Score=101.68  Aligned_cols=156  Identities=13%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEE-EC
Q ss_conf             665489988731007677755666766668799999999999751898999972799889--998726232216774-03
Q gi|254780797|r    3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYS-GS   79 (231)
Q Consensus         3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~-~~   79 (231)
                      ..++|||+||||+++               ...+.+.++++|+..+||||||||+.....  ...+.....+.+.+. ..
T Consensus        25 ~~~~lkV~T~Nv~~~---------------~~~~~~~~~~~i~~~~pDIi~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (285)
T 2o3h_A           25 KPATLKIASWNVDGL---------------RAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP   89 (285)
T ss_dssp             CBCCEEEEEEECSSH---------------HHHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB
T ss_pred             CCCCEEEEEEEECCH---------------HHHHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEE
T ss_conf             988679999981787---------------77223468999974899899997203682338886761578744666532


Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE-EECCEEEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             57876503568861464101000012214675655445750499999-84997899999751168888754300254578
Q gi|254780797|r   80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILF-EVDGRKIWLLDIHLKSFCFLDSIEDSYISSCY  158 (231)
Q Consensus        80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~  158 (231)
                      .........+++++.............       ........+.... ......+.+.++|+..            ....
T Consensus        90 ~~~~~~~g~~i~sr~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~  150 (285)
T 2o3h_A           90 SDKEGYSGVGLLSRQCPLKVSYGIGDE-------EHDQEGRVIVAEFDSFVLVTAYVPNAGRGL------------VRLE  150 (285)
T ss_dssp             C--CCSCCEEEEESSCCSEEEESCSCG-------GGSSBCCEEEEECSSCEEEEEECCCCCGGG------------TTHH
T ss_pred             CCCCCCCCCCEEECCCCCEEEEEECCC-------CCCCCCEEEEEEEECCEEEEEECCCCCCCC------------HHHH
T ss_conf             012555431013046870368740125-------545422389998504240014225578654------------0123


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             87548999999999740488789999136888462
Q gi|254780797|r  159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH  193 (231)
Q Consensus       159 ~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~  193 (231)
                      .+..+.+.+.+.+.+. ....++|++||||.....
T Consensus       151 ~~~~~~~~~~~~~~~~-~~~~~~i~~gd~~~~~~~  184 (285)
T 2o3h_A          151 YRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEE  184 (285)
T ss_dssp             HHHHHHHHHHHHHHHH-HTTSCEEEEEECSCCCSG
T ss_pred             HHHHEEECCCCCCCCC-CCCCEEEECCCCCCCCCH
T ss_conf             3200110241121112-455337740445457313


No 10 
>>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:)
Probab=99.65  E-value=5.4e-15  Score=98.02  Aligned_cols=150  Identities=15%  Similarity=0.140  Sum_probs=85.6

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHCCCCCEEEEEECCCCC
Q ss_conf             489988731007677755666766668799999999999751898999972799889--998726232216774035787
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA--IKRVFPNDKWDILYSGSNTDK   83 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~--~~~~~~~~~~~~~~~~~~~~~   83 (231)
                      +|||+||||+++                ..+.+.+.+.|.+.+|||||||||.....  .........|.+...   ...
T Consensus         1 tlrv~t~Nv~~~----------------~~r~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~~~~~~~~~---~~~   61 (257)
T 2voa_A            1 MLKIATFNVNSI----------------RSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFS---GSK   61 (257)
T ss_dssp             CEEEEEEECSCG----------------GGTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEE---EET
T ss_pred             CEEEEEEEECCH----------------HHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCEEEEC---CCC
T ss_conf             939999980989----------------9989999999986799889998261893668886761246247860---356


Q ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r   84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ  163 (231)
Q Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q  163 (231)
                      .....+++++.+...........       .....+.   ......+........|..+..        .......+..+
T Consensus        62 ~~~g~~i~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  123 (257)
T 2voa_A           62 GRNGVAIASLEEPEDVSFGLDSE-------PKDEDRL---IRAKIAGIDVINTYVPQGFKI--------DSEKYQYKLQW  123 (257)
T ss_dssp             TEEEEEEEESSCCEEEEESCSSS-------SCCGGGE---EEEEETTEEEEEEECCCCSCT--------TSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCEEEEECCCCC-------CCCCCEE---EEEEECCEEEEEEEEECCCCC--------CHHHHHHHHHH
T ss_conf             66652122157750378413333-------3556606---886307747999986148878--------64777888888


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf             99999999974048878999913688846
Q gi|254780797|r  164 ATWLKQWVDQKNNLNMPFIIAGDFNRKIN  192 (231)
Q Consensus       164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~~  192 (231)
                      ...+...+........++|++||||....
T Consensus       124 ~~~~~~~~~~~~~~~~~~i~~gd~n~~~~  152 (257)
T 2voa_A          124 LERLYHYLQKTVDFRSFAVWCGDMNVAPE  152 (257)
T ss_dssp             HHHHHHHHHHHCCTTSCEEEEEECSCCCS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             89898888764200122101444233640


No 11 
>>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} (A:18-321)
Probab=99.60  E-value=6.1e-15  Score=97.77  Aligned_cols=163  Identities=17%  Similarity=0.131  Sum_probs=85.7

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCH----------HHHH-------HH
Q ss_conf             48998873100767775566676666879999999999975189899--99727998----------8999-------87
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIV--CLQEIGSY----------EAIK-------RV   66 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi--~LQEv~~~----------~~~~-------~~   66 (231)
                      +|+|+||||+...++...              ......+...+|||+  ++||+...          ....       ..
T Consensus         9 ~i~i~TwNvng~~~~~~l--------------~~~~~~~~~~~~Di~vl~~Qe~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (304)
T 1i9z_A            9 KIFVASYNLNGCSATTKL--------------ENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRL   74 (304)
T ss_dssp             EEEEEEEECTTCCCCSCC--------------HHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCHHH--------------HHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             999986236688886778--------------987487888877679986244444223443057885327899999987


Q ss_pred             H--CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCC
Q ss_conf             2--62322167740357876503568861464101000012214675655445750499999849978999997511688
Q gi|254780797|r   67 F--PNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFC  144 (231)
Q Consensus        67 ~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~  144 (231)
                      +  ....+..+.........+....++++.........................++.+.+.+...+..++++|+||+++.
T Consensus        75 l~~~~~~~~~y~~~~~~~~~~~~i~vf~r~~~~~~i~~~~~~~v~~g~~~~~~~kG~v~~~~~~~~~~i~~i~~hlp~~~  154 (304)
T 1i9z_A           75 LNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGY  154 (304)
T ss_dssp             HHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred             HHCCCCCCCCEEEEEEEEEEEEEEEEEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECHHCCC
T ss_conf             64024678753798641271289999982553323442033246534553114676369999988947999986041166


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCEEEEEECCCCCC
Q ss_conf             88754300254578875489999999----9974048878999913688846
Q gi|254780797|r  145 FLDSIEDSYISSCYMLNLQATWLKQW----VDQKNNLNMPFIIAGDFNRKIN  192 (231)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~q~~~l~~~----i~~~~~~~~~vii~GDFN~~~~  192 (231)
                      ....          .|..+...+.+.    .........++|++||||-++.
T Consensus       155 ~~~~----------~r~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDlN~ri~  196 (304)
T 1i9z_A          155 TNYD----------ERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRIS  196 (304)
T ss_dssp             SCHH----------HHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBS
T ss_pred             HHHH----------HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEC
T ss_conf             1554----------54253999999741258865334756999535330330


No 12 
>>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} (A:)
Probab=99.57  E-value=6.8e-14  Score=92.17  Aligned_cols=132  Identities=17%  Similarity=0.136  Sum_probs=76.9

Q ss_pred             CCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECC
Q ss_conf             98665489988731007677755666766668799999999999751898999972799889998726232216774035
Q gi|254780797|r    1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSN   80 (231)
Q Consensus         1 ~~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~   80 (231)
                      |.+..+|||+||||+.+                .++.+.+.+.+++.+|||+||||......            . ..  
T Consensus         2 ~~~~~~mki~swNVnGl----------------ra~~~~l~~~l~~~~~DvicLQEtk~~~~------------~-~~--   50 (240)
T 2ei9_A            2 MDIRPRLRIGQINLGGA----------------EDATRELPSIARDLGLDIVLVQEQYSMVG------------F-LA--   50 (240)
T ss_dssp             ----CEEEEEEEECTTC----------------HHHHHTHHHHHHHHTCSEEEEESCCTTSS------------S-EE--
T ss_pred             CCCCCCCEEEEEECCCC----------------HHHHHHHHHHHHHHCCCEEEEECCCCCCC------------C-CC--
T ss_conf             87767228987706883----------------78999999999976999999944463798------------5-80--


Q ss_pred             CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             78765035688614641010000122146756554457504999998499789999975116888875430025457887
Q gi|254780797|r   81 TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYML  160 (231)
Q Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~  160 (231)
                      .......++++++..+.......  .      ..     ......+..+...+.|++++.+.+....             
T Consensus        51 ~~~~~~Gv~~~~~~~~~~~~~~~--~------~~-----~~~~r~i~~~~~~~~l~~vY~P~~~~~~-------------  104 (240)
T 2ei9_A           51 QCGAHPKAGVYIRNRVLPCAVLH--H------LS-----STHITVVHIGGWDLYMVSAYFQYSDPID-------------  104 (240)
T ss_dssp             CCSSSCSEEEEESSTTSCEEECG--G------GC-----CSSEEEEEETTTTEEEEEEECCTTSCSH-------------
T ss_pred             CCCCCCCEEEEEECCCCCEEEEE--C------CC-----CCCEEEEECCCCEEEEEEEECCCCCCHH-------------
T ss_conf             35688828999978887345532--3------78-----5558999728945999997068998632-------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf             54899999999974048878999913688846
Q gi|254780797|r  161 NLQATWLKQWVDQKNNLNMPFIIAGDFNRKIN  192 (231)
Q Consensus       161 ~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~  192 (231)
                      ......+..+   ....+.|+|+|||||.-+.
T Consensus       105 ~~~~~~~~~~---~~~~~~~~ii~GDfNva~~  133 (240)
T 2ei9_A          105 PYLHRLGNIL---DRLRGARVVICADTNAHSP  133 (240)
T ss_dssp             HHHHHHHHHH---HHTTTSCEEEEEECCCCCG
T ss_pred             HHHHHHHHHH---HCCCCCCEEEECCCCCCCH
T ss_conf             8999999887---4267887798120023570


No 13 
>>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} (A:)
Probab=99.55  E-value=1.8e-13  Score=89.95  Aligned_cols=152  Identities=14%  Similarity=0.061  Sum_probs=81.2

Q ss_pred             EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH--HHHCCCCCEEEEEECCCCC
Q ss_conf             48998873100767775566676666879999999999975189899997279988999--8726232216774035787
Q gi|254780797|r    6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK--RVFPNDKWDILYSGSNTDK   83 (231)
Q Consensus         6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~--~~~~~~~~~~~~~~~~~~~   83 (231)
                      +|||+||||+++               ...+.+.+++.|++.+|||||||||.......  ..+.. .+.++........
T Consensus         1 tlrv~t~Ni~~~---------------~~~~~~~i~~~i~~~~pDIi~lQEv~~~~~~~~~~~~~~-~~~~~~~~~~~~~   64 (259)
T 2jc5_A            1 MLKIISANVNGI---------------RSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNP-HGMHGHWHCAEKR   64 (259)
T ss_dssp             CEEEEEEECSSH---------------HHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSG-GGCEEEEECCSST
T ss_pred             CEEEEEEECCCH---------------HHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHHCC-CCCCCEEECCCCC
T ss_conf             929999974378---------------887661299999747999999983326810079878512-0122102100256


Q ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r   84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ  163 (231)
Q Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q  163 (231)
                      .....+++++.+............       .......  +.....+  +.+.+.+......       .......+..+
T Consensus        65 ~~~g~~i~sr~p~~~~~~~~~~~~-------~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~  126 (259)
T 2jc5_A           65 GYSGVAVYSKRKPDNVQIGMGIEE-------FDREGRF--VRCDFGR--LSVISLYLPSGSS-------AEERQQVKYRF  126 (259)
T ss_dssp             TCCCEEEEESSCCSEEEESCSCHH-------HHTTCCE--EEEEETT--EEEEEEECCCCTT-------CHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCEEEEECCCCCC-------CCCCCEE--EEEEECC--EEEEEEEEEECCC-------CCCCHHHHHHH
T ss_conf             741321023678577873378764-------3200002--0068798--9998663100331-------11213566655


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             9999999997404887899991368884
Q gi|254780797|r  164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      ...+..........+.+.+++||||...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (259)
T 2jc5_A          127 LDAFYPMLEAMKNEGRDIVVCGDWNIAH  154 (259)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEEECCCCC
T ss_pred             HHHHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf             4432110211233444311100001242


No 14 
>>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} (A:)
Probab=99.52  E-value=2.5e-12  Score=83.87  Aligned_cols=147  Identities=18%  Similarity=0.210  Sum_probs=88.2

Q ss_pred             CCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             66548998873100767775566676666879999999999975189899997279988999872623221677403578
Q gi|254780797|r    3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTD   82 (231)
Q Consensus         3 ~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~   82 (231)
                      -+.+|||+||||+.+              +...+...|++.|.+.+||||||||+..............+.+.+.. ...
T Consensus         4 ~~~~lrV~T~Nv~g~--------------~~~~~~~~i~~~i~~~~pDIi~lQE~~~~~~~~~~~~~~~~~~~~~~-~~~   68 (238)
T 1vyb_A            4 SNSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA-NGK   68 (238)
T ss_dssp             CCCCEEEEEEECSCC--------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEE-CCS
T ss_pred             CCCCCEEEEEECCCC--------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCC-CCC
T ss_conf             989869999993886--------------22454789999998769909999846136555403332144430000-002


Q ss_pred             CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             76503568861464101000012214675655445750499999849978999997511688887543002545788754
Q gi|254780797|r   83 KHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNL  162 (231)
Q Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~  162 (231)
                      ......+++++.+...........          .........+...+..+.++++|+.....                 
T Consensus        69 ~~~~g~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  121 (238)
T 1vyb_A           69 QKKAGVAILVSDKTDFKPTKIKRD----------KEGHYIMVKGSIQQEELTILNIYAPNTGA-----------------  121 (238)
T ss_dssp             SSSCCEEEEECTTCCCEEEEEEEC----------TTSSEEEEEEEETTEEEEEEEEECCSSSH-----------------
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCC----------CCCCEEEEEEEECCCCEEEEEECCCCCCC-----------------
T ss_conf             232342269841443324564211----------14521356886236866887522010220-----------------


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             89999999997404887899991368884
Q gi|254780797|r  163 QATWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       163 q~~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      +................+.+..||+|...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (238)
T 1vyb_A          122 PRFIKQVLSDLQRDLDSHTLIMGDFNTPL  150 (238)
T ss_dssp             HHHHHHHHHHTTTTCCTTEEEEEECSSCS
T ss_pred             HHHHHHHHHHHHCCCHHHEEEHHHHCCCC
T ss_conf             78887777655202401114074533566


No 15 
>>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} (A:)
Probab=99.45  E-value=1.9e-11  Score=79.10  Aligned_cols=146  Identities=16%  Similarity=0.056  Sum_probs=83.6

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf             65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK   83 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (231)
                      +.+|||+||||+++                ..+.+.|++.|++.+||||||||+...........  ...+.+.......
T Consensus        17 ~~~lrv~t~Ni~~~----------------~~~~~~l~~~i~~~~pDIv~lQE~~~~~~~~~~~~--~~~~~~~~~~~~~   78 (245)
T 1wdu_A           17 GPPYRVLQANLQRK----------------KLATAELAIEAATRKAAIALIQEPYVGGAKSMKGF--RGVRVFQSTAQGD   78 (245)
T ss_dssp             -CCEEEEEEECTTC----------------HHHHHHHHHHHHHHTCSEEEEESCCC------CCC--SSCEEEECCCCTT
T ss_pred             CCCEEEEEECCCCC----------------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHC--CCCEEEEEECCCC
T ss_conf             99879998847987----------------66899999999861998999987887776520002--5611367645689


Q ss_pred             CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r   84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ  163 (231)
Q Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q  163 (231)
                      .+...++++..............           ......+.....+..+.++++|.+.....             +...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  134 (245)
T 1wdu_A           79 GTVKAAIAVFDHDLDVIQYPQLT-----------TNNIVVVGIRTRAWEITLVSYYFEPDKPI-------------ESYL  134 (245)
T ss_dssp             CCCCEEEEECCSSCEEEECTTTC-----------CSSEEEEEEECSSCEEEEEEEECCTTSCS-------------HHHH
T ss_pred             CCCEEEEEEECCCCCEEEECCCC-----------CCCEEEEEEEECCCCEEEEEEECCCCCCH-------------HHHH
T ss_conf             98679999971564135514888-----------79859999990892089999960874431-------------8999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             9999999997404887899991368884622
Q gi|254780797|r  164 ATWLKQWVDQKNNLNMPFIIAGDFNRKINHS  194 (231)
Q Consensus       164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~  194 (231)
                      .. .....  ......+.+++||||......
T Consensus       135 ~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~  162 (245)
T 1wdu_A          135 EQ-IKRVE--RKMGPKRLIFGGDANAKSTWW  162 (245)
T ss_dssp             HH-HHHHH--HTTCSSSEEEEEECCCCCGGG
T ss_pred             HH-HHHHH--HHCCCCEEEECCCCCCCCHHH
T ss_conf             99-99998--752797399805467477111


No 16 
>>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467)
Probab=99.28  E-value=1.5e-11  Score=79.72  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHC--CCCCEEEEEEC
Q ss_conf             6548998873100767775566676666879999999999975189899997279988--9998726--23221677403
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE--AIKRVFP--NDKWDILYSGS   79 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~--~~~~~~~--~~~~~~~~~~~   79 (231)
                      +.+|||+||||+.+.            ...+.+.+.++++|++.+||||||||+....  .......  ..+|.+++...
T Consensus        13 ~~~lkIlT~NV~gl~------------~~~k~~~~~l~~~i~~~dpDVIcLQEv~~~~~~~~~~~~~~~~~~y~~~~~~~   80 (126)
T 2j63_A           13 SRMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC   80 (126)
T ss_dssp             TTEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC
T ss_pred             CCEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECC
T ss_conf             335799999015677------------76432548999999854998799987652621169777864227862687334


Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCCC
Q ss_conf             5787650356886146410100001221467
Q gi|254780797|r   80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTE  110 (231)
Q Consensus        80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  110 (231)
                      ..+.+....++++++++.......-++....
T Consensus        81 ~~~~g~~GvaIlSR~pi~~~~~~~~~~~~~~  111 (126)
T 2j63_A           81 AFKRGYSGTRTYMKNSTTASYVVDCFPMPTV  111 (126)
T ss_dssp             SSSTTSCCEEEEEECCCCGGGEEEEEECTTC
T ss_pred             CCCCCCCCEEEEECCCCCHHHCCEEEECCCC
T ss_conf             5654546679998467647121078875899


No 17 
>>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:1-87,B:228-260)
Probab=98.86  E-value=5.9e-09  Score=65.87  Aligned_cols=78  Identities=17%  Similarity=0.289  Sum_probs=53.0

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHH------CCCCCEEEEEE
Q ss_conf             899887310076777556667666687999999999997518989999727998--8999872------62322167740
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVF------PNDKWDILYSG   78 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~------~~~~~~~~~~~   78 (231)
                      |||+||||++|+.         ...+.++....|++.|.  ++||++||||.+.  ..+..++      ....|.+..+.
T Consensus         1 lrVaSfNv~nfg~---------~k~~~~~~~~~ia~ii~--~~DIigLqEV~~~~~~ai~~Lv~~Ln~~~g~~y~yv~s~   69 (120)
T 2a40_B            1 LKIAAFNIRTFGE---------TKMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE   69 (120)
T ss_dssp             CEEEEEEEEEESH---------HHHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred             CEEEEEECCCCCC---------CCCCHHHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             9899995883377---------86664999999999738--999899980337774089999987530367750489504


Q ss_pred             CC-CCCCCCEEEEEEECC
Q ss_conf             35-787650356886146
Q gi|254780797|r   79 SN-TDKHAMHTAIVIRKG   95 (231)
Q Consensus        79 ~~-~~~~~~~~g~~~~~~   95 (231)
                      +. .+...++.+++++.+
T Consensus        70 ~~g~~~~~E~~aiiYr~d   87 (120)
T 2a40_B           70 PLGRNSYKERYLFLFRPN   87 (120)
T ss_dssp             CBCSSSCCBEEEEEECTT
T ss_pred             CCCCCCCCEEEEEEEECC
T ss_conf             677776652568875034


No 18 
>>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} (A:)
Probab=98.76  E-value=7.1e-08  Score=60.13  Aligned_cols=152  Identities=20%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHC-CCCEEEEECCCCHHH----HHHHHCCC---CCEEE
Q ss_conf             5489988731007677755666766668799999-999999751-898999972799889----99872623---22167
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYA-LLQKYAEQL-DADIVCLQEIGSYEA----IKRVFPND---KWDIL   75 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~-~~DVi~LQEv~~~~~----~~~~~~~~---~~~~~   75 (231)
                      +..||+|||++.-+            ..++.+.. .+..+|... ..||+++||...--.    ........   -.+|.
T Consensus        14 ~d~~v~TWNlQGss------------a~tesKWn~~Vrqli~g~n~~dIl~iQEAG~lP~sA~~t~r~~~~~g~pv~Ey~   81 (262)
T 2f1n_A           14 TDFRVATWNLQGAS------------ATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELI   81 (262)
T ss_dssp             GGCCEEEEEEEECT------------TSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEE
T ss_pred             CCEEEEEEECCCCC------------CCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             87299998208776------------765454079999999738999999998278533531567654321455300000


Q ss_pred             -------------EEECCCCCCCCEE--EEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEE
Q ss_conf             -------------7403578765035--6886146410100001221467565544575049999984997899999751
Q gi|254780797|r   76 -------------YSGSNTDKHAMHT--AIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHL  140 (231)
Q Consensus        76 -------------~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL  140 (231)
                                   .+....+...-+.  ++.++........         ........|+++.+.+..    -.++++|-
T Consensus        82 Wnlgt~sRp~~vyIYys~vD~ganRvNlAIVSr~~ADev~v---------l~p~~~~sRPiiGIRign----d~FFtiHA  148 (262)
T 2f1n_A           82 WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFV---------LSPVRQGGRPLLGIRIGN----DAFFTAHA  148 (262)
T ss_dssp             EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEE---------ECCSSTTCCCEEEEEETT----EEEEEEEC
T ss_pred             HCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEE---------CCCCCCCCCCEEEEEECC----EEEEEEEE
T ss_conf             02221358734799974256433042229997025545324---------278655565206999899----69999982


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEEEEEECCCCCCC
Q ss_conf             16888875430025457887548999999999740---488789999136888462
Q gi|254780797|r  141 KSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN---NLNMPFIIAGDFNRKINH  193 (231)
Q Consensus       141 ~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~---~~~~~vii~GDFN~~~~~  193 (231)
                      .|+...+..            .-+..+..+.....   .+..+.+++||||..+..
T Consensus       149 la~GG~DA~------------aiV~~V~~~f~~~~~p~~p~~~W~I~GDFNR~P~~  192 (262)
T 2f1n_A          149 IAMRNNDAP------------ALVEEVYNFFRDSRDPVHQALNWMILGDFNREPAD  192 (262)
T ss_dssp             CSSSSCSHH------------HHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHH
T ss_pred             CCCCCCCHH------------HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf             599973279------------99999999999988754578987997601258623


No 19 
>>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:88-227)
Probab=98.18  E-value=2e-05  Score=47.05  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=42.7

Q ss_pred             CCCCCCCEEEEEEEEECC---EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCEEEEEE
Q ss_conf             554457504999998499---7899999751168888754300254578875489999---9999974048878999913
Q gi|254780797|r  113 DSKAGKRRAVEILFEVDG---RKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWL---KQWVDQKNNLNMPFIIAGD  186 (231)
Q Consensus       113 ~~~~~~r~~~~~~~~~~g---~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l---~~~i~~~~~~~~~vii~GD  186 (231)
                      ....+.|.+..+.|..++   +.++++++|....               .+..++.+|   .+.+.++. ...++|++||
T Consensus        18 ~~d~F~ReP~~v~F~~~~~~~~df~lv~~Ht~p~---------------~~~~E~~~L~dV~~~v~~~~-~~~dviilGD   81 (140)
T 2a40_B           18 GNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS---------------DAVAEINSLYDVYLDVQQKW-HLNDVMLMGD   81 (140)
T ss_dssp             HHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG---------------GHHHHHHHHHHHHHHHHHHH-CCCCEEEEEE
T ss_pred             CCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCC---------------CHHHHHHHHHHHHHHHHHHC-CCCCEEEECC
T ss_conf             4422220103688996057872899850233332---------------14899999899999887504-6787798341


Q ss_pred             CCCCCCC
Q ss_conf             6888462
Q gi|254780797|r  187 FNRKINH  193 (231)
Q Consensus       187 FN~~~~~  193 (231)
                      ||...++
T Consensus        82 FNa~c~y   88 (140)
T 2a40_B           82 FNADCSY   88 (140)
T ss_dssp             CCCSTTT
T ss_pred             CCCCCCC
T ss_conf             2567774


No 20 
>>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:1-134,A:233-439)
Probab=97.98  E-value=9.6e-05  Score=43.45  Aligned_cols=60  Identities=17%  Similarity=0.033  Sum_probs=35.0

Q ss_pred             EEEEEEEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHH-----------HHHHHCCCCCCEEEEEECCCC
Q ss_conf             7899999751168888754300254578-87548999999-----------999740488789999136888
Q gi|254780797|r  131 RKIWLLDIHLKSFCFLDSIEDSYISSCY-MLNLQATWLKQ-----------WVDQKNNLNMPFIIAGDFNRK  190 (231)
Q Consensus       131 ~~~~v~n~HL~s~~~~~~~~~~~~~~~~-~~~~q~~~l~~-----------~i~~~~~~~~~vii~GDFN~~  190 (231)
                      ..|+|+|++++.+.........++..+. .....++.+.+           .+....+.+.++|+|||||.-
T Consensus       190 ~~i~IiNvYvPnGg~~~~r~~~~k~~w~~~l~~~l~~L~~~~~~f~~~l~~~~~~l~~~gkpVIl~GDfNVA  261 (341)
T 2j63_A          190 SRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVA  261 (341)
T ss_dssp             CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCC
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             878998643566656530356778999999999999998766421012103444440467755871560245


No 21 
>>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} (B:1-105,B:229-261)
Probab=95.41  E-value=0.02  Score=31.15  Aligned_cols=43  Identities=26%  Similarity=0.498  Sum_probs=26.0

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCC-CCEEEEECCCC
Q ss_conf             548998873100767775566676666879999-99999997518-98999972799
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDY-ALLQKYAEQLD-ADIVCLQEIGS   59 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~-~DVi~LQEv~~   59 (231)
                      +..+|+|||++.-+            ..++... -.+..+|...+ .||+++||...
T Consensus         3 ~D~~v~TWNlQGSS------------A~TESKWn~~Vrqli~G~n~~dIlmiQEAGs   47 (138)
T 1sr4_B            3 SDFKVATWNLQGSS------------AVNESKWNINVRQLLSGEQGADILMVQEAGS   47 (138)
T ss_dssp             GGSCEEEEECCCCS------------SSSHHHHHHHHHHHHCSTTCCSEEEEESCCS
T ss_pred             CCCEEEEEECCCCC------------CCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             78889999789587------------8754320699999998568989999983676


No 22 
>>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} (B:106-228)
Probab=94.02  E-value=0.11  Score=27.08  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             CCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCEEEEEECCCCC
Q ss_conf             4575049999984997899999751168888754300254578875489999999997----404887899991368884
Q gi|254780797|r  116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQ----KNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       116 ~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~----~~~~~~~vii~GDFN~~~  191 (231)
                      ...|+++.+++..    -.++++|.-+....+...            -+..+..+...    -..+..+++++||||..+
T Consensus        14 ~~sRPiiGIRign----d~FFsiHALa~GG~DA~a------------iv~~v~~~f~~~~~~~~~~~~~W~I~GDFNR~P   77 (123)
T 1sr4_B           14 LQSRPAVGIRIGT----DVFFTVHALATGGSDAVS------------LIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAP   77 (123)
T ss_dssp             SCCCCEEEEEETT----EEEEEEECCTTTTTTHHH------------HHHHHHHHHHC---CGGGGGCEEEEEEECSSCH
T ss_pred             CCCCEEEEEEEEC----CCCCEEEEECCCCCCHHH------------HHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCC
T ss_conf             5410379999724----663038982388851788------------999999999998777505789789710026544


Q ss_pred             CC
Q ss_conf             62
Q gi|254780797|r  192 NH  193 (231)
Q Consensus       192 ~~  193 (231)
                      ..
T Consensus        78 ~~   79 (123)
T 1sr4_B           78 AN   79 (123)
T ss_dssp             HH
T ss_pred             CC
T ss_conf             62


No 23 
>>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} (A:1-224)
Probab=45.47  E-value=13  Score=16.11  Aligned_cols=10  Identities=10%  Similarity=0.019  Sum_probs=4.8

Q ss_pred             EEEEEECCCCC
Q ss_conf             99975116888
Q gi|254780797|r  135 LLDIHLKSFCF  145 (231)
Q Consensus       135 v~n~HL~s~~~  145 (231)
                      .+|+ |+-|+.
T Consensus       145 qynV-LPqGWK  154 (224)
T 1mu2_A          145 IYKV-LPQGWK  154 (224)
T ss_dssp             EESB-CCTTCT
T ss_pred             EEEE-ECCCCC
T ss_conf             9963-378667


No 24 
>>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP} (A:)
Probab=43.44  E-value=19  Score=15.28  Aligned_cols=46  Identities=15%  Similarity=0.141  Sum_probs=28.4

Q ss_pred             CCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHCCCCEEEEECCC
Q ss_conf             98665489988731007677755666766668799999---99999975189899997279
Q gi|254780797|r    1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYA---LLQKYAEQLDADIVCLQEIG   58 (231)
Q Consensus         1 ~~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~i~~~~~DVi~LQEv~   58 (231)
                      +.+.++|||+.-.+.-            .....+.+++   .+.+...+.++|+|++.|..
T Consensus        15 ~~~~~~~kva~~Q~~~------------~~~~~~~n~~~i~~~~~~a~~~~adlvvfPE~~   63 (283)
T 3hkx_A           15 VIRGSHMRIALMQHTA------------RPLDPQHNLDLIDDAAARASEQGAQLLLTPELF   63 (283)
T ss_dssp             CCTTEEEEEEEEEBCC------------CTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTG
T ss_pred             EEECCCCEEEEEECCC------------CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             5507987899998889------------889999999999999999998879799958775


No 25 
>>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} (A:1-117,A:290-322)
Probab=38.32  E-value=23  Score=14.83  Aligned_cols=24  Identities=4%  Similarity=-0.256  Sum_probs=18.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             879999999999975189899997
Q gi|254780797|r   32 REDNDYALLQKYAEQLDADIVCLQ   55 (231)
Q Consensus        32 ~~~~~~~~i~~~i~~~~~DVi~LQ   55 (231)
                      ...+.++.+.+.+...+||.|.+-
T Consensus        35 ~~~~~l~~l~~~i~~~~pD~Vi~~   58 (150)
T 2nxf_A           35 GSADLLRDAVLQWRRERVQCVVQL   58 (150)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             889999999999742799999999


No 26 
>>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ... (A:)
Probab=36.29  E-value=24  Score=14.70  Aligned_cols=18  Identities=0%  Similarity=-0.127  Sum_probs=10.0

Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             666879999999999975
Q gi|254780797|r   29 SVIREDNDYALLQKYAEQ   46 (231)
Q Consensus        29 ~~~~~~~~~~~i~~~i~~   46 (231)
                      ..+-+.+.++.|..+|.+
T Consensus        40 QyPL~~ek~~al~~~v~~   57 (255)
T 3fsi_A           40 QYPMSQEARLGIKPHIQR   57 (255)
T ss_dssp             CCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             867999999999999999


No 27 
>>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} (A:)
Probab=34.75  E-value=20  Score=15.10  Aligned_cols=15  Identities=20%  Similarity=0.231  Sum_probs=10.3

Q ss_pred             CCCCEEEEEECCCCC
Q ss_conf             887899991368884
Q gi|254780797|r  177 LNMPFIIAGDFNRKI  191 (231)
Q Consensus       177 ~~~~vii~GDFN~~~  191 (231)
                      ....|-|.||||.|-
T Consensus        20 ~a~~V~v~GsFn~W~   34 (96)
T 1z0n_A           20 GGKEVYLSGSFNNWS   34 (96)
T ss_dssp             CCSCEEEEEGGGTTC
T ss_pred             CCEEEEEEEEECCCC
T ss_conf             998999998807886


No 28 
>>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} (A:1-98,A:224-274)
Probab=33.30  E-value=28  Score=14.38  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=16.4

Q ss_pred             CCCHHHHHHHHHHHHHHC--CCCEEEEE
Q ss_conf             668799999999999751--89899997
Q gi|254780797|r   30 VIREDNDYALLQKYAEQL--DADIVCLQ   55 (231)
Q Consensus        30 ~~~~~~~~~~i~~~i~~~--~~DVi~LQ   55 (231)
                      .....+.++.+.+.+.+.  ++|+|.+-
T Consensus        21 ~~~~~~~l~~ii~~i~a~~~~~D~Vvi~   48 (149)
T 3d03_A           21 FIDVNAANADVVSQLNALRERPDAVVVS   48 (149)
T ss_dssp             TBCHHHHHHHHHHHHHTCSSCCSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             7689999999999998358999999988


No 29 
>>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} (A:)
Probab=30.73  E-value=31  Score=14.14  Aligned_cols=45  Identities=11%  Similarity=0.100  Sum_probs=27.0

Q ss_pred             CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHHHCCCCEEEEECCC
Q ss_conf             654899887310076777556667666687999999999---9975189899997279
Q gi|254780797|r    4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQK---YAEQLDADIVCLQEIG   58 (231)
Q Consensus         4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~i~~~~~DVi~LQEv~   58 (231)
                      |++|||+.-...-          +......+.+++.+.+   .-.+.++|+|++-|..
T Consensus         1 s~~~kIa~~Q~~~----------~~~~~d~~~n~~~i~~~~~~A~~~gadlvvfPE~~   48 (303)
T 1uf5_A            1 TRQMILAVGQQGP----------IARAETREQVVVRLLDMLTKAASRGANFIVFPELA   48 (303)
T ss_dssp             CCEEEEEEEEBCC----------CCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTT
T ss_pred             CCEEEEEEECCCC----------CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             9479999992678----------68985899999999999999998889399908886


No 30 
>>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:107-201)
Probab=27.47  E-value=35  Score=13.82  Aligned_cols=24  Identities=13%  Similarity=0.093  Sum_probs=16.5

Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             999999740488789999136888
Q gi|254780797|r  167 LKQWVDQKNNLNMPFIIAGDFNRK  190 (231)
Q Consensus       167 l~~~i~~~~~~~~~vii~GDFN~~  190 (231)
                      +.+.+++..+.|..+|+.||=|++
T Consensus         6 i~~~v~~~~~~Gy~iiiiGd~~HP   29 (95)
T 3ke8_A            6 VHMEVARASRRGEESILIGHAGHP   29 (95)
T ss_dssp             HHHHHHHHHHTTCEEEEESCTTCH
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCH
T ss_conf             999999987189759999078878


No 31 
>>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} (A:)
Probab=23.96  E-value=41  Score=13.45  Aligned_cols=29  Identities=17%  Similarity=0.053  Sum_probs=22.3

Q ss_pred             CCCHHHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf             66879999999999975--189899997279
Q gi|254780797|r   30 VIREDNDYALLQKYAEQ--LDADIVCLQEIG   58 (231)
Q Consensus        30 ~~~~~~~~~~i~~~i~~--~~~DVi~LQEv~   58 (231)
                      ....+.+++.+.+.|.+  .++|++++-|..
T Consensus        15 ~~d~~~n~~~~~~~i~~A~~gadlivfPE~~   45 (266)
T 2e11_A           15 WHDPAGNRDYYGALLEPLAGQSDLVILPETF   45 (266)
T ss_dssp             TTCHHHHHHHHHHHHGGGTTTCSEEECCTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             7699999999999999973899899948864


No 32 
>>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus} (A:97-193)
Probab=20.88  E-value=48  Score=13.11  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=13.3

Q ss_pred             HHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             99999740488789999136888
Q gi|254780797|r  168 KQWVDQKNNLNMPFIIAGDFNRK  190 (231)
Q Consensus       168 ~~~i~~~~~~~~~vii~GDFN~~  190 (231)
                      .+.+++..+.|..+|+.||=|++
T Consensus         7 ~~~v~~~~~~Gy~iiiiG~~~HP   29 (97)
T 3dnf_A            7 HEAVCQLTREGYFVVLVGEKNHP   29 (97)
T ss_dssp             HHHHHHHHHTTCEEEEESCTTCH
T ss_pred             HHHHHHHHHCCCEEEEECCCCCH
T ss_conf             99999998579889998169980


No 33 
>>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:585-763)
Probab=20.64  E-value=49  Score=13.08  Aligned_cols=21  Identities=29%  Similarity=0.229  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHCCCCEEEEECC
Q ss_conf             999999997518989999727
Q gi|254780797|r   37 YALLQKYAEQLDADIVCLQEI   57 (231)
Q Consensus        37 ~~~i~~~i~~~~~DVi~LQEv   57 (231)
                      .+.+.+.+.+.+||+|||-=.
T Consensus        62 ~e~l~~~~~~~~~diV~lS~~   82 (179)
T 3kp1_A           62 VEKLVDAAIELKADAILASTI   82 (179)
T ss_dssp             HHHHHHHHHHTTCSEEEEECC
T ss_pred             HHHHHHHHHHCCCCEEEEEHH
T ss_conf             899999999769999997522


Done!