HHsearch results for GI: 254780797 and protein with PDBid: 1ako_A
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.70 E-value=8.3e-16 Score=101.55 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=86.9
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 899887310076777556667666687999999999997518989999727998--899987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+.+ + ++...+.++|+..+||||||||+... ......+...+|.+.+.... .
T Consensus 1 Mki~s~NvnGi------------r----~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~---~ 61 (268)
T 1ako_A 1 MKFVSFNINGL------------R----ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQK---G 61 (268)
T ss_dssp CEEEEEECSCG------------G----GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEET---T
T ss_pred CEEEEEEHHHH------------H----HHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCC---C
T ss_conf 98999972318------------8----759889999987899899998332890018988897559646424754---6
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
....+......+...... .....................+.+.++++|...+...... .....+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~k~~~~ 129 (268)
T 1ako_A 62 HYGVALLTKETPIAVRRG-------FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP-----IKFPAKAQFY 129 (268)
T ss_dssp EEEEEEEESSCCSEEEES-------STTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT-----THHHHHHHHH
T ss_pred CCCCEEEECCCCHHHCCC-------CCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHH-----HHHHHHHHHH
T ss_conf 666226512352331048-------7633322223101100012358778887641688642200-----2137899999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 9999999974048878999913688846
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231)
+.+...+....+.+.++|+|||||..+.
T Consensus 130 ~~~~~~~~~~~~~~~~~il~GdfN~~~~ 157 (268)
T 1ako_A 130 QNLQNYLETELKRDNPVLIMGDMNISPT 157 (268)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCCS
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 9999999998737997686345234841