HHsearch results for GI: 254780797 and protein with PDBid: 1vyb_A
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.76 E-value=4.9e-17 Score=108.12 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=80.9
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK 83 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
...|||+||||+.+ +...+...|.++|++.+|||+||||+.....-........+.+++... ...
T Consensus 5 ~~~lki~t~Ni~g~--------------~~~~~~~~i~~~i~~~~pDIi~LQEt~~~~~~~~~~~~~~~~~~~~~~-~~~ 69 (238)
T 1vyb_A 5 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQAN-GKQ 69 (238)
T ss_dssp CCCEEEEEEECSCC--------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEEC-CSS
T ss_pred CCCCEEEEEECCCC--------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEEEE-CCC
T ss_conf 88889999988884--------------123446799999986699299998364662445311110343066441-036
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231)
.....+++++.......... .. ........+.+..++..+.++|+|++... . . +
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~i~~vy~~~~~-------~-~-----~--- 123 (238)
T 1vyb_A 70 KKAGVAILVSDKTDFKPTKI--KR--------DKEGHYIMVKGSIQQEELTILNIYAPNTG-------A-P-----R--- 123 (238)
T ss_dssp SSCCEEEEECTTCCCEEEEE--EE--------CTTSSEEEEEEEETTEEEEEEEEECCSSS-------H-H-----H---
T ss_pred CCCCEEEEEEECCCEECCCC--CC--------CCCCCEEEEEEEECCCEEEEEEECCCCCH-------H-H-----H---
T ss_conf 74555899750231001564--45--------75554023688505744999962376302-------4-7-----7---
Q ss_pred HHHHHHHHHH-HCCCCCCEEEEEECCCCCC
Q ss_conf 9999999997-4048878999913688846
Q gi|254780797|r 164 ATWLKQWVDQ-KNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 164 ~~~l~~~i~~-~~~~~~~vii~GDFN~~~~ 192 (231)
...+++.. ......++||+||||....
T Consensus 124 --~~~~~~~~~~~~~~~~~il~GDfN~~~~ 151 (238)
T 1vyb_A 124 --FIKQVLSDLQRDLDSHTLIMGDFNTPLS 151 (238)
T ss_dssp --HHHHHHHHTTTTCCTTEEEEEECSSCSS
T ss_pred --HHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf --8888899998630365011010046874