HHsearch results for GI: 254780797 and protein with PDBid: 2j63_A
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.79 E-value=2.8e-18 Score=114.74 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=86.1
Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH---HHHHHHH-CCCCCEEEEEECC
Q ss_conf 54899887310076777556667666687999999999997518989999727998---8999872-6232216774035
Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY---EAIKRVF-PNDKWDILYSGSN 80 (231)
Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~---~~~~~~~-~~~~~~~~~~~~~ 80 (231)
.-|||+||||+.+. .+...+...+.++|+..+||||||||+... ......+ ...+|.+++....
T Consensus 148 ~~mKIiSWNVNGlR------------~~~kk~~~~l~~~L~~~~pDIIcLQEtk~~~~~~~~~~~~~~~~gY~~~~~~~~ 215 (467)
T 2j63_A 148 RMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCA 215 (467)
T ss_dssp TEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCS
T ss_pred CEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECCC
T ss_conf 44689999404777------------754306589999998569998999874246444697888751378516874246
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECC----CC------C-------CCCCCCCCCCCEEEEEEEE------ECCEEEEEEE
Q ss_conf 7876503568861464101000012----21------4-------6756554457504999998------4997899999
Q gi|254780797|r 81 TDKHAMHTAIVIRKGAIHLLQKSYL----PM------D-------TEGLDSKAGKRRAVEILFE------VDGRKIWLLD 137 (231)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~----~~------~-------~~~~~~~~~~r~~~~~~~~------~~g~~~~v~n 137 (231)
...+...++++++............ .. . ..........| .+.+.+. .+...++|+|
T Consensus 216 ~kkgysGvAi~sK~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~egR-~~~~~~~~~~~~~~~~~~~~l~n 294 (467)
T 2j63_A 216 FKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGR-VLTTFLSPDPDSASSSSRIALVN 294 (467)
T ss_dssp SSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCC-EEEEEECSSCCC----CCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCEEEEE
T ss_conf 65530408999817764334331111254456766544444433356555665552-58998415653334458889998
Q ss_pred EEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHH-----------HCCCCCCEEEEEECCCCCC
Q ss_conf 75116888875430025457-8875489999999997-----------4048878999913688846
Q gi|254780797|r 138 IHLKSFCFLDSIEDSYISSC-YMLNLQATWLKQWVDQ-----------KNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 138 ~HL~s~~~~~~~~~~~~~~~-~~~~~q~~~l~~~i~~-----------~~~~~~~vii~GDFN~~~~ 192 (231)
+|++...........+...+ ..+...++.|..+... ....+.++|||||||..+.
T Consensus 295 ~y~pn~~~~~~~~~~r~~~~d~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~vIl~GDfNv~~~ 361 (467)
T 2j63_A 295 TYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAER 361 (467)
T ss_dssp EECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCS
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 6467765542026778899999999999999886653101101344555225774687244355752