HHsearch results for GI: 254780797 and protein with PDBid: 2j63_A

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.79  E-value=2.8e-18  Score=114.74  Aligned_cols=175  Identities=14%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH---HHHHHHH-CCCCCEEEEEECC
Q ss_conf             54899887310076777556667666687999999999997518989999727998---8999872-6232216774035
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY---EAIKRVF-PNDKWDILYSGSN   80 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~---~~~~~~~-~~~~~~~~~~~~~   80 (231)
                      .-|||+||||+.+.            .+...+...+.++|+..+||||||||+...   ......+ ...+|.+++....
T Consensus       148 ~~mKIiSWNVNGlR------------~~~kk~~~~l~~~L~~~~pDIIcLQEtk~~~~~~~~~~~~~~~~gY~~~~~~~~  215 (467)
T 2j63_A          148 RMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCA  215 (467)
T ss_dssp             TEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCS
T ss_pred             CEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECCC
T ss_conf             44689999404777------------754306589999998569998999874246444697888751378516874246


Q ss_pred             CCCCCCEEEEEEECCCCEEEEEECC----CC------C-------CCCCCCCCCCCEEEEEEEE------ECCEEEEEEE
Q ss_conf             7876503568861464101000012----21------4-------6756554457504999998------4997899999
Q gi|254780797|r   81 TDKHAMHTAIVIRKGAIHLLQKSYL----PM------D-------TEGLDSKAGKRRAVEILFE------VDGRKIWLLD  137 (231)
Q Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~----~~------~-------~~~~~~~~~~r~~~~~~~~------~~g~~~~v~n  137 (231)
                      ...+...++++++............    ..      .       ..........| .+.+.+.      .+...++|+|
T Consensus       216 ~kkgysGvAi~sK~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~egR-~~~~~~~~~~~~~~~~~~~~l~n  294 (467)
T 2j63_A          216 FKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGR-VLTTFLSPDPDSASSSSRIALVN  294 (467)
T ss_dssp             SSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCC-EEEEEECSSCCC----CCEEEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCEEEEE
T ss_conf             65530408999817764334331111254456766544444433356555665552-58998415653334458889998


Q ss_pred             EEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHH-----------HCCCCCCEEEEEECCCCCC
Q ss_conf             75116888875430025457-8875489999999997-----------4048878999913688846
Q gi|254780797|r  138 IHLKSFCFLDSIEDSYISSC-YMLNLQATWLKQWVDQ-----------KNNLNMPFIIAGDFNRKIN  192 (231)
Q Consensus       138 ~HL~s~~~~~~~~~~~~~~~-~~~~~q~~~l~~~i~~-----------~~~~~~~vii~GDFN~~~~  192 (231)
                      +|++...........+...+ ..+...++.|..+...           ....+.++|||||||..+.
T Consensus       295 ~y~pn~~~~~~~~~~r~~~~d~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~vIl~GDfNv~~~  361 (467)
T 2j63_A          295 TYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAER  361 (467)
T ss_dssp             EECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCS
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             6467765542026778899999999999999886653101101344555225774687244355752