HHsearch results for GI: 254780797 and protein with PDBid: 2jc4_A
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.58 E-value=1.7e-13 Score=89.19 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=78.0
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 89988731007677755666766668799999999999751898999972799--8899987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+++ .++++.+.++|++.+||||||||+.. ...........++.+.+... ..
T Consensus 1 mKi~T~Nvng~----------------r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~---~~ 61 (256)
T 2jc4_A 1 MKITTWNVNSL----------------NVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQ---KT 61 (256)
T ss_dssp CEEEEEECSCH----------------HHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECC---SS
T ss_pred CEEEEEEECCH----------------HHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCC---CC
T ss_conf 98999981779----------------999999999998489989999865558000897897212671354165---45
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
....++........... .... .......| .. .....+ ..++++|+.++....... ...+....
T Consensus 62 ~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (256)
T 2jc4_A 62 YNGVAIVSRSVPQDVHF-GLPA-----LPDDPQRR-VI--AATVSG--VRVINVYCVNGEALDSPK------FKYKEQWF 124 (256)
T ss_dssp SCCEEEEESSCCEEEEE-SCTT-----STTCCSCC-EE--EEEETT--EEEEEEECCCCCSTTSHH------HHHHHHHH
T ss_pred CCCCEEEEEECCCCCCC-CCCC-----CCCCCCCE-EE--EEECCC--EEEEEEECCCCCCCCHHH------HHHHHHHH
T ss_conf 55732788406641112-4688-----87775515-99--985087--799999756998764277------99999999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 9999999974048878999913688846
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231)
..+.+...+....+.+++++||||....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~gd~n~~~~ 152 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9999888876224887430343235864