HHsearch results for GI: 254780797 and protein with PDBid: 2o3h_A
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.51 E-value=5.1e-13 Score=86.69 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=70.9
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCC
Q ss_conf 65489988731007677755666766668799999999999751898999972799--8899987262322167740357
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNT 81 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
..+|||+||||+.+. . ..-+.+.++|++.+||||||||+.. ......+....+|.+.......
T Consensus 26 ~~~mkiiSwNvnGlr--------------~-~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (285)
T 2o3h_A 26 PATLKIASWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 90 (285)
T ss_dssp BCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC
T ss_pred CCCEEEEEEECCCHH--------------H-HHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCC
T ss_conf 996799999817877--------------7-3233589999757997999997547811188868615787445541135
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 87650356886146410100001221467565544575049999984997899999751168888754300254578875
Q gi|254780797|r 82 DKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLN 161 (231)
Q Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~ 161 (231)
...+...+..+................ .... .........+..+..++++....... ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 153 (285)
T 2o3h_A 91 DKEGYSGVGLLSRQCPLKVSYGIGDEE-------HDQE-GRVIVAEFDSFVLVTAYVPNAGRGLV---------RLEYRQ 153 (285)
T ss_dssp --CCSCCEEEEESSCCSEEEESCSCGG-------GSSB-CCEEEEECSSCEEEEEECCCCCGGGT---------THHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCC-------CCCC-CEEEEEEECCEEEEEEEECCCCCCCC---------CHHHHH
T ss_conf 566544312324668605663578774-------4433-21899983544999997046777520---------067888
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 48999999999740488789999136888
Q gi|254780797|r 162 LQATWLKQWVDQKNNLNMPFIIAGDFNRK 190 (231)
Q Consensus 162 ~q~~~l~~~i~~~~~~~~~vii~GDFN~~ 190 (231)
+................+++++||||..
T Consensus 154 -~~~~~~~~~~~~~~~~~~~i~~gd~n~~ 181 (285)
T 2o3h_A 154 -RWDEAFRKFLKGLASRKPLVLCGDLNVA 181 (285)
T ss_dssp -HHHHHHHHHHHHHHTTSCEEEEEECSCC
T ss_pred -HHHHHHHHHHHHHCCCCEEEEECCHHCC
T ss_conf -7756665544430465438970511128