HHsearch results for GI: 254780797 and protein with PDBid: 3i41_A
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=99.93 E-value=1e-24 Score=149.03 Aligned_cols=177 Identities=15% Similarity=0.077 Sum_probs=107.6
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 654899887310076777556667666687999999999997518989999727998899987262--322167740357
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPN--DKWDILYSGSNT 81 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~--~~~~~~~~~~~~ 81 (231)
.+.||||||||..+..... .......+.+.|++.|...+|||||||||.+......+... ..|.+.....+.
T Consensus 27 ~~~lrv~syNi~~~~~~~~------~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~~~ 100 (317)
T 3i41_A 27 DTDLKLVSHNVYMLSTVLY------PNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGR 100 (317)
T ss_dssp -CCCCEEEEEEEECCTTTS------TTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS
T ss_pred CCCEEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9968999852888766667------8706889999999999766999899986767354999999888658946776046
Q ss_pred -------------CCCC--CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCC
Q ss_conf -------------8765--0356886146410100001221467565544575049999984997899999751168888
Q gi|254780797|r 82 -------------DKHA--MHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFL 146 (231)
Q Consensus 82 -------------~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~ 146 (231)
.... ...+++++.+.... ................|+++.+.+..++.+++|+|+||+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~~ilSr~pi~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~ 177 (317)
T 3i41_A 101 SQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEK---IQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSR 177 (317)
T ss_dssp CSTTCSEEEESCCSSCSBCCCCEEEESSCEEEE---EEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE---EEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
T ss_conf 654333322444555424773799985883005---88973678884101474469999962997999997435556775
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCC
Q ss_conf 75430025457887548999999999740-488789999136888462
Q gi|254780797|r 147 DSIEDSYISSCYMLNLQATWLKQWVDQKN-NLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 147 ~~~~~~~~~~~~~~~~q~~~l~~~i~~~~-~~~~~vii~GDFN~~~~~ 193 (231)
... ......|..|++.+..++.... ..+.|+|+|||||..+.+
T Consensus 178 ~~~----~~~~~~R~~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~ 221 (317)
T 3i41_A 178 CGA----GHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp SCT----THHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 205----67899999999999986655401466757984447889887