Query gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 231
No_of_seqs 122 out of 2316
Neff 10.3
Searched_HMMs 23785
Date Mon May 30 12:46:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780797.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i41_A Beta-hemolysin; beta to 99.9 1E-24 4.2E-29 149.0 17.5 177 4-193 27-221 (317)
2 1zwx_A SMCL, sphingomyelinase- 99.9 1.3E-24 5.4E-29 148.5 17.6 179 4-193 8-202 (301)
3 2ddr_A Sphingomyelin phosphodi 99.9 1.4E-23 6.1E-28 142.9 18.9 181 4-195 7-204 (306)
4 3ngq_A CCR4-NOT transcription 99.9 1.4E-21 5.8E-26 132.3 15.0 180 4-193 29-260 (398)
5 3mpr_A Putative endonuclease/e 99.9 5.4E-21 2.3E-25 129.2 16.2 172 4-194 4-186 (298)
6 3l1w_A Uncharacterized protein 99.8 4.9E-20 2.1E-24 124.1 15.4 167 7-194 1-174 (257)
7 2a40_B Deoxyribonuclease-1; WA 99.8 1.2E-19 5E-24 122.0 15.8 166 7-196 1-178 (260)
8 3g6s_A Putative endonuclease/e 99.8 8E-18 3.4E-22 112.3 17.2 168 5-193 2-179 (267)
9 2j63_A AP-endonuclease; base e 99.8 2.8E-18 1.2E-22 114.7 13.9 175 5-192 148-361 (467)
10 1wdu_A TRAS1 ORF2P; four-layer 99.8 1.3E-16 5.6E-21 105.8 18.7 143 4-191 17-159 (245)
11 1vyb_A ORF2 contains A reverse 99.8 4.9E-17 2E-21 108.1 16.3 146 4-192 5-151 (238)
12 1sr4_B CDT B, cytolethal diste 99.7 3E-17 1.3E-21 109.2 9.5 168 4-193 2-184 (261)
13 1ako_A Exonuclease III; AP-end 99.7 8.3E-16 3.5E-20 101.6 15.4 155 7-192 1-157 (268)
14 2f1n_A CDT B, cytolethal diste 99.7 7.4E-17 3.1E-21 107.1 9.4 166 4-202 13-201 (262)
15 3mtc_A Type II inositol-1,4,5- 99.7 1.4E-17 5.8E-22 111.0 5.3 160 6-193 9-197 (313)
16 3nr8_B Phosphatidylinositol-3, 99.7 3.7E-17 1.5E-21 108.8 5.6 172 7-192 10-197 (316)
17 1i9z_A Synaptojanin, phosphati 99.7 1.5E-15 6.4E-20 100.2 12.7 159 6-192 26-213 (347)
18 2xsw_A 72 kDa inositol polypho 99.6 6.2E-15 2.6E-19 96.9 13.2 160 6-192 27-210 (357)
19 1hd7_A DNA-(apurinic or apyrim 99.6 3.4E-14 1.4E-18 92.9 13.4 151 5-190 60-214 (318)
20 2jc4_A Exodeoxyribonuclease II 99.6 1.7E-13 7.3E-18 89.2 16.5 150 7-192 1-152 (256)
21 2imq_X Salivary nitrophorin; f 99.5 1.3E-13 5.6E-18 89.8 11.8 157 6-192 8-177 (282)
22 2o3h_A DNA-(apurinic or apyrim 99.5 5.1E-13 2.2E-17 86.7 13.7 154 4-190 26-181 (285)
23 2ei9_A Non-LTR retrotransposon 99.5 3.9E-13 1.6E-17 87.3 12.2 130 1-190 2-131 (240)
24 3g91_A MTH0212, exodeoxyribonu 99.5 2.2E-12 9E-17 83.4 14.4 153 5-191 2-156 (265)
25 2voa_A AF_EXO, XTHA, exodeoxyr 99.4 5.7E-12 2.4E-16 81.1 12.5 148 7-191 2-151 (257)
26 2jc5_A Exodeoxyribonuclease; h 99.2 1.7E-09 7.1E-14 68.0 14.8 75 7-97 2-78 (259)
27 1f89_A 32.5 kDa protein YLR351 84.7 1.1 4.7E-05 21.0 4.5 45 2-58 6-55 (291)
28 2e11_A Hydrolase; dimethylarse 28.1 24 0.001 13.9 9.8 27 32-58 17-45 (266)
29 1xm7_A Hypothetical protein AQ 27.3 25 0.0011 13.8 2.0 50 124-188 100-149 (195)
30 3nme_A Ptpkis1 protein, SEX4 g 27.0 19 0.00078 14.5 1.2 14 177-190 180-193 (294)
31 3ive_A Nucleotidase; structura 24.6 28 0.0012 13.5 7.3 77 1-78 1-92 (509)
32 2w1v_A Nitrilase-2, nitrilase 21.2 33 0.0014 13.1 4.8 27 32-58 16-45 (276)
No 1
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=99.93 E-value=1e-24 Score=149.03 Aligned_cols=177 Identities=15% Similarity=0.077 Sum_probs=107.6
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 654899887310076777556667666687999999999997518989999727998899987262--322167740357
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPN--DKWDILYSGSNT 81 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~--~~~~~~~~~~~~ 81 (231)
.+.||||||||..+..... .......+.+.|++.|...+|||||||||.+......+... ..|.+.....+.
T Consensus 27 ~~~lrv~syNi~~~~~~~~------~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~~~ 100 (317)
T 3i41_A 27 DTDLKLVSHNVYMLSTVLY------PNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGR 100 (317)
T ss_dssp -CCCCEEEEEEEECCTTTS------TTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS
T ss_pred CCCEEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9968999852888766667------8706889999999999766999899986767354999999888658946776046
Q ss_pred -------------CCCC--CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCC
Q ss_conf -------------8765--0356886146410100001221467565544575049999984997899999751168888
Q gi|254780797|r 82 -------------DKHA--MHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFL 146 (231)
Q Consensus 82 -------------~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~ 146 (231)
.... ...+++++.+.... ................|+++.+.+..++.+++|+|+||+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~~ilSr~pi~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~ 177 (317)
T 3i41_A 101 SQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEK---IQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSR 177 (317)
T ss_dssp CSTTCSEEEESCCSSCSBCCCCEEEESSCEEEE---EEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE---EEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
T ss_conf 654333322444555424773799985883005---88973678884101474469999962997999997435556775
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCC
Q ss_conf 75430025457887548999999999740-488789999136888462
Q gi|254780797|r 147 DSIEDSYISSCYMLNLQATWLKQWVDQKN-NLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 147 ~~~~~~~~~~~~~~~~q~~~l~~~i~~~~-~~~~~vii~GDFN~~~~~ 193 (231)
... ......|..|++.+..++.... ..+.|+|+|||||..+.+
T Consensus 178 ~~~----~~~~~~R~~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~ 221 (317)
T 3i41_A 178 CGA----GHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT 221 (317)
T ss_dssp SCT----THHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 205----67899999999999986655401466757984447889887
No 2
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.93 E-value=1.3e-24 Score=148.48 Aligned_cols=179 Identities=15% Similarity=0.089 Sum_probs=109.6
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCC--CCEEEEEECCC
Q ss_conf 6548998873100767775566676666879999999999975189899997279988999872623--22167740357
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPND--KWDILYSGSNT 81 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~--~~~~~~~~~~~ 81 (231)
-+.|||+||||.++..... + ...+.++++.|++.|...+|||||||||.+......+.... .+.+.......
T Consensus 8 p~~lki~swNv~~~~~~~~----~--~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (301)
T 1zwx_A 8 PGNFKITSHNVYLFSRNIY----P--NWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGR 81 (301)
T ss_dssp CCSCEEEEEEEEECCTTTS----T--TSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS
T ss_pred CCCEEEEEEECCCCCCCCC----C--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 9977999776787666657----8--735899999999998756999899984777340799999876541621220255
Q ss_pred CC-------------CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCC
Q ss_conf 87-------------65035688614641010000122146756554457504999998499789999975116888875
Q gi|254780797|r 82 DK-------------HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDS 148 (231)
Q Consensus 82 ~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~ 148 (231)
.. .....|+++..+...... ................|.++.+.+..++..++|+|+||+++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~lsk~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~ 160 (301)
T 1zwx_A 82 SKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEK-SQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLIS 160 (301)
T ss_dssp CSTTCSEEEC-----CCBCCCCEEEESSCEEEE-EEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSC
T ss_pred CCCCCCCEECCCCCCEECCCEEEEEECCCCCCC-EEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCC
T ss_conf 666644210134553040554899953564332-3686056887310136218999996699599999954556787531
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCC
Q ss_conf 430025457887548999999999740-488789999136888462
Q gi|254780797|r 149 IEDSYISSCYMLNLQATWLKQWVDQKN-NLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 149 ~~~~~~~~~~~~~~q~~~l~~~i~~~~-~~~~~vii~GDFN~~~~~ 193 (231)
.......|..|++++.+++.+.. ..+.++|||||||..+..
T Consensus 161 ----~~~~~~~R~~q~~~~~~~l~~~~~~~~~~vii~GDfN~~~~~ 202 (301)
T 1zwx_A 161 ----KDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT 202 (301)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf ----357899999999997754332014675159998466989886
No 3
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.92 E-value=1.4e-23 Score=142.87 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=106.3
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCC--CEEEEEECC-
Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232--216774035-
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDK--WDILYSGSN- 80 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~--~~~~~~~~~- 80 (231)
..+||||||||.++.... . ......++.+.|++.|...+|||||||||.+......+..... +........
T Consensus 7 ~~~l~i~T~Ni~~~~~~~----~--~~~~~~~r~~~i~~~i~~~~~DIi~LQEV~~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNL----Y--PNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGR 80 (306)
T ss_dssp CCEEEEEEEEEEECCTTT----C--TTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTS
T ss_pred CCCEEEEEEECCCCCCCC----C--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCC
T ss_conf 997799988688576777----8--8705899999999998736999899984777763789999887753510011012
Q ss_pred -------------CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCC
Q ss_conf -------------7876503568861464101000012214675655445750499999849978999997511688887
Q gi|254780797|r 81 -------------TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLD 147 (231)
Q Consensus 81 -------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~ 147 (231)
........|+++.++.. ....................|+++.+.+..++..+.|+|+||+++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~sr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 159 (306)
T 2ddr_A 81 SSGSEWDKTLGNYSSSTPEDGGVAIVSKWP-IAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMC 159 (306)
T ss_dssp CCSTTSSEEEESCCTTCSSCCCCEEEESSC-EEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC----
T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEECC-CCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 467764215512445513264379998236-4000456505677765334523899998369958999996877665430
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCC
Q ss_conf 5430025457887548999999999740-48878999913688846222
Q gi|254780797|r 148 SIEDSYISSCYMLNLQATWLKQWVDQKN-NLNMPFIIAGDFNRKINHSH 195 (231)
Q Consensus 148 ~~~~~~~~~~~~~~~q~~~l~~~i~~~~-~~~~~vii~GDFN~~~~~~~ 195 (231)
. .......+..|+.++..++.+.. ..+.|+|||||||.+.....
T Consensus 160 ~----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~ 204 (306)
T 2ddr_A 160 G----KTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAE 204 (306)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTS
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHH
T ss_conf 1----23567899999998776665421346885799714678866422
No 4
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.88 E-value=1.4e-21 Score=132.34 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=97.4
Q ss_pred CCEEEEEEEEHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH---HHHHHCCCCCEEEEEE
Q ss_conf 6548998873100--7677755666766668799999999999751898999972799889---9987262322167740
Q gi|254780797|r 4 AQRIRIASWNINN--LSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA---IKRVFPNDKWDILYSG 78 (231)
Q Consensus 4 ~~~lrv~twNi~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~---~~~~~~~~~~~~~~~~ 78 (231)
+.+||||||||.. +.....-...+.....++.+.+.|++.|...+|||||||||++... +...+...+|.+.+..
T Consensus 29 ~~~lrV~SyNVL~~~~~~~~~~~~~~~~~l~~~~R~~~I~~~I~~~~pDII~LQEV~~~~~~~~l~~~l~~~g~~~~~~~ 108 (398)
T 3ngq_A 29 SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSP 108 (398)
T ss_dssp CEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 98189996685765567733368998166499999999999998669988999747653236999999986298358762
Q ss_pred CCCCC--------CCCEEEEEEECCCCEEEEEECCCCCCCC-----C---------------------CCCCCCCEEEEE
Q ss_conf 35787--------6503568861464101000012214675-----6---------------------554457504999
Q gi|254780797|r 79 SNTDK--------HAMHTAIVIRKGAIHLLQKSYLPMDTEG-----L---------------------DSKAGKRRAVEI 124 (231)
Q Consensus 79 ~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~---------------------~~~~~~r~~~~~ 124 (231)
..... .....+++++.............++... . ............
T Consensus 109 ~~~~~~~~~~~~~~~~gvai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (398)
T 3ngq_A 109 KSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKP 188 (398)
T ss_dssp SCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC------
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEE
T ss_conf 46765445677766630799986676625667788616766666655300110100133210356641135422210221
Q ss_pred EEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCCEEEEEECCCCC
Q ss_conf 998499789999975116888875430025457887548999999999740-------------4887899991368884
Q gi|254780797|r 125 LFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN-------------NLNMPFIIAGDFNRKI 191 (231)
Q Consensus 125 ~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~-------------~~~~~vii~GDFN~~~ 191 (231)
.....+..+.|+|+||++.... ...+..|++.+.++++... ..+.++|+|||||..+
T Consensus 189 ~~~~~~~~~~v~ntHL~~~~~~----------~~~r~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~ 258 (398)
T 3ngq_A 189 IHAADKQLLIVANAHMHWDPEY----------SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258 (398)
T ss_dssp -----CCEEEEEEEECCCCTTC----------HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCT
T ss_pred ECCCCCCEEEEEEECCCCCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf 0157885699999665556653----------078999999999999999987665320123445687448714546787
Q ss_pred CC
Q ss_conf 62
Q gi|254780797|r 192 NH 193 (231)
Q Consensus 192 ~~ 193 (231)
.+
T Consensus 259 ~~ 260 (398)
T 3ngq_A 259 DS 260 (398)
T ss_dssp TS
T ss_pred CC
T ss_conf 64
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=5.4e-21 Score=129.19 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=96.4
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHCCCCCEEEEEE-CC
Q ss_conf 6548998873100767775566676666879999999999975189899997279988--99987262322167740-35
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE--AIKRVFPNDKWDILYSG-SN 80 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~--~~~~~~~~~~~~~~~~~-~~ 80 (231)
.++||||||||+++..... .....++.+++.|+++|+..+|||||||||.... .+...+.... +.... ..
T Consensus 4 p~~lrV~s~Ni~~~~~~~~-----~~~~~~~~R~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~~~--~~~~~~~~ 76 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDS-----ARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALPGYD--YIGVGRDD 76 (298)
T ss_dssp CEEEEEEEEECCCCCHHHH-----HHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHSTTEE--EECCCTTT
T ss_pred CCCEEEEEEECCCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC--EEEEECCC
T ss_conf 9966999897880768886-----5466799999999999985799889999333789899997664570--57640247
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCCC-----CCCCCCCCCEEEEEEEE--ECCEEEEEEEEEECCCCCCCCCCCHH
Q ss_conf 787650356886146410100001221467-----56554457504999998--49978999997511688887543002
Q gi|254780797|r 81 TDKHAMHTAIVIRKGAIHLLQKSYLPMDTE-----GLDSKAGKRRAVEILFE--VDGRKIWLLDIHLKSFCFLDSIEDSY 153 (231)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~--~~g~~~~v~n~HL~s~~~~~~~~~~~ 153 (231)
........+++++................. ........|......+. ..+..+.++++|+.+....
T Consensus 77 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------- 149 (298)
T 3mpr_A 77 GKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGKK------- 149 (298)
T ss_dssp SSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHH-------
T ss_pred CCCCCCEEEEEEECCCCCEECEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHH-------
T ss_conf 8766421489983774321000233024222344444443333104799998537871699984245556157-------
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 545788754899999999-97404887899991368884622
Q gi|254780797|r 154 ISSCYMLNLQATWLKQWV-DQKNNLNMPFIIAGDFNRKINHS 194 (231)
Q Consensus 154 ~~~~~~~~~q~~~l~~~i-~~~~~~~~~vii~GDFN~~~~~~ 194 (231)
.+..+.+.....+ ......+.|+|+|||||..+.++
T Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~ 186 (298)
T 3mpr_A 150 -----ARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQ 186 (298)
T ss_dssp -----HHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSH
T ss_pred -----HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCH
T ss_conf -----7899988888888653025788789707349898836
No 6
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.85 E-value=4.9e-20 Score=124.08 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=95.0
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 89988731007677755666766668799999999999751898999972799889998726232216774035787650
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDKHAM 86 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (231)
||||||||++.... +....++.+.+.|+++|++.+|||||||||... ....+.....+.+.+..........
T Consensus 1 lrI~T~Ni~~~~~~-------~~~~~~~~R~~~i~~~i~~~~~DIi~LQEv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (257)
T 3l1w_A 1 MKIATYNVRVDTEY-------DQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPN-QVRDLKAYTTFTCLSAEREGDGQGE 72 (257)
T ss_dssp CEEEEEECCCCCGG-------GGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHH-HHHHHHHHSSSEEEEEESSSSSCSC
T ss_pred CEEEEEECCCCCCC-------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 98999967827788-------754589999999999998749999999788779-9999875114540244025777761
Q ss_pred EEEEEEECCCCEEEEEECCCCC-----CCCCCCCCCCCEEEEEE--EEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 3568861464101000012214-----67565544575049999--9849978999997511688887543002545788
Q gi|254780797|r 87 HTAIVIRKGAIHLLQKSYLPMD-----TEGLDSKAGKRRAVEIL--FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYM 159 (231)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~~~~~~--~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~ 159 (231)
+.++++................ ..........|...... ....+..+.++++|+++.. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------------~~~ 140 (257)
T 3l1w_A 73 GLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHIS------------AHA 140 (257)
T ss_dssp EEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC------------HHH
T ss_pred EEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCC------------HHH
T ss_conf 57899726766404421220466743021245443331357888885278831688742667663------------167
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 75489999999997404887899991368884622
Q gi|254780797|r 160 LNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHS 194 (231)
Q Consensus 160 ~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~ 194 (231)
+..|+..+.....+. ..+.|+|++||||..+...
T Consensus 141 ~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~ 174 (257)
T 3l1w_A 141 RLAGMTVILEELHDK-IAQYPTLLMGDFNAESGEE 174 (257)
T ss_dssp HHHHHHHHHHHTHHH-HHHSCEEEEEECCCCTTSH
T ss_pred HHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCHH
T ss_conf 999999988899854-7789768834568874305
No 7
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.84 E-value=1.2e-19 Score=122.03 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=92.2
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHH----C--CCCCEEEEEE
Q ss_conf 899887310076777556667666687999999999997518989999727998--8999872----6--2322167740
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVF----P--NDKWDILYSG 78 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~----~--~~~~~~~~~~ 78 (231)
|||+||||++|+.. ..+..+.++.|++.++ +|||||||||.+. ..+..++ . ...|.+....
T Consensus 1 lrI~swNi~~~g~~---------~~~~~~~~~~i~~~~~--~~DIv~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (260)
T 2a40_B 1 LKIAAFNIRTFGET---------KMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE 69 (260)
T ss_dssp CEEEEEEEEEESHH---------HHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred CEEEEEECCCCCCC---------CCCHHHHHHHHHHHCC--CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 98999966834778---------6663999999999727--999899994224777189999987663258841688557
Q ss_pred CC-CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE---CCEEEEEEEEEECCCCCCCCCCCHHH
Q ss_conf 35-787650356886146410100001221467565544575049999984---99789999975116888875430025
Q gi|254780797|r 79 SN-TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEV---DGRKIWLLDIHLKSFCFLDSIEDSYI 154 (231)
Q Consensus 79 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~g~~~~v~n~HL~s~~~~~~~~~~~~ 154 (231)
.. ........++.+..........................|.++...+.. .++.+.++++|+++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~h~~~~~---------- 139 (260)
T 2a40_B 70 PLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD---------- 139 (260)
T ss_dssp CBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG----------
T ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC----------
T ss_conf 7776655745799960553046652012456667755433311027889852677358999850478632----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 457887548999999999740488789999136888462222
Q gi|254780797|r 155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHS 196 (231)
Q Consensus 155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~~ 196 (231)
...+..++..+.+.+.+ ..++.|+|+|||||..+.+...
T Consensus 140 --~~~~~~~~~~~~~~~~~-~~~~~~~iv~GDfN~~~~~~~~ 178 (260)
T 2a40_B 140 --AVAEINSLYDVYLDVQQ-KWHLNDVMLMGDFNADCSYVTS 178 (260)
T ss_dssp --HHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCSTTTSCG
T ss_pred --HHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCHH
T ss_conf --48999999999999986-3658888994666667775257
No 8
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.79 E-value=8e-18 Score=112.28 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHCCCCCEEEEEECCCC
Q ss_conf 548998873100767775566676666879999999999975189899997279988--999872623221677403578
Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE--AIKRVFPNDKWDILYSGSNTD 82 (231)
Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (231)
++|||+||||++..... ....++.+.+.|+++|+..+|||||||||.... .+...+....|.+.. .....
T Consensus 2 ~~lri~TyNI~~~~~~d-------~~~~~~~R~~~i~~~i~~~~~DIi~LQEv~~~~~~~l~~~l~~~~~~~~~-~~~~~ 73 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQD-------SLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVG-RDDGK 73 (267)
T ss_dssp EEEEEEEEECCCCCGGG-------GGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCTTEEEECCC-TTTSS
T ss_pred CCEEEEEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE-CCCCC
T ss_conf 96499989578388885-------53689999999999998379999999857668989999861006505674-14667
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCCC------CCCCCCCCCCEEEEEEEE--ECCEEEEEEEEEECCCCCCCCCCCHHH
Q ss_conf 765035688614641010000122146------756554457504999998--499789999975116888875430025
Q gi|254780797|r 83 KHAMHTAIVIRKGAIHLLQKSYLPMDT------EGLDSKAGKRRAVEILFE--VDGRKIWLLDIHLKSFCFLDSIEDSYI 154 (231)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~r~~~~~~~~--~~g~~~~v~n~HL~s~~~~~~~~~~~~ 154 (231)
..+...++++................. .........+......+. ..+....++++|.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 143 (267)
T 3g6s_A 74 TAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVG---------- 143 (267)
T ss_dssp SSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC----------
T ss_pred CCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCH----------
T ss_conf 7872148999677563554201014654222121133344430467886420588824789732454210----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 457887548999999999740488789999136888462
Q gi|254780797|r 155 SSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 155 ~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231)
...+..|.....+... ....+.|+|++||||.....
T Consensus 144 --~~~~~~~~~~~~~~~~-~~~~~~~~i~~GDfN~~~~~ 179 (267)
T 3g6s_A 144 --EEARRQSALLIIRKIK-EIVGERPAVVTGDFNVTDAS 179 (267)
T ss_dssp --HHHHHHHHHHHHHHHH-HHTTTSCEEEEEECSSCTTS
T ss_pred --HHHHHHHHHHHHHHHH-HHCCCCCCEECCCCCCCCCC
T ss_conf --1678999999998765-30268972132667889766
No 9
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.79 E-value=2.8e-18 Score=114.74 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=86.1
Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH---HHHHHHH-CCCCCEEEEEECC
Q ss_conf 54899887310076777556667666687999999999997518989999727998---8999872-6232216774035
Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY---EAIKRVF-PNDKWDILYSGSN 80 (231)
Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~---~~~~~~~-~~~~~~~~~~~~~ 80 (231)
.-|||+||||+.+. .+...+...+.++|+..+||||||||+... ......+ ...+|.+++....
T Consensus 148 ~~mKIiSWNVNGlR------------~~~kk~~~~l~~~L~~~~pDIIcLQEtk~~~~~~~~~~~~~~~~gY~~~~~~~~ 215 (467)
T 2j63_A 148 RMYKFITWNVAGLR------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCA 215 (467)
T ss_dssp TEEEEEEEECSCHH------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCS
T ss_pred CEEEEEEEECCCHH------------HHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECCC
T ss_conf 44689999404777------------754306589999998569998999874246444697888751378516874246
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECC----CC------C-------CCCCCCCCCCCEEEEEEEE------ECCEEEEEEE
Q ss_conf 7876503568861464101000012----21------4-------6756554457504999998------4997899999
Q gi|254780797|r 81 TDKHAMHTAIVIRKGAIHLLQKSYL----PM------D-------TEGLDSKAGKRRAVEILFE------VDGRKIWLLD 137 (231)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~----~~------~-------~~~~~~~~~~r~~~~~~~~------~~g~~~~v~n 137 (231)
...+...++++++............ .. . ..........| .+.+.+. .+...++|+|
T Consensus 216 ~kkgysGvAi~sK~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~egR-~~~~~~~~~~~~~~~~~~~~l~n 294 (467)
T 2j63_A 216 FKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGR-VLTTFLSPDPDSASSSSRIALVN 294 (467)
T ss_dssp SSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCC-EEEEEECSSCCC----CCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCEEEEE
T ss_conf 65530408999817764334331111254456766544444433356555665552-58998415653334458889998
Q ss_pred EEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHH-----------HCCCCCCEEEEEECCCCCC
Q ss_conf 75116888875430025457-8875489999999997-----------4048878999913688846
Q gi|254780797|r 138 IHLKSFCFLDSIEDSYISSC-YMLNLQATWLKQWVDQ-----------KNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 138 ~HL~s~~~~~~~~~~~~~~~-~~~~~q~~~l~~~i~~-----------~~~~~~~vii~GDFN~~~~ 192 (231)
+|++...........+...+ ..+...++.|..+... ....+.++|||||||..+.
T Consensus 295 ~y~pn~~~~~~~~~~r~~~~d~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~vIl~GDfNv~~~ 361 (467)
T 2j63_A 295 TYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAER 361 (467)
T ss_dssp EECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCS
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 6467765542026778899999999999999886653101101344555225774687244355752
No 10
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.76 E-value=1.3e-16 Score=105.80 Aligned_cols=143 Identities=16% Similarity=0.065 Sum_probs=85.3
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK 83 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
+.+|||+||||+. .....+.+...|.+.+|||+||||+...... .......+..+... ....
T Consensus 17 g~~~rvl~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~-~~~~~~~~~~~~~~-~~~~ 78 (245)
T 1wdu_A 17 GPPYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGAK-SMKGFRGVRVFQST-AQGD 78 (245)
T ss_dssp -CCEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECC-CCTT
T ss_pred CCCEEEEEECCCC----------------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHCCCCEEEEEE-CCCC
T ss_conf 9987999220499----------------7567999999998629988999869867665-10104553147744-5679
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231)
.....+++++.+........ .......+.+.+..++..+.++++|++...... . .
T Consensus 79 ~~~g~ai~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~-----------~---~ 133 (245)
T 1wdu_A 79 GTVKAAIAVFDHDLDVIQYP-----------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIE-----------S---Y 133 (245)
T ss_dssp CCCCEEEEECCSSCEEEECT-----------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCSH-----------H---H
T ss_pred CCCEEEEEEECCCCCCEEEC-----------CCCCCCEEEEEEEECCEEEEEEEEECCCCCCHH-----------H---H
T ss_conf 98489999946765521303-----------779899689999928932999999669996278-----------9---9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 9999999997404887899991368884
Q gi|254780797|r 164 ATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231)
Q Consensus 164 ~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231)
.+++...+. ...+.++|||||||...
T Consensus 134 ~~~l~~~~~--~~~~~~~Il~GDfN~~~ 159 (245)
T 1wdu_A 134 LEQIKRVER--KMGPKRLIFGGDANAKS 159 (245)
T ss_dssp HHHHHHHHH--TTCSSSEEEEEECCCCC
T ss_pred HHHHHHHHH--HCCCCEEEEEEECCCCC
T ss_conf 999999887--54796499973435365
No 11
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.76 E-value=4.9e-17 Score=108.12 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=80.9
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 65489988731007677755666766668799999999999751898999972799889998726232216774035787
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSNTDK 83 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
...|||+||||+.+ +...+...|.++|++.+|||+||||+.....-........+.+++... ...
T Consensus 5 ~~~lki~t~Ni~g~--------------~~~~~~~~i~~~i~~~~pDIi~LQEt~~~~~~~~~~~~~~~~~~~~~~-~~~ 69 (238)
T 1vyb_A 5 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQAN-GKQ 69 (238)
T ss_dssp CCCEEEEEEECSCC--------------CSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEEC-CSS
T ss_pred CCCCEEEEEECCCC--------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEEEE-CCC
T ss_conf 88889999988884--------------123446799999986699299998364662445311110343066441-036
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65035688614641010000122146756554457504999998499789999975116888875430025457887548
Q gi|254780797|r 84 HAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQ 163 (231)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q 163 (231)
.....+++++.......... .. ........+.+..++..+.++|+|++... . . +
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~i~~vy~~~~~-------~-~-----~--- 123 (238)
T 1vyb_A 70 KKAGVAILVSDKTDFKPTKI--KR--------DKEGHYIMVKGSIQQEELTILNIYAPNTG-------A-P-----R--- 123 (238)
T ss_dssp SSCCEEEEECTTCCCEEEEE--EE--------CTTSSEEEEEEEETTEEEEEEEEECCSSS-------H-H-----H---
T ss_pred CCCCEEEEEEECCCEECCCC--CC--------CCCCCEEEEEEEECCCEEEEEEECCCCCH-------H-H-----H---
T ss_conf 74555899750231001564--45--------75554023688505744999962376302-------4-7-----7---
Q ss_pred HHHHHHHHHH-HCCCCCCEEEEEECCCCCC
Q ss_conf 9999999997-4048878999913688846
Q gi|254780797|r 164 ATWLKQWVDQ-KNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 164 ~~~l~~~i~~-~~~~~~~vii~GDFN~~~~ 192 (231)
...+++.. ......++||+||||....
T Consensus 124 --~~~~~~~~~~~~~~~~~il~GDfN~~~~ 151 (238)
T 1vyb_A 124 --FIKQVLSDLQRDLDSHTLIMGDFNTPLS 151 (238)
T ss_dssp --HHHHHHHHTTTTCCTTEEEEEECSSCSS
T ss_pred --HHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf --8888899998630365011010046874
No 12
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.71 E-value=3e-17 Score=109.23 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH----CC--CCCEEEEE
Q ss_conf 6548998873100767775566676666879999999999975189899997279988999872----62--32216774
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVF----PN--DKWDILYS 77 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~----~~--~~~~~~~~ 77 (231)
.+.+||+||||+++..... .+...++ ...++...+|||||||||.+........ .. ..+..+..
T Consensus 2 ~~~frv~TwNi~~~~~~~~--------~~~~~~~--~~~~~~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (261)
T 1sr4_B 2 LSDFKVATWNLQGSSAVNE--------SKWNINV--RQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTW 71 (261)
T ss_dssp GGGSCEEEEECCCCSSSSH--------HHHHHHH--HHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEE
T ss_pred CCCCEEEEEECCCCCCCCC--------CCCCHHH--HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 9877899997995878755--------5422899--99997567979999991674234115688776641765330122
Q ss_pred ECCCCCCCCEEEEEEECCCC-----EEEEEECCCC----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCC
Q ss_conf 03578765035688614641-----0100001221----46756554457504999998499789999975116888875
Q gi|254780797|r 78 GSNTDKHAMHTAIVIRKGAI-----HLLQKSYLPM----DTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDS 148 (231)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~ 148 (231)
............++...... ........+. ...........|.++.+.+. ...++++|+.+....+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ils~~~~~~~~~~~~~~~~~~~R~~~~~~~~----~~~~~~~~~~~~~~~~~ 147 (261)
T 1sr4_B 72 NLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIG----TDVFFTVHALATGGSDA 147 (261)
T ss_dssp ESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEEEET----TEEEEEEECCTTTTTTH
T ss_pred ECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEE----CCCEEEEEEECCCCCCC
T ss_conf 02565677515899752345564243799979876333783689766565305999981----35223388645887534
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 430025457887548999999999740488789999136888462
Q gi|254780797|r 149 IEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 149 ~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~ 193 (231)
.. ....+......+.......+.|+|+|||||..+.+
T Consensus 148 -----~~---~~~~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~ 184 (261)
T 1sr4_B 148 -----VS---LIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp -----HH---HHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH
T ss_pred -----HH---HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
T ss_conf -----89---99999999999998752568876984345887521
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.70 E-value=8.3e-16 Score=101.55 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=86.9
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 899887310076777556667666687999999999997518989999727998--899987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+.+ + ++...+.++|+..+||||||||+... ......+...+|.+.+.... .
T Consensus 1 Mki~s~NvnGi------------r----~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~---~ 61 (268)
T 1ako_A 1 MKFVSFNINGL------------R----ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQK---G 61 (268)
T ss_dssp CEEEEEECSCG------------G----GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEET---T
T ss_pred CEEEEEEHHHH------------H----HHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCC---C
T ss_conf 98999972318------------8----759889999987899899998332890018988897559646424754---6
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
....+......+...... .....................+.+.++++|...+...... .....+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~k~~~~ 129 (268)
T 1ako_A 62 HYGVALLTKETPIAVRRG-------FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP-----IKFPAKAQFY 129 (268)
T ss_dssp EEEEEEEESSCCSEEEES-------STTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT-----THHHHHHHHH
T ss_pred CCCCEEEECCCCHHHCCC-------CCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHH-----HHHHHHHHHH
T ss_conf 666226512352331048-------7633322223101100012358778887641688642200-----2137899999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 9999999974048878999913688846
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231)
+.+...+....+.+.++|+|||||..+.
T Consensus 130 ~~~~~~~~~~~~~~~~~il~GdfN~~~~ 157 (268)
T 1ako_A 130 QNLQNYLETELKRDNPVLIMGDMNISPT 157 (268)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECCCCCS
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 9999999998737997686345234841
No 14
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.69 E-value=7.4e-17 Score=107.13 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHH----CC--CCCEEEE
Q ss_conf 6548998873100767775566676666879999999999975-189899997279988999872----62--3221677
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQ-LDADIVCLQEIGSYEAIKRVF----PN--DKWDILY 76 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-~~~DVi~LQEv~~~~~~~~~~----~~--~~~~~~~ 76 (231)
.+.|||+||||+++..... ......+...+.. .+|||||||||.+........ .. ..+..+.
T Consensus 13 ~~~lri~TwNv~~~~~~~~-----------~~~~~~~~~~i~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2f1n_A 13 LTDFRVATWNLQGASATTE-----------SKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELI 81 (262)
T ss_dssp GGGCCEEEEEEEECTTSCH-----------HHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCCCC-----------CCHHHHHHHHHHHCCCCCEEEEECCCCHHCCCHHHHHHHHCCCCCHHHHH
T ss_conf 8762999984896778765-----------53589999999737898999997478610230566655402465245543
Q ss_pred EECCCC--------------CCCCEEE--EEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEE
Q ss_conf 403578--------------7650356--886146410100001221467565544575049999984997899999751
Q gi|254780797|r 77 SGSNTD--------------KHAMHTA--IVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHL 140 (231)
Q Consensus 77 ~~~~~~--------------~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL 140 (231)
...... ......| ++++....... .........+....+.+ ..+.++++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ilsk~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~Hl 148 (262)
T 2f1n_A 82 WNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVF---------VLSPVRQGGRPLLGIRI----GNDAFFTAHA 148 (262)
T ss_dssp EECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEE---------EECCSSTTCCCEEEEEE----TTEEEEEEEC
T ss_pred HCCCCCCCCCEEEEEEECCCCCCCEECCEEEECCCCCCCE---------ECCCCCCCCCEEEEEEE----CCCEEEEEEC
T ss_conf 1111124772478986313444634122899765610032---------20787656743578871----7726999973
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHH
Q ss_conf 16888875430025457887548999999999740488789999136888462222227677
Q gi|254780797|r 141 KSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDEL 202 (231)
Q Consensus 141 ~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~~~~~~~~ 202 (231)
++....+.. ....+...+.........++.|+|+|||||..+.+........+
T Consensus 149 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~~~~~~~~ 201 (262)
T 2f1n_A 149 IAMRNNDAP---------ALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPV 201 (262)
T ss_dssp CSSSSCSHH---------HHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTSCHHH
T ss_pred CCCCCCCHH---------HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 788873089---------99999999999998853679975734764657156777665343
No 15
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=111.04 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=76.7
Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCC--EEEEECCCCHHH-------------HHHHH-
Q ss_conf 48998873100767775566676666879999999999975--1898--999972799889-------------99872-
Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQ--LDAD--IVCLQEIGSYEA-------------IKRVF- 67 (231)
Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~D--Vi~LQEv~~~~~-------------~~~~~- 67 (231)
+|.|+||||+...++.. +..++.. .+|| ||||||+..... ...+.
T Consensus 9 ~i~v~TWNVng~~~~~~-----------------l~~~l~~~~~~~DI~vi~lQE~k~~~~~~~~~~~~~~~~~~~~~~~ 71 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPKEC-----------------LRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSE 71 (313)
T ss_dssp EEEEEEEECTTCCCCSC-----------------THHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCCCH-----------------HHHHHCCCCCCCCEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999997599477613-----------------7887525676899289978679778242563203455579999986
Q ss_pred -CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCC
Q ss_conf -6232216774035787650356886146410100001221467565544575049999984997899999751168888
Q gi|254780797|r 68 -PNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFL 146 (231)
Q Consensus 68 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~ 146 (231)
......|.. .......+....++++.................+.......++++.+.+..++..+.++|+||+++...
T Consensus 72 ~~~~~~~y~~-~~~~~~~g~~~~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kg~~~~~~~i~~~~~~~in~hl~~~~~~ 150 (313)
T 3mtc_A 72 GLHPDAKYAK-VKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE 150 (313)
T ss_dssp HSCTTSCEEE-EEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred HHCCCCCEEE-EEEEEECEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCC
T ss_conf 3057875898-767852316999998166566434566642544788766888519999999999999999626888873
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH----------HHHCCCCCCEEEEEECCCCCCC
Q ss_conf 7543002545788754899999999----------9740488789999136888462
Q gi|254780797|r 147 DSIEDSYISSCYMLNLQATWLKQWV----------DQKNNLNMPFIIAGDFNRKINH 193 (231)
Q Consensus 147 ~~~~~~~~~~~~~~~~q~~~l~~~i----------~~~~~~~~~vii~GDFN~~~~~ 193 (231)
. ..|..+...+...+ ......+.++|+|||||.++..
T Consensus 151 ~----------~~r~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~vi~~GD~N~~~~~ 197 (313)
T 3mtc_A 151 Y----------ERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEE 197 (313)
T ss_dssp H----------HHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCS
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 0----------4435508998876655566666556652269869995234424565
No 16
>3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=108.76 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=83.4
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCH--HHHHHH---HCCCCCEEEEEEC
Q ss_conf 899887310076777556667666687999999999997518989--999727998--899987---2623221677403
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADI--VCLQEIGSY--EAIKRV---FPNDKWDILYSGS 79 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DV--i~LQEv~~~--~~~~~~---~~~~~~~~~~~~~ 79 (231)
+.|+||||+...++.....+-.... ..+.+...+...+||| +||||+... .+...+ +....+..+....
T Consensus 10 v~i~TwNvng~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~DI~vi~lQE~k~~~~~~~~~~~~~l~~~~~~~y~~~~ 85 (316)
T 3nr8_B 10 VFIGTWNMGSVPPPKNVTSWFTSKG----LGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIA 85 (316)
T ss_dssp EEEEEECCCSSCCCSCCHHHHTTCS----EEECCC---CCCCCSEEEEEESSCCSCHHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHH----HCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9999995599607502565530232----021055553036998499968559876788999999976212554279976
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 57876503568861464101000012214675655445750499999849978999997511688887543002545788
Q gi|254780797|r 80 NTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYM 159 (231)
Q Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~ 159 (231)
.....+...+++++.................+.......++++.+++..++..+.++|+||+++..... .
T Consensus 86 ~~~~~g~~~~vf~r~~~~~~i~~v~~~~~~~G~~~~~~nkg~v~i~~~~~~~~i~~vn~hl~~g~~~~~----------~ 155 (316)
T 3nr8_B 86 MQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTA----------R 155 (316)
T ss_dssp EEEETTEEEEEEECGGGGGGEEEEEEEEEECC------CCEEEEEEEEETTEEEEEEEEECCCSTTCHH----------H
T ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCHH----------H
T ss_conf 213232379999616445644431332122388877688733999999899889999965667886077----------7
Q ss_pred HHHHHHHHHHHH---------HHHCCCCCCEEEEEECCCCCC
Q ss_conf 754899999999---------974048878999913688846
Q gi|254780797|r 160 LNLQATWLKQWV---------DQKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 160 ~~~q~~~l~~~i---------~~~~~~~~~vii~GDFN~~~~ 192 (231)
|..+...+.+.+ ......+.++|+|||||-++.
T Consensus 156 r~~~~~~i~~~l~~~~~~~~~~~~~~~~~~vi~~GDlN~r~~ 197 (316)
T 3nr8_B 156 RNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD 197 (316)
T ss_dssp HHHHHHHHHHHCCC----CTTTCSSSSSSEEEEEEECCCCBS
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 888899999965224122121001124582799665202246
No 17
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.66 E-value=1.5e-15 Score=100.16 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=85.6
Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCE--EEEECCCC--------------H---HHH
Q ss_conf 489988731007677755666766668799999999999---7518989--99972799--------------8---899
Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYA---EQLDADI--VCLQEIGS--------------Y---EAI 63 (231)
Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~~~~DV--i~LQEv~~--------------~---~~~ 63 (231)
+|.|+||||+...++. + +.+++ ....||| |||||+.. . ..+
T Consensus 26 ~I~v~TWNVng~~~~~--------------~---l~~~l~~~~~~~~DI~viglQEi~~l~~~~~~~~~~~~~~~w~~~~ 88 (347)
T 1i9z_A 26 KIFVASYNLNGCSATT--------------K---LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCV 88 (347)
T ss_dssp EEEEEEEECTTCCCCS--------------C---CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCC--------------C---HHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHH
T ss_conf 9999998069973871--------------6---7877366789999999998401763613343136733567899999
Q ss_pred HHHHC---CCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEE
Q ss_conf 98726---232216774035787650356886146410100001221467565544575049999984997899999751
Q gi|254780797|r 64 KRVFP---NDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHL 140 (231)
Q Consensus 64 ~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL 140 (231)
...+. ..+..|..... ....+....++++.+...............+.....+.++++.+++...+..++++|+||
T Consensus 89 ~~~~~~~~~~~~~Y~~v~~-~~~~g~~l~vf~r~~~~~~i~~v~~~~v~~g~~g~~gnKGaV~i~~~i~~~~l~fvn~HL 167 (347)
T 1i9z_A 89 KRLLNGKCTSGPGYVQLRS-GQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHL 167 (347)
T ss_dssp HHHHHHTCCSSCCEEEEEE-EEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEEC
T ss_pred HHHHHHHCCCCCCEEEEEE-CCCCCEEEEEEEECHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEECCC
T ss_conf 9974141157998799985-040323999999865762577311108982568712785269999999899999997067
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCEEEEEECCCCCC
Q ss_conf 16888875430025457887548999999999----74048878999913688846
Q gi|254780797|r 141 KSFCFLDSIEDSYISSCYMLNLQATWLKQWVD----QKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 141 ~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~----~~~~~~~~vii~GDFN~~~~ 192 (231)
+++.... ..|..+...+.+.+. .......++|++||||-+..
T Consensus 168 ~ag~~~~----------~~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~r~~ 213 (347)
T 1i9z_A 168 AAGYTNY----------DERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRIS 213 (347)
T ss_dssp CCCSSCH----------HHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBS
T ss_pred CCCCCHH----------HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 8776328----------889988999999732345544457753687436441101
No 18
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.63 E-value=6.2e-15 Score=96.92 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=84.6
Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HHCCCC--EEEEECCCC--HHHHHHHHCCCCCEEEEE
Q ss_conf 489988731007677755666766668799999999999----751898--999972799--889998726232216774
Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYA----EQLDAD--IVCLQEIGS--YEAIKRVFPNDKWDILYS 77 (231)
Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i----~~~~~D--Vi~LQEv~~--~~~~~~~~~~~~~~~~~~ 77 (231)
+|-|+||||+.-.+.+ . .+.+++ ....|| ||||||+.. ..+...+....++.|...
T Consensus 27 ~I~v~TWNvng~~~~~------~----------~l~~~l~~~~~~~~~DI~viglQE~~~~~~~w~~~i~~~lg~~Y~~v 90 (357)
T 2xsw_A 27 ALFVATWNMQGQKELP------P----------SLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLL 90 (357)
T ss_dssp EEEEEEEECTTCSSCC------S----------CCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEE
T ss_pred EEEEEEECCCCCCCCC------H----------HHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999988169866880------6----------58987356777779997999734288658899999999729894999
Q ss_pred ECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 03578765035688614641010000122146756554457504999998499789999975116888875430025457
Q gi|254780797|r 78 GSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSC 157 (231)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~ 157 (231)
.. ....+....++++..............-..+.....+.++++.+.+...+..++++|+||+++....
T Consensus 91 ~~-~~~~gi~l~Vfvr~~~~~~v~~v~~~~v~~G~~g~~gnKG~v~i~~~l~~~~l~fvn~HL~ag~~~~---------- 159 (357)
T 2xsw_A 91 SS-AAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKV---------- 159 (357)
T ss_dssp EE-EEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTCH----------
T ss_pred EE-EEECCEEEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCHH----------
T ss_conf 99-8300129999997565522676642367217788878885399999999878999999638998417----------
Q ss_pred HHHHHHHHHHHHHHH----------------HHCCCCCCEEEEEECCCCCC
Q ss_conf 887548999999999----------------74048878999913688846
Q gi|254780797|r 158 YMLNLQATWLKQWVD----------------QKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 158 ~~~~~q~~~l~~~i~----------------~~~~~~~~vii~GDFN~~~~ 192 (231)
..|......+...+. ........+|++||||-++.
T Consensus 160 ~~R~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlN~Ri~ 210 (357)
T 2xsw_A 160 AERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp HHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 888887988887512565554211001222222135762577477786766
No 19
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=99.59 E-value=3.4e-14 Score=92.95 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=67.8
Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCC
Q ss_conf 548998873100767775566676666879999-9999999751898999972799--8899987262322167740357
Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDY-ALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNT 81 (231)
Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
.+|||+||||+.+. ..+ +.+.++|++.+||||||||+.. ......+....+|.+.+.....
T Consensus 60 ~~mki~swNvnGlr----------------~~~k~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~l~~~~g~~~~y~~~~~ 123 (318)
T 1hd7_A 60 ATLKICSWNVDGLR----------------AWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 123 (318)
T ss_dssp CCEEEEEEECSSHH----------------HHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-
T ss_pred CCEEEEEEECCCHH----------------HHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEEC
T ss_conf 87699999838857----------------61134489999758995899983537801288888951799648999755
Q ss_pred CCCCCE-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 876503-5688614641010000122146756554457504999998499789999975116888875430025457887
Q gi|254780797|r 82 DKHAMH-TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYML 160 (231)
Q Consensus 82 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~ 160 (231)
...+.. .+++++..+...... . ..... ... .........+..+..+.++.... . ......+
T Consensus 124 ~~~~~~~~~~~~k~~~~~v~~~--~----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 185 (318)
T 1hd7_A 124 DKEGYSGVGLLSRQCPLKVSYG--I----GDEEH--DQE-GRVIVAEFDSFVLVTAYVPNAGR--G-------LVRLEYR 185 (318)
T ss_dssp ----CCCEEEEESSCCSEEEES--C----SCGGG--SSS-SCEEEEECSSCEEEEEECCCCCG--G-------GTTHHHH
T ss_pred CCCCCCCEEEEECCCCEEEEEC--C----CCCCC--CCE-EEEEEEEEEEEEEEEEEECCCCC--C-------CHHHHHH
T ss_conf 8777552235732686146743--6----76654--530-05899874359999997146777--5-------3107888
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 548999999999740488789999136888
Q gi|254780797|r 161 NLQATWLKQWVDQKNNLNMPFIIAGDFNRK 190 (231)
Q Consensus 161 ~~q~~~l~~~i~~~~~~~~~vii~GDFN~~ 190 (231)
............ ......++|++||||..
T Consensus 186 ~~~~~~~~~~~~-~~~~~~~~i~~Gd~N~~ 214 (318)
T 1hd7_A 186 QRWDEAFRKFLK-GLASRKPLVLCGDLNVA 214 (318)
T ss_dssp HHHHHHHHHHHH-HHHHHSCEEEEEECSCC
T ss_pred HHHHHHHHHHHH-HHCCCCEEEEECCCCCC
T ss_conf 887777553233-20464338860444458
No 20
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.58 E-value=1.7e-13 Score=89.19 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=78.0
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 89988731007677755666766668799999999999751898999972799--8899987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+++ .++++.+.++|++.+||||||||+.. ...........++.+.+... ..
T Consensus 1 mKi~T~Nvng~----------------r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~---~~ 61 (256)
T 2jc4_A 1 MKITTWNVNSL----------------NVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQ---KT 61 (256)
T ss_dssp CEEEEEECSCH----------------HHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECC---SS
T ss_pred CEEEEEEECCH----------------HHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCC---CC
T ss_conf 98999981779----------------999999999998489989999865558000897897212671354165---45
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
....++........... .... .......| .. .....+ ..++++|+.++....... ...+....
T Consensus 62 ~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (256)
T 2jc4_A 62 YNGVAIVSRSVPQDVHF-GLPA-----LPDDPQRR-VI--AATVSG--VRVINVYCVNGEALDSPK------FKYKEQWF 124 (256)
T ss_dssp SCCEEEEESSCCEEEEE-SCTT-----STTCCSCC-EE--EEEETT--EEEEEEECCCCCSTTSHH------HHHHHHHH
T ss_pred CCCCEEEEEECCCCCCC-CCCC-----CCCCCCCE-EE--EEECCC--EEEEEEECCCCCCCCHHH------HHHHHHHH
T ss_conf 55732788406641112-4688-----87775515-99--985087--799999756998764277------99999999
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 9999999974048878999913688846
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231)
..+.+...+....+.+++++||||....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~gd~n~~~~ 152 (256)
T 2jc4_A 125 AALTEFVRDEMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEECCCCCS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9999888876224887430343235864
No 21
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.52 E-value=1.3e-13 Score=89.82 Aligned_cols=157 Identities=12% Similarity=0.143 Sum_probs=80.2
Q ss_pred EEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCH--------HHH---HHHHCCCCC
Q ss_conf 4899887310076777556667666687999999999997518989--999727998--------899---987262322
Q gi|254780797|r 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADI--VCLQEIGSY--------EAI---KRVFPNDKW 72 (231)
Q Consensus 6 ~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DV--i~LQEv~~~--------~~~---~~~~~~~~~ 72 (231)
+|+|+||||+...++ .++..+...+...+||| +||||+... ..+ ...+...+|
T Consensus 8 ~v~i~TWNvn~~~~~--------------~~l~~~l~~~~~~~pDI~vi~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~Y 73 (282)
T 2imq_X 8 SVHTVSWNSGHERAP--------------TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGY 73 (282)
T ss_dssp EEEEEEEEEETCCCC--------------SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTE
T ss_pred EEEEEEECCCCCCCC--------------CCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 799999837997076--------------188988575656898989998570883603452227999999987167864
Q ss_pred EEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCH
Q ss_conf 16774035787650356886146410100001221467565544575049999984997899999751168888754300
Q gi|254780797|r 73 DILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDS 152 (231)
Q Consensus 73 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~ 152 (231)
........ .+ .+++++.........................++++.+.+...+..+.++|.||.++........
T Consensus 74 ~~v~~~~~---~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nkG~v~i~~~~~~~~~~~vn~hl~~~~~~~~~r~- 147 (282)
T 2imq_X 74 TKLKNTIT---ET--MGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTK- 147 (282)
T ss_dssp EEEEEEEC---SS--EEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSS-
T ss_pred EEEEEEEC---CC--CEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHH-
T ss_conf 89998503---56--3169984155344434743357621430026742999961389341454654543017999998-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 2545788754899999999974048878999913688846
Q gi|254780797|r 153 YISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKIN 192 (231)
Q Consensus 153 ~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~ 192 (231)
.... +..........+..+|++||||.++.
T Consensus 148 ~~~~----------~~~~~~~~~~~~d~~i~~GDlN~r~~ 177 (282)
T 2imq_X 148 YAYD----------TRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp SSCC----------GGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred HHHH----------HHHHCCCCCCCCCEEECCCCCCCCCC
T ss_conf 9998----------76510345777874674366554434
No 22
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.51 E-value=5.1e-13 Score=86.69 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=70.9
Q ss_pred CCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCC
Q ss_conf 65489988731007677755666766668799999999999751898999972799--8899987262322167740357
Q gi|254780797|r 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNT 81 (231)
Q Consensus 4 ~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
..+|||+||||+.+. . ..-+.+.++|++.+||||||||+.. ......+....+|.+.......
T Consensus 26 ~~~mkiiSwNvnGlr--------------~-~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (285)
T 2o3h_A 26 PATLKIASWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 90 (285)
T ss_dssp BCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC
T ss_pred CCCEEEEEEECCCHH--------------H-HHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCC
T ss_conf 996799999817877--------------7-3233589999757997999997547811188868615787445541135
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 87650356886146410100001221467565544575049999984997899999751168888754300254578875
Q gi|254780797|r 82 DKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLN 161 (231)
Q Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~ 161 (231)
...+...+..+................ .... .........+..+..++++....... ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 153 (285)
T 2o3h_A 91 DKEGYSGVGLLSRQCPLKVSYGIGDEE-------HDQE-GRVIVAEFDSFVLVTAYVPNAGRGLV---------RLEYRQ 153 (285)
T ss_dssp --CCSCCEEEEESSCCSEEEESCSCGG-------GSSB-CCEEEEECSSCEEEEEECCCCCGGGT---------THHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCC-------CCCC-CEEEEEEECCEEEEEEEECCCCCCCC---------CHHHHH
T ss_conf 566544312324668605663578774-------4433-21899983544999997046777520---------067888
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 48999999999740488789999136888
Q gi|254780797|r 162 LQATWLKQWVDQKNNLNMPFIIAGDFNRK 190 (231)
Q Consensus 162 ~q~~~l~~~i~~~~~~~~~vii~GDFN~~ 190 (231)
+................+++++||||..
T Consensus 154 -~~~~~~~~~~~~~~~~~~~i~~gd~n~~ 181 (285)
T 2o3h_A 154 -RWDEAFRKFLKGLASRKPLVLCGDLNVA 181 (285)
T ss_dssp -HHHHHHHHHHHHHHTTSCEEEEEECSCC
T ss_pred -HHHHHHHHHHHHHCCCCEEEEECCHHCC
T ss_conf -7756665544430465438970511128
No 23
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.49 E-value=3.9e-13 Score=87.33 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=76.1
Q ss_pred CCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEECC
Q ss_conf 98665489988731007677755666766668799999999999751898999972799889998726232216774035
Q gi|254780797|r 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKWDILYSGSN 80 (231)
Q Consensus 1 ~~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
|-+..+|||++||++.. ....+.|.++++..++||+||||... ..++...+
T Consensus 2 ~~~~~~LrI~~~N~~~~----------------~~~~~~l~~~~~~~~~DIv~lQE~~~---------~~~~~~~~---- 52 (240)
T 2ei9_A 2 MDIRPRLRIGQINLGGA----------------EDATRELPSIARDLGLDIVLVQEQYS---------MVGFLAQC---- 52 (240)
T ss_dssp ----CEEEEEEEECTTC----------------HHHHHTHHHHHHHHTCSEEEEESCCT---------TSSSEECC----
T ss_pred CCCCCCCEEEEEECCCC----------------HHHHHHHHHHHHHHCCCEEEEECCCC---------CCCCCCEE----
T ss_conf 87778368999807984----------------88999999999975999999965560---------78850224----
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 78765035688614641010000122146756554457504999998499789999975116888875430025457887
Q gi|254780797|r 81 TDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYML 160 (231)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~ 160 (231)
......|++++.+......... ..... .+.+..++..+.|+++|++......
T Consensus 53 --~~~~g~ai~v~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~~i~svY~pp~~~~~------------- 104 (240)
T 2ei9_A 53 --GAHPKAGVYIRNRVLPCAVLHH-----------LSSTH--ITVVHIGGWDLYMVSAYFQYSDPID------------- 104 (240)
T ss_dssp --SSSCSEEEEESSTTSCEEECGG-----------GCCSS--EEEEEETTTTEEEEEEECCTTSCSH-------------
T ss_pred --CCCCCEEEEEECCCCCCCCCCC-----------CCCCC--EEEEEECCEEEEEEEEECCCCCCHH-------------
T ss_conf --5899689999568755321014-----------78665--7999979928999999849798558-------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 548999999999740488789999136888
Q gi|254780797|r 161 NLQATWLKQWVDQKNNLNMPFIIAGDFNRK 190 (231)
Q Consensus 161 ~~q~~~l~~~i~~~~~~~~~vii~GDFN~~ 190 (231)
...+.+...+.. ..+.++||+||||..
T Consensus 105 -~~~~~l~~~~~~--~~~~~~ii~GDfN~~ 131 (240)
T 2ei9_A 105 -PYLHRLGNILDR--LRGARVVICADTNAH 131 (240)
T ss_dssp -HHHHHHHHHHHH--TTTSCEEEEEECCCC
T ss_pred -HHHHHHHHHHHH--CCCCCEEEECHHCCC
T ss_conf -999999999986--699966983011045
No 24
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.47 E-value=2.2e-12 Score=83.38 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=72.8
Q ss_pred CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCC
Q ss_conf 54899887310076777556667666687999999999997518989999727998--8999872623221677403578
Q gi|254780797|r 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTD 82 (231)
Q Consensus 5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
.-|||+||||+++ ++ .+.+.+.++|++.+|||||||||... ..........++.+.+... ..
T Consensus 2 ~~mki~SwNvngl--------------~~-~~~~~~~~~i~~~~pDIi~LQEvk~~~~~~~~~~~~~~~~~~~~~~~-~~ 65 (265)
T 3g91_A 2 AVLKIISWNVNGL--------------RA-VHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-ER 65 (265)
T ss_dssp CEEEEEEEECSCH--------------HH-HHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-SS
T ss_pred CCEEEEEEEECCH--------------HH-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEEEEC-CC
T ss_conf 8609999992428--------------88-77773999997589969998815078000898787247861688612-22
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 76503568861464101000012214675655445750499999849978999997511688887543002545788754
Q gi|254780797|r 83 KHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNL 162 (231)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~ 162 (231)
......+++...+...... .... . .. ...... .... ...+.+.++|+....... ........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~--~~~~----~-~~-~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 127 (265)
T 3g91_A 66 KGYSGVAMYTKVPPSSLRE--GFGV----E-RF-DTEGRI-QIAD--FDDFLLYNIYFPNGAMSE-------ERLKYKLE 127 (265)
T ss_dssp TTSCCEEEEESSCCSEEEC--CCSC----H-HH-HSBSCE-EEEE--CSSCEEEEEECCCCTTCH-------HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCC--CCCC----C-CC-CCHHEE-EEEE--CCCEEEEEEECCCCCCCC-------HHHHHHHH
T ss_conf 3224347863267520003--7887----6-53-402046-7552--298899999605886431-------12577889
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 89999999997404887899991368884
Q gi|254780797|r 163 QATWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231)
Q Consensus 163 q~~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231)
....+..........+.+.+++||||...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (265)
T 3g91_A 128 FYDAFLEDVNRERDSGRNVIICGDFNTAH 156 (265)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 99999999999854678467206510287
No 25
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.40 E-value=5.7e-12 Score=81.13 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=66.4
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 89988731007677755666766668799999999999751898999972799--8899987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+.+ + ++.+.+.++|++.+|||||||||.. .......+...++.+..... ..
T Consensus 2 mKI~T~NvnG~------------r----~r~~~~~~~i~~~~pDIi~lQEvk~~~~~~~~~~~~~~~~~~~~~~~---~~ 62 (257)
T 2voa_A 2 LKIATFNVNSI------------R----SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGS---KG 62 (257)
T ss_dssp EEEEEEECSCG------------G----GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEEE---TT
T ss_pred EEEEEEEECHH------------H----HHHHHHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCEEEECCC---CC
T ss_conf 19999980529------------9----86998899998689969999967669244788787313631465034---77
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r 85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA 164 (231)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~ 164 (231)
....++..+..+.... .... .......+. ..... ..+.++++|+.......... ........
T Consensus 63 ~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (257)
T 2voa_A 63 RNGVAIASLEEPEDVS--FGLD-----SEPKDEDRL---IRAKI--AGIDVINTYVPQGFKIDSEK------YQYKLQWL 124 (257)
T ss_dssp EEEEEEEESSCCEEEE--ESCS-----SSSCCGGGE---EEEEE--TTEEEEEEECCCCSCTTSHH------HHHHHHHH
T ss_pred CCCCEEEECCCCEEEE--ECCC-----CCCCCCCEE---EEEEE--CCEEEEEEEEECCCCCCHHH------HHHHHHHH
T ss_conf 6661133047850588--4242-----123566458---99872--67599999830687797688------88888778
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 999999997404887899991368884
Q gi|254780797|r 165 TWLKQWVDQKNNLNMPFIIAGDFNRKI 191 (231)
Q Consensus 165 ~~l~~~i~~~~~~~~~vii~GDFN~~~ 191 (231)
...............+++++||||...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (257)
T 2voa_A 125 ERLYHYLQKTVDFRSFAVWCGDMNVAP 151 (257)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECSCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999998664202323333101384
No 26
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.17 E-value=1.7e-09 Score=67.95 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=40.3
Q ss_pred EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HH-HHHHCCCCCEEEEEECCCCCC
Q ss_conf 8998873100767775566676666879999999999975189899997279988-99-987262322167740357876
Q gi|254780797|r 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYE-AI-KRVFPNDKWDILYSGSNTDKH 84 (231)
Q Consensus 7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 84 (231)
|||+||||+.+ +. +.-+.+.++|++.+|||||||||.... .+ ........+ ...........
T Consensus 2 mki~swNv~G~--------------~~-~~~~~~~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 65 (259)
T 2jc5_A 2 LKIISANVNGI--------------RS-AYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGM-HGHWHCAEKRG 65 (259)
T ss_dssp EEEEEEECSSH--------------HH-HHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGC-EEEEECCSSTT
T ss_pred EEEEEEECCCH--------------HH-HHHCHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCC-CEEEEECCCCC
T ss_conf 19999983467--------------77-5663099999867999999973616811078878615576-03552023576
Q ss_pred CCEEEEEEECCCC
Q ss_conf 5035688614641
Q gi|254780797|r 85 AMHTAIVIRKGAI 97 (231)
Q Consensus 85 ~~~~g~~~~~~~~ 97 (231)
....++.++.+..
T Consensus 66 ~~~~~~~sr~~~~ 78 (259)
T 2jc5_A 66 YSGVAVYSKRKPD 78 (259)
T ss_dssp CCCEEEEESSCCS
T ss_pred CCEEEEEECCCCE
T ss_conf 5058998437863
No 27
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=84.73 E-value=1.1 Score=20.97 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.9
Q ss_pred CCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---C--CCCEEEEECCC
Q ss_conf 866548998873100767775566676666879999999999975---1--89899997279
Q gi|254780797|r 2 ILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQ---L--DADIVCLQEIG 58 (231)
Q Consensus 2 ~~~~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~---~--~~DVi~LQEv~ 58 (231)
+|+++|||+.-.+.- .....+.+++.+.+.|.+ . ++|+|++.|..
T Consensus 6 ~~~~~~kiAl~Q~~~------------~~~d~~~N~~~i~~~i~~A~~~~~gadlvvfPE~~ 55 (291)
T 1f89_A 6 ILSQKIKVALVQLSG------------SSPDKMANLQRAATFIERAMKEQPDTKLVVLPECF 55 (291)
T ss_dssp SBSSCEEEEEEECCC------------CCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTT
T ss_pred HHHCCCEEEEEECCC------------CCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 200675699995758------------87799999999999999998449989899877865
No 28
>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=28.14 E-value=24 Score=13.89 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 879999999999975--189899997279
Q gi|254780797|r 32 REDNDYALLQKYAEQ--LDADIVCLQEIG 58 (231)
Q Consensus 32 ~~~~~~~~i~~~i~~--~~~DVi~LQEv~ 58 (231)
..+.+++.+.+.+++ .++|+|+|.|..
T Consensus 17 d~~~Nl~~i~~~i~~a~~~~dlvv~PE~~ 45 (266)
T 2e11_A 17 DPAGNRDYYGALLEPLAGQSDLVILPETF 45 (266)
T ss_dssp CHHHHHHHHHHHHGGGTTTCSEEECCTTT
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 99999999999999973899899968874
No 29
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initiative, midwest center for structural genomics, PSI, MCSG; 2.40A {Aquifex aeolicus VF5} SCOP: d.159.1.8
Probab=27.29 E-value=25 Score=13.80 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=21.8
Q ss_pred EEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 99984997899999751168888754300254578875489999999997404887899991368
Q gi|254780797|r 124 ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFN 188 (231)
Q Consensus 124 ~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN 188 (231)
..+..+|+.+. -+|.+-......... ..-..+.+|... .+..+.|.|=.-
T Consensus 100 ~~~~~~g~~i~--lsHyP~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~ihGH~H 149 (195)
T 1xm7_A 100 KIIEHKGKRIL--LSHYPAKDPITERYP----------DRQEMVREIYFK---ENCDLLIHGHVH 149 (195)
T ss_dssp EEEEETTEEEE--EESSCSSCSSCCSCH----------HHHHHHHHHHHH---TTCSEEEECCCC
T ss_pred EEEEECCEEEE--EEECCCCCCCCCCCC----------CCCHHHHHHHHH---CCCEEEEECCCC
T ss_conf 25532996999--995686567543345----------430378888873---498599992278
No 30
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=26.97 E-value=19 Score=14.49 Aligned_cols=14 Identities=14% Similarity=-0.389 Sum_probs=11.5
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 88789999136888
Q gi|254780797|r 177 LNMPFIIAGDFNRK 190 (231)
Q Consensus 177 ~~~~vii~GDFN~~ 190 (231)
.+..|.|+|+||.|
T Consensus 180 ~~~~V~v~G~fn~W 193 (294)
T 3nme_A 180 GFSRVEISGLDIGW 193 (294)
T ss_dssp SCSCEEEEETTTEE
T ss_pred CCCEEEEEEEECCC
T ss_conf 99899998474898
No 31
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=24.60 E-value=28 Score=13.52 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=40.8
Q ss_pred CCCCCEEEEEEEEHHC--CCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEEEC-----------CCCHHHHHH
Q ss_conf 9866548998873100--7677755666766--668799999999999751898999972-----------799889998
Q gi|254780797|r 1 MILAQRIRIASWNINN--LSEKSGVALFKNS--VIREDNDYALLQKYAEQLDADIVCLQE-----------IGSYEAIKR 65 (231)
Q Consensus 1 ~~~~~~lrv~twNi~~--~~~~~~~~~~~~~--~~~~~~~~~~i~~~i~~~~~DVi~LQE-----------v~~~~~~~~ 65 (231)
|.+++.|+|+.-|=-| +.+.. .....+. ..---+++..+.+.+++.+++++.|-= +...+....
T Consensus 1 ~s~~~~itILhtnD~Hg~l~~~~-~~~~~~~~~~~GG~arlat~i~~~r~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~~~ 79 (509)
T 3ive_A 1 MSLAKDVTIIYTNDLHAHVEPYK-VPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKAIID 79 (509)
T ss_dssp ---CEEEEEEEECCCTTCCSCBC-CTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHTTTTHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCHHHHH
T ss_conf 98787899999843654642568-73024787664759999999999986396989997898877718887759989999
Q ss_pred HHCCCCCEEEEEE
Q ss_conf 7262322167740
Q gi|254780797|r 66 VFPNDKWDILYSG 78 (231)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (231)
.+...+|.....+
T Consensus 80 ~mn~~g~Da~~lG 92 (509)
T 3ive_A 80 IMNTMPFDAVTIG 92 (509)
T ss_dssp HHTTSCCSEECCC
T ss_pred HHHCCCCCEEEEC
T ss_conf 9874599899984
No 32
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=21.16 E-value=33 Score=13.14 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHH---HCCCCEEEEECCC
Q ss_conf 87999999999997---5189899997279
Q gi|254780797|r 32 REDNDYALLQKYAE---QLDADIVCLQEIG 58 (231)
Q Consensus 32 ~~~~~~~~i~~~i~---~~~~DVi~LQEv~ 58 (231)
..+++++.+.+.|+ ..++|+|+|.|..
T Consensus 16 ~~~~N~~~~~~~i~~A~~~gadlvvfPE~~ 45 (276)
T 2w1v_A 16 IKSDNLTRACSLVREAAKQGANIVSLPECF 45 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999999999999999998839699988786
Done!