HHSEARCH alignment of GI: 254780797 and SCOP domain: d1akoa_

Alignment
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.27  E-value=2.3e-10  Score=71.29  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=75.2

Q ss_pred             EEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf             899887310076777556667666687999999999997518989999727998--899987262322167740357876
Q gi|254780797|r    7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY--EAIKRVFPNDKWDILYSGSNTDKH   84 (231)
Q Consensus         7 lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~   84 (231)
                      |||+||||+++            +    .+.+.+.++|++.+|||||||||...  ......+...+|.+......... 
T Consensus         1 Mki~S~NvnG~------------r----~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   63 (268)
T d1akoa_           1 MKFVSFNINGL------------R----ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHY-   63 (268)
T ss_dssp             CEEEEEECSCG------------G----GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEE-
T ss_pred             CEEEEEEECCH------------H----HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCCC-
T ss_conf             98999980799------------9----849989999987799889998565681119988886569625531443443-


Q ss_pred             CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             50356886146410100001221467565544575049999984997899999751168888754300254578875489
Q gi|254780797|r   85 AMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQA  164 (231)
Q Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~~q~  164 (231)
                        ..+............      . .......................+.++..+...+........     ........
T Consensus        64 --~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  129 (268)
T d1akoa_          64 --GVALLTKETPIAVRR------G-FPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIK-----FPAKAQFY  129 (268)
T ss_dssp             --EEEEEESSCCSEEEE------S-STTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTH-----HHHHHHHH
T ss_pred             --CCCCCCCCCCHHCCC------C-CCCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHH-----HHHHHHHH
T ss_conf             --343211235400014------7-400112354321000000136874799831015786310023-----16778899


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             999999997404887899991368884
Q gi|254780797|r  165 TWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       165 ~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      ......+........+..+++++|...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (268)
T d1akoa_         130 QNLQNYLETELKRDNPVLIMGDMNISP  156 (268)
T ss_dssp             HHHHHHHHHHCCTTSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             999999998762388678874011376


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]