HHSEARCH alignment of GI: 254780797 and SCOP domain: d1hd7a_

Alignment
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50  E-value=4.7e-13  Score=85.64  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=70.2

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             5489988731007677755666766668799999999999751898999972799--88999872623221677403578
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS--YEAIKRVFPNDKWDILYSGSNTD   82 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~   82 (231)
                      .+|||+||||+.+              +. ..-+.+.++|+..+||||||||+..  .+....+....+|.+........
T Consensus        17 ~~mki~S~NvnGl--------------r~-~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (275)
T d1hd7a_          17 ATLKICSWNVDGL--------------RA-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSD   81 (275)
T ss_dssp             CCEEEEEEECSSH--------------HH-HHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC--
T ss_pred             CCEEEEEEEECCH--------------HH-HHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEECC
T ss_conf             7679999982568--------------76-13435899997589989998822058233888787165764356643202


Q ss_pred             CCCCE-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             76503-56886146410100001221467565544575049999984997899999751168888754300254578875
Q gi|254780797|r   83 KHAMH-TAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLN  161 (231)
Q Consensus        83 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~~~~~~~~~~~~~  161 (231)
                      ..+.. .+++.+..+..........        ....+ ............+....+|......       ....  .. 
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~-  142 (275)
T d1hd7a_          82 KEGYSGVGLLSRQCPLKVSYGIGDE--------EHDQE-GRVIVAEFDSFVLVTAYVPNAGRGL-------VRLE--YR-  142 (275)
T ss_dssp             ---CCCEEEEESSCCSEEEESCSCG--------GGSSS-SCEEEEECSSCEEEEEECCCCCGGG-------TTHH--HH-
T ss_pred             CCCCCCCCEECCCCCEEEEECCCCC--------CCHHH-HHEEEEEECCEEEEEEEEEECCCCC-------CCHH--HH-
T ss_conf             3333442012156860366423345--------30223-2112455313043102454046654-------1013--33-


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             489999999997404887899991368884
Q gi|254780797|r  162 LQATWLKQWVDQKNNLNMPFIIAGDFNRKI  191 (231)
Q Consensus       162 ~q~~~l~~~i~~~~~~~~~vii~GDFN~~~  191 (231)
                      .....+..........+.+++++||||...
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~  172 (275)
T d1hd7a_         143 QRWDEAFRKFLKGLASRKPLVLCGDLNVAH  172 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECSCCC
T ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             331002000010012477537611224572


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]