HHSEARCH alignment of GI: 254780797 and SCOP domain: d1sr4b_

Alignment
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.72  E-value=1.2e-17  Score=110.01  Aligned_cols=169  Identities=18%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             CEEEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH----HHHCCCC--CEEEEEE
Q ss_conf             548998873100767775566676666879999999999975189899997279988999----8726232--2167740
Q gi|254780797|r    5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK----RVFPNDK--WDILYSG   78 (231)
Q Consensus         5 ~~lrv~twNi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~DVi~LQEv~~~~~~~----~~~~~~~--~~~~~~~   78 (231)
                      +.|||+||||+++.....          ...+...+..++...+|||+|||||.......    .+....+  +..+...
T Consensus         3 ~~~rv~TwNi~~~~~~~~----------~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (261)
T d1sr4b_           3 SDFKVATWNLQGSSAVNE----------SKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWN   72 (261)
T ss_dssp             GGSCEEEEECCCCSSSSH----------HHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCCC----------CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             788899996796878755----------5544899999985579998999856754563267998876507651144311


Q ss_pred             CCCCCCCCEEEEEEECCCCE-----EEEEECCCC----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCCC
Q ss_conf             35787650356886146410-----100001221----467565544575049999984997899999751168888754
Q gi|254780797|r   79 SNTDKHAMHTAIVIRKGAIH-----LLQKSYLPM----DTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSI  149 (231)
Q Consensus        79 ~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~g~~~~v~n~HL~s~~~~~~~  149 (231)
                      ..........++.+......     .......+.    ...........|.++.+.+.    ...++++|+.+...... 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~-  147 (261)
T d1sr4b_          73 LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIG----TDVFFTVHALATGGSDA-  147 (261)
T ss_dssp             SSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCCSSCCCCEEEEEET----TEEEEEEECCTTTTTTH-
T ss_pred             CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEEE----CCCCEEEEEEECCCCCC-
T ss_conf             4666677536899504433453012599968875010453688766665227999984----15514799961477512-


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             3002545788754899999999974048878999913688846222
Q gi|254780797|r  150 EDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSH  195 (231)
Q Consensus       150 ~~~~~~~~~~~~~q~~~l~~~i~~~~~~~~~vii~GDFN~~~~~~~  195 (231)
                             ......+...+..........+.|+|+|||||..+.+..
T Consensus       148 -------~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~  186 (261)
T d1sr4b_         148 -------VSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE  186 (261)
T ss_dssp             -------HHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf             -------799999999999999986356997799633276764088


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Cytolethal distending toxin subunit B
species: Haemophilus ducreyi [TaxId: 730]