RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] (231 letters) >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:) Length = 301 Score = 55.4 bits (131), Expect = 7e-09 Identities = 27/204 (13%), Positives = 52/204 (25%), Gaps = 23/204 (11%) Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS---- 59 +I S N+ S + + L+ + + D+V L E Sbjct: 8 PGNFKITSHNVYLFSRNIYPNWGQ------MHRADLIAQADYMKNNDVVILNEAFDTSAS 61 Query: 60 ----------YEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDT 109 Y V K + N A+ V +++KS Sbjct: 62 HRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR 121 Query: 110 EGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQ 169 G + + + +G+ ++ H ++ DS+ S Sbjct: 122 GGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQAD---DSLISKDTSRAIRAEQMQEIQTF 178 Query: 170 WVDQKNNLNMPFIIAGDFNRKINH 193 + + I GD N Sbjct: 179 IAKKNIPKDEIIFIGGDLNVNYGT 202 >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} (A:) Length = 306 Score = 52.8 bits (124), Expect = 4e-08 Identities = 26/234 (11%), Positives = 61/234 (26%), Gaps = 26/234 (11%) Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI------ 57 +++ + N+ LS + L+ + D+V L E+ Sbjct: 7 NDTLKVMTHNVYMLSTNLYPNWGQ------TERADLIGAADYIKNQDVVILNEVFDNSAS 60 Query: 58 ---------GSYEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMD 108 + + + + N V + +K Sbjct: 61 DRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFA 120 Query: 109 TEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLK 168 + V + + R + ++ HL++ DS+ + N Sbjct: 121 KGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE---DSMCGKTSPASVRTNQLKEIQD 177 Query: 169 QWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHN 222 ++ N +I GD N +N ++ ++ +P H Sbjct: 178 FIKNKNIPNNEYVLIGGDMN--VNKINAENNNDSEYASMFKTLNASVPSYTGHT 229 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467) Length = 126 Score = 39.2 bits (91), Expect = 4e-04 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 20/112 (17%) Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIG----- 58 ++ + +WN+ L +++++ L+ + E D++CLQE Sbjct: 13 SRMYKFITWNVAGL----------RGLLKKNAS--ALRAFMEAEKPDVLCLQETKLNVDE 60 Query: 59 -SYEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDT 109 A V + + + T ++ PM T Sbjct: 61 ADANATLGVVDG--YSFVDHPCAFKRGYSGTRTYMKNSTTASYVVDCFPMPT 110 >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} (A:18-321) Length = 304 Score = 38.9 bits (89), Expect = 6e-04 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 13/206 (6%) Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDY--ALLQK-----YAEQLDADIVCLQEIG 58 +I +AS+N+N S + + + D Q+ + + AD +E Sbjct: 9 KIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWE 68 Query: 59 SYEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGK 118 S + I ++ + ++ + GL +G Sbjct: 69 SCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGN 128 Query: 119 RRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLN 178 + AV I F+ + + + HL + +Y + A+ L+ + + Sbjct: 129 KGAVAIRFDYEDTGLCFITSHLAAGY------TNYDERDHDYRTIASGLRFRRGRSIFNH 182 Query: 179 MPFIIAGDFNRKINHSHSGIKDELWQ 204 + GDFN +I+ ++ + + Q Sbjct: 183 DYVVWFGDFNYRISLTYEEVVPCIAQ 208 >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} (A:) Length = 268 Score = 37.9 bits (86), Expect = 0.001 Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 29/182 (15%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66 ++ S+NIN L L+ E+ D++ LQE Sbjct: 1 MKFVSFNINGL----------------RARPHQLEAIVEKHQPDVIGLQETKV------- 37 Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILF 126 +D + + H A+ + D + +RR + Sbjct: 38 -HDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEI 96 Query: 127 EVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGD 186 + +++ + D I L+ +++ + + P +I GD Sbjct: 97 PSLLGNVTVINGYFPQG----ESRDHPIKFPAKAQ-FYQNLQNYLETELKRDNPVLIMGD 151 Query: 187 FN 188 N Sbjct: 152 MN 153 >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} (A:) Length = 267 Score = 37.6 bits (85), Expect = 0.001 Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 13/184 (7%) Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI-GSYEAIK 64 +R A++NI + + + + ++ + + DIV QE+ + Sbjct: 3 DVRWATFNIRYDNPQDSLN-------NWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDL 55 Query: 65 RVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEI 124 R + I + + + RK +L + + AV + Sbjct: 56 RAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXGWDAVCV 115 Query: 125 LFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIA 184 + + + Q+ L ++ P ++ Sbjct: 116 RIATWAKFKDKATGKIFXAVNTH-----FDHVGEEARRQSALLIIRKIKEIVGERPAVVT 170 Query: 185 GDFN 188 GDFN Sbjct: 171 GDFN 174 >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} (A:) Length = 259 Score = 36.7 bits (83), Expect = 0.002 Identities = 22/209 (10%), Positives = 52/209 (24%), Gaps = 34/209 (16%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI-GSYEAIKR 65 ++I S N+N + S ++ +Y ADIVC+QE+ + Sbjct: 2 LKIISANVNGI----------RSAYKKG-----FYEYIAASGADIVCVQELKAQEADLSA 46 Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125 N + + A+ ++ ++ + + ++ Sbjct: 47 DMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVI 106 Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAG 185 + + FLD ++ N ++ G Sbjct: 107 SLYLPSGSSAEERQQVKYRFLD------------------AFYPMLEAMKNEGRDIVVCG 148 Query: 186 DFNRKINHSHSGIKDELWQKINQDNTLMR 214 D+N + + Sbjct: 149 DWNIAHQNIDLKNWKGNQKNSGFLPEERE 177 >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A (A:) Length = 285 Score = 34.8 bits (78), Expect = 0.009 Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 31/192 (16%) Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAI 63 ++IASWN++ L + I++ + ++ DI+CLQE Sbjct: 26 PATLKIASWNVDGL----------RAWIKKK-----GLDWVKEEAPDILCLQET------ 64 Query: 64 KRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVE 123 +K H +A ++G + S + Sbjct: 65 --KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEG 122 Query: 124 ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFII 183 + + L+ ++ + + L P ++ Sbjct: 123 RVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR--------KPLVL 174 Query: 184 AGDFNRKINHSH 195 GD N Sbjct: 175 CGDLNVAHEEID 186 >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} (A:) Length = 257 Score = 34.9 bits (78), Expect = 0.011 Identities = 8/80 (10%), Positives = 22/80 (27%), Gaps = 7/80 (8%) Query: 8 RIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVF 67 +IA++N+ +E + + + D + C+QE+ + Sbjct: 2 KIATYNVRVDTEYDQDW-------QWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKA 54 Query: 68 PNDKWDILYSGSNTDKHAMH 87 + + Sbjct: 55 YTTFTCLSAEREGDGQGEGL 74 >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} (X:) Length = 282 Score = 33.9 bits (76), Expect = 0.017 Identities = 23/205 (11%), Positives = 45/205 (21%), Gaps = 17/205 (8%) Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65 + SWN + + + E D V +Q G Sbjct: 8 SVHTVSWNSGHERAPTNLEELLGLNSGETPDV------------IAVAVQGFGFQTD--- 52 Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125 + S + L + V+ Sbjct: 53 KPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ 112 Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAG 185 + G I+ K F F S + + +K++ + G Sbjct: 113 KKSGGIVTS-FTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYS-KKDDPSDFLFWIG 170 Query: 186 DFNRKINHSHSGIKDELWQKINQDN 210 D N ++ + + K + Q Sbjct: 171 DLNVRVETNATHAKSLVDQNNIDGL 195 >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} (A:) Length = 238 Score = 33.7 bits (75), Expect = 0.022 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 14/87 (16%) Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAI 63 I I + NIN L L + + D + C+QE Sbjct: 5 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRD 50 Query: 64 KRVFPNDKWDILYSGSNTDKHAMHTAI 90 W +Y + K A + Sbjct: 51 THRLKIKGWRKIYQANGKQKKAGVAIL 77 >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:) Length = 257 Score = 33.3 bits (74), Expect = 0.025 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 16/51 (31%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57 ++IA++N+N++ + ++ + ++ DI+C+QE Sbjct: 2 LKIATFNVNSIRSR----------------LHIVIPWLKENKPDILCMQET 36 >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} (A:) Length = 318 Score = 33.2 bits (74), Expect = 0.030 Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 24/145 (16%) Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA- 62 ++I SWN++ L + ++ DI+CLQE E Sbjct: 59 PATLKICSWNVDGLRAW---------------IKKKGLDWVKEEAPDILCLQETKCSENK 103 Query: 63 -IKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRA 121 + Y + +DK ++ + + + + + R Sbjct: 104 LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHD------QEGRV 157 Query: 122 VEILFE-VDGRKIWLLDIHLKSFCF 145 + F+ ++ + Sbjct: 158 IVAEFDSFVLVTAYVPNAGRGLVRL 182 >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} (A:) Length = 245 Score = 32.4 bits (72), Expect = 0.058 Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 16/53 (30%) Query: 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57 R+ N+ A L A A I +QE Sbjct: 18 PPYRVLQANLQRKK----------------LATAELAIEAATRKAAIALIQEP 54 >2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} (B:1-87,B:228-260) Length = 120 Score = 31.7 bits (72), Expect = 0.092 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 25/120 (20%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQL-DADIVCLQEI--GSYEAI 63 ++IA++NI E + ++ L + DIV +QE+ A+ Sbjct: 1 LKIAAFNIRTFGET------------KMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAV 48 Query: 64 KRVF------PNDKWDILYSGSN-TDKHAMHTAIVIRK---GAIHLLQKSYLPMDTEGLD 113 ++ + + + S + + + R A Q +Y + L Sbjct: 49 GKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNGSAAPFDFQAAYGLSNEMALA 108 >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} (A:) Length = 256 Score = 30.3 bits (66), Expect = 0.23 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66 ++I +WN+N+L + +Q DI+ LQE+ + Sbjct: 1 MKITTWNVNSL----------------NVRLPQVQNLLADNPPDILVLQELKLDQDKFPA 44 Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRK 94 S + + Sbjct: 45 AALQMMGWHCVWSGQKTYNGVAIVSRSV 72 >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} (A:) Length = 240 Score = 27.6 bits (60), Expect = 1.6 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 16/87 (18%) Query: 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY 60 M + R+RI N+ + + L A L DIV +QE S Sbjct: 2 MDIRPRLRIGQINLGGAEDAT----------------RELPSIARDLGLDIVLVQEQYSM 45 Query: 61 EAIKRVFPNDKWDILYSGSNTDKHAMH 87 +Y + A+ Sbjct: 46 VGFLAQCGAHPKAGVYIRNRVLPCAVL 72 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:1-134,A:233-439) Length = 341 Score = 25.9 bits (56), Expect = 4.9 Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 2/66 (3%) Query: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHK 218 A + FI AGD N + K Q+ + + Sbjct: 230 WATENAAVPSAAAMGSGSSPHGFIWAGDLN--VAERDYDRYYAGTFKSMQECSGFAPEER 287 Query: 219 KNHNAI 224 + Sbjct: 288 MSFRET 293 >1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} (B:106-228) Length = 123 Score = 25.5 bits (56), Expect = 6.4 Identities = 5/12 (41%), Positives = 8/12 (66%) Query: 178 NMPFIIAGDFNR 189 +++ GDFNR Sbjct: 64 VYSWMVVGDFNR 75 >1h2w_A Prolyl endopeptidase; hydrolase, prolyl oligopeptidase, amnesia, alpha/ beta- hydrolase, beta-propeller, serine protease; 1.39A {Sus scrofa} (A:32-72,A:429-710) Length = 323 Score = 25.5 bits (54), Expect = 6.6 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 168 KQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDN 210 K +V+ +N + +PF+ + EL+ I+ + Sbjct: 9 KAFVEAQNKITVPFLEQCPIRGLYKERMT----ELYDGIDASD 47 >3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} (B:658-767) Length = 110 Score = 25.3 bits (55), Expect = 7.6 Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 20/86 (23%) Query: 54 LQEIGSYEAIK-----------RVFPNDKWDILYSGSNTDKHAMHTAIVIRKG-----AI 97 Y +K + + +W I T K+ + T +R A Sbjct: 7 RSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAP 66 Query: 98 HLLQKSYLPMDTEGLDSKAGKRRAVE 123 S D K R E Sbjct: 67 AYYDLSNFQK----GDVKLSLERIKE 88 >1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} (A:) Length = 318 Score = 25.2 bits (55), Expect = 8.7 Identities = 7/52 (13%), Positives = 17/52 (32%) Query: 82 DKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKI 133 A +V G I + ++ + + K ++V+ F + Sbjct: 193 YAGAAAGVVVGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTV 244 >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A (A:1-106,A:217-265) Length = 155 Score = 24.9 bits (54), Expect = 9.7 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 17/55 (30%) Query: 18 SEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKW 72 G+AL S R+ +L+ LQ+ G + +K KW Sbjct: 109 DRGYGIALQHGSPYRDVFSQRILE------------LQQSGDMDILK-----HKW 146 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0355 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,760,855 Number of extensions: 78173 Number of successful extensions: 176 Number of sequences better than 10.0: 1 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 25 Length of query: 231 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 145 Effective length of database: 2,048,819 Effective search space: 297078755 Effective search space used: 297078755 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (25.2 bits)