RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780797|ref|YP_003065210.1| hypothetical protein
CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} (A:)
Length = 301
Score = 55.4 bits (131), Expect = 7e-09
Identities = 27/204 (13%), Positives = 52/204 (25%), Gaps = 23/204 (11%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGS---- 59
+I S N+ S + + L+ + + D+V L E
Sbjct: 8 PGNFKITSHNVYLFSRNIYPNWGQ------MHRADLIAQADYMKNNDVVILNEAFDTSAS 61
Query: 60 ----------YEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDT 109
Y V K + N A+ V +++KS
Sbjct: 62 HRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR 121
Query: 110 EGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQ 169
G + + + +G+ ++ H ++ DS+ S
Sbjct: 122 GGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQAD---DSLISKDTSRAIRAEQMQEIQTF 178
Query: 170 WVDQKNNLNMPFIIAGDFNRKINH 193
+ + I GD N
Sbjct: 179 IAKKNIPKDEIIFIGGDLNVNYGT 202
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
(A:)
Length = 306
Score = 52.8 bits (124), Expect = 4e-08
Identities = 26/234 (11%), Positives = 61/234 (26%), Gaps = 26/234 (11%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI------ 57
+++ + N+ LS + L+ + D+V L E+
Sbjct: 7 NDTLKVMTHNVYMLSTNLYPNWGQ------TERADLIGAADYIKNQDVVILNEVFDNSAS 60
Query: 58 ---------GSYEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMD 108
+ + + + N V + +K
Sbjct: 61 DRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFA 120
Query: 109 TEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLK 168
+ V + + R + ++ HL++ DS+ + N
Sbjct: 121 KGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE---DSMCGKTSPASVRTNQLKEIQD 177
Query: 169 QWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHN 222
++ N +I GD N +N ++ ++ +P H
Sbjct: 178 FIKNKNIPNNEYVLIGGDMN--VNKINAENNNDSEYASMFKTLNASVPSYTGHT 229
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A
{Leishmania major} (A:135-232,A:440-467)
Length = 126
Score = 39.2 bits (91), Expect = 4e-04
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 20/112 (17%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIG----- 58
++ + +WN+ L +++++ L+ + E D++CLQE
Sbjct: 13 SRMYKFITWNVAGL----------RGLLKKNAS--ALRAFMEAEKPDVLCLQETKLNVDE 60
Query: 59 -SYEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDT 109
A V + + + T ++ PM T
Sbjct: 61 ADANATLGVVDG--YSFVDHPCAFKRGYSGTRTYMKNSTTASYVVDCFPMPT 110
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} (A:18-321)
Length = 304
Score = 38.9 bits (89), Expect = 6e-04
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 13/206 (6%)
Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDY--ALLQK-----YAEQLDADIVCLQEIG 58
+I +AS+N+N S + + + D Q+ + + AD +E
Sbjct: 9 KIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWE 68
Query: 59 SYEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGK 118
S + I ++ + ++ + GL +G
Sbjct: 69 SCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGN 128
Query: 119 RRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLN 178
+ AV I F+ + + + HL + +Y + A+ L+ + +
Sbjct: 129 KGAVAIRFDYEDTGLCFITSHLAAGY------TNYDERDHDYRTIASGLRFRRGRSIFNH 182
Query: 179 MPFIIAGDFNRKINHSHSGIKDELWQ 204
+ GDFN +I+ ++ + + Q
Sbjct: 183 DYVVWFGDFNYRISLTYEEVVPCIAQ 208
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A
{Escherichia coli} (A:)
Length = 268
Score = 37.9 bits (86), Expect = 0.001
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 29/182 (15%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
++ S+NIN L L+ E+ D++ LQE
Sbjct: 1 MKFVSFNINGL----------------RARPHQLEAIVEKHQPDVIGLQETKV------- 37
Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILF 126
+D + + H A+ + D + +RR +
Sbjct: 38 -HDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEI 96
Query: 127 EVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAGD 186
+ +++ + D I L+ +++ + + P +I GD
Sbjct: 97 PSLLGNVTVINGYFPQG----ESRDHPIKFPAKAQ-FYQNLQNYLETELKRDNPVLIMGD 151
Query: 187 FN 188
N
Sbjct: 152 MN 153
>3g6s_A Putative endonuclease/exonuclease/phosphatase family
protein; alpha-beta protein, structural genomics, PSI-2;
2.50A {Bacteroides vulgatus atcc 8482} (A:)
Length = 267
Score = 37.6 bits (85), Expect = 0.001
Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 13/184 (7%)
Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI-GSYEAIK 64
+R A++NI + + + + ++ + + DIV QE+ +
Sbjct: 3 DVRWATFNIRYDNPQDSLN-------NWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDL 55
Query: 65 RVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEI 124
R + I + + + RK +L + + AV +
Sbjct: 56 RAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXGWDAVCV 115
Query: 125 LFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIA 184
+ + + Q+ L ++ P ++
Sbjct: 116 RIATWAKFKDKATGKIFXAVNTH-----FDHVGEEARRQSALLIIRKIKEIVGERPAVVT 170
Query: 185 GDFN 188
GDFN
Sbjct: 171 GDFN 174
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase,
DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis} (A:)
Length = 259
Score = 36.7 bits (83), Expect = 0.002
Identities = 22/209 (10%), Positives = 52/209 (24%), Gaps = 34/209 (16%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI-GSYEAIKR 65
++I S N+N + S ++ +Y ADIVC+QE+ +
Sbjct: 2 LKIISANVNGI----------RSAYKKG-----FYEYIAASGADIVCVQELKAQEADLSA 46
Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125
N + + A+ ++ ++ + + ++
Sbjct: 47 DMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVI 106
Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAG 185
+ + FLD ++ N ++ G
Sbjct: 107 SLYLPSGSSAEERQQVKYRFLD------------------AFYPMLEAMKNEGRDIVVCG 148
Query: 186 DFNRKINHSHSGIKDELWQKINQDNTLMR 214
D+N + +
Sbjct: 149 DWNIAHQNIDLKNWKGNQKNSGFLPEERE 177
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE,
endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A*
1de8_B* 1de9_A* 2o3c_A (A:)
Length = 285
Score = 34.8 bits (78), Expect = 0.009
Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 31/192 (16%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAI 63
++IASWN++ L + I++ + ++ DI+CLQE
Sbjct: 26 PATLKIASWNVDGL----------RAWIKKK-----GLDWVKEEAPDILCLQET------ 64
Query: 64 KRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVE 123
+K H +A ++G + S +
Sbjct: 65 --KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEG 122
Query: 124 ILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFII 183
+ + L+ ++ + + L P ++
Sbjct: 123 RVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR--------KPLVL 174
Query: 184 AGDFNRKINHSH 195
GD N
Sbjct: 175 CGDLNVAHEEID 186
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein,
enterococcus faecalis V583, PSI-2, MCSG, structural
genomics; 1.60A {Enterococcus faecalis} (A:)
Length = 257
Score = 34.9 bits (78), Expect = 0.011
Identities = 8/80 (10%), Positives = 22/80 (27%), Gaps = 7/80 (8%)
Query: 8 RIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVF 67
+IA++N+ +E + + + D + C+QE+ +
Sbjct: 2 KIATYNVRVDTEYDQDW-------QWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKA 54
Query: 68 PNDKWDILYSGSNTDKHAMH 87
+ +
Sbjct: 55 YTTFTCLSAEREGDGQGEGL 74
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} (X:)
Length = 282
Score = 33.9 bits (76), Expect = 0.017
Identities = 23/205 (11%), Positives = 45/205 (21%), Gaps = 17/205 (8%)
Query: 6 RIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65
+ SWN + + + E D V +Q G
Sbjct: 8 SVHTVSWNSGHERAPTNLEELLGLNSGETPDV------------IAVAVQGFGFQTD--- 52
Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125
+ S + L + V+
Sbjct: 53 KPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ 112
Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMPFIIAG 185
+ G I+ K F F S + + +K++ + G
Sbjct: 113 KKSGGIVTS-FTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYS-KKDDPSDFLFWIG 170
Query: 186 DFNRKINHSHSGIKDELWQKINQDN 210
D N ++ + + K + Q
Sbjct: 171 DLNVRVETNATHAKSLVDQNNIDGL 195
>1vyb_A ORF2 contains A reverse transcriptase domain;
endonuclease, APE-1 type, retrotransposition,
retrotransposon, transferase; 1.8A {Homo sapiens} (A:)
Length = 238
Score = 33.7 bits (75), Expect = 0.022
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 14/87 (16%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAI 63
I I + NIN L L + + D + C+QE
Sbjct: 5 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRD 50
Query: 64 KRVFPNDKWDILYSGSNTDKHAMHTAI 90
W +Y + K A +
Sbjct: 51 THRLKIKGWRKIYQANGKQKKAGVAIL 77
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP
endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:)
Length = 257
Score = 33.3 bits (74), Expect = 0.025
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 16/51 (31%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57
++IA++N+N++ + ++ + ++ DI+C+QE
Sbjct: 2 LKIATFNVNSIRSR----------------LHIVIPWLKENKPDILCMQET 36
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
(A:)
Length = 318
Score = 33.2 bits (74), Expect = 0.030
Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 24/145 (16%)
Query: 4 AQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA- 62
++I SWN++ L + ++ DI+CLQE E
Sbjct: 59 PATLKICSWNVDGLRAW---------------IKKKGLDWVKEEAPDILCLQETKCSENK 103
Query: 63 -IKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRA 121
+ Y + +DK ++ + + + + + R
Sbjct: 104 LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHD------QEGRV 157
Query: 122 VEILFE-VDGRKIWLLDIHLKSFCF 145
+ F+ ++ +
Sbjct: 158 IVAEFDSFVLVTAYVPNAGRGLVRL 182
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding
protein; 2.40A {Bombyx mori} (A:)
Length = 245
Score = 32.4 bits (72), Expect = 0.058
Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 16/53 (30%)
Query: 5 QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEI 57
R+ N+ A L A A I +QE
Sbjct: 18 PPYRVLQANLQRKK----------------LATAELAIEAATRKAAIALIQEP 54
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I,
ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos
taurus} (B:1-87,B:228-260)
Length = 120
Score = 31.7 bits (72), Expect = 0.092
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 25/120 (20%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQL-DADIVCLQEI--GSYEAI 63
++IA++NI E + ++ L + DIV +QE+ A+
Sbjct: 1 LKIAAFNIRTFGET------------KMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAV 48
Query: 64 KRVF------PNDKWDILYSGSN-TDKHAMHTAIVIRK---GAIHLLQKSYLPMDTEGLD 113
++ + + + S + + + R A Q +Y + L
Sbjct: 49 GKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNGSAAPFDFQAAYGLSNEMALA 108
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair
phosphodiesterase, DNA repair, exonuclease,
endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
(A:)
Length = 256
Score = 30.3 bits (66), Expect = 0.23
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 16/88 (18%)
Query: 7 IRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRV 66
++I +WN+N+L + +Q DI+ LQE+ +
Sbjct: 1 MKITTWNVNSL----------------NVRLPQVQNLLADNPPDILVLQELKLDQDKFPA 44
Query: 67 FPNDKWDILYSGSNTDKHAMHTAIVIRK 94
S + +
Sbjct: 45 AALQMMGWHCVWSGQKTYNGVAIVSRSV 72
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered
alpha beta sandwich, gene regulation; 2.00A {Bombyx
mori} (A:)
Length = 240
Score = 27.6 bits (60), Expect = 1.6
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY 60
M + R+RI N+ + + L A L DIV +QE S
Sbjct: 2 MDIRPRLRIGQINLGGAEDAT----------------RELPSIARDLGLDIVLVQEQYSM 45
Query: 61 EAIKRVFPNDKWDILYSGSNTDKHAMH 87
+Y + A+
Sbjct: 46 VGFLAQCGAHPKAGVYIRNRVLPCAVL 72
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A
{Leishmania major} (A:1-134,A:233-439)
Length = 341
Score = 25.9 bits (56), Expect = 4.9
Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 2/66 (3%)
Query: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHK 218
A + FI AGD N + K Q+ + +
Sbjct: 230 WATENAAVPSAAAMGSGSSPHGFIWAGDLN--VAERDYDRYYAGTFKSMQECSGFAPEER 287
Query: 219 KNHNAI 224
+
Sbjct: 288 MSFRET 293
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial,
virulence, DNA damage, genotoxin, cytotoxins, cell
cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi}
(B:106-228)
Length = 123
Score = 25.5 bits (56), Expect = 6.4
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 178 NMPFIIAGDFNR 189
+++ GDFNR
Sbjct: 64 VYSWMVVGDFNR 75
>1h2w_A Prolyl endopeptidase; hydrolase, prolyl oligopeptidase,
amnesia, alpha/ beta- hydrolase, beta-propeller, serine
protease; 1.39A {Sus scrofa} (A:32-72,A:429-710)
Length = 323
Score = 25.5 bits (54), Expect = 6.6
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 168 KQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDN 210
K +V+ +N + +PF+ + EL+ I+ +
Sbjct: 9 KAFVEAQNKITVPFLEQCPIRGLYKERMT----ELYDGIDASD 47
>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43;
REC-A domains, OB fold, winged-helix domain,
ATP-binding, mRNA processing; HET: ADP; 2.20A
{Saccharomyces cerevisiae} (B:658-767)
Length = 110
Score = 25.3 bits (55), Expect = 7.6
Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 20/86 (23%)
Query: 54 LQEIGSYEAIK-----------RVFPNDKWDILYSGSNTDKHAMHTAIVIRKG-----AI 97
Y +K + + +W I T K+ + T +R A
Sbjct: 7 RSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAP 66
Query: 98 HLLQKSYLPMDTEGLDSKAGKRRAVE 123
S D K R E
Sbjct: 67 AYYDLSNFQK----GDVKLSLERIKE 88
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores;
2.0A {Escherichia coli} (A:)
Length = 318
Score = 25.2 bits (55), Expect = 8.7
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 82 DKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEILFEVDGRKI 133
A +V G I + ++ + + K ++V+ F +
Sbjct: 193 YAGAAAGVVVGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTV 244
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane,
ionotropic glutamate receptors, transmembrane, membrane
protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
(A:1-106,A:217-265)
Length = 155
Score = 24.9 bits (54), Expect = 9.7
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 17/55 (30%)
Query: 18 SEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKRVFPNDKW 72
G+AL S R+ +L+ LQ+ G + +K KW
Sbjct: 109 DRGYGIALQHGSPYRDVFSQRILE------------LQQSGDMDILK-----HKW 146
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0355 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,760,855
Number of extensions: 78173
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 25
Length of query: 231
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 145
Effective length of database: 2,048,819
Effective search space: 297078755
Effective search space used: 297078755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.2 bits)