RPSBLAST alignment of GI: 254780797 and protein with PDBid: 3i41

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A Length = 317
 Score = 61.9 bits (149), Expect = 1e-10
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 5   QRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIK 64
             +++ S N+  LS              +     L+ + +   + D+V   E     A  
Sbjct: 28  TDLKLVSHNVYMLSTVLYPN------WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASD 81

Query: 65  RVFPNDKWDILYSGSNTDKHAMHTAIVIRKGA--------------IHLLQKSYLPMDTE 110
           ++  N K +  Y      +            +                + +K      + 
Sbjct: 82  KLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSG 141

Query: 111 GLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQW 170
                   +  V    E +G+ + ++  H +S                +   Q   +  +
Sbjct: 142 CGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDR----KIRAEQMKEISDF 197

Query: 171 VDQKNNLN-MPFIIAGDFNRKINHSHSGIKDELWQKINQDNTL 212
           V +KN        I GD N    +  +    ++ + +N ++ L
Sbjct: 198 VKKKNIPKDETVYIGGDLN---VNKGTPEFKDMLKNLNVNDVL 237