BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780797|ref|YP_003065210.1| hypothetical protein
CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62]
         (231 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 231

 Score =  476 bits (1224), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY 60
           MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY
Sbjct: 1   MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY 60

Query: 61  EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRR 120
           EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRR
Sbjct: 61  EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRR 120

Query: 121 AVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMP 180
           AVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMP
Sbjct: 121 AVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMP 180

Query: 181 FIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILKI 231
           FIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILKI
Sbjct: 181 FIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILKI 231


>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 304

 Score =  242 bits (618), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 166/235 (70%), Gaps = 9/235 (3%)

Query: 3   LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA 62
           +AQ++R+ SWNIN LSE+ GV+L+KNSV R  +DY LL++YA+ LDADIV LQE+GSY A
Sbjct: 20  VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA 79

Query: 63  IKRVFPNDKWDILYSGSNTDKHA-------MHTAIVIRKGAIHLLQKSYLPMDTEGLDSK 115
           + +VFP + W I YS      H+       +HTAI +RK  + +LQ+SY  +  +   S+
Sbjct: 80  VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSR 139

Query: 116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN 175
           AG RRAVE+L E++G+KIW+LDIHLKSFCFLDS+E++Y  SC +L+ QA WLK W+ QK 
Sbjct: 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKK 199

Query: 176 NLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILK 230
              +PF+IAGDFNRKIN  + G  D+ W+ I+ +++L+R P +K+      K L+
Sbjct: 200 ESLVPFVIAGDFNRKIN--YLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252


>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score = 70.5 bits (171), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 2/61 (3%)

Query: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHK 218
           ML+ Q  WLK+W DQK    +PF+IAGDFNRKIN    G  D+ WQK++ D  L+R P +
Sbjct: 1   MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQE 58

Query: 219 K 219
           K
Sbjct: 59  K 59


>gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 109

 Score = 68.6 bits (166), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 27/110 (24%)

Query: 67  FPNDKWDILYSGS-------------------------NTDKHAMHTAIVIRKGAIHLLQ 101
            P DKW I YSG                          +TD+  ++TAI IRK    +LQ
Sbjct: 1   MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60

Query: 102 KSY-LPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIE 150
            SY LP   E +  + G R+ VE+L E+D +K+WLL++HLKS C +  I+
Sbjct: 61  VSYPLPAPQE-ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109


>gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 281

 Score = 32.3 bits (72), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 41/203 (20%)

Query: 7   IRIASWNINNLSEK-SGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65
           + +A+WN+N++  +   +A +    I+E+N              DI+CLQE  + +   +
Sbjct: 4   VTVATWNVNSIRARIHNLAAW----IKENN-------------PDIICLQETKTED---K 43

Query: 66  VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125
            FP +    L     T     +  + I      +   ++LP D   LD +A   R +E  
Sbjct: 44  NFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGD--DLDVQA---RFIEAT 98

Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIE-DSYISSCYMLNLQATWLKQWV---DQKNNLNMPF 181
           F ++ + + + +++L     + S + D  IS          W+K+++    Q+  L  P 
Sbjct: 99  FTINTQTLRIGNLYLPHGNPITSTKYDDKIS----------WIKRFLRFASQRLELEEPL 148

Query: 182 IIAGDFNRKINHSHSGIKDELWQ 204
           I AGD+N  I   H      +W+
Sbjct: 149 IFAGDYN-IIPQPHDCYNPIIWE 170


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,742
Number of Sequences: 1233
Number of extensions: 6766
Number of successful extensions: 29
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 231
length of database: 328,796
effective HSP length: 71
effective length of query: 160
effective length of database: 241,253
effective search space: 38600480
effective search space used: 38600480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)