BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] (231 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] Length = 231 Score = 476 bits (1224), Expect = e-136, Method: Compositional matrix adjust. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY 60 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY Sbjct: 1 MILAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSY 60 Query: 61 EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRR 120 EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRR Sbjct: 61 EAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRR 120 Query: 121 AVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMP 180 AVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMP Sbjct: 121 AVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKNNLNMP 180 Query: 181 FIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILKI 231 FIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILKI Sbjct: 181 FIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILKI 231 >gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] Length = 304 Score = 242 bits (618), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 166/235 (70%), Gaps = 9/235 (3%) Query: 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA 62 +AQ++R+ SWNIN LSE+ GV+L+KNSV R +DY LL++YA+ LDADIV LQE+GSY A Sbjct: 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA 79 Query: 63 IKRVFPNDKWDILYSGSNTDKHA-------MHTAIVIRKGAIHLLQKSYLPMDTEGLDSK 115 + +VFP + W I YS H+ +HTAI +RK + +LQ+SY + + S+ Sbjct: 80 VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSR 139 Query: 116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN 175 AG RRAVE+L E++G+KIW+LDIHLKSFCFLDS+E++Y SC +L+ QA WLK W+ QK Sbjct: 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKK 199 Query: 176 NLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILK 230 +PF+IAGDFNRKIN + G D+ W+ I+ +++L+R P +K+ K L+ Sbjct: 200 ESLVPFVIAGDFNRKIN--YLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252 >gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 70.5 bits (171), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 2/61 (3%) Query: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHK 218 ML+ Q WLK+W DQK +PF+IAGDFNRKIN G D+ WQK++ D L+R P + Sbjct: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQE 58 Query: 219 K 219 K Sbjct: 59 K 59 >gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62] Length = 109 Score = 68.6 bits (166), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 27/110 (24%) Query: 67 FPNDKWDILYSGS-------------------------NTDKHAMHTAIVIRKGAIHLLQ 101 P DKW I YSG +TD+ ++TAI IRK +LQ Sbjct: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60 Query: 102 KSY-LPMDTEGLDSKAGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIE 150 SY LP E + + G R+ VE+L E+D +K+WLL++HLKS C + I+ Sbjct: 61 VSYPLPAPQE-ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109 >gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 32.3 bits (72), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 41/203 (20%) Query: 7 IRIASWNINNLSEK-SGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65 + +A+WN+N++ + +A + I+E+N DI+CLQE + + + Sbjct: 4 VTVATWNVNSIRARIHNLAAW----IKENN-------------PDIICLQETKTED---K 43 Query: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125 FP + L T + + I + ++LP D LD +A R +E Sbjct: 44 NFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGD--DLDVQA---RFIEAT 98 Query: 126 FEVDGRKIWLLDIHLKSFCFLDSIE-DSYISSCYMLNLQATWLKQWV---DQKNNLNMPF 181 F ++ + + + +++L + S + D IS W+K+++ Q+ L P Sbjct: 99 FTINTQTLRIGNLYLPHGNPITSTKYDDKIS----------WIKRFLRFASQRLELEEPL 148 Query: 182 IIAGDFNRKINHSHSGIKDELWQ 204 I AGD+N I H +W+ Sbjct: 149 IFAGDYN-IIPQPHDCYNPIIWE 170 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.136 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,742 Number of Sequences: 1233 Number of extensions: 6766 Number of successful extensions: 29 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 9 length of query: 231 length of database: 328,796 effective HSP length: 71 effective length of query: 160 effective length of database: 241,253 effective search space: 38600480 effective search space used: 38600480 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 37 (18.9 bits)