HHsearch alignment for GI: 254780798 and conserved domain: COG2834
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=3.5e-32 Score=200.37 Aligned_cols=170 Identities=18% Similarity=0.313 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEC---CCEEE-EEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHHH-
Q ss_conf 1799999986126706999999618---95599-999996698699997166415777512059997133343210111-
Q gi|254780798|r 34 QSVKKAIEHFLSIQTMQGTFLQEDA---GYVMK-GEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYPL- 108 (204)
Q Consensus 34 ~~~~~i~~~l~~~~t~~a~F~Q~~~---~~~~~-G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~~- 108 (204)
T Consensus 27 ~~~~~l~~~~~~i~~~s~~f~q~~~~g~~~~~~~g~~~~kkP~~~R~~~~~p~~~~ivsdG~~v~iydp~~~q~~~~~~~ 106 (211)
T COG2834 27 EAASQLKERLAKVKSYSASFTQTVESGSGKQTQEGKLWIKRPNLFRWEYESPDEQVIVSDGKTVWIYDPDLEQVTKTWLS 106 (211)
T ss_pred HHHHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEEEECCCCCEEEEEECC
T ss_conf 99999999986304124799999615996189999999977971899973998529999699999986887589999525
Q ss_pred ---HHHHHHHHCCHHHHHHHHCCCCCCCCCC-EEEEECCC--CCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEE
Q ss_conf ---1112332100012122210113223572-79972046--66663479999369842999999967998799999743
Q gi|254780798|r 109 ---RYMAFSVIFSNNQHVIQESIQRVESNNS-FITIFFKD--DFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKY 182 (204)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni 182 (204)
T Consensus 107 ~~~~~tp~~~~~~~~~~~~~~~~v~~~g~~~~~~~l~l~pk~~~~~~~~~i~vd~~~~~~~~~~~~d~~g~~~~i~~~~~ 186 (211)
T COG2834 107 EATGNTPLMLLLSNIKDLLNEYNVSLLGTSDVAYVLELTPKANLGNSKQRIIVDKEDGTPLRFELTDADGQTVTITFSNV 186 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEE
T ss_conf 67787727876521155403404653377650699996035567776189999757782899999967997999999961
Q ss_pred ECCCCCCHHHCCCCCCCCCCC
Q ss_conf 228868965512685313448
Q gi|254780798|r 183 KENTVLDPKVFEIPYDKIHNI 203 (204)
Q Consensus 183 ~~N~~i~~~~F~f~~~~~~~~ 203 (204)
T Consensus 187 ~~n~~l~d~~F~f~~p~~~~v 207 (211)
T COG2834 187 KNNPGLDDSLFKFTPPKGVTV 207 (211)
T ss_pred EECCCCCCCCEEECCCCCCEE
T ss_conf 665898854311259988673