HHsearch alignment for GI: 254780798 and conserved domain: COG3026
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms].
Probab=96.48 E-value=0.055 Score=30.17 Aligned_cols=183 Identities=10% Similarity=0.043 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEE----EECCCEEEEEECCC
Q ss_conf 89999999999999999974034443101799999986126706999999618955999999----96698699997166
Q gi|254780798|r 6 YKSVIGVVILFFYSAIFPFNAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFF----MARPSKFYFKYSSP 81 (204)
Q Consensus 6 mk~i~~~~i~~~~~~~~~~~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~----~kkP~k~rw~y~~P 81 (204)
T Consensus 1 mk~l~~s~~ll~~sl~~s~~a~ae~~s~~~L~km~~A~~~-lnYe~sfv~~~~~~m~slryrH~~~D~~~-~aqLl~LDG 78 (320)
T COG3026 1 MKQLWFSLLLLLGSLLLSAAASAESASAAWLQKMNEASQS-LNYELSFVYTRKQGMESLRYRHARLDNKP-LAQLLQLDG 78 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCEEEEEHHCCCH-HHHHHHCCC
T ss_conf 9237899999999986104430468658999999998873-67279999986887640123321115727-888874257
Q ss_pred CEEEEEEECEEEEEEECCCCCCCCHH---HHHHHHHHHCCHHHHHHHH-CCCCC---CCCCCE-EEEECCCCCCCCEEEE
Q ss_conf 41577751205999713334321011---1111233210001212221-01132---235727-9972046666634799
Q gi|254780798|r 82 SSVSLISDGSNIAVYNAKLDTWSVYP---LRYMAFSVIFSNNQHVIQE-SIQRV---ESNNSF-ITIFFKDDFMGNMISV 153 (204)
Q Consensus 82 ~~~~iv~~g~~l~~~d~~~~q~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~-~~~~~~~~~~~~~i~l 153 (204)
T Consensus 79 ~~rEvvrr~n~vsyf~pg~~~ft~~~~~i~ds~Pal~~tdf~~Ls~~YDf~~vGr~RVAgr~c~virvvpkD~~RY~Y~v 158 (320)
T COG3026 79 PRREVVRRGNEVSYFEPGLEPFTLNGDYIVDSLPALLNTDFKRLSSYYDFRKVGRTRVAGRLCEVIRVVPKDGFRYSYIV 158 (320)
T ss_pred CCEEEEEECCEEEEECCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHCCCCEEEEEECCCCCCEEEEEE
T ss_conf 41035663888876337754055136430333178873698786432127550655525871048997358885689999
Q ss_pred EEECCCCEEEEEEEEECCCCEE-EEEEEEEECCCCCCH
Q ss_conf 9936984299999996799879-999974322886896
Q gi|254780798|r 154 TFDRLSYRLLNWKIMDSSRRYS-IIKILKYKENTVLDP 190 (204)
Q Consensus 154 ~f~~~~~~l~~~~i~D~~G~~t-~i~f~ni~~N~~i~~ 190 (204)
T Consensus 159 w~D~~s~LplrsdlLdrdG~~LEQfrvi~~~vg~~~~~ 196 (320)
T COG3026 159 WLDEESGLPLRSDLLDRDGELLEQFRVIQFNVGDPLQG 196 (320)
T ss_pred EEECCCCCCHHHHHHCCCCCEEEEEEEEEEEECCCHHH
T ss_conf 97446797013565166530531288999984771289