HHsearch alignment for GI: 254780798 and conserved domain: COG3900
>COG3900 Predicted periplasmic protein [Function unknown].
Probab=97.98 E-value=0.00043 Score=42.03 Aligned_cols=168 Identities=10% Similarity=0.084 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEEE-----ECCC----EEEEEEEEECCCEEEEEECCCCE-EEEEEECEEEEEEECC
Q ss_conf 431017999999861267069999996-----1895----59999999669869999716641-5777512059997133
Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQE-----DAGY----VMKGEFFMARPSKFYFKYSSPSS-VSLISDGSNIAVYNAK 99 (204)
Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q~-----~~~~----~~~G~~~~kkP~k~rw~y~~P~~-~~iv~~g~~l~~~d~~ 99 (204)
T Consensus 35 ~dad~llkamsdflqaqk~fSv~yd~t~evv~~~gqKlqysasgt~tvsrpdklr~tr~G~~~dte~~fDGktftl~gkn 114 (262)
T COG3900 35 RDADQLLKAMSDFLQAQKTFSVDYDITYEVVTEDGQKLQYSASGTLTVSRPDKLRSTRVGGFRDTEFYFDGKTFTLLGKN 114 (262)
T ss_pred CCHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCCCEEEEEECCCEEEECCCCEEEECCCCCEEEEEEECCCEEEEECCC
T ss_conf 13999999999999753316556203300112577666554056488505764255212683656888648378997476
Q ss_pred CCCCCCHHHHHH-----------------HHHHHCCHHHHHHHHCCCCCCC-------CCCEEEEECCCCCCCCEEEEEE
Q ss_conf 343210111111-----------------2332100012122210113223-------5727997204666663479999
Q gi|254780798|r 100 LDTWSVYPLRYM-----------------AFSVIFSNNQHVIQESIQRVES-------NNSFITIFFKDDFMGNMISVTF 155 (204)
Q Consensus 100 ~~q~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~l~f 155 (204)
T Consensus 115 ln~YaqieapgTiD~lvdei~~kyG~~lp~adllsadpyd~L~~gv~ss~~vg~~vVgg~ecd~lafr--~ddvDfqIWI 192 (262)
T COG3900 115 LNFYAQIEAPGTIDELVDEIDDKYGITLPGADLLSADPYDDLIAGVESSKFVGNAVVGGEECDQLAFR--KDDVDFQIWI 192 (262)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCC--CCCCCEEEEE
T ss_conf 55225046998488999987763088765123323684788986510013331100074000234304--8997669986
Q ss_pred E--CCCCEEEEEEEEE--CCCCEEEEEEEEEECCCCCCHHHCCCCCCC
Q ss_conf 3--6984299999996--799879999974322886896551268531
Q gi|254780798|r 156 D--RLSYRLLNWKIMD--SSRRYSIIKILKYKENTVLDPKVFEIPYDK 199 (204)
Q Consensus 156 ~--~~~~~l~~~~i~D--~~G~~t~i~f~ni~~N~~i~~~~F~f~~~~ 199 (204)
T Consensus 193 sqGeqpvp~k~VITsk~v~g~PqYtv~fsnwksgdev~s~~F~Fkppt 240 (262)
T COG3900 193 SQGEQPVPLKYVITSKDVPGEPQYTVVFSNWKSGDEVPSSDFTFKPPT 240 (262)
T ss_pred ECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEECCCC
T ss_conf 159877531699984246899747999713656898663422654988