HHsearch alignment of GI: 254780798 and MMDB domain: 3buu_A_

>3buu_A (A:) Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=99.81  E-value=7e-19  Score=125.04  Aligned_cols=171  Identities=10%  Similarity=0.037  Sum_probs=131.7

Q ss_pred             HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEC-----CCEEEEEEEEECCCEEEEEECCCC---EEEEEEECEEEEEE
Q ss_conf             4034443101799999986126706999999618-----955999999966986999971664---15777512059997
Q gi|254780798|r   25 NAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDA-----GYVMKGEFFMARPSKFYFKYSSPS---SVSLISDGSNIAVY   96 (204)
Q Consensus        25 ~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~-----~~~~~G~~~~kkP~k~rw~y~~P~---~~~iv~~g~~l~~~   96 (204)
                      +++.+..+++++.++.+.++++++++|+|+|+..     .....|++++++|+++||+|..|.   .+.+++||+.+|.|
T Consensus         2 a~~~~~ta~~il~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~p~~~~~~~~~~dG~~~w~y   81 (229)
T 3buu_A            2 NAKSAVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVXITEPASERGQAILXKGRDLWVF   81 (229)
T ss_dssp             ----CCCHHHHHHHHHHHHSCSSCEEEEEEEEEEETTEECCCEEEEEEEETTTEEEEEEEESTTTTTCEEEEETTEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEECCCCCEEE
T ss_conf             85234799999999986315788879999999965997579999999972893599999168533580899937651888


Q ss_pred             ECCCCCCCCHHHHHHHHHHHCCHHHH---HHHHC--------CCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf             13334321011111123321000121---22210--------11322357279972046666634799993698429999
Q gi|254780798|r   97 NAKLDTWSVYPLRYMAFSVIFSNNQH---VIQES--------IQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNW  165 (204)
Q Consensus        97 d~~~~q~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~  165 (204)
                      +|.++++...+..+............   .....        ...+.....+.+.++........+.+++|.+++.+.++
T Consensus        82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~g~~~~vl~~~pk~~~~~~~~~~l~id~~~~~p~k~  161 (229)
T 3buu_A           82 XPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKA  161 (229)
T ss_dssp             CTTCSSCEEECTTSEEETTEEHHHHHCCCSBTTEEEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEE
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEECCCCEEEEE
T ss_conf             44458338925765657874422000043100233788300251564489999960787777645999998666368999


Q ss_pred             EEEECCCCEE-EEEEEEEECCCCCCHHHCCC
Q ss_conf             9996799879-99997432288689655126
Q gi|254780798|r  166 KIMDSSRRYS-IIKILKYKENTVLDPKVFEI  195 (204)
Q Consensus       166 ~i~D~~G~~t-~i~f~ni~~N~~i~~~~F~f  195 (204)
                      ++.|..|+.+ ++.|++++.|..+....+.+
T Consensus       162 ~~~d~~g~~~~~~~~~~~~~~~~~~~p~~~~  192 (229)
T 3buu_A          162 EFYSVSGRLLKTSRYENFDNILGEXRPTRII  192 (229)
T ss_dssp             EEECTTSCEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCCEEEEEEEEEEEEECCEEEEEEEE
T ss_conf             9981799488999988869988998768999