Query gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 112 out of 1275 Neff 8.8 Searched_HMMs 23785 Date Mon May 30 12:47:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780798.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2w7q_A Outer-membrane lipoprot 100.0 1.1E-32 4.5E-37 202.0 20.0 180 25-204 12-203 (204) 2 1iwl_A P20, outer-membrane lip 100.0 3E-31 1.2E-35 193.9 19.0 167 34-203 1-178 (182) 3 2yzy_A Putative uncharacterize 99.8 2.1E-18 8.7E-23 121.5 13.4 175 27-203 3-198 (200) 4 3buu_A Uncharacterized LOLA su 99.0 1.1E-07 4.7E-12 61.0 17.6 170 25-195 2-222 (229) 5 3bk5_A Putative outer membrane 97.8 0.0013 5.3E-08 38.2 16.9 167 30-196 4-233 (237) 6 3m4w_A Sigma-E factor regulato 97.7 0.0022 9.2E-08 36.8 15.7 165 31-196 3-179 (295) 7 2qgu_A Probable signal peptide 54.3 3.4 0.00014 18.8 1.0 14 5-18 1-14 (211) 8 1dbg_A Chondroitinase B; beta 25.8 20 0.00086 14.5 1.2 15 33-47 28-42 (506) 9 2v25_A Major cell-binding fact 20.9 22 0.00091 14.3 0.6 11 3-13 1-11 (259) 10 1my6_A Iron (III) superoxide d 20.2 3.2 0.00014 19.0 -3.8 47 31-77 94-141 (199) No 1 >2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, periplasm, chaperone; 1.88A {Pseudomonas aeruginosa} Probab=100.00 E-value=1.1e-32 Score=202.05 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=141.8 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECC------CEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEEC Q ss_conf 40344431017999999861267069999996189------559999999669869999716641577751205999713 Q gi|254780798|r 25 NAAYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAG------YVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNA 98 (204) Q Consensus 25 ~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~------~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~ 98 (204) .++.+...++.++++.++++++++++|+|+|+..+ ..++|+|+++||++|||+|.+|.++.+++||+++|+||+ T Consensus 12 ~~s~a~~~~~~~~kl~~~~~~~~s~~a~F~Q~~~~~~~~~~~~s~G~~~~~kP~k~r~~y~~P~~~~ii~~g~~l~~~d~ 91 (204) T 2w7q_A 12 RGSIAIDDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTDAPNEQLLISNGEKVWLYDP 91 (204) T ss_dssp -CCCSSCCHHHHHHHHHHHHTCSEEEEEEEEEEECTTSCCEEEEEEEEEEETTTEEEEEECSSSCEEEEEETTEEEEEET T ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEEEECC T ss_conf 35344162789999999983676489999999965889747888999999809989999889850799984987999875 Q ss_pred CCCCCCCHHHHHH----HHHHHCCHHHHHHHHCCCCCC-CCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCC Q ss_conf 3343210111111----233210001212221011322-35727997204666663479999369842999999967998 Q gi|254780798|r 99 KLDTWSVYPLRYM----AFSVIFSNNQHVIQESIQRVE-SNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRR 173 (204) Q Consensus 99 ~~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~ 173 (204) +++++..++.... +..++.+.............. ..........+.........++|+.++..|++|++.|..|+ T Consensus 92 ~~~~v~~~~~~~~~~~~~~~~l~~~~~~l~~~~~v~~~~~~~~~~~~l~p~~~~~~~~~i~i~~~~~~l~~i~i~d~~g~ 171 (204) T 2w7q_A 92 DLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGGNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQMIDGVGQ 171 (204) T ss_dssp TTTEEEEECHHHHTTTCGGGGGGSCHHHHTTTEEEEEEEETTEEEEEEEESSSCSSCSEEEEEEETTEEEEEEEECTTCC T ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHEECCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEEECCCC T ss_conf 34523012321111113355642444566654201000258618999735677764689999955981899999968999 Q ss_pred EEEEEEEEEECCCCCCHHHCCCCCC-CCCCCC Q ss_conf 7999997432288689655126853-134489 Q gi|254780798|r 174 YSIIKILKYKENTVLDPKVFEIPYD-KIHNIN 204 (204) Q Consensus 174 ~t~i~f~ni~~N~~i~~~~F~f~~~-~~~~~~ 204 (204) .|++.|+|++.|.++++++|+|.+| ++++|+ T Consensus 172 ~t~i~f~n~~~n~~i~~~~F~f~~P~g~eVi~ 203 (204) T 2w7q_A 172 RTNILFFDVKMNEALDAKQFTFDVPPGVDVIQ 203 (204) T ss_dssp EEEEEEEEEEESCCCCGGGGCCCCCTTCEEEC T ss_pred EEEEEEEEEEECCCCCHHHEEECCCCCCEEEC T ss_conf 99999994560899896458897959976747 No 2 >1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta barrel, protein transport; 1.65A {Escherichia coli} SCOP: b.125.1.1 PDB: 1ua8_A 2zpd_A 2zpc_A Probab=100.00 E-value=3e-31 Score=193.90 Aligned_cols=167 Identities=15% Similarity=0.238 Sum_probs=133.5 Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEC------CCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHH Q ss_conf 1799999986126706999999618------9559999999669869999716641577751205999713334321011 Q gi|254780798|r 34 QSVKKAIEHFLSIQTMQGTFLQEDA------GYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYP 107 (204) Q Consensus 34 ~~~~~i~~~l~~~~t~~a~F~Q~~~------~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~ 107 (204) +++.+|+++|+++++++|+|+|+.. ..+++|+++++|||++||+|.+|.++.+++||+.+|+|||+++|+..++ T Consensus 1 d~~~~l~~~l~~~~s~~a~F~Q~~~~~~~~~~~~~~G~~~~~kp~~~r~~y~~P~~~~iv~~g~~l~~y~~~~~~v~~~~ 80 (182) T 1iwl_A 1 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW 80 (182) T ss_dssp CHHHHHHHHTTSCSEEEEEEEEEEEC-----CEEEEEEEEEETTTEEEEEECSSSCEEEEEESSEEEEEEGGGTEEEEEE T ss_pred CHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCC T ss_conf 97899999984567389999999985889704789999999809989999858825999985968999755324012455 Q ss_pred HHHHH----HHHHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEE Q ss_conf 11112----33210001212221011322357279972046666634799993698429999999679987999997432 Q gi|254780798|r 108 LRYMA----FSVIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYK 183 (204) Q Consensus 108 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~ 183 (204) ..... ...+............. ........+.++........+.|+|+.++ .|++|.+.|..|++|+|.|++ + T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~pk~~~~~~~~i~i~~~~~~-~l~~i~~~d~~g~~t~i~f~~-~ 157 (182) T 1iwl_A 81 LKDATGNTPFMLIARNQSSDWQQYNI-KQNGDDFVLTPKASNGNLKQFTINVGRDG-TIHQFSAVEQDDQRSSYQLKS-Q 157 (182) T ss_dssp GGGCCCCSHHHHHHHCCHHHHTTEEE-EEETTEEEEEESSSSCSEEEEEEEECTTC-CEEEEEEEETTCCEEEEEEEE-E T ss_pred HHHHHCCCHHHHHCCCCHHHHHHEEE-ECCCCEEEEEECCCCCCEEEEEEEECCCC-CEEEEEEEECCCCEEEEEEEC-C T ss_conf 02321027467751541555543000-02351799988587767048999996899-698999997896999999980-0 Q ss_pred CCCCCCHHHCCC-CCCCCCCC Q ss_conf 288689655126-85313448 Q gi|254780798|r 184 ENTVLDPKVFEI-PYDKIHNI 203 (204) Q Consensus 184 ~N~~i~~~~F~f-~~~~~~~~ 203 (204) .|.++++++|+| +++++++| T Consensus 158 ~n~~i~~~~F~f~~P~g~eVi 178 (182) T 1iwl_A 158 QNGAVDAAKFTFTPPQGVTVD 178 (182) T ss_dssp EESCCCGGGGSCCCCSSCEEE T ss_pred CCCCCCHHHEEECCCCCCEEE T ss_conf 679999667889795998687 No 3 >2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 1.60A {Thermus thermophilus HB8} Probab=99.79 E-value=2.1e-18 Score=121.52 Aligned_cols=175 Identities=9% Similarity=0.046 Sum_probs=122.8 Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEEEEE-ECC-CEEEEEE-EEECCCEEEEEECCCCE---EEEEEECEEEEEEECCC Q ss_conf 344431017999999861267069999996-189-5599999-99669869999716641---57775120599971333 Q gi|254780798|r 27 AYPITKDQSVKKAIEHFLSIQTMQGTFLQE-DAG-YVMKGEF-FMARPSKFYFKYSSPSS---VSLISDGSNIAVYNAKL 100 (204) Q Consensus 27 ~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~-~~~-~~~~G~~-~~kkP~k~rw~y~~P~~---~~iv~~g~~l~~~d~~~ 100 (204) +.|..++++++++.+.+++.++.++.+.-+ ..+ ...+-+. .+++|+++||+|.+|.. +.++.||+.+|.|+|++ T Consensus 3 ~~A~sa~eil~k~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r~~~~~P~~~~g~~~l~dG~~~W~Y~p~~ 82 (200) T 2yzy_A 3 GLAQSAQEILDRVEKNLSTPWQATVQGRIQGPGGEEELLARVYALPQARLFRVEFLKPGSLEGNFTVITEKEVWNYLYLT 82 (200) T ss_dssp ---CHHHHHHHHHHHHTCSCEEEEEEEEC-----CCEEEEEEEEEGGGTEEEEEEEESTTTTTCEEEECSSCEEEEETTT T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCEEEEEEECCCCCCCEEEEECCCEEEEEECCC T ss_conf 20348999999999763545326999999937997478999999806987999991786557719999199999995778 Q ss_pred CCCCCHHHHHHHHHH---HCCH---HHHHHHHCCCC--------CCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEE Q ss_conf 432101111112332---1000---12122210113--------223572799720466666347999936984299999 Q gi|254780798|r 101 DTWSVYPLRYMAFSV---IFSN---NQHVIQESIQR--------VESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWK 166 (204) Q Consensus 101 ~q~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~ 166 (204) +++.+.+........ .... ........... ........+.+ +.+.....+.++++.+++.+.+++ T Consensus 83 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~e~~~g~~~~~l~l~p-k~~~~~~~~~lwIdk~~~~p~k~~ 161 (200) T 2yzy_A 83 NQLVISPREKAKIQGLGFAPQGLGDLKALSEQVDLRLEGEVRLPEGMAWKLVGRS-KENQGFAAMELYILKADPRPLRFV 161 (200) T ss_dssp TEEEEEC------------------------CCEEEEEEEEEETTEEEEEEEEEC----CCCSEEEEEEETTTTEEEEEE T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCEEECCCCEEEEEECC-CCCCCCEEEEEEEECCCCEEEEEE T ss_conf 8389963632323345667204565666544110110342331896089997367-765542069999998999699999 Q ss_pred EEECCCCE-EEEEEEEEECCCCCCHHHCCCCCCCCCCC Q ss_conf 99679987-99999743228868965512685313448 Q gi|254780798|r 167 IMDSSRRY-SIIKILKYKENTVLDPKVFEIPYDKIHNI 203 (204) Q Consensus 167 i~D~~G~~-t~i~f~ni~~N~~i~~~~F~f~~~~~~~~ 203 (204) +.|..|+. ++++|+|++ |..++++.|+|.+++..+| T Consensus 162 ~~d~~g~~~~~~~~~~~k-~~~~~~~~f~~~P~~~~vi 198 (200) T 2yzy_A 162 FLDEKGKVLADLKVVEFK-RTNLTEAQLKRYPKDAQVV 198 (200) T ss_dssp EECTTSCEEEEEEEEEEE-ECCCCHHHHTCCCTTCEEE T ss_pred EEECCCCEEEEEEEEEEE-ECCCCHHHCEECCCCCCEE T ss_conf 994899989999999856-0799859957789998013 No 4 >3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} Probab=98.98 E-value=1.1e-07 Score=61.03 Aligned_cols=170 Identities=13% Similarity=0.085 Sum_probs=109.2 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEE-ECCC----EEEEEEEEECCCEEEEEECCCCE---EEEEEECEEEEEE Q ss_conf 40344431017999999861267069999996-1895----59999999669869999716641---5777512059997 Q gi|254780798|r 25 NAAYPITKDQSVKKAIEHFLSIQTMQGTFLQE-DAGY----VMKGEFFMARPSKFYFKYSSPSS---VSLISDGSNIAVY 96 (204) Q Consensus 25 ~a~~~~~~~~~~~~i~~~l~~~~t~~a~F~Q~-~~~~----~~~G~~~~kkP~k~rw~y~~P~~---~~iv~~g~~l~~~ 96 (204) .|+++..++++++++.+....-.++++..+=+ ..+. ..+=..+-+-+.+....+.+|.. +.++.+|+.+|.| T Consensus 2 ~a~~a~ta~eIl~k~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~k~li~f~~P~~~kG~~~L~~~d~~w~Y 81 (229) T 3buu_A 2 NAKSAVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVMITEPASERGQAILMKGRDLWVF 81 (229) T ss_dssp ----CCCHHHHHHHHHHHHSCSSCEEEEEEEEEEETTEECCCEEEEEEEETTTEEEEEEEESTTTTTCEEEEETTEEEEE T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEECCCCEEEE T ss_conf 85234799999999987406799889999999975997469999999963993799999078202692999907761898 Q ss_pred ECCCCCCCCHHHHHHHHHHHCCHHH---HHHHHC--------CCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEE--- Q ss_conf 1333432101111112332100012---122210--------11322357279972046666634799993698429--- Q gi|254780798|r 97 NAKLDTWSVYPLRYMAFSVIFSNNQ---HVIQES--------IQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRL--- 162 (204) Q Consensus 97 d~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l--- 162 (204) .|.++++-+.+..+....-+...+. +..... ...+.......+.++......+.+.++++.+++.+ T Consensus 82 lP~~~rv~ris~~~~~~~~f~~~D~~~~dl~~dy~~~~~~e~~~~g~~~yvlel~pk~~~~~Y~k~~~wIdk~~~~p~k~ 161 (229) T 3buu_A 82 MPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKA 161 (229) T ss_dssp CTTCSSCEEECTTSEEETTEEHHHHHCCCSBTTEEEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEE T ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEE T ss_conf 55568369955765556875433011120002334898400368884499999852788888669999999878889999 Q ss_pred ---------------------------EEEEEEEC--CCCEEEEEEEEEECCCCCCHHHCCC Q ss_conf ---------------------------99999967--9987999997432288689655126 Q gi|254780798|r 163 ---------------------------LNWKIMDS--SRRYSIIKILKYKENTVLDPKVFEI 195 (204) Q Consensus 163 ---------------------------~~~~i~D~--~G~~t~i~f~ni~~N~~i~~~~F~f 195 (204) ..+.+.|. .|..|.+.++++++| +++++.|.- T Consensus 162 e~yd~~G~l~K~~~~~~~~~i~g~~~p~~~~~~~~~~~~~~T~l~~~~i~~~-~i~d~~Ft~ 222 (229) T 3buu_A 162 EFYSVSGRLLKTSRYENFDNILGEMRPTRIIMEDALKSGEVSVLDYSDMKLR-DLPDKIFTK 222 (229) T ss_dssp EEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEESSSSCCEEEEEEEEEEEC-CCCGGGSST T ss_pred EEECCCCCEEEEEEEEEEEEECCEEEEEEEEEEECCCCCCEEEEEEEEEEEC-CCCHHHCCH T ss_conf 9991799789999968539988999879999996877898899999851348-899487889 No 5 >3bk5_A Putative outer membrane lipoprotein-sorting protein; putative outer membrane protein domain, PSI-2; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} Probab=97.81 E-value=0.0013 Score=38.16 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=93.8 Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEE--E-ECCCEEEEEEEEE---CC---CEEEEEECCCCE---EEEEE-----ECEE Q ss_conf 43101799999986126706999999--6-1895599999996---69---869999716641---57775-----1205 Q gi|254780798|r 30 ITKDQSVKKAIEHFLSIQTMQGTFLQ--E-DAGYVMKGEFFMA---RP---SKFYFKYSSPSS---VSLIS-----DGSN 92 (204) Q Consensus 30 ~~~~~~~~~i~~~l~~~~t~~a~F~Q--~-~~~~~~~G~~~~k---kP---~k~rw~y~~P~~---~~iv~-----~g~~ 92 (204) ....++++++.+.-.+.++.+|.-.= + ..|...+=.+-++ .+ .+....+..|.. +.+.. .++. T Consensus 4 ~~g~eIa~~~~~~~~g~~~~~~~~~M~l~~~~g~~~~R~~~~~~~~~~~~~~ksli~f~~P~~~kGt~~L~~~~~~~~dd 83 (237) T 3bk5_A 4 EKGLEIAQERKARDEGWGDSIATMEMILKNAQGESSTRLMRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGADD 83 (237) T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEEEEECCC-CCEEEEEEEEEECCTTSCCEEEEEEEESTTTTTCEEEEECCSSSCCE T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEEECCHHCCCCEEEEEECCCCCCC T ss_conf 67999999977512487782699999999589989999999999980799837999993651105948998644689861 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCHHHHH--------HHHC------CCCCCCCCCEEEEECCCCCCCCEEEEEEECC Q ss_conf 9997133343210111111233210001212--------2210------1132235727997204666663479999369 Q gi|254780798|r 93 IAVYNAKLDTWSVYPLRYMAFSVIFSNNQHV--------IQES------IQRVESNNSFITIFFKDDFMGNMISVTFDRL 158 (204) Q Consensus 93 l~~~d~~~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~ 158 (204) .|.|.|.++.+-+.+...-...+........ .... ...+.........++........+.++++.+ T Consensus 84 ~WlYlP~~~rv~RIs~s~k~~sfmGSDfsyeDl~~~~~~~~~~~l~~~~~~~g~~~~vle~~pk~~~~~Y~k~~~wIdk~ 163 (237) T 3bk5_A 84 QWLYLPALKRVKRISSRNKSGPFMGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKA 163 (237) T ss_dssp EEEEETTTTEEEECCGGGTTSBSTTSSCBGGGGSCCCGGGEEEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEETT T ss_pred EEEECCCCCCEEECCCCCCCCCCCCCEEEHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEECC T ss_conf 58984778834985830146873344112134100320001122202211288069999952589877416999999977 Q ss_pred CCEEEEEEEEECC--------------------------------CCEEEEEEEEEECCCCCCHHHCCCC Q ss_conf 8429999999679--------------------------------9879999974322886896551268 Q gi|254780798|r 159 SYRLLNWKIMDSS--------------------------------RRYSIIKILKYKENTVLDPKVFEIP 196 (204) Q Consensus 159 ~~~l~~~~i~D~~--------------------------------G~~t~i~f~ni~~N~~i~~~~F~f~ 196 (204) ++.+.+.+..|.. |..|.+.+.++++|..|++++|.-. T Consensus 164 ~~~p~k~e~yd~~G~l~K~~~~~~~~~~~~~~~~~~~~~m~~~~~g~~T~l~~~~i~~~~~l~d~~Ft~~ 233 (237) T 3bk5_A 164 HYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTMAMTNHQTGKSTELNTSDLRFQTGLEENDFNKN 233 (237) T ss_dssp TCCEEEEEEEETTSCEEEEEEEEEEEEETTTEEEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGGCGG T ss_pred CCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHCCHH T ss_conf 7679999999279969999994541320596443499999917889889999986781899894888987 No 6 >3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A Probab=97.66 E-value=0.0022 Score=36.82 Aligned_cols=165 Identities=10% Similarity=0.047 Sum_probs=102.2 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CC--CEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHH Q ss_conf 310179999998612670699999961895599999996-69--869999716641577751205999713334321011 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RP--SKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYP 107 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP--~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~ 107 (204) ++...++++.+..++ .++++.|+....+...+=.+.=. .. ..-|.+.-.-.+..++-.|+.++.+.|+.+.+.... T Consensus 3 ~a~~lL~~m~~A~~~-lnY~g~fv~~~~~~~~s~ri~H~~~~~~e~erl~~LdG~~revir~~~~v~~~~p~~~~~~~~~ 81 (295) T 3m4w_A 3 ASGALLQQMNLASQS-LNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG 81 (295) T ss_dssp HHHHHHHHHHHHHHH-SEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEECSSSCCEEEEETTEEEEECTTSCCEEEEC T ss_pred CHHHHHHHHHHHHHH-CCEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEC T ss_conf 489999999988875-7834999999099077899999980996999999559994289997999999907985278845 Q ss_pred H--HHHHHHHHCCHHHHHHHHCCC------CCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEE-EEE Q ss_conf 1--111233210001212221011------3223572799720466666347999936984299999996799879-999 Q gi|254780798|r 108 L--RYMAFSVIFSNNQHVIQESIQ------RVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYS-IIK 178 (204) Q Consensus 108 ~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t-~i~ 178 (204) - ......++..........+.. ..-..........+.+..-....+|+|.++..+.+.++.|..|+.. .+. T Consensus 82 ~~~~~~fp~~l~~~~~~l~~~Y~~~~~G~~RVAGR~a~vi~l~PkD~~Ry~y~lWiD~etgLpLk~~~~d~~g~vlEq~~ 161 (295) T 3m4w_A 82 DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 161 (295) T ss_dssp SSCTTSSCGGGGCCHHHHTTTEEEEEEEEEEETTEEEEEEEEEETTSCSCEEEEEEETTTCCEEEEEEECTTSCEEEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHCEEEEECCCCEECCCEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCEEEEEE T ss_conf 54556673114547556741544898688579993889999985799768899999878896887755047997999999 Q ss_pred EEEEECCCCCCHHHCCCC Q ss_conf 974322886896551268 Q gi|254780798|r 179 ILKYKENTVLDPKVFEIP 196 (204) Q Consensus 179 f~ni~~N~~i~~~~F~f~ 196 (204) |+++..+..+++..|.++ T Consensus 162 ft~l~~~~~~~~~~~~~~ 179 (295) T 3m4w_A 162 VIAFNVNQDISSSMQTLA 179 (295) T ss_dssp EEEEEEESSCCHHHHHHH T ss_pred EEEEEECCCCCHHHHHCC T ss_conf 999882788665564021 No 7 >2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000} Probab=54.33 E-value=3.4 Score=18.82 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88999999999999 Q gi|254780798|r 5 LYKSVIGVVILFFY 18 (204) Q Consensus 5 ~mk~i~~~~i~~~~ 18 (204) |||+++..+++.++ T Consensus 1 M~k~~~~~l~~~l~ 14 (211) T 2qgu_A 1 MFKKLLHSLVAGLT 14 (211) T ss_dssp -------------- T ss_pred CHHHHHHHHHHHHH T ss_conf 94899999999999 No 8 >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Probab=25.79 E-value=20 Score=14.45 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=7.2 Q ss_pred CHHHHHHHHHHHCCC Q ss_conf 017999999861267 Q gi|254780798|r 33 DQSVKKAIEHFLSIQ 47 (204) Q Consensus 33 ~~~~~~i~~~l~~~~ 47 (204) -...+.|++.+++.+ T Consensus 28 v~~~~tiq~Ai~~a~ 42 (506) T 1dbg_A 28 VASNETLYQVVKEVK 42 (506) T ss_dssp ECSHHHHHHHHHHCC T ss_pred CCCHHHHHHHHHCCC T ss_conf 498589999997089 No 9 >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Probab=20.85 E-value=22 Score=14.30 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=4.7 Q ss_pred HHHHHHHHHHH Q ss_conf 47889999999 Q gi|254780798|r 3 FLLYKSVIGVV 13 (204) Q Consensus 3 ~~~mk~i~~~~ 13 (204) |+|+|.++.+. T Consensus 1 m~~~k~l~~~~ 11 (259) T 2v25_A 1 MVFRKSLLKLA 11 (259) T ss_dssp ----------- T ss_pred CCHHHHHHHHH T ss_conf 96379999999 No 10 >1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Probab=20.23 E-value=3.2 Score=18.95 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=35.9 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEE Q ss_conf 310179999998612670699999961895599999996-69869999 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFK 77 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~ 77 (204) ........|++.+.+.+.|+.+|.+.-.+...+|-.++- .|++++.. T Consensus 94 p~~~l~~~I~~~FGS~d~fk~~F~~~a~~~~GsGW~wL~~~~~~l~i~ 141 (199) T 1my6_A 94 PTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVT 141 (199) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEE T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE T ss_conf 898999999987489999999999988607776699999738953377 Done!