Query gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 112 out of 1275 Neff 8.8 Searched_HMMs 13730 Date Wed Jun 1 06:46:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780798.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1iwla_ b.125.1.1 (A:) Outer-m 100.0 2.8E-31 2E-35 192.7 19.1 168 34-204 1-179 (182) 2 d1my6a2 d.44.1.1 (A:89-198) Fe 17.6 2.5 0.00018 18.2 -3.6 47 31-77 6-53 (110) 3 d1ma1a2 d.44.1.1 (A:92-204) Fe 15.4 2.4 0.00018 18.3 -4.1 45 33-77 8-55 (113) 4 d1gv3a2 d.44.1.1 (A:127-237) M 14.1 3.1 0.00023 17.7 -3.8 49 31-79 6-56 (111) 5 d1mnga2 d.44.1.1 (A:93-203) Mn 13.6 4.3 0.00031 16.9 -3.2 52 31-82 6-59 (111) 6 d1p7ga2 d.44.1.1 (A:104-222) F 10.7 7.8 0.00057 15.5 -2.7 46 32-77 5-53 (119) 7 d1iwma_ b.125.1.2 (A:) Outer m 9.7 41 0.003 11.4 5.1 68 40-107 13-87 (177) 8 d1bsma2 d.44.1.1 (A:87-201) Ca 9.6 8.4 0.00062 15.3 -2.8 38 32-69 7-44 (115) 9 d1idsa2 d.44.1.1 (A:86-199) Fe 9.5 9.4 0.00069 15.0 -2.6 44 32-75 7-53 (114) 10 d1y67a2 d.44.1.1 (A:98-213) Mn 9.5 4.7 0.00034 16.7 -4.2 46 33-78 5-51 (116) No 1 >d1iwla_ b.125.1.1 (A:) Outer-membrane lipoproteins carrier protein LolA {Escherichia coli [TaxId: 562]} Probab=99.98 E-value=2.8e-31 Score=192.72 Aligned_cols=168 Identities=14% Similarity=0.230 Sum_probs=133.9 Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEEC------CCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHH Q ss_conf 1799999986126706999999618------9559999999669869999716641577751205999713334321011 Q gi|254780798|r 34 QSVKKAIEHFLSIQTMQGTFLQEDA------GYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYP 107 (204) Q Consensus 34 ~~~~~i~~~l~~~~t~~a~F~Q~~~------~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~ 107 (204) +++++|+++++++++|+|+|+|+.. ..+++|+|+++|||++||+|.+|.++.+|+||+++|+|+|+++++..++ T Consensus 1 D~~~~l~~~~~~~~s~~a~F~Q~~~~~~~~~~~~~~G~~~~~kP~~~r~~y~~P~~~~iv~~g~~l~~~~~~~~~~~~~~ 80 (182) T d1iwla_ 1 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW 80 (182) T ss_dssp CHHHHHHHHTTSCSEEEEEEEEEEEC-----CEEEEEEEEEETTTEEEEEECSSSCEEEEEESSEEEEEEGGGTEEEEEE T ss_pred CHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEECCCCCEEEEEECCEEEEECCCCCCCCCCC T ss_conf 97899999984547389999999975788704789999999809979999815563047850437899535555110024 Q ss_pred HHHHHHH----HHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEE Q ss_conf 1111233----210001212221011322357279972046666634799993698429999999679987999997432 Q gi|254780798|r 108 LRYMAFS----VIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYK 183 (204) Q Consensus 108 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~ 183 (204) +...... ++.+........ ...........+.+.+.......+.|.|+.++ .+++|++.|..|++|++.|++ + T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~-~l~~i~~~d~~g~~t~i~f~~-~ 157 (182) T d1iwla_ 81 LKDATGNTPFMLIARNQSSDWQQ-YNIKQNGDDFVLTPKASNGNLKQFTINVGRDG-TIHQFSAVEQDDQRSSYQLKS-Q 157 (182) T ss_dssp GGGCCCCSHHHHHHHCCHHHHTT-EEEEEETTEEEEEESSSSCSEEEEEEEECTTC-CEEEEEEEETTCCEEEEEEEE-E T ss_pred CCHHHHCCHHHHHHCCCHHHHHH-HCCCCCCEEEEEEECCCCCCCCEEEEEECCCC-CEEEEEEEECCCCEEEEEEEC-C T ss_conf 00000015466652120223221-10024430599962487766538999997999-689999998898999999981-0 Q ss_pred CCCCCCHHHCCC-CCCCCCCCC Q ss_conf 288689655126-853134489 Q gi|254780798|r 184 ENTVLDPKVFEI-PYDKIHNIN 204 (204) Q Consensus 184 ~N~~i~~~~F~f-~~~~~~~~~ 204 (204) .|+++++++|+| |++++.+|+ T Consensus 158 ~n~~i~~~~F~f~~P~~~eVid 179 (182) T d1iwla_ 158 QNGAVDAAKFTFTPPQGVTVDD 179 (182) T ss_dssp EESCCCGGGGSCCCCSSCEEEE T ss_pred CCCCCCHHHEEECCCCCCEEEE T ss_conf 6899997678787959986870 No 2 >d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Probab=17.63 E-value=2.5 Score=18.25 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=35.1 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEE Q ss_conf 310179999998612670699999961895599999996-69869999 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFK 77 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~ 77 (204) ....+.+.|++.+.+.+.|+.+|++.-.+...+|-+++- .+++++.. T Consensus 6 P~g~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~wL~~~~~~l~i~ 53 (110) T d1my6a2 6 PTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVT 53 (110) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEE T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEE T ss_conf 988999999988089999999999875334120489999617840489 No 3 >d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=15.37 E-value=2.4 Score=18.33 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=33.9 Q ss_pred CHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC---CCEEEEE Q ss_conf 01799999986126706999999618955999999966---9869999 Q gi|254780798|r 33 DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR---PSKFYFK 77 (204) Q Consensus 33 ~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk---P~k~rw~ 77 (204) ....+.|++.+.|...|.++|++.-.+...+|-.++-. -+++... T Consensus 8 g~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~~~~~~~l~i~ 55 (113) T d1ma1a2 8 GKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIM 55 (113) T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHTCSSSEEEEEEEETTTTEEEEE T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEE T ss_conf 899999998838999999999998744655506999972477852566 No 4 >d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Probab=14.08 E-value=3.1 Score=17.70 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=35.8 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEECC--CEEEEEEC Q ss_conf 31017999999861267069999996189559999999669--86999971 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARP--SKFYFKYS 79 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kkP--~k~rw~y~ 79 (204) ....+.+.|++.+.+.+.|..+|++.-.+...+|-.++-.+ ++++.... T Consensus 6 P~g~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wL~~~~~~~l~i~~~ 56 (111) T d1gv3a2 6 PTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVST 56 (111) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEECTTSCEEEEEE T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEE T ss_conf 988999999988289999999999987265567558999989998899972 No 5 >d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Probab=13.64 E-value=4.3 Score=16.91 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=36.8 Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC--CCEEEEEECCCC Q ss_conf 3101799999986126706999999618955999999966--986999971664 Q gi|254780798|r 31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR--PSKFYFKYSSPS 82 (204) Q Consensus 31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk--P~k~rw~y~~P~ 82 (204) ....+.+.|++.+.+.+.|+.+|++.-.+...+|-.++-. -++++....... T Consensus 6 P~g~L~~~Ie~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~~~~~~l~i~~~~~~ 59 (111) T d1mnga2 6 PVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKLHVLSTPNQ 59 (111) T ss_dssp CCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEECTTSCEEEEEEETT T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCC T ss_conf 978999999988089999999999865066431699999879996899970587 No 6 >d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=10.74 E-value=7.8 Score=15.46 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=33.8 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC---CCEEEEE Q ss_conf 101799999986126706999999618955999999966---9869999 Q gi|254780798|r 32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR---PSKFYFK 77 (204) Q Consensus 32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk---P~k~rw~ 77 (204) .....+.|++.+.+...|..+|++...+...+|-.++-. .+++... T Consensus 5 ~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGW~wLv~~~~~~~l~i~ 53 (119) T d1p7ga2 5 GGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLIL 53 (119) T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHHTCSSSEEEEEEEETTTTEEEEE T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEE T ss_conf 8899999998808999999999976503665517999971567622333 No 7 >d1iwma_ b.125.1.2 (A:) Outer membrane lipoprotein receptor LolB {Escherichia coli [TaxId: 562]} Probab=9.66 E-value=41 Score=11.40 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=37.5 Q ss_pred HHHHHCCCEEE--EEEEEEECCCEEEEEEEEE-C-CCEEEEEECCCCEEE---EEEECEEEEEEECCCCCCCCHH Q ss_conf 99861267069--9999961895599999996-6-986999971664157---7751205999713334321011 Q gi|254780798|r 40 IEHFLSIQTMQ--GTFLQEDAGYVMKGEFFMA-R-PSKFYFKYSSPSSVS---LISDGSNIAVYNAKLDTWSVYP 107 (204) Q Consensus 40 ~~~l~~~~t~~--a~F~Q~~~~~~~~G~~~~k-k-P~k~rw~y~~P~~~~---iv~~g~~l~~~d~~~~q~~~~~ 107 (204) .+.+..++.++ |.+-=...++..+|.|.-+ . |+.++.....|.... |..+...+.+.+.+.+.....+ T Consensus 13 ~~~l~~i~~w~~~Gkiav~~~~~~~sa~f~W~q~~~~~~~i~l~~plG~~~~~i~~~~~~~~l~~~dg~~~~a~~ 87 (177) T d1iwma_ 13 QQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADD 87 (177) T ss_dssp HHHHHTCCEEEEEEEEEEECSSCEEEEEEEEEEETTTEEEEEEECTTSCEEEEEEEETTEEEEECTTSCEEEESC T ss_pred HHHHHHHHCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCC T ss_conf 999861205068689999858871789999998488847999982465439999986997999968998896799 No 8 >d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Probab=9.65 E-value=8.4 Score=15.26 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=30.4 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE Q ss_conf 10179999998612670699999961895599999996 Q gi|254780798|r 32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA 69 (204) Q Consensus 32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k 69 (204) .....+.|++.+.+.+.|..+|.+.-.+...+|-+++- T Consensus 7 ~g~L~~~I~~~FGS~~~fk~~f~~~A~~~~GsGWvwLv 44 (115) T d1bsma2 7 TDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLV 44 (115) T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHHCCSSSEEEEEE T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 78999999988289999999999866326554158988 No 9 >d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Probab=9.54 E-value=9.4 Score=15.00 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=33.6 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC---CCEEE Q ss_conf 101799999986126706999999618955999999966---98699 Q gi|254780798|r 32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR---PSKFY 75 (204) Q Consensus 32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk---P~k~r 75 (204) ...+.+.|++.+.+...|..+|++.-.+...+|-.++-. .+++. T Consensus 7 ~g~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wL~~~~~~~~l~ 53 (114) T d1idsa2 7 TGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLL 53 (114) T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHHCCSSSEEEEEEEETTTTEEE T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEE T ss_conf 78999999988389999999999865423444058999835888246 No 10 >d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Probab=9.45 E-value=4.7 Score=16.71 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=34.2 Q ss_pred CHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEE-ECCCEEEEEE Q ss_conf 017999999861267069999996189559999999-6698699997 Q gi|254780798|r 33 DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFM-ARPSKFYFKY 78 (204) Q Consensus 33 ~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~-kkP~k~rw~y 78 (204) ....+.|++.+.+.+.|..+|.+.-.+...+|-+++ ..+++++..- T Consensus 5 g~L~~~I~~~FGS~d~fk~~f~~~A~~~~GsGW~wL~~~~~~l~i~~ 51 (116) T d1y67a2 5 GELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVS 51 (116) T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEEE T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEECCCE T ss_conf 79999999880899999999998650556534999983298751300 Done!