Query         gi|254780798|ref|YP_003065211.1| possible lolA type protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs    112 out of 1275
Neff          8.8 
Searched_HMMs 13730
Date          Wed Jun  1 06:46:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780798.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1iwla_ b.125.1.1 (A:) Outer-m 100.0 2.8E-31   2E-35  192.7  19.1  168   34-204     1-179 (182)
  2 d1my6a2 d.44.1.1 (A:89-198) Fe  17.6     2.5 0.00018   18.2  -3.6   47   31-77      6-53  (110)
  3 d1ma1a2 d.44.1.1 (A:92-204) Fe  15.4     2.4 0.00018   18.3  -4.1   45   33-77      8-55  (113)
  4 d1gv3a2 d.44.1.1 (A:127-237) M  14.1     3.1 0.00023   17.7  -3.8   49   31-79      6-56  (111)
  5 d1mnga2 d.44.1.1 (A:93-203) Mn  13.6     4.3 0.00031   16.9  -3.2   52   31-82      6-59  (111)
  6 d1p7ga2 d.44.1.1 (A:104-222) F  10.7     7.8 0.00057   15.5  -2.7   46   32-77      5-53  (119)
  7 d1iwma_ b.125.1.2 (A:) Outer m   9.7      41   0.003   11.4   5.1   68   40-107    13-87  (177)
  8 d1bsma2 d.44.1.1 (A:87-201) Ca   9.6     8.4 0.00062   15.3  -2.8   38   32-69      7-44  (115)
  9 d1idsa2 d.44.1.1 (A:86-199) Fe   9.5     9.4 0.00069   15.0  -2.6   44   32-75      7-53  (114)
 10 d1y67a2 d.44.1.1 (A:98-213) Mn   9.5     4.7 0.00034   16.7  -4.2   46   33-78      5-51  (116)

No 1  
>d1iwla_ b.125.1.1 (A:) Outer-membrane lipoproteins carrier protein LolA {Escherichia coli [TaxId: 562]}
Probab=99.98  E-value=2.8e-31  Score=192.72  Aligned_cols=168  Identities=14%  Similarity=0.230  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHCCCEEEEEEEEEEC------CCEEEEEEEEECCCEEEEEECCCCEEEEEEECEEEEEEECCCCCCCCHH
Q ss_conf             1799999986126706999999618------9559999999669869999716641577751205999713334321011
Q gi|254780798|r   34 QSVKKAIEHFLSIQTMQGTFLQEDA------GYVMKGEFFMARPSKFYFKYSSPSSVSLISDGSNIAVYNAKLDTWSVYP  107 (204)
Q Consensus        34 ~~~~~i~~~l~~~~t~~a~F~Q~~~------~~~~~G~~~~kkP~k~rw~y~~P~~~~iv~~g~~l~~~d~~~~q~~~~~  107 (204)
                      +++++|+++++++++|+|+|+|+..      ..+++|+|+++|||++||+|.+|.++.+|+||+++|+|+|+++++..++
T Consensus         1 D~~~~l~~~~~~~~s~~a~F~Q~~~~~~~~~~~~~~G~~~~~kP~~~r~~y~~P~~~~iv~~g~~l~~~~~~~~~~~~~~   80 (182)
T d1iwla_           1 DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW   80 (182)
T ss_dssp             CHHHHHHHHTTSCSEEEEEEEEEEEC-----CEEEEEEEEEETTTEEEEEECSSSCEEEEEESSEEEEEEGGGTEEEEEE
T ss_pred             CHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEECCCCCEEEEEECCEEEEECCCCCCCCCCC
T ss_conf             97899999984547389999999975788704789999999809979999815563047850437899535555110024


Q ss_pred             HHHHHHH----HHCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             1111233----210001212221011322357279972046666634799993698429999999679987999997432
Q gi|254780798|r  108 LRYMAFS----VIFSNNQHVIQESIQRVESNNSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYK  183 (204)
Q Consensus       108 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~f~~~~~~l~~~~i~D~~G~~t~i~f~ni~  183 (204)
                      +......    ++.+........ ...........+.+.+.......+.|.|+.++ .+++|++.|..|++|++.|++ +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~-~l~~i~~~d~~g~~t~i~f~~-~  157 (182)
T d1iwla_          81 LKDATGNTPFMLIARNQSSDWQQ-YNIKQNGDDFVLTPKASNGNLKQFTINVGRDG-TIHQFSAVEQDDQRSSYQLKS-Q  157 (182)
T ss_dssp             GGGCCCCSHHHHHHHCCHHHHTT-EEEEEETTEEEEEESSSSCSEEEEEEEECTTC-CEEEEEEEETTCCEEEEEEEE-E
T ss_pred             CCHHHHCCHHHHHHCCCHHHHHH-HCCCCCCEEEEEEECCCCCCCCEEEEEECCCC-CEEEEEEEECCCCEEEEEEEC-C
T ss_conf             00000015466652120223221-10024430599962487766538999997999-689999998898999999981-0


Q ss_pred             CCCCCCHHHCCC-CCCCCCCCC
Q ss_conf             288689655126-853134489
Q gi|254780798|r  184 ENTVLDPKVFEI-PYDKIHNIN  204 (204)
Q Consensus       184 ~N~~i~~~~F~f-~~~~~~~~~  204 (204)
                      .|+++++++|+| |++++.+|+
T Consensus       158 ~n~~i~~~~F~f~~P~~~eVid  179 (182)
T d1iwla_         158 QNGAVDAAKFTFTPPQGVTVDD  179 (182)
T ss_dssp             EESCCCGGGGSCCCCSSCEEEE
T ss_pred             CCCCCCHHHEEECCCCCCEEEE
T ss_conf             6899997678787959986870


No 2  
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.63  E-value=2.5  Score=18.25  Aligned_cols=47  Identities=11%  Similarity=0.118  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE-CCCEEEEE
Q ss_conf             310179999998612670699999961895599999996-69869999
Q gi|254780798|r   31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA-RPSKFYFK   77 (204)
Q Consensus        31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k-kP~k~rw~   77 (204)
                      ....+.+.|++.+.+.+.|+.+|++.-.+...+|-+++- .+++++..
T Consensus         6 P~g~L~~~I~~~FGS~e~fk~~f~~~a~~~~GsGW~wL~~~~~~l~i~   53 (110)
T d1my6a2           6 PTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVT   53 (110)
T ss_dssp             CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEE
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEE
T ss_conf             988999999988089999999999875334120489999617840489


No 3  
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.37  E-value=2.4  Score=18.33  Aligned_cols=45  Identities=11%  Similarity=0.129  Sum_probs=33.9

Q ss_pred             CHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC---CCEEEEE
Q ss_conf             01799999986126706999999618955999999966---9869999
Q gi|254780798|r   33 DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR---PSKFYFK   77 (204)
Q Consensus        33 ~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk---P~k~rw~   77 (204)
                      ....+.|++.+.|...|.++|++.-.+...+|-.++-.   -+++...
T Consensus         8 g~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~~~~~~~l~i~   55 (113)
T d1ma1a2           8 GKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIM   55 (113)
T ss_dssp             HHHHHHHHHHHSSHHHHHHHHHHHHHTCSSSEEEEEEEETTTTEEEEE
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEE
T ss_conf             899999998838999999999998744655506999972477852566


No 4  
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]}
Probab=14.08  E-value=3.1  Score=17.70  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEECC--CEEEEEEC
Q ss_conf             31017999999861267069999996189559999999669--86999971
Q gi|254780798|r   31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARP--SKFYFKYS   79 (204)
Q Consensus        31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kkP--~k~rw~y~   79 (204)
                      ....+.+.|++.+.+.+.|..+|++.-.+...+|-.++-.+  ++++....
T Consensus         6 P~g~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wL~~~~~~~l~i~~~   56 (111)
T d1gv3a2           6 PTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVST   56 (111)
T ss_dssp             CCHHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEECTTSCEEEEEE
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEE
T ss_conf             988999999988289999999999987265567558999989998899972


No 5  
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=13.64  E-value=4.3  Score=16.91  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC--CCEEEEEECCCC
Q ss_conf             3101799999986126706999999618955999999966--986999971664
Q gi|254780798|r   31 TKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR--PSKFYFKYSSPS   82 (204)
Q Consensus        31 ~~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk--P~k~rw~y~~P~   82 (204)
                      ....+.+.|++.+.+.+.|+.+|++.-.+...+|-.++-.  -++++.......
T Consensus         6 P~g~L~~~Ie~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~~~~~~l~i~~~~~~   59 (111)
T d1mnga2           6 PVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDPFGKLHVLSTPNQ   59 (111)
T ss_dssp             CCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEECTTSCEEEEEEETT
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf             978999999988089999999999865066431699999879996899970587


No 6  
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=10.74  E-value=7.8  Score=15.46  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC---CCEEEEE
Q ss_conf             101799999986126706999999618955999999966---9869999
Q gi|254780798|r   32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR---PSKFYFK   77 (204)
Q Consensus        32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk---P~k~rw~   77 (204)
                      .....+.|++.+.+...|..+|++...+...+|-.++-.   .+++...
T Consensus         5 ~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGW~wLv~~~~~~~l~i~   53 (119)
T d1p7ga2           5 GGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLIL   53 (119)
T ss_dssp             CHHHHHHHHHHHSSHHHHHHHHHHHHHTCSSSEEEEEEEETTTTEEEEE
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEE
T ss_conf             8899999998808999999999976503665517999971567622333


No 7  
>d1iwma_ b.125.1.2 (A:) Outer membrane lipoprotein receptor LolB {Escherichia coli [TaxId: 562]}
Probab=9.66  E-value=41  Score=11.40  Aligned_cols=68  Identities=13%  Similarity=0.249  Sum_probs=37.5

Q ss_pred             HHHHHCCCEEE--EEEEEEECCCEEEEEEEEE-C-CCEEEEEECCCCEEE---EEEECEEEEEEECCCCCCCCHH
Q ss_conf             99861267069--9999961895599999996-6-986999971664157---7751205999713334321011
Q gi|254780798|r   40 IEHFLSIQTMQ--GTFLQEDAGYVMKGEFFMA-R-PSKFYFKYSSPSSVS---LISDGSNIAVYNAKLDTWSVYP  107 (204)
Q Consensus        40 ~~~l~~~~t~~--a~F~Q~~~~~~~~G~~~~k-k-P~k~rw~y~~P~~~~---iv~~g~~l~~~d~~~~q~~~~~  107 (204)
                      .+.+..++.++  |.+-=...++..+|.|.-+ . |+.++.....|....   |..+...+.+.+.+.+.....+
T Consensus        13 ~~~l~~i~~w~~~Gkiav~~~~~~~sa~f~W~q~~~~~~~i~l~~plG~~~~~i~~~~~~~~l~~~dg~~~~a~~   87 (177)
T d1iwma_          13 QQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADD   87 (177)
T ss_dssp             HHHHHTCCEEEEEEEEEEECSSCEEEEEEEEEEETTTEEEEEEECTTSCEEEEEEEETTEEEEECTTSCEEEESC
T ss_pred             HHHHHHHHCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCC
T ss_conf             999861205068689999858871789999998488847999982465439999986997999968998896799


No 8  
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]}
Probab=9.65  E-value=8.4  Score=15.26  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEE
Q ss_conf             10179999998612670699999961895599999996
Q gi|254780798|r   32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMA   69 (204)
Q Consensus        32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~k   69 (204)
                      .....+.|++.+.+.+.|..+|.+.-.+...+|-+++-
T Consensus         7 ~g~L~~~I~~~FGS~~~fk~~f~~~A~~~~GsGWvwLv   44 (115)
T d1bsma2           7 TDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLV   44 (115)
T ss_dssp             CHHHHHHHHHHHSSHHHHHHHHHHHHHCCSSSEEEEEE
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             78999999988289999999999866326554158988


No 9  
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.54  E-value=9.4  Score=15.00  Aligned_cols=44  Identities=11%  Similarity=0.092  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEC---CCEEE
Q ss_conf             101799999986126706999999618955999999966---98699
Q gi|254780798|r   32 KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMAR---PSKFY   75 (204)
Q Consensus        32 ~~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~kk---P~k~r   75 (204)
                      ...+.+.|++.+.+...|..+|++.-.+...+|-.++-.   .+++.
T Consensus         7 ~g~L~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wL~~~~~~~~l~   53 (114)
T d1idsa2           7 TGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLL   53 (114)
T ss_dssp             CHHHHHHHHHHHSSHHHHHHHHHHHHHCCSSSEEEEEEEETTTTEEE
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEE
T ss_conf             78999999988389999999999865423444058999835888246


No 10 
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.45  E-value=4.7  Score=16.71  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEE-ECCCEEEEEE
Q ss_conf             017999999861267069999996189559999999-6698699997
Q gi|254780798|r   33 DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFM-ARPSKFYFKY   78 (204)
Q Consensus        33 ~~~~~~i~~~l~~~~t~~a~F~Q~~~~~~~~G~~~~-kkP~k~rw~y   78 (204)
                      ....+.|++.+.+.+.|..+|.+.-.+...+|-+++ ..+++++..-
T Consensus         5 g~L~~~I~~~FGS~d~fk~~f~~~A~~~~GsGW~wL~~~~~~l~i~~   51 (116)
T d1y67a2           5 GELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVS   51 (116)
T ss_dssp             HHHHHHHHHHHSSHHHHHHHHHHHHHHCCSSEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEECCCE
T ss_conf             79999999880899999999998650556534999983298751300


Done!