RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780798|ref|YP_003065211.1| possible lolA type protein
[Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone,
           lipoprotein transport, transport, periplasm, chaperone;
           1.88A {Pseudomonas aeruginosa}
          Length = 204

 Score = 72.1 bits (176), Expect = 7e-14
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 11/181 (6%)

Query: 26  AAYPITKDQSVKKAIEHFLSIQTMQGTFLQE------DAGYVMKGEFFMARPSKFYFKYS 79
            +  I    +V++        QT+   F Q              G+  + RP  F +   
Sbjct: 13  GSIAIDDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTD 72

Query: 80  SPSSVSLISDGSNIAVYNAKLDTWSVYPLRYMAFSVIF-----SNNQHVIQESIQRVESN 134
           +P+   LIS+G  + +Y+  L+  ++  L                ++     +I   E  
Sbjct: 73  APNEQLLISNGEKVWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGG 132

Query: 135 NSFITIFFKDDFMGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFE 194
           N    +           ++     S ++ + +++D   + + I     K N  LD K F 
Sbjct: 133 NVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQMIDGVGQRTNILFFDVKMNEALDAKQFT 192

Query: 195 I 195
            
Sbjct: 193 F 193


>1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta
           barrel, protein transport; 1.65A {Escherichia coli}
           SCOP: b.125.1.1 PDB: 1ua8_A 2zpd_A 2zpc_A
          Length = 182

 Score = 62.9 bits (152), Expect = 4e-11
 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 36  VKKAIEHFLSIQTMQGTFLQE------DAGYVMKGEFFMARPSKFYFKYSSPSSVSLISD 89
                     + +   +F Q+       A    +G+ ++ RP+ F +  + P    L+SD
Sbjct: 3   ASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSD 62

Query: 90  GSNIAVYNAKLDTWSVYPLRY---MAFSVIFSNNQHVIQESIQRVESNNSFITIFFKDDF 146
           G  +  YN  ++  +   L+        ++ + NQ    +     ++ + F+      + 
Sbjct: 63  GKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNG 122

Query: 147 MGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFE 194
                ++   R    +  +  ++   + S    LK ++N  +D   F 
Sbjct: 123 NLKQFTINVGR-DGTIHQFSAVEQDDQRSSY-QLKSQQNGAVDAAKFT 168


>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
           protein, B-octyl-glucoside, isomerase, steroid
           biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
           a.102.4.2 a.102.4.2 PDB: 1w6j_A*
          Length = 732

 Score = 27.7 bits (61), Expect = 1.9
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 8/48 (16%)

Query: 33  DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSS 80
            ++ ++ +   L  Q   G + QE+    + G F           Y+S
Sbjct: 667 IEAQERGVRCLLEKQLPNGDWPQEN----IAGVF----NKSCAISYTS 706


>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic
           membrane protein, QW-sequence, repeat; HET: C8E; 2.00A
           {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2
           a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A*
           1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A*
           1o79_A* 1sqc_A* 1o6r_A*
          Length = 631

 Score = 26.6 bits (58), Expect = 4.6
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 27  AYPITKDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSS 80
           A    + ++ ++ +++ +  Q   G + +        G  F   P  FY  Y+ 
Sbjct: 565 AGGRAESEAARRGVQYLVETQRPDGGWDEPY----YTGTGF---PGDFYLGYTM 611


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 4.7
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 40/70 (57%)

Query: 32  KDQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSSPSSVSLISDGS 91
           + Q++KK          +Q +                    K Y   S+P+         
Sbjct: 18  EKQALKK----------LQASL-------------------KLYADDSAPA--------- 39

Query: 92  NIAVYNAKLD 101
            +A+  A ++
Sbjct: 40  -LAI-KATME 47


>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo
           sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
          Length = 123

 Score = 25.5 bits (56), Expect = 8.5
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 172 RRYSIIKILKYKENTVLDPKVFEI 195
               + +I ++  NT+ D +   I
Sbjct: 75  SSNCVCQIHRFIVNTLKDGRRVVI 98


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,708,861
Number of extensions: 73835
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 14
Length of query: 204
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 116
Effective length of database: 3,559,758
Effective search space: 412931928
Effective search space used: 412931928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)