RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780798|ref|YP_003065211.1| possible lolA type protein
[Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>d1iwla_ b.125.1.1 (A:) Outer-membrane lipoproteins carrier protein
           LolA {Escherichia coli [TaxId: 562]}
          Length = 182

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 36  VKKAIEHFLSIQTMQGTFLQE------DAGYVMKGEFFMARPSKFYFKYSSPSSVSLISD 89
                     + +   +F Q+       A    +G+ ++ RP+ F +  + P    L+SD
Sbjct: 3   ASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSD 62

Query: 90  GSNIAVYNAKLDTWSVYPLRY---MAFSVIFSNNQHVIQESIQRVESNNSFITIFFKDDF 146
           G  +  YN  ++  +   L+        ++ + NQ    +     ++ + F+      + 
Sbjct: 63  GKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNG 122

Query: 147 MGNMISVTFDRLSYRLLNWKIMDSSRRYSIIKILKYKENTVLDPKVFE 194
                ++   R    +  +  ++   + S    LK ++N  +D   F 
Sbjct: 123 NLKQFTINVGR-DGTIHQFSAVEQDDQRSSY-QLKSQQNGAVDAAKFT 168


>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 448

 Score = 28.1 bits (62), Expect = 0.50
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 8/48 (16%)

Query: 33  DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSS 80
            ++ ++ +   L  Q   G + QE+      G F           Y+S
Sbjct: 383 IEAQERGVRCLLEKQLPNGDWPQENIA----GVF----NKSCAISYTS 422


>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
           {Alicyclobacillus acidocaldarius [TaxId: 405212]}
          Length = 352

 Score = 26.7 bits (58), Expect = 1.4
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 33  DQSVKKAIEHFLSIQTMQGTFLQEDAGYVMKGEFFMARPSKFYFKYSS 80
            ++ ++ +++ +  Q   G + +        G  F   P  FY  Y+ 
Sbjct: 293 SEAARRGVQYLVETQRPDGGWDEPY----YTGTGF---PGDFYLGYTM 333


>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 92

 Score = 24.3 bits (53), Expect = 7.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 138 ITIFFKDDFMGNMISVTFD 156
           I++F   +F GN I +  D
Sbjct: 6   ISLFEGANFKGNTIEIQGD 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,606
Number of extensions: 32706
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 8
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)